Citrus Sinensis ID: 002264
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 945 | 2.2.26 [Sep-21-2011] | |||||||
| Q84JM4 | 1108 | Topless-related protein 3 | yes | no | 0.982 | 0.837 | 0.785 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.987 | 0.824 | 0.756 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.980 | 0.819 | 0.651 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.969 | 0.817 | 0.647 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.985 | 0.820 | 0.631 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.423 | 0.294 | 0.242 | 1e-12 | |
| Q93847 | 395 | Uncharacterized WD repeat | yes | no | 0.210 | 0.503 | 0.25 | 3e-11 | |
| Q9V3J8 | 361 | Protein will die slowly O | yes | no | 0.204 | 0.534 | 0.272 | 4e-10 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.242 | 0.150 | 0.256 | 8e-10 | |
| Q54KL5 | 335 | WD repeat-containing prot | no | no | 0.209 | 0.591 | 0.252 | 1e-09 |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1519 bits (3932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 741/943 (78%), Positives = 826/943 (87%), Gaps = 15/943 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGFFFN KYF+EKV AG+WD+VE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQ+KAKAV+ILV DL+VFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTKTARGIML ELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+ PNGPLAP+ VN PV + KPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPHVPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
AAANA ALA WMA AS +S+VQAAVVT + +P PQNQ+S+LK PRTPP TPG+VDYQN
Sbjct: 241 GPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT-WSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHE LMKRLRPAPS EEVTY + R Q WSL+DLP A++LHQGSTV SM+F+P T
Sbjct: 301 PDHE-LMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQNT 359
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+ GEITLWELA R+RLVS+PFKIWDM+ CS FQA I K+ PISV+RVAWSPDG
Sbjct: 360 LLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAWSPDG 419
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
N++GVAFTKHLIQLY+++G NDLRQH++IDAHVGAVNDLAFA PN+ LCV+TCGDDKLIK
Sbjct: 420 NFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIK 479
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++SGRK F FEGH+APVYSICPH+KENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 480 VWDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPG 539
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCT MLYSADG+RLFSCGTSKDGDSFLVEWNESEG+IKRTY F+KK GVVQFDT++N
Sbjct: 540 KWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSKN 599
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGED QIKFWDM+N+N+LTSTDAEGGLP LP LRF+K+GNLLAVTTADNGFKILAN
Sbjct: 600 HFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILAN 659
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
G RSLRA+E P E +RTP++ A+ + ++V NCKVER SPVR S ++NGV
Sbjct: 660 PAGFRSLRAMETPASETMRTPVDFKAVPGAPVASV------NCKVERGSPVRHSQMLNGV 713
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP+ K R +DD TDKPK WQLAEI+D QC T+P++ +S+KVV+LLYTNS G
Sbjct: 714 DPS-----KSR-IDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAG 767
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALGSNG+Q+LWKW NEQNPSGKATA+ VPQHW P+SGLLM NDV+GVNLE A PCIA
Sbjct: 768 ILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIA 827
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNN+IAIG EDSTIH
Sbjct: 828 LSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIH 887
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
IYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADAQ+
Sbjct: 888 IYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICF 930
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1464 bits (3791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 715/945 (75%), Positives = 803/945 (84%), Gaps = 12/945 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTAAAANANA-LAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDY 297
A A LAGWMAN + SSSV + VV AS P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + S+ +KVS S+ SS +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKA---SIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPI 716
Query: 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774
NG++ SR+M+KPR +D V DK KP +L EIVD QCR VTMP+S D+ SKV RLLYTN
Sbjct: 717 PNGIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTN 775
Query: 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834
S VG+LALGSNGVQ+LWKW RNEQNP+GKATAS PQHW P+SGLLMANDV N E +V
Sbjct: 776 SGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSV 834
Query: 835 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894
PCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG ED
Sbjct: 835 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 894
Query: 895 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQV 939
S+IHIYNVRVDEVK+KLKGHQK ITGLAFST+LNILVSSGADAQ+
Sbjct: 895 SSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQL 939
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1255 bits (3248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/961 (65%), Positives = 745/961 (77%), Gaps = 34/961 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLP-VAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P + + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PTA+ LAGWM S+ SSV V+A +I + + + LKHPRTPPT +DY
Sbjct: 241 PTASPV-PTPLAGWM---SSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH----QTWSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ +G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704
AV+ +N KI+AN+ GLR L EN E+ + I S+A +A++A S+G +
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIA-AAAAAAATSAG-----HAD 710
Query: 705 RSSPVRPSPIINGVDPTSRSM--DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
RS+ V I G++ SR+M KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 711 RSANVVS---IQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLR 767
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+K+ RL++TNS +LAL SN + LWKW RNE+N +GKATAS PQ W P+SG+LM
Sbjct: 768 V-AKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMT 826
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 827 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 886
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942
QDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQ LC
Sbjct: 887 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ--LC 944
Query: 943 V 943
V
Sbjct: 945 V 945
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1251 bits (3238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/961 (64%), Positives = 736/961 (76%), Gaps = 45/961 (4%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLP-VAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PN AP+PVN P + ++ K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PT + LAGWM S+ SSV V+ I + + + LKHPRTPP+ VDY
Sbjct: 241 PTPSPV-PTPLAGWM---SSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH---QTWSL-DDLPRTVAVSLHQGS 345
+ D + + KR RP ++EV T+ H QT+ DDLP+TVA +L QGS
Sbjct: 297 SGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND+AF+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV TCGDDK IKVW+ +G K + FEGHEAPVYSICPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDY+APG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD + +LT+ DA+GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704
AV+ DN K++AN+ GLR L VEN E+ + I S+ + VE
Sbjct: 657 AVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPM-----------------VE 699
Query: 705 RSSPVRPSPIINGVDPTSRSM--DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
R + V P +NG SR+M KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 700 RPASVVSIPGMNG---DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMR 756
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+K+ RL++TNS +LAL SN + LWKW RN++N +GKATAS PQ W P+SG+LM
Sbjct: 757 V-TKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMT 815
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 816 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 875
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942
QDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQ LC
Sbjct: 876 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ--LC 933
Query: 943 V 943
V
Sbjct: 934 V 934
|
Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1211 bits (3132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/967 (63%), Positives = 734/967 (75%), Gaps = 36/967 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFK++VH+LEKESGFFFNM+YFE+ V AG+WD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD++D AKAVDILV +LKVFSTFNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK+ARGIML ELKKLIEANPLFRDKL FP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTP-VNLPVAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DHTC PNG P+P N + +V K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPV--PQNQVSVLK--HPRTPPTPGM- 294
PT A +LAGWM N SVQ V+A I + P + VS+LK PR+PPT +
Sbjct: 241 PTPAPL-TTSLAGWMPNP----SVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLS 295
Query: 295 VDYQNPDHEQLMKRLRPAPSAE----------EVTY--SSSRHQTWSLDDLPRTVAVSLH 342
+DYQ D E ++KR RP ++ VTY S H T+S DDLP+ V+ L
Sbjct: 296 MDYQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILS 355
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402
QGS + SMDFHP QT+LLVG++ G+I +WE+ R++LVS+ FK+WD+A C++ QAS+
Sbjct: 356 QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415
Query: 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP 462
+ +V+RV WSPDG +GVA++KH++ +YSY G DLR H +IDAH G VNDLAF+ P
Sbjct: 416 SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475
Query: 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521
N+ LCVVTCG+DK IKVW+ ++G KL FEGHEAPVYS+CPH KENIQFIFSTA+DGKIK
Sbjct: 476 NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535
Query: 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581
AWLYD MGSRVDYDAPG CT+M Y ADG+RLFSCGTSK+G+SF+VEWNESEG +KRTY
Sbjct: 536 AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595
Query: 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641
G K+S GVVQFDT +N FL G++ Q+KFWDMD+V++L+ST AEGGLP+ P LR +KEG
Sbjct: 596 GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655
Query: 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK--VSASSAVSSGTPA 699
LLAV+T DNG KILANA G R L ++ N ++ R P SVA V +S T
Sbjct: 656 TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715
Query: 700 NCKV-ERSSPVRPSPIINGVDPTSRSMD--KPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756
+ + ERS PV + G++ +RS+ KPR DD +K K W+L EI + Q R +
Sbjct: 716 SLSMGERSGPVAS---VTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLR 771
Query: 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816
+P+ T ++VV+L+YTNS +LAL N KLWKW ++E+N GKA ++ PQ W PS
Sbjct: 772 LPD-TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPS 830
Query: 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST 876
SG+LM ND N E+ VPC ALSKNDSYVMSA+GGKISLFNMMTFK MTTFM+PPPA+T
Sbjct: 831 SGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 890
Query: 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936
LAFHPQDNNIIAIG +DS+I IYNVRVDEVKSKLKGHQKR+TGLAFS LN+LVSSGAD
Sbjct: 891 SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGAD 950
Query: 937 AQVTLCV 943
+Q LCV
Sbjct: 951 SQ--LCV 955
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 114/471 (24%), Positives = 179/471 (38%), Gaps = 71/471 (15%)
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM----------------------RDRL 380
GS+V+S+ F Q + GS + I +W+ A R+R+
Sbjct: 840 HGSSVLSVAFSADGQRVA-SGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERV 898
Query: 381 VS----KPFKIWDMAA--CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434
S K KIWD A+ C+ + + V VA+SPDG V H I+++
Sbjct: 899 ASGSDDKTIKIWDAASGTCTQTLEGHGGR-----VQSVAFSPDGQRVASGSDDHTIKIWD 953
Query: 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGH 493
A S Q ++ H +V +AF+ + V + DK IK+W+ SG EGH
Sbjct: 954 -AASGTCTQ--TLEGHGSSVLSVAFSPDGQR--VASGSGDKTIKIWDTASGTCTQTLEGH 1008
Query: 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGS 551
V+S+ + Q + S + D IK W DT GH W ++++S DG
Sbjct: 1009 GGSVWSVA--FSPDGQRVASGSDDKTIKIW--DTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
R+ S D + W+ GT +T G S V F + D IK
Sbjct: 1065 RV----ASGSDDHTIKIWDAVSGTCTQTLEG-HGDSVWSVAFSPDGQRVASGSIDGTIKI 1119
Query: 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671
WD + + + GG + + FS +G +A + D KI A G
Sbjct: 1120 WDAASGTCTQTLEGHGGW--VHSVAFSPDGQRVASGSIDGTIKIWDAASG------TCTQ 1171
Query: 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING----VDPTSRSMDK 727
E ++SVA S + K+ ++ + + G V + S D
Sbjct: 1172 TLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDG 1231
Query: 728 PRTVDDVTDKP-KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
R +D K W A SG C T + +++ + YTN+ +
Sbjct: 1232 QRVASGSSDNTIKIWDTA----SGTC---TQTLNVGSTATCLSFDYTNAYI 1275
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S + +SPDG Y+G I+++ D + H +N+ +++ +KL
Sbjct: 109 SISGIKFSPDGRYMGSGSADCSIKIWRM----DFVYEKTLMGHRLGINEFSWSSDSKL-- 162
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+V+C DDKL+KV+++ SGR + +GH V+ C + I S + D I+ W
Sbjct: 163 IVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCC--FNPSGTLIASGSFDETIRIWC-- 218
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ PGH +++ ++ DG+ L S D + W+ + GT +T
Sbjct: 219 ARNGNTIFSIPGHEDPVSSVCFNRDGAYL----ASGSYDGIVRIWDSTTGTCVKTLIDEE 274
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
V+F + LA ++ +K WD + +L
Sbjct: 275 HPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVL 310
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ ++LL
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 468 VVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVWELS G+ L +GH Y C + I S + D ++ W D
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 184
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 185 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 240
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWD 269
|
Essential for viability. Drosophila melanogaster (taxid: 7227) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 21/250 (8%)
Query: 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF 459
S+F + SV VA+SPDG + +++ + A +L H VN + F
Sbjct: 858 SVFTKILGSVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELL---TCKGHNSWVNSVGF 914
Query: 460 AYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG 518
+ K+L + DD+ +++W++ SG+ L F+GH + V S+ N + S + D
Sbjct: 915 SQDGKML--ASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQ 970
Query: 519 KIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576
++ W D Y GH W ++ ++ DGS L + GD + W+ S
Sbjct: 971 TVRLW--DISSGECLYIFQGHTGWVYSVAFNLDGSML----ATGSGDQTVRLWDISSSQC 1024
Query: 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRL 635
+ G VV ++ LA G D Q ++ WD+ + N L + +G + +
Sbjct: 1025 FYIFQGHTSCVRSVVF--SSDGAMLASGSDDQTVRLWDISSGNCLYTL--QGHTSCVRSV 1080
Query: 636 RFSKEGNLLA 645
FS +G +LA
Sbjct: 1081 VFSPDGAMLA 1090
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 12/210 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S V +SPDG ++ A I+++ G+ D + ++ H ++D+A++ +KL+C
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIW---GAYDGKFERTLEGHKEGISDIAWSQDSKLIC 104
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ DDK IK+W++ SG+ + +GH+ V+ + + + N+ I S + D ++ W +
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDVN 160
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A T + ++ DG+ + S S DG + W+ + G + T + K
Sbjct: 161 TGECTKMISAHSDPVTGVHFNRDGTLVVS--GSYDGTVRI--WDTTTGQLLNTISTEDGK 216
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616
V+F LA D+ ++ W +N
Sbjct: 217 EVSFVKFSPNGKFVLAGTLDNTLRLWSYNN 246
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 945 | ||||||
| 255542820 | 1132 | WD-repeat protein, putative [Ricinus com | 0.995 | 0.831 | 0.862 | 0.0 | |
| 224123676 | 1133 | predicted protein [Populus trichocarpa] | 0.994 | 0.829 | 0.834 | 0.0 | |
| 449454049 | 1127 | PREDICTED: topless-related protein 3-lik | 0.990 | 0.830 | 0.846 | 0.0 | |
| 87162556 | 1128 | Lissencephaly type-1-like homology motif | 0.993 | 0.832 | 0.833 | 0.0 | |
| 357511795 | 1129 | hypothetical protein MTR_7g112460 [Medic | 0.993 | 0.831 | 0.852 | 0.0 | |
| 224125092 | 1124 | predicted protein [Populus trichocarpa] | 0.994 | 0.836 | 0.849 | 0.0 | |
| 357441817 | 1140 | WD repeat-containing protein [Medicago t | 0.993 | 0.823 | 0.823 | 0.0 | |
| 356576819 | 1131 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.832 | 0.826 | 0.0 | |
| 356535043 | 1130 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.832 | 0.831 | 0.0 | |
| 356572948 | 1131 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.832 | 0.851 | 0.0 |
| >gi|255542820|ref|XP_002512473.1| WD-repeat protein, putative [Ricinus communis] gi|223548434|gb|EEF49925.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1664 bits (4308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/946 (86%), Positives = 875/946 (92%), Gaps = 5/946 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKF ESVHKLEK+SGF+FNMKYFEEKVQAG+W+EVE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFMESVHKLEKDSGFYFNMKYFEEKVQAGEWEEVENYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD QDKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
LSNFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LSNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLGFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTCSPPNGPLAP PVNLPVAAVAKP++Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLAPAPVNLPVAAVAKPSAYPSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
TAAAANA ALAGWMANASASSSVQAAVVTASS+PVPQNQVSVLK PRTPPT PGMVDYQN
Sbjct: 241 TAAAANAGALAGWMANASASSSVQAAVVTASSMPVPQNQVSVLKRPRTPPTAPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHEQLMKRLRPA S +EVTY +SR Q +WSLDDLPRTVA+++HQGS V SMDFHPSHQT
Sbjct: 301 PDHEQLMKRLRPAQSVDEVTYPTSRQQASWSLDDLPRTVALTMHQGSAVTSMDFHPSHQT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL R+RLVSKPFKIW++ +CSL FQAS KD P+SV+RV WSPDG
Sbjct: 361 LLLVGSANGEVTLWELVQRERLVSKPFKIWEITSCSLQFQASFVKDAPVSVNRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+ VG AF KHLI LY+Y GS+DLRQ +IDAH G VNDLAFA+PNK LCVVTCGDDKLIK
Sbjct: 421 SLVGAAFNKHLIHLYAYTGSSDLRQQLEIDAHAGGVNDLAFAHPNKQLCVVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 481 VWDLGGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNVGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN-GVVQFDTTQ 597
HWCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG IKR YAGFRKKS GVVQFDTTQ
Sbjct: 541 HWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGAIKRHYAGFRKKSTAGVVQFDTTQ 600
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
NHFLA GED QIKFWDMDN N+LTS DA+GGLP+LPRLRF+KEGNLLAVTTADNGFKI+A
Sbjct: 601 NHFLAAGEDGQIKFWDMDNTNVLTSIDADGGLPSLPRLRFNKEGNLLAVTTADNGFKIIA 660
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
NA GLR+LRAVE P FEALR+PIES A+KVS +S V++ +P N KVERSSPVRPSPI+NG
Sbjct: 661 NAAGLRALRAVETPGFEALRSPIESAAIKVSGASGVANISPVNLKVERSSPVRPSPILNG 720
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
VDP SRSM+K RTVDDV DK KPWQLAEIV+ +CRLVT+P+STD+SSKVVRLLYTNS V
Sbjct: 721 VDPMSRSMEKLRTVDDVIDKTKPWQLAEIVEPDECRLVTLPDSTDSSSKVVRLLYTNSGV 780
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
G+LALGSNG+QKLWKW R++QNPSGKATA AVPQHW P+SGLLMANDV+GVNLEEAVPCI
Sbjct: 781 GILALGSNGIQKLWKWARSDQNPSGKATAGAVPQHWQPNSGLLMANDVSGVNLEEAVPCI 840
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 841 ALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 900
Query: 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
HIYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADAQ LCV
Sbjct: 901 HIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQ--LCV 944
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123676|ref|XP_002330180.1| predicted protein [Populus trichocarpa] gi|222871636|gb|EEF08767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1652 bits (4277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 796/954 (83%), Positives = 859/954 (90%), Gaps = 14/954 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGF+FNMKYFEEKV AG+WDEVEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAK V+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKGVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IML+ELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS-YASLGTHSPFP 239
WQHQLCKNPR NPDIKTLFTDHTCSP NGPLA PVNLPVAA A + Y LG H PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPMNGPLAAAPVNLPVAAAAAKPAAYTPLGAHGPFP 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDYQ 298
T AAAN +ALA WMAN SASSSVQAAVVTASSIP+PQNQV VLK PRTPPT G+VDYQ
Sbjct: 241 ATGAAANTSALASWMANTSASSSVQAAVVTASSIPIPQNQVPVLKRPRTPPTALGIVDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSR-HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
NPDHE L+KRLRPA S EEVTY +SR H +WSL+ LPRTVA SLH GS V+SMDFHPSH
Sbjct: 301 NPDHE-LIKRLRPAQSVEEVTYPASRQHASWSLEYLPRTVAFSLHPGSAVMSMDFHPSHH 359
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS NGEITLWEL R+RL SKPFKIWDM+ACSL FQAS FKD ISV+RVAWSPD
Sbjct: 360 TLLLVGSVNGEITLWELISRERLFSKPFKIWDMSACSLQFQASGFKDASISVTRVAWSPD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN+VG AF KHLI LY+Y G NDLRQH +IDAHVG VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GNFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 K--------VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529
K VW+L+GRKLFNF GHEAPVY+ICPHHKENIQFIFSTAIDGKIKAWLYD MG
Sbjct: 480 KAIYIMLKQVWDLTGRKLFNFGGHEAPVYNICPHHKENIQFIFSTAIDGKIKAWLYDNMG 539
Query: 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589
SRVDYDAPG WCTTMLYS DGSRLFSCGTSKDG+S+LVEWNESEG+IKR++ GFRKKS G
Sbjct: 540 SRVDYDAPGRWCTTMLYSTDGSRLFSCGTSKDGESYLVEWNESEGSIKRSFVGFRKKSAG 599
Query: 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649
VVQFDTTQNHFLA G+D QIKFWDM+N N+LTSTDA+GGL LPRLRF++EGNLLAV+TA
Sbjct: 600 VVQFDTTQNHFLAAGDDGQIKFWDMENTNVLTSTDADGGLQTLPRLRFNREGNLLAVSTA 659
Query: 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709
DNGFKILANA GLRSLRAVE FEALR+P+ES A+KVS +S++++ +P NCKVER+SPV
Sbjct: 660 DNGFKILANAAGLRSLRAVETQSFEALRSPMESAAIKVSGASSIANASPVNCKVERNSPV 719
Query: 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769
RPSPI+NGVDP +RSM+KPRTVDDV DK KPWQLAEI D +CRLVT+PES DTSSKVVR
Sbjct: 720 RPSPILNGVDPLNRSMEKPRTVDDVIDKTKPWQLAEIADPSECRLVTLPESADTSSKVVR 779
Query: 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829
LLYTNS VG+LALG+NG+QKLWKW RNEQNPSGKATAS PQHW P+SGLLM NDV+GVN
Sbjct: 780 LLYTNSGVGMLALGANGIQKLWKWPRNEQNPSGKATASVAPQHWQPNSGLLMTNDVSGVN 839
Query: 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
LEEAVPCIALSKNDSYVMSATGGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA
Sbjct: 840 LEEAVPCIALSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 899
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
IG EDSTIHIYNVRVDEVKSKLKGHQKR+TGLAFST+LNILVSSGADAQ LC+
Sbjct: 900 IGMEDSTIHIYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQ--LCI 951
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454049|ref|XP_004144768.1| PREDICTED: topless-related protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1643 bits (4255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 799/944 (84%), Positives = 863/944 (91%), Gaps = 8/944 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGF+FNMKYFE+KVQAG+W+EVEKYLSG+
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFYFNMKYFEDKVQAGEWEEVEKYLSGY 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR DKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRSDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK AR IMLIELKKLIEANPLFRDKL FP LKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKAARSIMLIELKKLIEANPLFRDKLVFPALKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSPPNGPLAPTPVNLPVA KPA YA LG HSPFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFMDHTCSPPNGPLAPTPVNLPVA---KPAPYAPLGAHSPFPP 237
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
T A ANANALAGWMANASASSSVQAAVVTASSIPVPQNQVS+LKH RTPP+ PGMVDYQN
Sbjct: 238 TGATANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKHARTPPSNPGMVDYQN 297
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
P+H+QLMKRLR A S EEVTY + R Q +WS++DLPRTVA +LHQGSTV SMDFHP+H T
Sbjct: 298 PEHDQLMKRLRSAQSVEEVTYPAPRQQASWSIEDLPRTVAFTLHQGSTVTSMDFHPTHHT 357
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL +R+RL+SKPFK+WD+++ SL FQA+I KD PISVSRV WSPDG
Sbjct: 358 LLLVGSNNGEVTLWELGIRERLISKPFKLWDLSSRSLAFQAAIVKDTPISVSRVTWSPDG 417
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+VGVAFTKHL+ LYSY SN+L Q S+IDAHVG VNDLAFA+PNK LCVVTCG+DKLIK
Sbjct: 418 TFVGVAFTKHLVHLYSYNSSNELNQQSEIDAHVGGVNDLAFAHPNKQLCVVTCGEDKLIK 477
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++ GRKLF FEGHEA VYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAPG
Sbjct: 478 VWDIGGRKLFTFEGHEASVYSICPHHKENIQFIFSTALDGKIKAWLYDHMGSRVDYDAPG 537
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCTTMLYSADGSRLFSCGTSKDGDS+LVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 538 KWCTTMLYSADGSRLFSCGTSKDGDSYLVEWNESEGAIKRTYLGFRKKSTGVVQFDTTQN 597
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGEDSQIKFWDMDNVNILT TDAEGGLP+LPRLRF+KEGNLLAVTT DNGFKILAN
Sbjct: 598 HFLAVGEDSQIKFWDMDNVNILTYTDAEGGLPSLPRLRFNKEGNLLAVTT-DNGFKILAN 656
Query: 659 AIGLRSLRAVEN-PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
A+G+RSL+A+E+ PFEALR+P+ES ALKVS SAV+S +P NCKVERSSPVRP IING
Sbjct: 657 AVGMRSLKAIESTTPFEALRSPMES-ALKVSGPSAVASVSPVNCKVERSSPVRPPSIING 715
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
V+ R++DK RTV+D DK KPWQLAEIVD CRLVTMP++ D+S KVVRLLYTNS V
Sbjct: 716 VEGLGRNLDKARTVEDAIDKAKPWQLAEIVDPASCRLVTMPDNADSSHKVVRLLYTNSGV 775
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
GLLALGSNG+QKLWKW RNEQNPSGKATA+ VPQHW P+SGLLM NDV GVNLEEAVPCI
Sbjct: 776 GLLALGSNGIQKLWKWTRNEQNPSGKATANVVPQHWQPNSGLLMTNDVLGVNLEEAVPCI 835
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA+GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 836 ALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTI 895
Query: 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ+ L
Sbjct: 896 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCL 939
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87162556|gb|ABD28351.1| Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1641 bits (4250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 787/944 (83%), Positives = 861/944 (91%), Gaps = 5/944 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVAYTSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRTPP TPG+VDYQN
Sbjct: 241 NVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V S+DFHPSH TL
Sbjct: 301 TDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSLDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDGN
Sbjct: 361 LLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKSNGVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSNGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVTT DNGFKI+ANA
Sbjct: 601 FLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKIMANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSSPVRP PI+NGVD
Sbjct: 661 TGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSSPVRPPPILNGVD 719
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
P SRS++K R V+D TD+ K WQL EI+D QCR VTMP++TD+ SKVVRLLYTNSAVG+
Sbjct: 720 PMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKVVRLLYTNSAVGI 778
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AGVNLEEAVPCIAL
Sbjct: 779 LALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIAL 838
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNII+IG EDSTIHI
Sbjct: 839 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHI 898
Query: 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
YNVRVDEVKSKLKGHQ+RITGLAFST+LNILVSSGADAQ +CV
Sbjct: 899 YNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQ--MCV 940
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511795|ref|XP_003626186.1| hypothetical protein MTR_7g112460 [Medicago truncatula] gi|355501201|gb|AES82404.1| hypothetical protein MTR_7g112460 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1640 bits (4246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 806/946 (85%), Positives = 864/946 (91%), Gaps = 7/946 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTARGIML+ELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGT--HSPF 238
WQHQLCKNPR NPDIKTLF DH+C+P NGPLAPTPVNLPVAAVAKPA+Y SLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPAAYTSLGVGAHGPF 240
Query: 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDY 297
PP AA ANANALAGWMANAS SSSVQAAVVTAS+IPVP NQVS+LK P TP T PGMV+Y
Sbjct: 241 PPAAATANANALAGWMANASVSSSVQAAVVTASTIPVPHNQVSILKRPITPSTTPGMVEY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLRPAPS EEV+Y S+R +WSLDDLPRTVA+SLHQGS+V SMDFHPSHQ
Sbjct: 301 QSADHEQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQ 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS+NGEI+LWEL MR+RLVSKPFKIWD++ACSLPFQA++ KD P SVSRV WS D
Sbjct: 361 TLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTP-SVSRVTWSLD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
G++VGVAFTKHLI +Y+Y GSN+L Q +IDAH+G VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+L+GR+LFNFEGHEAPVYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAP
Sbjct: 480 KVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
GHWCTTMLYSADG+RLFSCGTSKDGDSFLVEWNESEG IKRTY GFRKKS GVVQFDTTQ
Sbjct: 540 GHWCTTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQ 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLA GEDSQIKFWDMDNVN LTST+AEGGL LP LRF+KEGNLLAVTTADNGFKILA
Sbjct: 600 NRFLAAGEDSQIKFWDMDNVNPLTSTEAEGGLQGLPHLRFNKEGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717
NA GLRSLR VE P FEALR+PIES A KVS SSAV+ +P +CKVERSSP RPS I+NG
Sbjct: 660 NAGGLRSLRTVETPAFEALRSPIESAANKVSGSSAVNV-SPVSCKVERSSPARPSQILNG 718
Query: 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777
VDP R+ +KPRTV+DV D+ K WQL EIVD CRLVTMP+STDTSSKVVRLLYTNS
Sbjct: 719 VDPAGRNAEKPRTVEDVMDRTKSWQLFEIVDPAHCRLVTMPDSTDTSSKVVRLLYTNSGA 778
Query: 778 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837
GLLALGSNGVQKLWKW RN+QNPSGKATAS VPQHW P+SGLLM NDV+GVNLEEAVPCI
Sbjct: 779 GLLALGSNGVQKLWKWSRNDQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLEEAVPCI 838
Query: 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM+PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 839 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMAPPPASTFLAFHPQDNNIIAIGMEDSTI 898
Query: 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
HIYNVRVDEVKSKLKGHQKRI+GLAFST+L ILVSSGADA LCV
Sbjct: 899 HIYNVRVDEVKSKLKGHQKRISGLAFSTNLGILVSSGADAH--LCV 942
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125092|ref|XP_002319498.1| predicted protein [Populus trichocarpa] gi|222857874|gb|EEE95421.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1638 bits (4242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/945 (84%), Positives = 868/945 (91%), Gaps = 5/945 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGF+FNMKYFEEKV AG+WDEVEKYL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLVGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAV+ILV DLKVF TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFLTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IML+ELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCK+PR+NPDIKTLF DHTCSP NGPLAP PV+LPVAAVAKPA Y SLG H PFP
Sbjct: 181 WQHQLCKHPRSNPDIKTLFIDHTCSPTNGPLAPAPVSLPVAAVAKPAPYTSLGAHGPFPA 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
T AAANA ALAGWMANASASSSVQAAVVTASSIP+PQNQVSVLK RTPPT PG+VDYQN
Sbjct: 241 TGAAANAGALAGWMANASASSSVQAAVVTASSIPIPQNQVSVLKRQRTPPTAPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHE LMKRLRPA S EE TY +SR Q +WSL+DLPRTVA +LHQGSTV+SMDFHPSH T
Sbjct: 301 PDHE-LMKRLRPAQSVEEATYPASRQQASWSLEDLPRTVAFALHQGSTVMSMDFHPSHHT 359
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS NGEITLWEL R+RL SKPFKIWD+ CSL FQAS FKD ISV+RVAWSPDG
Sbjct: 360 LLLVGSVNGEITLWELISRERLFSKPFKIWDLQGCSLQFQASGFKDASISVTRVAWSPDG 419
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
N+VG AF KHLI LY+Y G NDLRQH +IDAHVG VNDLAFA+PNK LCVVTCGDDKLIK
Sbjct: 420 NFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLIK 479
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L+GRKLFNFEGHEA VY+ICPHHKENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 480 VWDLTGRKLFNFEGHEAAVYNICPHHKENIQFIFSTAIDGKIKAWLYDNIGSRVDYDAPG 539
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
HWCTTMLYSADGSRLFSCGTSK+GDS+LVEWNESEG++KR++ GFRKKS GVVQFDTTQN
Sbjct: 540 HWCTTMLYSADGSRLFSCGTSKEGDSYLVEWNESEGSVKRSFLGFRKKSAGVVQFDTTQN 599
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLA G+D QIKFWDM+N++ +T+TDA+GGL LPRL+F+KEGNLLAVTTADNGFKILAN
Sbjct: 600 HFLAAGDDGQIKFWDMENISFITTTDADGGLQTLPRLKFNKEGNLLAVTTADNGFKILAN 659
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
A GLRSLRAVE FEALR+P+ES A+KVS +S + + +P N KVERSSPVRPSPI+NGV
Sbjct: 660 AAGLRSLRAVETHSFEALRSPMESAAIKVSGTSNIVNASPVNLKVERSSPVRPSPILNGV 719
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP +RSM+KPRTVDDV DK KPWQLAEIVD G+CRLVT+P+STDTSSKVVRLLYTNS VG
Sbjct: 720 DPMNRSMEKPRTVDDVIDKTKPWQLAEIVDPGECRLVTLPDSTDTSSKVVRLLYTNSGVG 779
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALG+NG+QKLWKW RNEQNPSGKATA+ VPQHW P+SGLLM NDV+GVNLEEAVPCIA
Sbjct: 780 MLALGANGIQKLWKWPRNEQNPSGKATANVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIA 839
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSATGGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG EDSTIH
Sbjct: 840 LSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIH 899
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
IYNVRVDEVKSKLKGHQKR+TGLAFST+LNILVSSGADAQ LC+
Sbjct: 900 IYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQ--LCI 942
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441817|ref|XP_003591186.1| WD repeat-containing protein [Medicago truncatula] gi|355480234|gb|AES61437.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1633 bits (4229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 787/956 (82%), Positives = 861/956 (90%), Gaps = 17/956 (1%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNF------------RENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKS 168
L+NF RENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKS
Sbjct: 121 LNNFSMPTDLYFISYDRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKS 180
Query: 169 SRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS 228
SRLRTLINQSLNWQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +
Sbjct: 181 SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVA 240
Query: 229 YASLGTHSPFPPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRT 288
Y SLG H PFPP A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRT
Sbjct: 241 YTSLGAHGPFPPNVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRT 300
Query: 289 PP-TPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTV 347
PP TPG+VDYQN DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V
Sbjct: 301 PPATPGIVDYQNTDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSV 360
Query: 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407
S+DFHPSH TLLLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PI
Sbjct: 361 TSLDFHPSHHTLLLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPI 420
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SVSRV WSPDGN+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC
Sbjct: 421 SVSRVTWSPDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLC 480
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
+VTCGDDKLIKVW+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD
Sbjct: 481 IVTCGDDKLIKVWDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDN 540
Query: 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS
Sbjct: 541 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKS 600
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647
NGVVQFDTTQN FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVT
Sbjct: 601 NGVVQFDTTQNRFLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVT 660
Query: 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707
T DNGFKI+ANA GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSS
Sbjct: 661 TVDNGFKIMANATGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSS 719
Query: 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767
PVRP PI+NGVDP SRS++K R V+D TD+ K WQL EI+D QCR VTMP++TD+ SKV
Sbjct: 720 PVRPPPILNGVDPMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKV 778
Query: 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 827
VRLLYTNSAVG+LALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AG
Sbjct: 779 VRLLYTNSAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAG 838
Query: 828 VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
VNLEEAVPCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNI
Sbjct: 839 VNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNI 898
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
I+IG EDSTIHIYNVRVDEVKSKLKGHQ+RITGLAFST+LNILVSSGADAQ +CV
Sbjct: 899 ISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQ--MCV 952
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576819|ref|XP_003556527.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1632 bits (4227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 781/945 (82%), Positives = 860/945 (91%), Gaps = 4/945 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLP+AAVAKPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPP 240
Query: 241 TAAAANANALA-GWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQ 298
AAA GWMANASASSSVQAAVVTAS++PVPQNQV +LK PRTPP PGM+DYQ
Sbjct: 241 AAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQVPILKRPRTPPANPGMIDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
N DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH T
Sbjct: 301 NADHEQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLL GS+NGEI+LWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG
Sbjct: 361 LLLAGSNNGEISLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
++VG+AFTKHLI LY+Y G N+L Q ++DAHVG VNDL+FA+PNK +C+VTCGDDKLIK
Sbjct: 421 SFVGIAFTKHLIHLYAYTGPNELTQRIEVDAHVGGVNDLSFAHPNKQMCIVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPG
Sbjct: 481 VWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
HWCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 HWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQN 600
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
FLA GED Q+KFWDMDN+N+L S+DA+GGL +LPRLRF+KEGN+LAVTT DNGFKILAN
Sbjct: 601 RFLAAGEDGQVKFWDMDNINLLISSDADGGLQSLPRLRFNKEGNILAVTTVDNGFKILAN 660
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718
A GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+NGV
Sbjct: 661 ASGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGV 720
Query: 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778
DP RS +KPRTV+DV D+ KPWQL+EI+D QCR VTMPESTD+SSKVVRLLYTNSAVG
Sbjct: 721 DPMGRSAEKPRTVEDVIDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSAVG 780
Query: 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
+LALGSNG+QKLWKW R+EQNP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIA
Sbjct: 781 ILALGSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIA 840
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
LSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIH
Sbjct: 841 LSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIH 900
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
IYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADA LCV
Sbjct: 901 IYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAH--LCV 943
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535043|ref|XP_003536058.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1626 bits (4210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/944 (83%), Positives = 863/944 (91%), Gaps = 3/944 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTP+NLP+AAVAKPA+Y LG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPINLPIAAVAKPATYTPLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
AA ANANALAGWMANASASSSVQAAVVTAS+IPVPQNQ PRTPP PGMVDYQN
Sbjct: 241 AAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQXXXXXRPRTPPANPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DH+QLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH TL
Sbjct: 301 ADHDQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEITLWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG+
Sbjct: 361 LLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGS 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VG+AFTKHLI LY+ GSN+L Q ++DAHVG VNDLAFA+PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED Q+KFWDMDN+N+L ST+A+GGL +LPRLRF+KEGN+LAVTT DNGFKILANA
Sbjct: 601 FLAAGEDGQVKFWDMDNINLLISTEADGGLQSLPRLRFNKEGNILAVTTMDNGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+NGVD
Sbjct: 661 SGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGVD 720
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
P RS++KPRTV+DVTD+ KPWQL+EI+D QCR VTMPESTD+SSKV+RLLYTNSAVG+
Sbjct: 721 PMGRSVEKPRTVEDVTDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVIRLLYTNSAVGI 780
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNG+QKLWKW R+E NP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIAL
Sbjct: 781 LALGSNGIQKLWKWARSELNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIAL 840
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG +DSTIHI
Sbjct: 841 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMDDSTIHI 900
Query: 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
YNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADA LCV
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAH--LCV 942
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572948|ref|XP_003554627.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1625 bits (4208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 804/944 (85%), Positives = 865/944 (91%), Gaps = 3/944 (0%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEK KESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLEEEKLKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
LSNFRENEQLSKYGDTK ARGIMLIELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LSNFRENEQLSKYGDTKNARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLPVAAVAKPA+Y S+G H PF P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFLP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTP-PTPGMVDYQN 299
A ANANALAGWMANASASSSVQAAVVTAS+IPVPQN VS+LK PRTP T GM DYQN
Sbjct: 241 ATATANANALAGWMANASASSSVQAAVVTASAIPVPQNPVSILKCPRTPLTTAGMADYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRPAPS EEV+ ++R +WSLDDLPRTVA++LHQGS+V SMDFHPSHQTL
Sbjct: 301 ADHEQLMKRLRPAPSVEEVSCPAARPASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEITLWEL +RDRLVSKPFKIWD++ACSLPFQA++ KD PISVSRV WS DGN
Sbjct: 361 LLVGSNNGEITLWELGLRDRLVSKPFKIWDISACSLPFQAAMVKDAPISVSRVTWSLDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAH+G VNDLAFA+PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+L+GRKLFNFEGHEAPVYSICPHHKE+IQF+FSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDLTGRKLFNFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESE IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESERAIKRTYNGFRKKSAGVVQFDTTQNC 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED QIKFWDMDN+N+LTSTDAEGGL LP LRF+KEGN+LAVTTADNGFKILANA
Sbjct: 601 FLAAGEDGQIKFWDMDNINLLTSTDAEGGLQALPHLRFNKEGNVLAVTTADNGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719
GLRSLR VE P FEALR+PIES A+KV++ S+ + +P NCKVERSSPVRPSPI+NGVD
Sbjct: 661 NGLRSLRTVETPGFEALRSPIESAAVKVASGSSAVNVSPVNCKVERSSPVRPSPILNGVD 720
Query: 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779
P R+++KPRTV+D DK KPWQL+EIVD+ QCRLVT P+STD+SSKVVRLLYTNS GL
Sbjct: 721 PMGRNVEKPRTVEDGIDKAKPWQLSEIVDAVQCRLVTTPDSTDSSSKVVRLLYTNSGAGL 780
Query: 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839
LALGSNGVQKLWKW R EQNP+GKATAS VPQHW P+SGLLM NDV GVNL+EAVPCIAL
Sbjct: 781 LALGSNGVQKLWKWARCEQNPNGKATASVVPQHWQPNSGLLMTNDVTGVNLDEAVPCIAL 840
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
SKNDSYVMSA GGKISLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIHI
Sbjct: 841 SKNDSYVMSACGGKISLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHI 900
Query: 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
YNVRVDEVKSKLKGHQKRITGLAFST LNILVSSGADAQ LCV
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQ--LCV 942
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 945 | ||||||
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.987 | 0.824 | 0.732 | 0.0 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.980 | 0.819 | 0.636 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.970 | 0.818 | 0.640 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.238 | 0.304 | 0.343 | 1.3e-53 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.285 | 0.467 | 0.244 | 5e-15 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.208 | 0.312 | 0.256 | 1.7e-14 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.282 | 0.195 | 0.263 | 6.1e-11 | |
| MGI|MGI:1916794 | 328 | Wdr5b "WD repeat domain 5B" [M | 0.206 | 0.594 | 0.256 | 3.7e-13 | |
| UNIPROTKB|A8X8C6 | 368 | tag-125 "WD repeat-containing | 0.203 | 0.521 | 0.261 | 6.7e-12 | |
| WB|WBGene00006474 | 376 | wdr-5.1 [Caenorhabditis elegan | 0.203 | 0.510 | 0.257 | 6.9e-12 |
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3572 (1262.5 bits), Expect = 0., P = 0.
Identities = 692/945 (73%), Positives = 776/945 (82%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IPVPQNQVSVLKHPRTPPTP-GMVDY 297
P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + I+ +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSI---SPAIGKIEHMDAGSPARPTPI 716
Query: 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774
NG++ SR+M+KPR +D V DK KP +L EIVD QCR VTMP+S D+ SKV RLLYTN
Sbjct: 717 PNGIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTN 775
Query: 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834
S VG+LALGSNGVQ+LWKW RNEQNP+GKATAS PQHW P+SGLLMANDV N E +V
Sbjct: 776 SGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSV 834
Query: 835 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894
PCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG ED
Sbjct: 835 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 894
Query: 895 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQV 939
S+IHIYNVRVDEVK+KLKGHQK ITGLAFST+LNILVSSGADAQ+
Sbjct: 895 SSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQL 939
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3110 (1099.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 612/961 (63%), Positives = 721/961 (75%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P+ + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP-VPQNQVSVLKHPRTPPTPGMVDYQ 298
PT P +P + LKHPRTPPT +DY
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIP----AALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH----QTWSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ + G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVE 704
AV+ +N KI+AN+ GLR L EN E+ + I T A +
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAA-----TSAG-HAD 710
Query: 705 RSSPVRPSPIINGVDPTSRSM-D-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762
RS+ V I G++ SR+M D KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 711 RSANVVS---IQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLR 767
Query: 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822
+ K+ RL++TNS +LAL SN + LWKW RNE+N +GKATAS PQ W P+SG+LM
Sbjct: 768 VA-KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMT 826
Query: 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882
NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHP
Sbjct: 827 NDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 886
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942
QDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQ LC
Sbjct: 887 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ--LC 944
Query: 943 V 943
V
Sbjct: 945 V 945
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3094 (1094.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 615/960 (64%), Positives = 722/960 (75%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PN AP+PVN P+ ++ K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPVPQNQVSVLKHPRTPPTPGMVDYQN 299
PT P Q + LKHPRTPP+ VDY +
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQ---AALKHPRTPPSNSAVDYPS 297
Query: 300 PDHEQLMKRLRPAPSAEEV---------TYSSSRH---QTWSL-DDLPRTVAVSLHQGST 346
D + + KR RP ++EV T+ H QT+ DDLP+TVA +L QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
+SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND+AF+ PNK L
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 467 CVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
CV TCGDDK IKVW+ + G K + FEGHEAPVYSICPH+KENIQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585
D MGSRVDY+APG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645
+S GVVQFDTT+N +LA G+D IKFWDMD + +LT+ DA+GGL PR+RF+KEG+LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVER 705
V+ DN K++AN+ GLR L VEN E+ + I P VER
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSI--------------PM---VER 700
Query: 706 SSPVRPSPIINGVDPTSRSM-D-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763
+ V P +NG D SR+M D KP ++ DK K W+L E+ + QCR + +PE+
Sbjct: 701 PASVVSIPGMNG-D--SRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRV 757
Query: 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823
+ K+ RL++TNS +LAL SN + LWKW RN++N +GKATAS PQ W P+SG+LM N
Sbjct: 758 T-KISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTN 816
Query: 824 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883
DVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHPQ
Sbjct: 817 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 876
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
DNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQ LCV
Sbjct: 877 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ--LCV 934
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 81/236 (34%), Positives = 131/236 (55%)
Query: 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765
+S + P+++ + T SM K V K KP EI D QC + +P+ +
Sbjct: 336 TSSLENVPVVSYLCGTPSSM-KFFFKKTVPRKKKP---NEIKDPSQCNALVLPDCF-SEE 390
Query: 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825
K+ RL Y+ S +LAL + KLW W + QN K P+ P SG M N++
Sbjct: 391 KIARLTYSPSGDYILALAEDATHKLWTWS-SSQNEFCKENVYPKPRLHQPQSGKTMENEM 449
Query: 826 AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885
A +++++ C A+ SY+ S +GGKI++F++ F+ + +F SP P +T+ F P D
Sbjct: 450 A-TSVQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASFGSPTPMATYFIFIPGD- 505
Query: 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
++A+G +D +I I+ + +VK KL+GH ++IT LAFS N+LVSS +D ++ L
Sbjct: 506 -LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCL 560
|
|
| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 73/299 (24%), Positives = 127/299 (42%)
Query: 370 TLWELAMRDRLVSKPFKIWDMAACSLPF---QASIFKDVPISV--SRVAWSPDGNYVGVA 424
++W L + R S + D+ S F S K P+ V S + +SP + +
Sbjct: 207 SMWRLVLLLRRKSSDSDLLDLVRDSYRFFLQNISAIKCAPLQVYASALVFSPADSLIRKL 266
Query: 425 FTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
F K + D+ H ++ H AV +++++ ++LL + DD+ +K+
Sbjct: 267 FGKE--EPNWIETKPDVANHWSPCLQALEGHEAAVLSVSYSHDSRLLA--SASDDRTVKI 322
Query: 480 WEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
W+ +G EGH V S+ H + ++A D +K W DT + + G
Sbjct: 323 WDTETGSLQHTLEGHSDLVRSVIFSHDSRL---LASASDSTVKIW--DTGTGSLQHTLEG 377
Query: 539 H--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596
H W ++++S D S+L + S DS + W+ G+++ T G R V+ F
Sbjct: 378 HRDWVRSVIFSHD-SQLLA---SASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVI-FSHD 432
Query: 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ +DS +K WD L T EG + + FS + LLA + D +I
Sbjct: 433 SQLLASASDDSTVKIWDT-GTGSLQHT-LEGHRDWVRSVIFSHDSRLLASASDDRTVRI 489
|
|
| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 56/218 (25%), Positives = 100/218 (45%)
Query: 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFF---NMKYFEEKVQAGDWDEVEKYLSGFT 61
++E++ LI Q+L + +SV L ESG + + F E V GDW + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVDDNRYSMKIF---FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L ++L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQ-HNITRVHQLSSY 215
Query: 119 LTLSNFRENEQLSKY-GDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQ 177
+ S ++ Q +K+ G +R +++ L+ + + + + RLRTL+ Q
Sbjct: 216 MMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMPPSVMMSPR---------RLRTLLQQ 266
Query: 178 SLNWQHQLCK-NPRA---NPDIKTLFTDHTCSPPNGPL 211
++ Q Q C + A N + +L TDH C+ P+
Sbjct: 267 AVELQSQHCPCHDMAWETNLETVSLLTDHCCTTDGFPM 304
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 76/288 (26%), Positives = 126/288 (43%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
K+W+ L FK + + VA+SPDG ++ + I+L+ A S +L+Q
Sbjct: 985 KLWNSTTGELQ---QTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLWDLATS-ELQQ-- 1038
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504
++ H +V+ +AF+ +K L + D IK+W+ +G EGH V S+
Sbjct: 1039 SLEDHSRSVHAVAFSPDDKQLASSSL--DSTIKLWDSATGELQRTLEGHSQGVRSVT--F 1094
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + + S + DG IK W T + W ++ +S DG +L S G DS
Sbjct: 1095 SPDGKLLASNSYDGTIKLWNPLTGELQQTLTGRSDWVDSVAFSPDGKQLAS-GYY---DS 1150
Query: 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTST 623
+ W+ + G + +T G + VV F + LA G D K WD +L
Sbjct: 1151 TIKLWDSATGELLQTLEGHSDRIQSVV-F-SPDGKLLASGSYDQTAKLWDPATGELLQIF 1208
Query: 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671
EG + + FS +G LLA ++ K+ G L+ + +P
Sbjct: 1209 --EGHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTG-ELLQTLNDP 1253
|
|
| MGI|MGI:1916794 Wdr5b "WD repeat domain 5B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 53/207 (25%), Positives = 94/207 (45%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++S V +SP+G ++ + LI ++ G+ D + H ++D+A++ + L
Sbjct: 41 AISSVKFSPNGEWLASSAADALIIIW---GAYDGNCKKTLYGHSLEISDVAWSSDSSRL- 96
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVW++ SG+ L +GH V+ C + + I S + D +K W
Sbjct: 97 -VSASDDKTLKVWDMRSGKCLKTLKGHSDFVFC-CDFNPPS-NLIVSGSFDESVKIWEVK 153
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A + + ++ +GS + S G S DG + W+ + G RT A
Sbjct: 154 TGKCLKTLSAHSDPISAVNFNCNGSLIVS-G-SYDGLCRI--WDAASGQCLRTLADEGNP 209
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + L D+ +K WD
Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWD 236
|
|
| UNIPROTKB|A8X8C6 tag-125 "WD repeat-containing protein tag-125" [Caenorhabditis briggsae (taxid:6238)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 55/210 (26%), Positives = 95/210 (45%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S V +SP G ++G + +++++ + DL + H VND A++ +K
Sbjct: 81 SISAVKFSPCGKFLGTSSADKTVKIWNMS---DLSCERTLTGHKLGVNDFAWSADSK--S 135
Query: 468 VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+VT DDK +K++E+ K+ +GH Y C + + S + D ++ W
Sbjct: 136 IVTASDDKTLKIYEVPTVKMAKTLKGHTN--YVFCCNFNPQSSLVVSGSFDESVRIWDVR 193
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVE-WNESEGTIKRTYAGF 583
T G V P H + + ++ DGS L + G S DG LV W+ + G +T
Sbjct: 194 T-GMCVK-TLPAHSDPVSAVSFNRDGS-LITSG-SYDG---LVRIWDTANGQCVKTLVDD 246
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + L+ D+ +K WD
Sbjct: 247 ENPPVAFVKFSPNGKYILSSNLDNTLKLWD 276
|
|
| WB|WBGene00006474 wdr-5.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 54/210 (25%), Positives = 95/210 (45%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S +SP G Y+G + +++++ + + + H VND+A++ ++ C
Sbjct: 89 SISSAKFSPCGKYLGTSSADKTVKIWNM---DHMICERTLTGHKLGVNDIAWSSDSR--C 143
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
VV+ DDK +K++E+ + R +GH Y C + + S + D ++ W
Sbjct: 144 VVSASDDKTLKIFEIVTSRMTKTLKGHNN--YVFCCNFNPQSSLVVSGSFDESVRIWDVK 201
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVE-WNESEGTIKRTYAGF 583
T G + P H + + ++ DGS L + G S DG LV W+ + G +T
Sbjct: 202 T-GMCIK-TLPAHSDPVSAVSFNRDGS-LIASG-SYDG---LVRIWDTANGQCIKTLVDD 254
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA DS +K WD
Sbjct: 255 ENPPVAFVKFSPNGKYILASNLDSTLKLWD 284
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LRZ0 | TPR2_ARATH | No assigned EC number | 0.7566 | 0.9873 | 0.8249 | no | no |
| Q84JM4 | TPR3_ARATH | No assigned EC number | 0.7857 | 0.9820 | 0.8375 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 945 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-32 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-15 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 2e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-06 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 6e-32
Identities = 84/320 (26%), Positives = 125/320 (39%), Gaps = 46/320 (14%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V + F P + LL GS +G I K+WD+ L
Sbjct: 8 HTGG-VTCVAFSPDGK-LLATGSGDGTI----------------KVWDLETGELLRT--- 46
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
K V VA S DG Y+ + I+L+ +R + H V+ +AF+
Sbjct: 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG---HTSYVSSVAFS- 102
Query: 462 PNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520
P+ + + + DK IKVW++ +G+ L GH V S+ F+ S++ DG I
Sbjct: 103 PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG--TFVASSSQDGTI 159
Query: 521 KAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
K W D + GH ++ +S DG +L S + DG L W+ S G
Sbjct: 160 KLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKL--WDLSTGKCLG 213
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN---VNILTSTDAEGGLPNLPRL 635
T G N V F + ED I+ WD+ V L+ L
Sbjct: 214 TLRGHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT-----SL 267
Query: 636 RFSKEGNLLAVTTADNGFKI 655
+S +G LA +AD +I
Sbjct: 268 AWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 61/239 (25%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L+ ++ H S V S+ F P + +L S + I K+
Sbjct: 78 WDLETGECVRTLTGHT-SYVSSVAFSPDGR-ILSSSSRDKTI----------------KV 119
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-- 445
WD+ + + V+ VA+SPDG +V + I+L+ DLR
Sbjct: 120 WDVETGK---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW------DLRTGKCV 170
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPH 503
+ H G VN +AF+ + L + D IK+W+LS K GHE V S+
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSK 560
+ + S + DG I+ W D GH T++ +S DG RL S
Sbjct: 229 PDGYL--LASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 1e-21
Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 23/270 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ---HSQIDAHVGAVNDLAFAYPNK 464
V+ VA+SPDG + I+++ LR H+ V A D +
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY----- 65
Query: 465 LLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ + DK I++W+L +G + GH + V S+ + + + S++ D IK W
Sbjct: 66 ---LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVW 120
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
D + GH + F +S+DG L W+ G T G
Sbjct: 121 --DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL--WDLRTGKCVATLTGH 176
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643
+ N V F L+ D IK WD+ L + N + FS +G L
Sbjct: 177 TGEVNSV-AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN--SVAFSPDGYL 233
Query: 644 LAVTTADNGFKI--LANAIGLRSLRAVENP 671
LA + D ++ L +++L N
Sbjct: 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.4 bits (220), Expect = 1e-18
Identities = 84/312 (26%), Positives = 134/312 (42%), Gaps = 30/312 (9%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
++ S+ F P + LLL GSS+G I LW+L ++L+ S+
Sbjct: 66 DSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLI-----------------KSLEGL 107
Query: 405 VPISVSRVAW-SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463
SVS++A SPDGN + +A + + + S + ++ H +V LAF P+
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPD 166
Query: 464 KLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522
L D IK+W+L +G+ L GH PV S+ + I S + DG I+
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRL 225
Query: 523 WLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKRTY 580
W T G + GH +S DGS L S D + W+ S ++ RT
Sbjct: 226 WDLST-GKLLRSTLSGHSDSVVSSFSPDGSLLASGS----SDGTIRLWDLRSSSSLLRTL 280
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
+G V F + D ++ WD++ +L+S +G + L FS +
Sbjct: 281 SGHSSSVLS-VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 641 GNLLAVTTADNG 652
G+LL +D+G
Sbjct: 340 GSLLVSGGSDDG 351
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-17
Identities = 55/220 (25%), Positives = 87/220 (39%), Gaps = 26/220 (11%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSI-- 500
+ H G V +AF+ KLL T D IKVW+L G L +GH PV +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLL--ATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGT 558
++ S + D I+ L+D GH + +++ +S DG L S
Sbjct: 60 SADGT----YLASGSSDKTIR--LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS- 112
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVG-EDSQIKFWDMD 615
D + W+ G T G ++ V V F F+A +D IK WD+
Sbjct: 113 ---RDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLR 165
Query: 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + G + + FS +G L +++D K+
Sbjct: 166 TGKCVAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.7 bits (200), Expect = 4e-16
Identities = 81/344 (23%), Positives = 133/344 (38%), Gaps = 35/344 (10%)
Query: 289 PPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGST-- 346
TPG + H + + L +P + + SS T L DL +S G T
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
V S+ F P L+ GSS+G I LW+L+ L S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL------------------RSTLSGHS 242
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
SV ++SPDG+ + + I+L+ S+ L + + H +V +AF+ KLL
Sbjct: 243 DSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--LSGHSSSVLSVAFSPDGKLL 299
Query: 467 CVVTCGDDKLIKVWELSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ D +++W+L KL +GHE PV S+ + + + DG I+ W
Sbjct: 300 --ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLW 356
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
T + ++ +S DG + S T D + W+ S G++ R G
Sbjct: 357 DLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGST----DGTVRLWDLSTGSLLRNLDGH 411
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
+ + F + D+ I+ WD+ S +G
Sbjct: 412 TSRVT-SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.8 bits (190), Expect = 8e-15
Identities = 74/329 (22%), Positives = 123/329 (37%), Gaps = 38/329 (11%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L + + +V S+ F P + L S +G I LW+L L
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL------- 191
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
S VS +A+SPDG + + I+L+ S S
Sbjct: 192 ------------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL--STGKLLRST 237
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGHEAPVYSICPHH 504
+ H +V +F+ LL + D I++W+L S L GH + V S+
Sbjct: 238 LSGHSDSV-VSSFSPDGSLL--ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDG 562
+ + S + DG ++ W +T GH +++ +S DGS L S G+
Sbjct: 295 DGKL--LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--- 349
Query: 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622
D + W+ G +T + V F + D ++ WD+ ++L +
Sbjct: 350 DGTIRLWDLRTGKPLKTL--EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407
Query: 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADN 651
D + L FS +G LA ++DN
Sbjct: 408 LDGHTSR--VTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-14
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 34 FFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQD 89
F K E + GDWDE ++LS R S K+ FE+RKQK+LE + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGK 55
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
V +A S + ++S++ G I L+++ T K + T +AF P D ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQV 939
G+ED TI ++++R E L GH +T LA+S L S AD +
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 834 VPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892
V C+A S + + + +G G I ++++ T +++ T +A D +A G+
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 893 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQV 939
D TI ++++ E L GH ++ +AFS IL SS D +
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
V +A S + + S++ I ++++ T K +TT +AF P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
++D TI ++++R + + L GH + +AFS L+SS +D + L
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.8 bits (125), Expect = 6e-07
Identities = 75/415 (18%), Positives = 146/415 (35%), Gaps = 38/415 (9%)
Query: 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
S G + F L+ D IK WD
Sbjct: 35 SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSI-AFSPDGELLLSGSSDGTIKLWD 93
Query: 614 MDN-VNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVEN 670
+DN ++ S + S +GN LLA ++ D K+ + + +R +E
Sbjct: 94 LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153
Query: 671 PPFEALRTPIESVAL----KVSASSAVSSGTPANCKVERSSPVR----PSPIINGVDPT- 721
+ S+A K+ AS + GT + P+ + ++ + +
Sbjct: 154 HS-----ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208
Query: 722 -------SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE------STDTSSKVV 768
S S D + D++ + S+D + ++
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268
Query: 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 828
L ++S + L+ S+ V + + SG + + + W +G L + +
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV--RLWDLETGKL-LSSLTLK 325
Query: 829 NLEEAVPCIALSKNDSYVMSATG--GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886
E V ++ S + S ++S G I L+++ T K + T + ++F P D
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS-VSFSP-DGR 383
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
+++ G+ D T+ ++++ + L GH R+T L FS L S +D + L
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935
T +AF P D ++A G+ D TI ++++ E+ LKGH + +A S L S +
Sbjct: 13 TCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71
Query: 936 DAQVTL 941
D + L
Sbjct: 72 DKTIRL 77
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 30/185 (16%)
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT--WSLDDLPRTVAV-SLHQGSTVISMDFHPSH 356
H + + +P V SS W L + VA + H G V S+ F P
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGE-VNSVAFSPD- 188
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
LL SS+G I LW+L+ +L + V+ VA+SP
Sbjct: 189 GEKLLSSSSDGTIKLWDLST------------GKCLGTLRGHEN-------GVNSVAFSP 229
Query: 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
DG + I+++ + H +V LA++ + + D
Sbjct: 230 DGYLLASGSEDGTIRVWD---LRTGECVQTLSGHTNSVTSLAWS--PDGKRLASGSADGT 284
Query: 477 IKVWE 481
I++W+
Sbjct: 285 IRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 9e-06
Identities = 79/446 (17%), Positives = 147/446 (32%), Gaps = 49/446 (10%)
Query: 473 DDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532
D L+ + +LS GHE + SI + + + S + DG IK W D +
Sbjct: 47 SDSLVSLPDLSSLL---LRGHEDSITSIA--FSPDGELLLSGSSDGTIKLWDLDNGEKLI 101
Query: 533 D--YDAPGHWCTTMLY-SADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKRTYAGFRKKSN 588
+ + S DG+ + +S DG L W+ + G + RT G +
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL--WDLSTPGKLIRTLEGHSESVT 159
Query: 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648
+ + D IK WD+ L++ + L FS +G LL +
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS--SLAFSPDGGLLIASG 217
Query: 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708
+ +G ++R + + LR+ + ++ V SP
Sbjct: 218 SSDG-----------TIRLWDLSTGKLLRSTLSG---------------HSDSVVSSFSP 251
Query: 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ--LAEIVDSGQCRLVTMPESTDTSSK 766
D T R D + + L+ L + S+D + +
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG--SSDGTVR 309
Query: 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 826
+ L L G G + + + + W +G +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369
Query: 827 GVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885
N V ++ S + V S + G + L+++ T ++ T L F P D
Sbjct: 370 HSN----VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DG 424
Query: 886 NIIAIGTEDSTIHIYNVRVDEVKSKL 911
+A G+ D+TI +++++
Sbjct: 425 KSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLEEEKFKESVHKLEKESGF 34
EL LIL++L ++E+ L+KESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
+ H G V +AF+ LL + DD ++VW
Sbjct: 7 LKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
E+ LKGH +T +AFS L S D + L
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.004
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
++ LKGH +T +AFS N+L S D V +
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 945 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.92 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.87 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.85 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.84 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.79 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.78 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.78 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.78 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.76 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.76 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.73 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.69 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.68 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.65 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.64 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.6 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.59 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.57 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.57 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.56 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.54 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.54 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.54 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.51 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.48 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.48 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.48 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.47 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.47 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.46 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.43 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.43 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.42 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.39 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.38 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.38 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.37 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.36 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.36 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.35 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.35 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.34 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.34 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.33 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.28 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.28 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.27 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.2 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.2 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.18 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.15 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.14 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.1 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.09 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.07 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.01 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.01 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.0 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.99 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.97 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.93 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.92 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.91 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.89 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.85 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.83 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.8 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.78 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.76 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.74 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.74 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.72 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.71 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.71 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.68 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.63 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.61 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.59 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.59 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.57 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.55 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.54 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.54 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.53 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.53 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.5 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.48 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.45 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.44 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.44 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.43 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.42 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.39 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.39 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.37 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.34 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.3 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.28 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.26 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.22 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.2 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.18 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.18 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.16 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.13 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.06 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.04 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.04 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 98.03 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.03 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.99 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.98 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.96 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.94 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.94 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.9 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.9 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.83 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.76 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.73 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.69 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.67 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.61 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.56 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.51 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.51 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.5 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.49 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.47 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.46 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.46 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.42 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.41 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.38 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.37 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.35 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.28 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.26 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.2 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.2 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.15 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.13 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.07 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.04 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.93 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.93 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.83 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.73 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 96.73 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 96.73 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.72 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.72 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.59 | |
| PRK10115 | 686 | protease 2; Provisional | 96.51 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.47 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.44 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.36 | |
| PRK10115 | 686 | protease 2; Provisional | 96.32 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.3 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.22 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.21 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.2 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.15 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.03 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.98 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.98 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.94 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.92 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.88 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.86 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.77 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.74 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.62 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.53 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.44 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.4 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.39 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.36 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.34 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.31 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.28 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.16 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.1 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 94.99 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.82 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.68 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.59 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.56 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.47 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.32 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.28 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.28 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.06 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.01 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.88 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.74 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 93.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.15 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.02 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 93.0 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.95 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.67 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.63 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.28 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.1 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.09 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.82 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.63 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.61 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 91.05 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.95 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.9 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.81 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.59 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.54 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.32 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 89.82 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 89.78 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.36 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.36 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 89.04 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 89.0 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.84 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.66 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.12 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 88.01 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 87.6 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 87.3 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 87.29 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 87.08 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 87.04 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 87.03 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 86.75 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 86.49 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 86.47 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 86.46 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 86.35 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 86.23 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.99 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 85.98 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.87 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 85.84 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 84.84 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 84.43 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 83.38 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 83.27 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 83.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 82.95 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 82.55 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 80.26 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 80.03 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-73 Score=551.03 Aligned_cols=490 Identities=21% Similarity=0.316 Sum_probs=413.9
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC---HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHH
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (945)
+.|++||+.|+|+.+||.+|+.+||.|||+.+. ...|.+.|+.|+|++++..+..+. .+++....++.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 569999999999999999999999999999886 899999999999999999998873 4445556679999999999
Q ss_pred hHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhccCCccccccc
Q 002264 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKL 161 (945)
Q Consensus 82 lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~ 161 (945)
||++..|....|+.+||++..++ .++.+++++|++-+..++-....+...-......|.+|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 99999999999999999999999 478999999998776554322222111112457799999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCcCCCCCCCCCCCC
Q 002264 162 AFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPPT 241 (945)
Q Consensus 162 ~~~~~p~~rL~~ll~q~~~~q~~~c~~~~~~~~~~~l~~~h~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~f~~~ 241 (945)
+|++||++||+||++||++.|.|||+ .+..|||.||.|.+.+ +|. .+.+++.
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~q-----ip~----------qt~qil~-------- 221 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQ-----IPS----------QTWQILQ-------- 221 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCccc-----CCc----------hhhhhHh--------
Confidence 99999999999999999999999994 7789999999999966 322 1222222
Q ss_pred cccccchhhhhhcccCCCCCccccccccCCCCCCCCCccccccCCCCCCCCCceecCCCChHHHhhhcCCCCCCcceeec
Q 002264 242 AAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYS 321 (945)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 321 (945)
T Consensus 222 -------------------------------------------------------------------------------- 221 (519)
T KOG0293|consen 222 -------------------------------------------------------------------------------- 221 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccc
Q 002264 322 SSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401 (945)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (945)
.|+++|+.+.||++|+| ||+++.|.+..||++.....+. ..+.
T Consensus 222 --------------------~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k----------------l~~t 264 (519)
T KOG0293|consen 222 --------------------DHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK----------------LKKT 264 (519)
T ss_pred --------------------hCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCccee----------------eeee
Confidence 36668999999999996 9999999999999986544321 1256
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+.+|..+|..+.||||.++|++|+.|..+++||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||
T Consensus 265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWD 340 (519)
T ss_pred eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEec
Confidence 88999999999999999999999999999999999998776332 24668999999999999 899999999999999
Q ss_pred CCCceEEEecCCC-CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 LSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+|..+..+.+-. ..|.+++..+ ||+++++.+.|..|++++.++...+.. .....+|+++++|.|++++++.-.
T Consensus 341 lDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~-- 415 (519)
T KOG0293|consen 341 LDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ-- 415 (519)
T ss_pred CCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc--
Confidence 9998888887754 4589999866 779999999999999999877655543 344567999999999999998875
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcc--eEEEEEc-CCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKS--NGVVQFD-TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
+..+++||+...+.++.+.||.... |. -+|. .+..++++|++|+.|+||+..+|+++..+.+|.. .|++|+|
T Consensus 416 --~qei~LWDl~e~~lv~kY~Ghkq~~fiIr-SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVsw 490 (519)
T KOG0293|consen 416 --DQEIHLWDLEENKLVRKYFGHKQGHFIIR-SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSW 490 (519)
T ss_pred --cCeeEEeecchhhHHHHhhcccccceEEE-eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEec
Confidence 8889999999999999999998743 33 3444 3458999999999999999999999999988764 8999999
Q ss_pred cC-CCCEEEEEECCCcEEEEECCC
Q 002264 638 SK-EGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 638 sp-~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+| +..++|++++||+||||....
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 99 678999999999999998754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-65 Score=477.33 Aligned_cols=488 Identities=20% Similarity=0.326 Sum_probs=406.5
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHH
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (945)
+.||||||.|||+|+.++++.++||+|+++++| ++.|.+.|.+|+||.++..++.| .+|+. -+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 569999999999999999999999999999998 89999999999999999999999 45544 578999999
Q ss_pred HhHhhccCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhccCCcccc
Q 002264 81 YLEALDRQDKAKAVDILVND--LKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFR 158 (945)
Q Consensus 81 ~lell~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (945)
.|||+|.++...|..+||+. +.-|+..+|++|.+|+.||..+.|++.+.+.+ ...++.|..+.+.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999974 44467779999999999999999999888654 23455668888888777665
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCcCCCCCCCCC
Q 002264 159 DKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPF 238 (945)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~q~~~~q~~~c~~~~~~~~~~~l~~~h~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~f 238 (945)
+||+||+.||+||++||..+ |.+|++.++| .|
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQ-----------------------------------GLLPPGt~iD------LF 186 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQ-----------------------------------GLLPPGTTID------LF 186 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhc-----------------------------------CCCCCCceee------ec
Confidence 99999999999999999875 6677777775 67
Q ss_pred CCCcccccchhhhhhcccCCCCCccccccccCCCCCCCCCccccccCCCCCCCCCceecCCCChHHHhhhcCCCCCCcce
Q 002264 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEV 318 (945)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 318 (945)
|+.+ +.. +.. .-..|+.
T Consensus 187 RGkA-A~K------------------~~~----Ee~~Pt~---------------------------------------- 203 (508)
T KOG0275|consen 187 RGKA-AMK------------------DQE----EERYPTQ---------------------------------------- 203 (508)
T ss_pred cchh-hhh------------------hhH----hhhchHH----------------------------------------
Confidence 7663 001 000 0000110
Q ss_pred eecCCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccc
Q 002264 319 TYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQ 398 (945)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (945)
-.....++.++.+.|..|||||+| |++|+.||.|.+||+.+|+......++.
T Consensus 204 ----------------l~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQA----------- 255 (508)
T KOG0275|consen 204 ----------------LARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQA----------- 255 (508)
T ss_pred ----------------hhhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhh-----------
Confidence 001223455668999999999996 9999999999999999998775433321
Q ss_pred cccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 399 ~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
...+.-+..+|.|+.||.|...||+|+.||.|++|.+.+|.+++. +. +|+..|+|+.|+.|+. .+++++.|.++
T Consensus 256 qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD~S--qiLS~sfD~tv 330 (508)
T KOG0275|consen 256 QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRDNS--QILSASFDQTV 330 (508)
T ss_pred hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccCcc--hhhcccccceE
Confidence 123556889999999999999999999999999999999999984 44 8999999999999999 79999999999
Q ss_pred EEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--CeEEEEEEcCCC-CEE
Q 002264 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADG-SRL 553 (945)
Q Consensus 478 ~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~-~~l 553 (945)
++.- .+|+++..+++|.+.|+...|.+ +|..+++++.||+|++|+..+.++..++...+ .+|+++..-|.+ ..+
T Consensus 331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 331 RIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHF 408 (508)
T ss_pred EEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceE
Confidence 9999 99999999999999999999865 77899999999999999999999888776544 377888777744 466
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccC--cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
++|.. .+++++.++. |+.++.|..... +..-+.+++|.|.++++.++|+.++.|...+|.+...+..|.. .
T Consensus 409 iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--d 481 (508)
T KOG0275|consen 409 IVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--D 481 (508)
T ss_pred EEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--c
Confidence 66653 7789998874 677777764332 2355678999999999999999999999999999999988765 7
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
+..++-+|..+.+|+-+.||.+++|.
T Consensus 482 vIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 482 VIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccccCcccchhhhhcccchhhhcC
Confidence 88999999999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=416.27 Aligned_cols=551 Identities=15% Similarity=0.235 Sum_probs=414.0
Q ss_pred eeecCCCCc-cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcc
Q 002264 318 VTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396 (945)
Q Consensus 318 v~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 396 (945)
+.|+.+..- +-++++. .......+|...++-..|||.|-| +|+|...|+|+|||....+.+....
T Consensus 33 ilY~nGksv~ir~i~~~-~~~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKne------------ 98 (603)
T KOG0318|consen 33 ILYTNGKSVIIRNIDNP-ASVDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNE------------ 98 (603)
T ss_pred EEEeCCCEEEEEECCCc-cceeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeee------------
Confidence 444443332 4444432 335555679999999999999985 9999999999999987755554333
Q ss_pred cccccccCCCccEEEEEEcCCCCEEEEEEC--CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 397 ~~~~~~~~h~~~V~~i~~s~~g~~las~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
++--.++|..++|++|++.|++.++ +...+++-.++|..+. .+.+|...|.+++|-|.... +++||+.|
T Consensus 99 -----f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdD 169 (603)
T KOG0318|consen 99 -----FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDD 169 (603)
T ss_pred -----eeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCC
Confidence 3335679999999999999887764 3334444445666555 78899999999999998887 89999999
Q ss_pred CcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec---CCCCeEEEEEEcCCC
Q 002264 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADG 550 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~~ 550 (945)
++|.+|+ ..-+-..++..|...|+|+.|+| ||.++++.+.||++.+||-.+++....+. .|.+.|.+++|+||+
T Consensus 170 n~v~ffeGPPFKFk~s~r~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs 247 (603)
T KOG0318|consen 170 NTVAFFEGPPFKFKSSFREHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS 247 (603)
T ss_pred CeEEEeeCCCeeeeecccccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC
Confidence 9999999 77777788899999999999987 67899999999999999999999998887 788899999999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccC---cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
+.+++++. |.++++||+.+.++++++..... ..+. +-|. ...|++.+.+|.|.+++......+..+.+|.
T Consensus 248 ~~~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 248 TQFLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred ceEEEecC----CceEEEEEeeccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 99999996 99999999999999998875433 1233 3344 5689999999999999999999888888765
Q ss_pred CCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccC
Q 002264 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (945)
Q Consensus 628 ~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (945)
. .|++++.+||+++|++|+.||.|.-|+..++......-.+| ...|..++.+..+.++-.++.+....+....
T Consensus 321 K--~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h-----~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 321 K--SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH-----TNQIKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred c--ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc-----cceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 4 89999999999999999999999999998884332222333 3457777777766665555444333321111
Q ss_pred C-CCCCCccc----CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEe
Q 002264 708 P-VRPSPIIN----GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (945)
Q Consensus 708 ~-~~~~~~~~----~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 782 (945)
. ......+. ........++..++.... ..|.+..- ...+..+. -.-...+++++|+++.++.+
T Consensus 394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~-~~iv~l~~-----~~~~~~~~------~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI-SDIVLLQD-----QTKVSSIP------IGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred CcccccceeecCCCceeEEEcCCCCEEEEEec-CcEEEEec-----CCcceeec------cccccceEEEcCCCCEEEEe
Confidence 1 00000000 001122222222222222 22222221 11111111 23456889999999999999
Q ss_pred eecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccC
Q 002264 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (945)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~ 861 (945)
+.||.+++|.+.......... +. .|.++|++++||||+.+||++. .+++.+||+.+
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~---------------------~~--~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAK---------------------LL--EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred cccceEEEEEecCCcccceee---------------------ee--cccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 999999999875433211111 11 2899999999999999999999 89999999998
Q ss_pred ceEEEEec-CCCCCeeEEEeecCCCceEEEeecCceEEEEecccc-eEEEEecCCCcceeEEEecCCcceeeeecCCceE
Q 002264 862 FKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQV 939 (945)
Q Consensus 862 ~~~~~~~~-~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i 939 (945)
.+.....- -|+..|.|++|+| ++..+|+|+-|-+|.||++... +.+....+|...|+.|.|- |...|+|.|.|..|
T Consensus 519 ~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~i 596 (603)
T KOG0318|consen 519 REVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANI 596 (603)
T ss_pred CceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCccee
Confidence 87743333 3999999999999 9999999999999999999864 3455667899999999998 45789999999999
Q ss_pred EEEec
Q 002264 940 TLCVE 944 (945)
Q Consensus 940 ~vWdl 944 (945)
++|+.
T Consensus 597 K~W~v 601 (603)
T KOG0318|consen 597 KVWNV 601 (603)
T ss_pred EEecc
Confidence 99986
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-54 Score=446.76 Aligned_cols=541 Identities=18% Similarity=0.276 Sum_probs=424.8
Q ss_pred HHHhhhcCCCCCCcceeecCCCCc---cccCCCCCcceEEeec--CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC
Q 002264 303 EQLMKRLRPAPSAEEVTYSSSRHQ---TWSLDDLPRTVAVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR 377 (945)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~--h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~ 377 (945)
++.+......|+ +++.+.....+ +|.+... ..++... |+++|.-++|+|.|. +||+|+.||.|+|||+..+
T Consensus 62 ~d~ita~~l~~d-~~~L~~a~rs~llrv~~L~tg--k~irswKa~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~ 137 (775)
T KOG0319|consen 62 EDEITALALTPD-EEVLVTASRSQLLRVWSLPTG--KLIRSWKAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNG 137 (775)
T ss_pred hhhhheeeecCC-ccEEEEeeccceEEEEEcccc--hHhHhHhhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCC
Confidence 333444444433 33444443333 7887764 5555554 999999999999996 8999999999999999988
Q ss_pred CcccccccccccccccCcccccccccCCCccEEEEEEcCCCC--EEEEEECCCcEEEEEccCCcccccceeeccccccEE
Q 002264 378 DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN 455 (945)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~ 455 (945)
...+ .|.||.+.|.++.|.|+-. .|++|..|+++++||+.+... ....+..|.+.|+
T Consensus 138 ~~th-------------------~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vt 196 (775)
T KOG0319|consen 138 YCTH-------------------SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVT 196 (775)
T ss_pred EEEE-------------------EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhhee
Confidence 7764 4899999999999999754 589999999999999986543 2336778999999
Q ss_pred EEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeec---CCccEEEEEEcCCeEEEEEccCCCee
Q 002264 456 DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSR 531 (945)
Q Consensus 456 ~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~ 531 (945)
+++|++|+. -++++|.|..+.+|| .+.+.+..+... ..+-++.+.+. ..+.++++.|.+|.+++||.+++...
T Consensus 197 sL~~~~d~~--~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~ 273 (775)
T KOG0319|consen 197 SLAFSEDSL--ELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCV 273 (775)
T ss_pred eeeeccCCc--eEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhh
Confidence 999999998 899999999999999 666666555432 33445544443 11469999999999999999887776
Q ss_pred EEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEE-EEcCCCCEEEEEECCCcE
Q 002264 532 VDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV-QFDTTQNHFLAVGEDSQI 609 (945)
Q Consensus 532 ~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i 609 (945)
...... ...+..+...+....++..+. +..+.++|.++.++.+.+.|.++ .|..+ .+.|+.++++++++.+.+
T Consensus 274 ~~~~~~~~~e~~~~~~~~~~~~~l~vta----eQnl~l~d~~~l~i~k~ivG~nd-EI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 274 YKQRQSDSEEIDHLLAIESMSQLLLVTA----EQNLFLYDEDELTIVKQIVGYND-EILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred hhhccCCchhhhcceeccccCceEEEEc----cceEEEEEccccEEehhhcCCch-hheeeeecCCccceEEEEeCCCce
Confidence 544333 233555555554444444443 88999999999999999999888 45555 457888999999999999
Q ss_pred EEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccc
Q 002264 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (945)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g 689 (945)
++|+..+..+. .+.+| ...|.++....+|-+|++|+.|.++++|.++++.... ..-.....+.+.|.+++++..|
T Consensus 349 r~y~~~~~~c~-ii~GH--~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~--~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 349 RLYTLPTSYCQ-IIPGH--TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS--LCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred EEEecCCCceE-EEeCc--hhheeeeeecccCcEEEEecCCceEEEEEecCCcchh--hhhhhhcccccccceeeecccC
Confidence 99998887766 55544 4589999977788999999999999999885442211 1111222344568888886554
Q ss_pred cceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecC-CCCCCccceE
Q 002264 690 SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP-ESTDTSSKVV 768 (945)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 768 (945)
.. .+++++.|+++++|++....+......+... ....|...|.
T Consensus 424 as------------------------------------ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN 467 (775)
T KOG0319|consen 424 AS------------------------------------FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN 467 (775)
T ss_pred cc------------------------------------EEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence 33 3489999999999999873333322222110 1134899999
Q ss_pred EEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEe
Q 002264 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (945)
Q Consensus 769 ~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~ 848 (945)
+++++|+.+.+++++.|++.++|+++.. . +...+.| |...|+++.|++..+.+|+
T Consensus 468 ~Vaia~ndkLiAT~SqDktaKiW~le~~----------------------~-l~~vLsG--H~RGvw~V~Fs~~dq~laT 522 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGSQDKTAKIWDLEQL----------------------R-LLGVLSG--HTRGVWCVSFSKNDQLLAT 522 (775)
T ss_pred ceEecCCCceEEecccccceeeecccCc----------------------e-EEEEeeC--CccceEEEEeccccceeEe
Confidence 9999999999999999999999986421 1 1223666 9999999999999999999
Q ss_pred cC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCc
Q 002264 849 AT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 927 (945)
Q Consensus 849 ~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 927 (945)
+| |.+|+||.+.++.++.+|.||...|..+.|-. ++..|++++.||-|++|++.+++|+.++.+|.+.|++++-++++
T Consensus 523 ~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 523 CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred ccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence 99 89999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCceEEEEe
Q 002264 928 NILVSSGADAQVTLCV 943 (945)
Q Consensus 928 ~~l~s~~~Dg~i~vWd 943 (945)
.+++||+.||.|.+|.
T Consensus 602 ~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEecCCCeEEEEee
Confidence 9999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=444.39 Aligned_cols=536 Identities=16% Similarity=0.245 Sum_probs=435.2
Q ss_pred EEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCc
Q 002264 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (945)
Q Consensus 350 v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~ 429 (945)
++||++|+ .|++.. ...|.+-|+.+++.... ..-.+-...+++++.+||+.+|++++..+.
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~-----------------s~~~ed~d~ita~~l~~d~~~L~~a~rs~l 85 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALP-----------------SGSNEDEDEITALALTPDEEVLVTASRSQL 85 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceecc-----------------cCCccchhhhheeeecCCccEEEEeeccce
Confidence 89999999 588765 34688899999876310 112345678999999999999999999999
Q ss_pred EEEEEccCCcccccceeecc-ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCC
Q 002264 430 IQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKEN 507 (945)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~ 507 (945)
+++|++.+|+.++ .+.. |.+||.-++|+|.+. .+++|+.|+.++||| ..+.+.+.|+||.+.|.++.|+|..+
T Consensus 86 lrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 86 LRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred EEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence 9999999998887 4555 999999999999997 999999999999999 88899999999999999999999888
Q ss_pred ccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc
Q 002264 508 IQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586 (945)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~ 586 (945)
...|++|..|+++++||+.+... ...+..|.+.|+++.+++|+..+++++. |..+.+||+.+.+..++++...
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye-- 234 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE-- 234 (775)
T ss_pred hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh--
Confidence 78899999999999999986554 6677889999999999999999999996 8999999998877777766544
Q ss_pred ceEEEEEcCC-----CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 587 SNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 587 ~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+.++.+-++ +.+++++|.+|.+++||.+++++........ ...+..+...+....++..+.|..+.++|.++.
T Consensus 235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l 313 (775)
T KOG0319|consen 235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL 313 (775)
T ss_pred heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc
Confidence 3666667666 6799999999999999999998877665443 224666666666666677778889999999887
Q ss_pred ccccccccCCccccccCcceeeee-cccccceeccCCCCCccccccCCCCCCCcccCCC-CC----ccCCCCCccccCCC
Q 002264 662 LRSLRAVENPPFEALRTPIESVAL-KVSASSAVSSGTPANCKVERSSPVRPSPIINGVD-PT----SRSMDKPRTVDDVT 735 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v~~-s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~l~~~~~d 735 (945)
+..+.+.|.... |..+.| .|+.+.++.+......++......... ++.+.. .. ....|-++++++.|
T Consensus 314 -~i~k~ivG~ndE-----I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 314 -TIVKQIVGYNDE-----ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKD 386 (775)
T ss_pred -EEehhhcCCchh-----heeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCC
Confidence 677777776554 556655 567788888877777776532222222 444332 21 23456789999999
Q ss_pred CCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC-CeEEEeeecCeEEEEeecCCCCCCCCceeeeecccccc
Q 002264 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (945)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (945)
.++++|.+++ .......+....+|...|.+++++..+ ..+++++.|+++++|+++....... ..++.
T Consensus 387 ~svilWr~~~----~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~~~~~ 454 (775)
T KOG0319|consen 387 KSVILWRLNN----NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------PIVLT 454 (775)
T ss_pred ceEEEEEecC----CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------cceeh
Confidence 9999999943 222223333445699999999998765 5688999999999999875221100 00000
Q ss_pred CCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeec
Q 002264 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (945)
Q Consensus 815 ~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~ 893 (945)
.......|...|++++++|+.+++|+|| |.+.+||+++......++.||...|.||.|++ ..+++||+|.
T Consensus 455 --------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~Sg 525 (775)
T KOG0319|consen 455 --------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSG 525 (775)
T ss_pred --------hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccC
Confidence 0112223999999999999999999999 88899999999999999999999999999999 8999999999
Q ss_pred CceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 894 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
|++|+||.+.+..|++++.||+..|..+.|-.+|+.|+|++.||.+++|+.
T Consensus 526 D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 526 DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999999986
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=411.07 Aligned_cols=375 Identities=22% Similarity=0.369 Sum_probs=304.8
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
++.+.....+...+-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.+.... ...++|.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~-------------------~t~KgH~ 157 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPL-------------------FTCKGHK 157 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcc-------------------eeecCCc
Confidence 44444445555666789999999999999996 999999999999999987765 3488999
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec-----CCCeeEEEEEeCCCcEEEEe
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~~~~~~l~s~s~d~~i~vwd 481 (945)
..|.|++|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ... +|++++.||+|+|||
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd 233 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWD 233 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEE
Confidence 9999999999999999999999999999999987654 6889999999999976 455 899999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
..++++..+.+|..+|+|++|-. + .++++|+.|++|++|+...+.....+.+|.+.|+.++.+-| +++-.+
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd--y~LRtg--- 305 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD--YVLRTG--- 305 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch--hhhhcc---
Confidence 88899999999999999999843 3 59999999999999999888888899999999998887654 221111
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+|.|.++..-..++ .. .+.+..+ ....-..
T Consensus 306 -------------------------------af~~t~~~~~~~se--------~~-~~Al~rY----------~~~~~~~ 335 (480)
T KOG0271|consen 306 -------------------------------AFDHTGRKPKSFSE--------EQ-KKALERY----------EAVLKDS 335 (480)
T ss_pred -------------------------------ccccccccCCChHH--------HH-HHHHHHH----------HHhhccC
Confidence 12222211100000 00 0000000 0011113
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCC
Q 002264 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (945)
Q Consensus 641 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (945)
+..|++|++|.++.+|+.....+.+.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~------------------------------------------------------ 361 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPIT------------------------------------------------------ 361 (480)
T ss_pred cceeEEecCCceEEEecccccccchh------------------------------------------------------
Confidence 46788888888888887643211100
Q ss_pred CccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCC
Q 002264 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (945)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~ 800 (945)
T Consensus 362 -------------------------------------------------------------------------------- 361 (480)
T KOG0271|consen 362 -------------------------------------------------------------------------------- 361 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEE
Q 002264 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA 879 (945)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~ 879 (945)
...+ |..-|..+.||||++++|++| |..|++||..+|+.+.+|+||-+.|+.++
T Consensus 362 -----------------------rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 362 -----------------------RMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred -----------------------hhhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 0222 778889999999999999999 88999999999999999999999999999
Q ss_pred eecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 880 ~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
||. |.++|++|+.|.+++||++++.++...|.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=396.07 Aligned_cols=496 Identities=15% Similarity=0.234 Sum_probs=397.4
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
.+.+...|++++.||+|. +|++-...|...+-++.....++... ...+|.|+.|||||+
T Consensus 51 ~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPng~ 109 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPNGK 109 (893)
T ss_pred EeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCCCc
Confidence 345889999999999998 56666788888888887766554211 246899999999999
Q ss_pred EEEEEECCCcEEEEEccCCcc-----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC--CceEEEec
Q 002264 420 YVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--GRKLFNFE 491 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~--~~~~~~~~ 491 (945)
++|.|.. ..+.||....... .....++.+|-..|+++.|+.|.+ +|++||.|.++++|+ .. +-....+.
T Consensus 110 ~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~ 186 (893)
T KOG0291|consen 110 FFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALN 186 (893)
T ss_pred EEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEecc
Confidence 9999865 4699998754322 223346778999999999999999 999999999999999 33 33367889
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-----------------------CCe-----e------EEecCC
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----------------------MGS-----R------VDYDAP 537 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------------------~~~-----~------~~~~~~ 537 (945)
+|...|..+-|.. +...+++.+.||.+.+|.... ++. . .-+...
T Consensus 187 gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 187 GHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred CCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 9999999887755 557799999999999997761 111 0 011122
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC-CCcEEEEECCC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDN 616 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 616 (945)
...+++.+|++..+.|+++-. .|...+|++....+++.+.-... .+..++|+..|.+++.|+. =|.+.||+..+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 357899999998888888875 88899999999999998876655 7888999999999999885 48999999998
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
...+...++| ...+++++++|||+++|+|++||.|+|||...+ -++.++..|+. .++.+.|+..|+.+
T Consensus 340 EsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts-----~Vt~v~f~~~g~~l---- 407 (893)
T KOG0291|consen 340 ESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTEHTS-----GVTAVQFTARGNVL---- 407 (893)
T ss_pred cceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEeccCCC-----ceEEEEEEecCCEE----
Confidence 8777666655 558999999999999999999999999999988 67777776655 47888888776655
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
++.+.||+|+.||+.. ...++.++.| ..-...+++..|.|
T Consensus 408 ---------------------------------lssSLDGtVRAwDlkR---YrNfRTft~P----~p~QfscvavD~sG 447 (893)
T KOG0291|consen 408 ---------------------------------LSSSLDGTVRAWDLKR---YRNFRTFTSP----EPIQFSCVAVDPSG 447 (893)
T ss_pred ---------------------------------EEeecCCeEEeeeecc---cceeeeecCC----CceeeeEEEEcCCC
Confidence 6899999999999986 3445555544 34556788999999
Q ss_pred CeEEEeeec-CeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeE
Q 002264 777 VGLLALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (945)
Q Consensus 777 ~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i 854 (945)
..+.+++.| -.|.+| +.++|+++.. +.| |.++|.+++|+|+|..||++| |.+|
T Consensus 448 elV~AG~~d~F~IfvW----------------------S~qTGqllDi-LsG--HEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVW----------------------SVQTGQLLDI-LSG--HEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred CEEEeeccceEEEEEE----------------------EeecCeeeeh-hcC--CCCcceeeEEccccCeEEeccccceE
Confidence 987777776 345555 5567776654 777 999999999999999999999 9999
Q ss_pred EEEeccCc-eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC--------------------
Q 002264 855 SLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG-------------------- 913 (945)
Q Consensus 855 ~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~-------------------- 913 (945)
++||+-.. ..+.++. +...++.++|+| +|+-||+++-||.|.+||+..+..+..+.+
T Consensus 503 RiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 99998754 3455565 677899999999 999999999999999999987655433322
Q ss_pred CCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 914 HQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 914 h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.....+.+++|+||..+++||..+.|.+|+.+
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 23578999999999999999999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=395.75 Aligned_cols=509 Identities=14% Similarity=0.221 Sum_probs=408.5
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..+.+.+..+.+|.|+.|||+|+ ++|+|. ..-+.||.......-.-.+| ...+.+.+|-..|.++.|
T Consensus 87 r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~pF-----------vl~r~~~g~fddi~si~W 153 (893)
T KOG0291|consen 87 RSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFNPF-----------VLHRTYLGHFDDITSIDW 153 (893)
T ss_pred ceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccCcc-----------eEeeeecCCccceeEEEe
Confidence 45667778889999999999999 466654 67899998754332111111 133568899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCC-----------
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----------- 483 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~----------- 483 (945)
|.|.++|++|+.|.++++|.++..+.+... .+.+|+..|.++-|..+.. -++|.+.||.+.+|..+
T Consensus 154 s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~-~l~gHkd~VvacfF~~~~~--~l~tvskdG~l~~W~~~~~P~~~~~~~k 230 (893)
T KOG0291|consen 154 SDDSRLLVTGSRDLSARLFGVDGNKNLFTY-ALNGHKDYVVACFFGANSL--DLYTVSKDGALFVWTCDLRPPELDKAEK 230 (893)
T ss_pred ccCCceEEeccccceEEEEEeccccccceE-eccCCCcceEEEEeccCcc--eEEEEecCceEEEEEecCCCcccccccc
Confidence 999999999999999999999887764433 5789999999999999988 78999999999999722
Q ss_pred -------------Cce-----------EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC
Q 002264 484 -------------GRK-----------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539 (945)
Q Consensus 484 -------------~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 539 (945)
++. ..-+......|++.+|++.. ..|++|-..|...+|.+.....+..+.....
T Consensus 231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--~~lvvgFssG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--NLLVVGFSSGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--eEEEEEecCCeeEEEecCCceEEEEeecccc
Confidence 111 01112233678999998754 7899999999999999999999999999989
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
+|..++|+..|.+++.++. +-|++.+|+..+...+.+.++|.. .+.+++++|||+++++|++||+|+|||..++-+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred eeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 9999999999999999985 478999999999999999999987 899999999999999999999999999999999
Q ss_pred EEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCC
Q 002264 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (945)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~ 699 (945)
+.++..|.. .|+.+.|+..|+.+++.+-||+|+.||+... +..+++..+... ...+++..|.|..+.
T Consensus 385 ~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~----QfscvavD~sGelV~------ 451 (893)
T KOG0291|consen 385 FVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPI----QFSCVAVDPSGELVC------ 451 (893)
T ss_pred EEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecCCCce----eeeEEEEcCCCCEEE------
Confidence 999987654 8999999999999999999999999999877 666776654332 345777777777764
Q ss_pred CccccccCCCCCCCcccCCCCCccCCCCCccccCCC-CCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCe
Q 002264 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT-DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (945)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 778 (945)
+|+.| =.|.+|++..+.... .+. ||.++|.+++|+|+|..
T Consensus 452 -------------------------------AG~~d~F~IfvWS~qTGqllD-----iLs---GHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 452 -------------------------------AGAQDSFEIFVWSVQTGQLLD-----ILS---GHEGPVSGLSFSPDGSL 492 (893)
T ss_pred -------------------------------eeccceEEEEEEEeecCeeee-----hhc---CCCCcceeeEEccccCe
Confidence 33333 468899987532221 223 49999999999999999
Q ss_pred EEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEE
Q 002264 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (945)
Q Consensus 779 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iw 857 (945)
|++++.|.+|++|++-... ++... +. +...+.+++|+|||+.+|++. ||.|.+|
T Consensus 493 LaS~SWDkTVRiW~if~s~--------------------~~vEt--l~---i~sdvl~vsfrPdG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSS--------------------GTVET--LE---IRSDVLAVSFRPDGKELAVATLDGQITFF 547 (893)
T ss_pred EEeccccceEEEEEeeccC--------------------ceeee--Ee---eccceeEEEEcCCCCeEEEEEecceEEEE
Confidence 9999999999999863211 11111 11 567899999999999999999 9999999
Q ss_pred eccCceEEEEecC--------------------CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC----
Q 002264 858 NMMTFKVMTTFMS--------------------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG---- 913 (945)
Q Consensus 858 d~~~~~~~~~~~~--------------------h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~---- 913 (945)
|...+.....+.+ .....+.+++|+ ||..|.+|+..+.|++|++.++-+++.++-
T Consensus 548 d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 548 DIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred EhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 9887666544432 123589999999 899999999999999999987755544320
Q ss_pred ----------------------------------------------------CCcceeEEEecCCcceeeeecCCceEEE
Q 002264 914 ----------------------------------------------------HQKRITGLAFSTSLNILVSSGADAQVTL 941 (945)
Q Consensus 914 ----------------------------------------------------h~~~V~~l~~s~dg~~l~s~~~Dg~i~v 941 (945)
..-.|++|.|+|.|+-++.++..| +.|
T Consensus 627 sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~I 705 (893)
T KOG0291|consen 627 SLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLI 705 (893)
T ss_pred chhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEE
Confidence 012488999999999999999999 566
Q ss_pred Eec
Q 002264 942 CVE 944 (945)
Q Consensus 942 Wdl 944 (945)
|.+
T Consensus 706 Ysl 708 (893)
T KOG0291|consen 706 YSL 708 (893)
T ss_pred Eec
Confidence 665
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-48 Score=401.96 Aligned_cols=508 Identities=14% Similarity=0.238 Sum_probs=398.6
Q ss_pred cccCCCCCcce-EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 327 TWSLDDLPRTV-AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 327 ~~~~~~~~~~~-~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
+|++....... +.......+|+|++-+|+.. +||+|-.||.|+||+..++.... .+.||
T Consensus 47 ~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngH 106 (888)
T KOG0306|consen 47 IWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGH 106 (888)
T ss_pred EEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eeccc
Confidence 88887653222 22334557999999999987 79999999999999998775542 38899
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
..+|+++.|+..|..||+|+.|+.|.+||+-...... .+.||+..|+.+-|..+.+ ++++.|.|+.|++|| .+.
T Consensus 107 K~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tq 181 (888)
T KOG0306|consen 107 KAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQ 181 (888)
T ss_pred ccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccc
Confidence 9999999999999999999999999999997654333 6889999999999998677 899999999999999 888
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee--------------EEecCCC------------
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR--------------VDYDAPG------------ 538 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~~~~------------ 538 (945)
.+..+.-.|.+.++.+++.+ +.+++++.|+.+++|++...... ......+
T Consensus 182 hCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 182 HCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred eeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 89999999999999999865 57999999999999998211000 0000000
Q ss_pred ---------------------------------------------------------------CeEEEEEEcCCCC---E
Q 002264 539 ---------------------------------------------------------------HWCTTMLYSADGS---R 552 (945)
Q Consensus 539 ---------------------------------------------------------------~~i~~~~~s~~~~---~ 552 (945)
..+.++.|.|.++ .
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 1233333433322 1
Q ss_pred EEEEeecCCCCceEEEEeCCCCcee---------eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIK---------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
|+.. .++.+..|.+...... ..+.+|.. .|..++++.+...+++| ..+.|.+|+..+.+++.++
T Consensus 338 lv~l-----~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi 410 (888)
T KOG0306|consen 338 LVLL-----ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTI 410 (888)
T ss_pred EEEe-----ecCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEe
Confidence 2221 1444555554431111 24556665 78999999876555544 4678999999999999998
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
... .+.+..|-|.++++++|...|.+.+||+.+. ..+.+.+.| .+.|.+++.+||++..
T Consensus 411 ~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AH-----dgaIWsi~~~pD~~g~----------- 469 (888)
T KOG0306|consen 411 TCG----YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAH-----DGAIWSISLSPDNKGF----------- 469 (888)
T ss_pred ccc----cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhcc-----ccceeeeeecCCCCce-----------
Confidence 653 6789999999999999999999999999887 455555444 4468888888887765
Q ss_pred cccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeec-CCcc-eeeecCC--CCCCccceEEEEEecCCCeE
Q 002264 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVD-SGQC-RLVTMPE--STDTSSKVVRLLYTNSAVGL 779 (945)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~-~~~~~~~--~~~~~~~v~~l~~s~dg~~l 779 (945)
++|+.|.+|++|+..-... ++.. +.+.+.. .-.-...|.++.+||||++|
T Consensus 470 --------------------------vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 470 --------------------------VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLL 523 (888)
T ss_pred --------------------------EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEE
Confidence 6888899999999764333 1111 1111110 00134689999999999999
Q ss_pred EEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEe
Q 002264 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFN 858 (945)
Q Consensus 780 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd 858 (945)
+++--|.++++|-++.-.+ ...+.| |.-+|.|+..|||++.+++|| |..|+||-
T Consensus 524 aVsLLdnTVkVyflDtlKF-----------------------flsLYG--HkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKF-----------------------FLSLYG--HKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred EEEeccCeEEEEEecceee-----------------------eeeecc--cccceeEEeccCCcCeEEeccCCCceEEec
Confidence 9999999999997643221 111445 999999999999999999999 88899999
Q ss_pred ccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCce
Q 002264 859 MMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (945)
Q Consensus 859 ~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~ 938 (945)
++-|.|.+.+-+|.+.|.++.|.| ....+.+++.|+.|+-||-.+.++++.+.+|...|++++.+|+|.+++|+|.|.+
T Consensus 579 LdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 579 LDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred cccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 002264 939 VTLCV 943 (945)
Q Consensus 939 i~vWd 943 (945)
|++|.
T Consensus 658 IRlwE 662 (888)
T KOG0306|consen 658 IRLWE 662 (888)
T ss_pred eEeee
Confidence 99996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=377.12 Aligned_cols=504 Identities=15% Similarity=0.267 Sum_probs=396.1
Q ss_pred EEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCc
Q 002264 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (945)
Q Consensus 350 v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~ 429 (945)
+--.|.|+.+|.+.+ ..|.+-++++.... .++.+|...++-..|||.|.|+|+|...|+
T Consensus 24 ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~-------------------~iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNG--KSVIIRNIDNPASV-------------------DIYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeCC--CEEEEEECCCccce-------------------eeeccccceeEEEEeCCCceEEeecCCcCc
Confidence 344677887777754 67888888776543 348889999999999999999999999999
Q ss_pred EEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC--CC--cEEEEeCCCceEEEecCCCCCEEEEEeeec
Q 002264 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DK--LIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (945)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~--d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 505 (945)
|+|||....+.+ ...+++.-.++|.+++|+.|+++ ++..++ ++ .+.+|| +|..+..+.+|...|+++.|-|+
T Consensus 83 vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 83 VRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred EEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCC
Confidence 999998763322 22256677899999999999994 444442 33 345565 67778889999999999999887
Q ss_pred CCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec---c
Q 002264 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---G 582 (945)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~---~ 582 (945)
.. -++++|++|++|.+|+-.-.+-..++..|...|+++.|+|||.++++++. |+.+.+||-.+++.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 54 68999999999999975555555566778889999999999999999997 9999999999999999988 6
Q ss_pred ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC-CCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|.+ .|..++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|.|.+++...+
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 665 7999999999999999999999999999999999988765431 122345564 568899999999999999988
Q ss_pred ccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccc
Q 002264 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 741 (945)
. .++.+.+|.. .|++++.+++++.+ ++++.||.|.-|
T Consensus 311 ~-~~~~i~GHnK-----~ITaLtv~~d~~~i-------------------------------------~SgsyDG~I~~W 347 (603)
T KOG0318|consen 311 S-VLKVISGHNK-----SITALTVSPDGKTI-------------------------------------YSGSYDGHINSW 347 (603)
T ss_pred C-hhheeccccc-----ceeEEEEcCCCCEE-------------------------------------EeeccCceEEEE
Confidence 4 7888888765 48899999888766 699999999999
Q ss_pred ccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCC--------ceeeee-----
Q 002264 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG--------KATASA----- 808 (945)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~--------~~~~~~----- 808 (945)
+.......... - .+|...|.+++.+..+. +++.+.|.++++.++..+...... ..++..
T Consensus 348 ~~~~g~~~~~~----g---~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 348 DSGSGTSDRLA----G---KGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred ecCCccccccc----c---ccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 98753332211 1 23899999999987666 888888999999987553322211 011100
Q ss_pred -------ccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceE--EEEecCCCCCeeEE
Q 002264 809 -------VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFL 878 (945)
Q Consensus 809 -------~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~--~~~~~~h~~~i~~l 878 (945)
.+.+..-.++- . ...-.....++|++|++..+|+|+ |++|+||.+...+. ...+..|.++|+++
T Consensus 420 avv~~~~~iv~l~~~~~~-~-----~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKV-S-----SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred EEEEecCcEEEEecCCcc-e-----eeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 11111111110 0 001234578999999999999999 89999999986553 33455799999999
Q ss_pred EeecCCCceEEEeecCceEEEEecccceEEEE-ecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 879 ~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
+||| |+.+||+|...+.|-+||+.+.+.... +.-|+..|.+|+|+|+..++|||+-|.+|.||++
T Consensus 494 aySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 494 AYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 9999 999999999999999999999876433 4449999999999999999999999999999986
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=378.74 Aligned_cols=544 Identities=15% Similarity=0.221 Sum_probs=412.1
Q ss_pred CcEEEEEEe-CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 345 STVISMDFH-PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 345 ~~V~~v~fs-p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
+++..+..+ ..|++ ++ ++.-..|.+||+++|+.... + ....-...|+|+.-+|+.-.||+
T Consensus 22 aN~~~~~~~~~~Gr~-va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAV 82 (888)
T KOG0306|consen 22 ANINFVVKRSGKGRA-VA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAV 82 (888)
T ss_pred cceeEEEeecCCCcE-EE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEE
Confidence 344444443 35775 33 33457899999999965421 1 01123468999999999999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
|..||.|++|+..++...- ++.+|...|+.+.|...|. .|+|||.|+.|.+|| ....-+.++.||...|+..-|
T Consensus 83 GYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 83 GYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF 157 (888)
T ss_pred EecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc
Confidence 9999999999998875444 7889999999999999999 899999999999999 777778999999999998887
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--------
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-------- 574 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-------- 574 (945)
.. +..++++.+.|+.|++||+.+..+..+...|...+..+++.+ +.+++++. ++.+.+|++...
T Consensus 158 ~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~ 229 (888)
T KOG0306|consen 158 LN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNR 229 (888)
T ss_pred cC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccc
Confidence 64 347999999999999999999999999999999999999987 67777765 888999998311
Q ss_pred ----ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE--------------E--------------
Q 002264 575 ----TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--------------S-------------- 622 (945)
Q Consensus 575 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~-------------- 622 (945)
+...++........-.+...++++++++-+.|..+.+|.+.+.+.+. .
T Consensus 230 ~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~ 309 (888)
T KOG0306|consen 230 YISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSD 309 (888)
T ss_pred cceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHH
Confidence 11112222222233346667778889999999999999886532110 0
Q ss_pred ----eecCCCCCCccEEEEcCCCC---EEEEEECCCcEEEEECCCCccc---cccccCCccccccCcceeeeecccccce
Q 002264 623 ----TDAEGGLPNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLRS---LRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 623 ----~~~~~~~~~v~~v~~sp~g~---~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
+..-.....+.++.|-|.++ .|+. -.++++..+.+...... ...........+++.|.+++++.+...+
T Consensus 310 ~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~ 388 (888)
T KOG0306|consen 310 EIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL 388 (888)
T ss_pred HHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee
Confidence 00001123577888888543 3344 55778888887652111 1111223445677789999999999988
Q ss_pred eccCCCCCccccccCCCCCCCccc---CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEE
Q 002264 693 VSSGTPANCKVERSSPVRPSPIIN---GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769 (945)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 769 (945)
+++.+....-|.+ ...+.+..+. .....+.|.++.+++|...|.+.++|+.+.......+ +|.+.|..
T Consensus 389 ~Sga~~SikiWn~-~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--------AHdgaIWs 459 (888)
T KOG0306|consen 389 ASGAGESIKIWNR-DTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR--------AHDGAIWS 459 (888)
T ss_pred eecCCCcEEEEEc-cCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh--------ccccceee
Confidence 8877665554433 3333333333 2345688999999999999999999998643333322 29999999
Q ss_pred EEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEec
Q 002264 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (945)
Q Consensus 770 l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~ 849 (945)
++.+||++.+++++.|.+|++|++..... ..|... ++..... +..+. -...|.|+.+||||++||++
T Consensus 460 i~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~-----k~lsl~~----~rtLe---l~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK-----KVLSLKH----TRTLE---LEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred eeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc-----eeeeecc----ceEEe---ccccEEEEEEcCCCcEEEEE
Confidence 99999999999999999999999754221 000000 0000000 01111 36789999999999999999
Q ss_pred C-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcc
Q 002264 850 T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (945)
Q Consensus 850 s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 928 (945)
- |++++||-+++.+....+-||.-+|.|+..|| |+++++||+.|++|+||-++=|.|.+.+.+|.+.|.+|.|.|+..
T Consensus 527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred eccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 8 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCceEEEEec
Q 002264 929 ILVSSGADAQVTLCVE 944 (945)
Q Consensus 929 ~l~s~~~Dg~i~vWdl 944 (945)
.++|+|.|+.|+-||.
T Consensus 606 ~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDG 621 (888)
T ss_pred eEEEecCcceEEeech
Confidence 9999999999999985
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=354.76 Aligned_cols=297 Identities=17% Similarity=0.309 Sum_probs=267.2
Q ss_pred cccCCCCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
+|+++. ..+.++.. |...|.|++|||||+ .||+|+.||+|++||..+|+++. ..+.+|
T Consensus 141 ~WD~~T--eTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g------------------~~l~gH 199 (480)
T KOG0271|consen 141 LWDLDT--ETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIG------------------RALRGH 199 (480)
T ss_pred eeccCC--CCcceeecCCccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCccc------------------ccccCc
Confidence 898886 55566655 999999999999999 59999999999999999998864 448899
Q ss_pred CccEEEEEEcC-----CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 406 PISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 406 ~~~V~~i~~s~-----~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
...|++++|-| ..++||+++.||.|+|||+..+.++. .+.+|+.+|+|+.|--+| ++++||.|++|++|
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~---~lsgHT~~VTCvrwGG~g---liySgS~DrtIkvw 273 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR---TLSGHTASVTCVRWGGEG---LIYSGSQDRTIKVW 273 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE---EeccCccceEEEEEcCCc---eEEecCCCceEEEE
Confidence 99999999976 57899999999999999999988776 788999999999997655 79999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEee-----------ecC-----------------------CccEEEEEEcCCeEEEEEc
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPH-----------HKE-----------------------NIQFIFSTAIDGKIKAWLY 525 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~-----------~~~-----------------------~~~~l~s~~~dg~i~iwd~ 525 (945)
+ ..|.+...+++|...|+.++.+ +.+ .+..+++|+.|.++.+|+.
T Consensus 274 ~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p 353 (480)
T KOG0271|consen 274 RALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP 353 (480)
T ss_pred EccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecc
Confidence 9 8999999999999999999875 111 2346999999999999986
Q ss_pred cCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 526 DTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 526 ~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
.... ++..+.+|...|+.+.||||+++++++++ |..|++||.++|+.+.+|++|-. .+..++|+.|.+++++|+
T Consensus 354 ~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF----DkSVkLW~g~tGk~lasfRGHv~-~VYqvawsaDsRLlVS~S 428 (480)
T KOG0271|consen 354 FKSKKPITRMTGHQALVNHVSFSPDGRYIASASF----DKSVKLWDGRTGKFLASFRGHVA-AVYQVAWSADSRLLVSGS 428 (480)
T ss_pred cccccchhhhhchhhheeeEEECCCccEEEEeec----ccceeeeeCCCcchhhhhhhccc-eeEEEEeccCccEEEEcC
Confidence 5544 56678889999999999999999999998 89999999999999999999987 899999999999999999
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
.|.++++|++++.++...+.+|.. .|.++.|+|||..+++|+.|..+++|.
T Consensus 429 kDsTLKvw~V~tkKl~~DLpGh~D--EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDLPGHAD--EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccCCCCCc--eEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999998888876654 999999999999999999999999994
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=357.99 Aligned_cols=505 Identities=15% Similarity=0.206 Sum_probs=363.9
Q ss_pred eEEeec-CCCcEEEEEEeCCCCeEEEEEe--CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 337 ~~~~~~-h~~~V~~v~fsp~g~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
..++.. |..+++|++||++|+| +|+|- ..-.++||++.....+.+ +..|...|+|++
T Consensus 70 Q~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcva 129 (1080)
T KOG1408|consen 70 QSHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVA 129 (1080)
T ss_pred hhheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeee
Confidence 344444 7789999999999996 99985 456899999988776643 778999999999
Q ss_pred EcCCCCEEEEEEC--CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE--
Q 002264 414 WSPDGNYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-- 488 (945)
Q Consensus 414 ~s~~g~~las~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~-- 488 (945)
|+|.++|+++.+. |-.|.+||++...... -..-...|..++|+.||. |++|.+ ...|++|. ..++...
T Consensus 130 Fsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~Kykdp 202 (1080)
T KOG1408|consen 130 FSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDP 202 (1080)
T ss_pred ecCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCC
Confidence 9999999998765 4467888876543222 223456799999999999 899887 78899998 3332100
Q ss_pred -----------Ee------------------------cCC-----------------CCCEEEEEeeecCCccEEEEEEc
Q 002264 489 -----------NF------------------------EGH-----------------EAPVYSICPHHKENIQFIFSTAI 516 (945)
Q Consensus 489 -----------~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~ 516 (945)
.+ .|| .....||+++ .++|+.|+.
T Consensus 203 iPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa 278 (1080)
T KOG1408|consen 203 IPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCA 278 (1080)
T ss_pred ccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeec
Confidence 00 000 1122345543 369999999
Q ss_pred CCeEEEEEccCCCeeEEecC--------------------CC----CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 517 DGKIKAWLYDTMGSRVDYDA--------------------PG----HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 517 dg~i~iwd~~~~~~~~~~~~--------------------~~----~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
+|.|++|+..+-....++.. .. .....+.|++....|.+... |..+++||++
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvr 354 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVR 354 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecc
Confidence 99999997654322211110 00 02346778888888887774 8999999998
Q ss_pred CCceee---EeccccCcceEEEEEcC-----------CCCEEEEEECCCcEEEEECCCCeeEEE-------------e--
Q 002264 573 EGTIKR---TYAGFRKKSNGVVQFDT-----------TQNHFLAVGEDSQIKFWDMDNVNILTS-------------T-- 623 (945)
Q Consensus 573 ~~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~-- 623 (945)
+-+.+. .+-.|.. .|+.+..-| -...|++++.|++|++|++..+..-.. .
T Consensus 355 D~~kvgk~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~ 433 (1080)
T KOG1408|consen 355 DVNKVGKCSSMLYHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE 433 (1080)
T ss_pred ccccccceeeeeeccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence 754332 2222322 344333222 023589999999999999976321000 0
Q ss_pred --------------------ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 624 --------------------DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 624 --------------------~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
..-+....+.+++.+|+|++||+|..-|.++++++... +....++.|.. .|.++
T Consensus 434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAHes-----EilcL 507 (1080)
T KOG1408|consen 434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAHES-----EILCL 507 (1080)
T ss_pred cCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-hhhhheecccc-----eeEEE
Confidence 00011235789999999999999999999999999866 44444554443 46677
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCC
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (945)
.++..- -..+.+++++.|.-|.++|+...... .-++.+ |
T Consensus 508 eyS~p~----------------------------------~~~kLLASasrdRlIHV~Dv~rny~l----~qtld~---H 546 (1080)
T KOG1408|consen 508 EYSFPV----------------------------------LTNKLLASASRDRLIHVYDVKRNYDL----VQTLDG---H 546 (1080)
T ss_pred eecCch----------------------------------hhhHhhhhccCCceEEEEecccccch----hhhhcc---c
Confidence 765321 12256789999999999998742221 123444 9
Q ss_pred ccceEEEEEecCC--CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC
Q 002264 764 SSKVVRLLYTNSA--VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (945)
Q Consensus 764 ~~~v~~l~~s~dg--~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~ 841 (945)
++.|+++.|...| ..+++++.|+.|.+-.... ..+|.. +-..+. .+ ....++.+++.|
T Consensus 547 SssITsvKFa~~gln~~MiscGADksimFr~~qk---~~~g~~--------f~r~t~-----t~----~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 547 SSSITSVKFACNGLNRKMISCGADKSIMFRVNQK---ASSGRL--------FPRHTQ-----TL----SKTTLYDMAVDP 606 (1080)
T ss_pred ccceeEEEEeecCCceEEEeccCchhhheehhcc---ccCcee--------cccccc-----cc----ccceEEEeeeCC
Confidence 9999999999888 7799999998776532110 001111 000000 01 346789999999
Q ss_pred CCceEEecC-CCeEEEEeccCceEEEEecC---CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcc
Q 002264 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 917 (945)
Q Consensus 842 dg~~la~~s-d~~i~iwd~~~~~~~~~~~~---h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~ 917 (945)
..+++++++ |..|+|||+.+++..+.|++ |.+....+...| .|.|||+...|+++.++|.-+|+|+.++.||...
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 999999999 88899999999999999986 666788899999 9999999999999999999999999999999999
Q ss_pred eeEEEecCCcceeeeecCCceEEEEecC
Q 002264 918 ITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 918 V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
|+.|.|++|.++|++++.||+|+||.++
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEECc
Confidence 9999999999999999999999999985
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=364.15 Aligned_cols=274 Identities=19% Similarity=0.303 Sum_probs=239.6
Q ss_pred CCCCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCccc--c-ccccc---------ccccccCcc
Q 002264 330 LDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV--S-KPFKI---------WDMAACSLP 396 (945)
Q Consensus 330 ~~~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~--~-~~~~~---------~~~~~~~~~ 396 (945)
-..+|..+++++. -...++|+.||+|+. +||.|-.|..|++|.+...+... . ..+.- -++......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 3456778888887 567999999999999 79999999999999998533111 0 00000 111122222
Q ss_pred cccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 397 ~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
.....+.||+++|..++|+|+.++|++++.|++||+|.+.+..++. .+.||..+|+++.|+|-|- +|+|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334589999999999999999999999999999999999987665 6789999999999999998 9999999999
Q ss_pred EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
.++|. ....+++.+.+|-+.|.|+.|+| ++.++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999 88899999999999999999999 5589999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
++. ++.|.+||+.+++.+..+.+|.+ .+.++.|+.+|..|++||.|++|++||+..
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 986 99999999999999999999965 899999999999999999999999999865
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=336.58 Aligned_cols=283 Identities=17% Similarity=0.268 Sum_probs=264.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC--C
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~--g 418 (945)
++.+.+|..+.||+|++ +|||||-+|.++||+..+...+ ..+.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~-------------------~~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLL-------------------QTLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCccee-------------------EEEeccccceeeEEEccCCCc
Confidence 45677999999999999 6999999999999999888655 348999999999999996 6
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v 497 (945)
..||+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876665 7889999999999999999 999999999999999 8888888889999999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.+++|++ ||.++++||.|..-+|||++++.++..+.+|..+|.++.|+|+|..+++++. |++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999987 6789999999999999999999999999999999999999999999999986 999999999999999
Q ss_pred eEeccccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
.++.+|.+ .|+.+.|+| .|.+|++++.|+++++|...+..+++.+.+|.. .|.++.+++|+.++++++.|.++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999988 899999998 688999999999999999999999999998765 89999999999999999999999999
Q ss_pred E
Q 002264 657 A 657 (945)
Q Consensus 657 ~ 657 (945)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=325.05 Aligned_cols=302 Identities=19% Similarity=0.288 Sum_probs=259.6
Q ss_pred CCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC--CcccccccccccccccCcccccccccC----CC
Q 002264 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKD----VP 406 (945)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~ 406 (945)
.|....+.+.|+.+|.+++|+|-..-+|++|+.|.+.++|++... ....+..++ +...+.+ ..
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----------h~~~~~~~s~~~n 235 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----------HCIREGGKSVPSN 235 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----------hhhhhhcccCCcc
Confidence 566677788899999999999987757999999999999998641 111100010 0000111 24
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
..|++++|+.+|..||+|+.||.+++|+..++ .+. ++..|+++|.++.|+..|. ++++++.|+++.+|| .+|.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LIS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCch-hhh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCce
Confidence 68999999999999999999999999997753 333 6888999999999999999 999999999999999 9999
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
..+.+.-|..+-..+.|-. + .-+++++.|+.|+++.+....+..++.+|.+.|.++.|+|.|..|++++. |++
T Consensus 310 ~~q~f~~~s~~~lDVdW~~--~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~T 382 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQS--N-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGT 382 (524)
T ss_pred EEEeeeeccCCccceEEec--C-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCe
Confidence 9999999998877777753 2 57999999999999999999999999999999999999999999999996 999
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCC---------CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
++||..........+..|.+ .|..+.|+|.| ..+++++.|++|++||+..+.++..+..|. .+|.+++
T Consensus 383 lkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--~pVysva 459 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVA 459 (524)
T ss_pred eEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC--CceEEEE
Confidence 99999999999999999987 78889999865 468899999999999999999999987664 4999999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCC
Q 002264 637 FSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|+|+|+++|+|+.||.|.+|+.+++
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccch
Confidence 9999999999999999999999887
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=329.36 Aligned_cols=251 Identities=22% Similarity=0.310 Sum_probs=229.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
|-+.+|..+.||.|++.||||+-+|.++||+..+...+. ++.+|.+.|.++.|+|......++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456799999999999999999999999999998875554 799999999999999984222799999999999999 5
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
+..++..+.+|...|..++|+| +|++|.+++.|.+-++||+++........+|...|.+++|.+||..++++|.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 5689999999999999999998 5689999999999999999999999999999999999999999999999997
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g 641 (945)
|..-++||+++|+.+..+.+|.+ .|..+.|+|+|..+++|+.|++++|||++..+.+..+..|.. -|..|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 88889999999999999999887 899999999999999999999999999999999888877654 899999999 88
Q ss_pred CEEEEEECCCcEEEEECCCCcccccc
Q 002264 642 NLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
.+|++++.|++++||...+. ++++.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ks 425 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKS 425 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchh
Confidence 99999999999999998766 44433
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=305.42 Aligned_cols=291 Identities=16% Similarity=0.253 Sum_probs=262.1
Q ss_pred eEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
..+++. |.+.|.++.|++|.++ ++++|.||.+.|||..+...++ .++-....|..++|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~h-------------------aipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVH-------------------AIPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEccccccee-------------------EEecCceeEEEEEEC
Confidence 345555 9999999999999995 9999999999999988876553 245577899999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCc---ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~---~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~ 491 (945)
|.|+++|+|+-|....||++.+.+ ..+....+.+|++.+.|+.|.+|++ |+|+|.|.++.+|| .+|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 999999999999999999998652 2334447889999999999999775 89999999999999 9999999999
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|++++|.|+|.-+++++. |+..++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999886 6789999999999999999999999999999999999999999999999986 999999999
Q ss_pred CCCceeeEeccccC-cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 572 SEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 572 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
+..+.+..|..... ..+++++|+..|++|++|..|.++.+||.-.++.+..+.+|.. .|.++..+|||..+++|+.|
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence 99988888874332 3588999999999999999999999999999999999987765 99999999999999999999
Q ss_pred CcEEEEE
Q 002264 651 NGFKILA 657 (945)
Q Consensus 651 g~i~iw~ 657 (945)
.+++||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=298.89 Aligned_cols=293 Identities=22% Similarity=0.305 Sum_probs=254.0
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
-+|++.|+.++..+.+..++.+++.|.++.+|++......... ..+.+.||+..|..++.++||++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCCce
Confidence 3499999999999998889999999999999998765332211 22458899999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC--CCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--~~~v~ 498 (945)
.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|.. .++||+.|++|++|+.-|.+..++..+ .+.|.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred EEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 9999999999999999997665 6889999999999999999 899999999999999777777776654 78899
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
|++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++. ++.+.+||++.++.+.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKNLY 228 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCceeE
Confidence 999999887789999999999999999999999999999999999999999999999884 9999999999999988
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC-------CCCccEEEEcCCCCEEEEEECCC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
.+.... .|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+..... .....+++|++||..|+.|..|+
T Consensus 229 sl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 229 SLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred eccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 776543 79999999986555544 455699999999988777654321 22456789999999999999999
Q ss_pred cEEEEECC
Q 002264 652 GFKILANA 659 (945)
Q Consensus 652 ~i~iw~~~ 659 (945)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=320.83 Aligned_cols=467 Identities=14% Similarity=0.217 Sum_probs=352.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
|+..|-|+.|+|.... +.++-..|.|.|||.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 7889999999999995 66677899999999999877643 333567899999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~ 500 (945)
+|+.|..|+||+..+++.++ .+.+|...|.+++.+|... +++|+|.|-+|++|| ..-.+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 7889999999999999999 899999999999999 4456789999999999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC--CEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
+|+|. |.+.+++++-|++|++|.+....+.+++.+|...|+++.+-+-| .+|++++. |..+++||..+..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 99998 55789999999999999999999999999999999999998754 58999885 8999999999999999
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
++.||.. .+..++|+|.-..+++|++||+++||+..+.+....+..... .++|++-.+.++.+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999988888876544 8999999998889999988887765 33
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
-.. ...+..++.|+.+.+..+.- . ...+.+-....-..+|+.
T Consensus 298 gre------------------eP~vsMd~~gKIiwa~~~ei-~---------~~~~ks~~~~~ev~DgEr---------- 339 (794)
T KOG0276|consen 298 GRE------------------EPAVSMDSNGKIIWAVHSEI-Q---------AVNLKSVGAQKEVTDGER---------- 339 (794)
T ss_pred cCC------------------CCceeecCCccEEEEcCcee-e---------eeeceeccCcccccCCcc----------
Confidence 222 11234445554443211100 0 000000000000011111
Q ss_pred cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCc
Q 002264 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (945)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (945)
..+.......-.-....++-+|+|+ +++++.||...||.-- -|.-
T Consensus 340 --------------L~LsvKeLgs~eiyPq~L~hsPNGr-fV~VcgdGEyiIyTal-----------------a~Rn--- 384 (794)
T KOG0276|consen 340 --------------LPLSVKELGSVEIYPQTLAHSPNGR-FVVVCGDGEYIIYTAL-----------------ALRN--- 384 (794)
T ss_pred --------------ccchhhhccccccchHHhccCCCCc-EEEEecCccEEEEEee-----------------ehhh---
Confidence 1111111001111224577889998 5555667888887410 0110
Q ss_pred ccccccccCCCcCCceeEEeecCCCceEEec-CCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceE
Q 002264 819 LLMANDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (945)
Q Consensus 819 ~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~-sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v 897 (945)
...+.-....|++|....|+- +++.|+++ ++++....++..-. +..+. +|.+|...+ ++.+
T Consensus 385 ----------K~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~---~e~i~--gg~Llg~~s-s~~~ 446 (794)
T KOG0276|consen 385 ----------KAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGIF--GGPLLGVRS-SDFL 446 (794)
T ss_pred ----------cccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc---eeeec--CCceEEEEe-CCeE
Confidence 134556778999996666666 48889988 66777777653211 33333 566666655 5679
Q ss_pred EEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCc
Q 002264 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (945)
Q Consensus 898 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 937 (945)
++||-+++++++++.-. ...+.|+.+|.+++.++.|.
T Consensus 447 ~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 447 CFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred EEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc
Confidence 99999999999998743 45789999999888887765
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=284.54 Aligned_cols=249 Identities=18% Similarity=0.230 Sum_probs=227.7
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
++++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ ++++|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 4488999999999999999999999999999999998876555 4555778999999999999 8999999999999
Q ss_pred EeCC-C------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC-CCC
Q 002264 480 WELS-G------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (945)
Q Consensus 480 wd~~-~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 551 (945)
|+.+ . +..+.+.+|.+.+.++.|.. | ..|++++.|.++.+||+++++....+.+|.+.|.++.++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9932 2 23467899999999999865 3 5799999999999999999999999999999999999999 999
Q ss_pred EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
.+++++. |...++||++.+..+++|.+|.. .|+.++|.|+|.-|++|++|++.++||++..+.+..+.......+
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 9999987 89999999999999999999988 899999999999999999999999999999999999987777778
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|++++||..|++|++|..|.++.+||.-.+
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeecccc
Confidence 999999999999999999999999998655
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=276.46 Aligned_cols=296 Identities=15% Similarity=0.234 Sum_probs=252.2
Q ss_pred ccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc--eeeEeccccC
Q 002264 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRK 585 (945)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~ 585 (945)
.-+|++++.|.+||+|...++.+..++....+.|+.+.+.||++.|++++ ...|++||++++. ++.+|.+|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999999999999999999999999999999987 7789999999865 6889999987
Q ss_pred cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccc
Q 002264 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~ 665 (945)
.|..+.|..+|+++++||+||+++|||++...+.+.+... .+|+++..+|+...|++|..+|.|++||+.+. .+.
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~ 159 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCT 159 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCC-ccc
Confidence 7999999999999999999999999999997666666543 58999999999999999999999999999765 111
Q ss_pred ccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccce
Q 002264 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (945)
Q Consensus 666 ~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (945)
..+
T Consensus 160 ~~l----------------------------------------------------------------------------- 162 (311)
T KOG0315|consen 160 HEL----------------------------------------------------------------------------- 162 (311)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 111
Q ss_pred eecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccc
Q 002264 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (945)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 825 (945)
+|+ ....|.++++.|||+.++++...|...+|++..... .+.......+
T Consensus 163 -----------iPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~ 211 (311)
T KOG0315|consen 163 -----------IPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKF 211 (311)
T ss_pred -----------CCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhhe
Confidence 111 234678889999999999999999999998754211 0000111124
Q ss_pred cCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCc-eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecc
Q 002264 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (945)
Q Consensus 826 ~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~ 903 (945)
+. |.+.+..+.+|||+++||++| |.+++||+.++. +.-.++++|...+...+||. |+.+|++|+.|+.+++|++.
T Consensus 212 ~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 212 QA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred ec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccc
Confidence 44 999999999999999999999 888999999987 67778899999999999999 99999999999999999999
Q ss_pred cceEEEEecCCCcceeEEEec
Q 002264 904 VDEVKSKLKGHQKRITGLAFS 924 (945)
Q Consensus 904 ~~~~~~~l~~h~~~V~~l~~s 924 (945)
.++.+.+..+|.....+++..
T Consensus 289 ~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 289 AGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCceeeecCCcccccEEEEee
Confidence 999999999999888888764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=303.32 Aligned_cols=342 Identities=20% Similarity=0.296 Sum_probs=275.5
Q ss_pred cCCCCCCCCCceecCCCChHHHhhhcCCCCCCcceeecCCCCc-------cccCC---CCCcceEEee--cCCCcEEEEE
Q 002264 284 KHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQ-------TWSLD---DLPRTVAVSL--HQGSTVISMD 351 (945)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~---~~~~~~~~~~--~h~~~V~~v~ 351 (945)
++.+++-+.+.++|.+.-......+.-..+....+..+...-. .|.-+ ....+.+++- +-+..|..|.
T Consensus 24 ~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~V~~v~ 103 (464)
T KOG0284|consen 24 KRLRKPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCPVNVVR 103 (464)
T ss_pred ccccchhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCCcccccccceEeccccccccceeeEE
Confidence 3444555577888888777766655444332222333322221 22211 1111222222 2456899999
Q ss_pred EeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 002264 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (945)
Q Consensus 352 fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~ 431 (945)
|.|+|++ |++|+..|.+.+|+..+-. |+ .++..|..+|.++.||++|.++++|+.+|.|+
T Consensus 104 WtPeGRR-Lltgs~SGEFtLWNg~~fn------FE-------------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 104 WTPEGRR-LLTGSQSGEFTLWNGTSFN------FE-------------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred EcCCCce-eEeecccccEEEecCceee------HH-------------HHhhhhcccceeEEEccCCCEEEEcCCCceEE
Confidence 9999997 8999999999999974321 11 34778999999999999999999999999999
Q ss_pred EEEccCCcccccceeeccc-cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCcc
Q 002264 432 LYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQ 509 (945)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 509 (945)
+|+..-. .++ .+.+| ...|.+++|+|+.. .|+|++.||+|+||| ...+.-..+.+|.-.|.++.|+|.. .
T Consensus 164 yWqpnmn-nVk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k--g 235 (464)
T KOG0284|consen 164 YWQPNMN-NVK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK--G 235 (464)
T ss_pred ecccchh-hhH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--c
Confidence 9997653 233 34444 48999999999888 899999999999999 8888888889999999999999975 6
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceE
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 589 (945)
+++++|.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.++.+++|.+ .+.
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-dv~ 310 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-DVT 310 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-hhe
Confidence 8999999999999999999999999999999999999999999999985 88999999999999999999988 899
Q ss_pred EEEEcCC-CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 590 VVQFDTT-QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 590 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
++.|+|- .+.|.+|+.||.|..|.+...+++..+. +.|...|++++|+|=|.+|++|+.|.++++|.-.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999995 4677789999999999998666666554 3456689999999999999999999999999764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=304.38 Aligned_cols=525 Identities=14% Similarity=0.162 Sum_probs=345.1
Q ss_pred EeecCCCcEEEEEEeCCCC---eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 339 VSLHQGSTVISMDFHPSHQ---TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~---~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
..-+|..+|+|+.|-|+.+ + +++|+.|+.|++|.++...... ...+.+|...+.|+.
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~-----------------i~~~~g~~~~~~cv~-- 108 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIK-----------------IYTIQGHCKECVCVV-- 108 (764)
T ss_pred eccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEE-----------------EEeecCcceeEEEEE--
Confidence 3345999999999999876 5 8999999999999998433321 133566665555543
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC--ceEEEe
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKLFNF 490 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~--~~~~~~ 490 (945)
.......+...|+.+.+|+.+..+ +.....+. ....-..|+++.++.+..+++.|+.+..|.++. ..+ +.+..+
T Consensus 109 a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el 187 (764)
T KOG1063|consen 109 ARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAEL 187 (764)
T ss_pred eeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEe
Confidence 333333334689999999995544 11111222 112223466677755555778888888888888 433 456788
Q ss_pred cCCCCCEEEEEeeecCC-ccEEEEEEcCCeEEEEEccCCC-----------------e----e---E-------EecCCC
Q 002264 491 EGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMG-----------------S----R---V-------DYDAPG 538 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-----------------~----~---~-------~~~~~~ 538 (945)
.||.+.|.+++|..... .-+|+++|.|..||+|.+.... . . . .+.+|.
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe 267 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE 267 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence 99999999999976543 4688999999999999775332 0 0 0 123688
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--ceeeEec----cccCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYA----GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 612 (945)
..|.++.|+|.+..|+++++ |.++.+|...+. --+.... ++........-|+|+++.+++-+..|..++|
T Consensus 268 DWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 89999999999999999987 899999987654 2222221 1222246778899999999999999999999
Q ss_pred ECC-CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccc
Q 002264 613 DMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 613 d~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
... ........-..+|...|.+++|+|.|.+|.+.+.|.+-|+|-.-..++....+ .....+...+.+++|-+..
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi--aRPQiHGyDl~c~~~vn~~-- 419 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI--ARPQIHGYDLTCLSFVNED-- 419 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee--cccccccccceeeehccCC--
Confidence 832 23334444445677799999999999999999999999999765222221111 1122344445666654421
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceee-ecCCCCC-------C
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV-TMPESTD-------T 763 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~-------~ 763 (945)
..+++|..+.-+|+|+... .-.+.+ .+.+... .
T Consensus 420 -----------------------------------~~FVSgAdEKVlRvF~aPk----~fv~~l~~i~g~~~~~~~~~p~ 460 (764)
T KOG1063|consen 420 -----------------------------------LQFVSGADEKVLRVFEAPK----SFVKSLMAICGKCFKGSDELPD 460 (764)
T ss_pred -----------------------------------ceeeecccceeeeeecCcH----HHHHHHHHHhCccccCchhccc
Confidence 1234555556667777642 111111 1111000 0
Q ss_pred ccceEEEEEecCCCeEEEeeecCeE-EEEeecCCCCCCCCceeeeeccccccCCCc--------ccccccccCCCcCCce
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGVQ-KLWKWHRNEQNPSGKATASAVPQHWLPSSG--------LLMANDVAGVNLEEAV 834 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~i-~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~i 834 (945)
...|..+-.|.+.-+.- ...+|.. ..|- +.. .+.....+..+... .+....+-| |...|
T Consensus 461 gA~VpaLGLSnKa~~~~-e~~~G~~~~~~~-et~--------~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG--HGyEv 528 (764)
T KOG1063|consen 461 GANVPALGLSNKAFFPG-ETNTGGEAAVCA-ETP--------LAAAPCELTEPPTEDQLQQNTLWPEVHKLYG--HGYEV 528 (764)
T ss_pred ccccccccccCCCCccc-ccccccccceee-ecc--------cccCchhccCCChHHHHHHhccchhhHHhcc--CceeE
Confidence 01111222221111000 0001110 0000 000 00000001111111 011223555 99999
Q ss_pred eEEeecCCCceEEecC-CC-----eEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce--
Q 002264 835 PCIALSKNDSYVMSAT-GG-----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-- 906 (945)
Q Consensus 835 ~~l~~s~dg~~la~~s-d~-----~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~-- 906 (945)
++++.||+|+++|++. .. .|++|+..+...+..+.+|+-.|+.++||| |+++|++.+.|+++.+|......
T Consensus 529 ~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 529 YALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred EEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccch
Confidence 9999999999999996 22 399999999999899999999999999999 99999999999999999986542
Q ss_pred --EEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 907 --VKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 907 --~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.....+.|+..|++..|+||+.+++|+|.|++|+||..
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 12347889999999999999999999999999999986
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=305.88 Aligned_cols=541 Identities=13% Similarity=0.151 Sum_probs=380.6
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccc--------------------ccccccCC
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF--------------------QASIFKDV 405 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~h 405 (945)
.|- ..|..-|..++++.+.+.+..+||.+.-..+.-... .-+--.|.... ..+.+.+|
T Consensus 36 ~VP-~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~-lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~ 113 (910)
T KOG1539|consen 36 GVP-FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKP-LPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLH 113 (910)
T ss_pred CCc-eeeeecCceEEEEEecCceEEEEeccceEEEEecCC-CCCceEEEEecCceEEEecCcEEEEEEccceEEEEeccc
Confidence 444 666666666788888899999999877655432100 00000000011 11223344
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCC-cccccceee-ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~-~~~~~~~~~-~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
...|.-+. +=|.+++++..++.+.||+..++ +.......+ ....+.|+++. +|..-...++.|+.+|.+.+|+ .
T Consensus 114 ~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvr 190 (910)
T KOG1539|consen 114 GAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVR 190 (910)
T ss_pred cceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEec
Confidence 44444332 34788999999999999999885 221111122 22223377764 3443222688899999999999 9
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
+++.++++.++...|+++.-+|.- ..++.|..+|+|.+++++..+.+.++....+.|++++|.-||..+++.+. .
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~ 265 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---S 265 (910)
T ss_pred cCcEEEEecccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---C
Confidence 999999999999999999876654 58999999999999999999999999888889999999999998887764 3
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC--Ce--eEEEeecCCCCCCccEEEEc
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VN--ILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~~~~~~~~v~~v~~s 638 (945)
.|.+.+||+...+.+......+.+.+....|.+....+++++.|+.+++|=.++ |. .++.- .+|..+..++.|.
T Consensus 266 ~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R--~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR--GGHSAPPSCIRFY 343 (910)
T ss_pred CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec--cCCCCCchheeee
Confidence 688999999999888877755544788889999999999999999988875543 42 23333 3455688999998
Q ss_pred -CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC
Q 002264 639 -KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 639 -p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
.+|..+.+++.|++++.+++....+....-..+..... .++. .+++. .....++..++.
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~-kk~~--~~~~~-----------------~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA-KKVN--VFSTE-----------------KLKLPPIVEFAF 403 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc-cccc--ccchh-----------------hhcCCcceeeec
Confidence 58999999999999999887543111000000000000 0000 00000 000111112222
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceee-ecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCC
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~ 796 (945)
....-....+.++..-.+...+.|+..+.......... .+.. ....+++++.++.|++.+.|.+.|.|-+|++..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~---~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS- 479 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK---DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS- 479 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc---cCcceEEEEEeccCceEEEeccCCeEEEEEccc-
Confidence 22222334445555556677889998764443222111 1111 346789999999999999999999999997643
Q ss_pred CCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCe
Q 002264 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 875 (945)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i 875 (945)
|...........|.++|+.++...-++.+++++ +|-+++||.....++..++ -...+
T Consensus 480 ---------------------Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~ 537 (910)
T KOG1539|consen 480 ---------------------GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSI 537 (910)
T ss_pred ---------------------CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCc
Confidence 222221111123899999999988888899888 9999999999988888877 45678
Q ss_pred eEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+++..+. ...++|.+..|-.|+++|+.+.+.++.+.||++.|++++|||||++|++++.|++||+||++
T Consensus 538 ~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 538 TGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 9999998 77799999999999999999999999999999999999999999999999999999999985
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=271.17 Aligned_cols=286 Identities=15% Similarity=0.245 Sum_probs=239.2
Q ss_pred CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 002264 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (945)
Q Consensus 356 g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~ 435 (945)
..-+||++|.|.+|++|...+|.+... +....+.|+.+...||++.||+++.. .|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 335899999999999999999998743 44567889999999999999999764 6999999
Q ss_pred cCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 436 AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 436 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
.++..- +..++.+|+..|+++.|..+|+ .++|||+||+++|||.......+...|..+|+++..+|. ..-|++|.
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpn--QteLis~d 143 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPN--QTELISGD 143 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCC--cceEEeec
Confidence 998753 4558999999999999999999 999999999999999433444455558899999999885 46799999
Q ss_pred cCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC------ceeeEeccccCcce
Q 002264 516 IDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TIKRTYAGFRKKSN 588 (945)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~------~~~~~~~~~~~~~~ 588 (945)
.+|.|++||+........+.. ....|.+++..|||.+++.+.. .|..++|++-+. +++.+++.|.. .+
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~i 218 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HI 218 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eE
Confidence 999999999988766655443 3458999999999999998874 899999998754 35667777776 67
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccc
Q 002264 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (945)
..+.+||++++|++++.|.+++||+.++. ....+...++...+..++||.||.+|++|+.|+.+++|++..+ +.++..
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy 296 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQY 296 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeec
Confidence 77889999999999999999999999988 3333444455568999999999999999999999999999998 556666
Q ss_pred cCCcc
Q 002264 669 ENPPF 673 (945)
Q Consensus 669 ~~~~~ 673 (945)
.+|..
T Consensus 297 ~gh~K 301 (311)
T KOG0315|consen 297 QGHHK 301 (311)
T ss_pred CCccc
Confidence 66554
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=304.35 Aligned_cols=527 Identities=14% Similarity=0.195 Sum_probs=384.4
Q ss_pred eeecCCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccc
Q 002264 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF 397 (945)
Q Consensus 318 v~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 397 (945)
.+|.+.+..++..............|.+.|.-+. |-|.+ ++++..++.+.||+..+++.... .
T Consensus 88 ~vy~A~g~~i~~~~rgk~i~~~~~~~~a~v~~l~--~fGe~-lia~d~~~~l~vw~~s~~~~e~~--l------------ 150 (910)
T KOG1539|consen 88 YVYVASGNKIYAYARGKHIRHTTLLHGAKVHLLL--PFGEH-LIAVDISNILFVWKTSSIQEELY--L------------ 150 (910)
T ss_pred eEEEecCcEEEEEEccceEEEEeccccceEEEEe--eecce-EEEEEccCcEEEEEecccccccc--c------------
Confidence 4455544443333332222333344766666554 45666 66677899999999887522100 0
Q ss_pred ccccccCCCccEEEEEEcCC--CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 398 QASIFKDVPISVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 398 ~~~~~~~h~~~V~~i~~s~~--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
+...++.....|+++. +|. =+.++.|+.+|.+.+||+++++.+. +++++...|+++.=+|-=. .++.|..+|
T Consensus 151 ~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~---~f~~~~s~IT~ieqsPaLD--VVaiG~~~G 224 (910)
T KOG1539|consen 151 QSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVY---TFQEFFSRITAIEQSPALD--VVAIGLENG 224 (910)
T ss_pred cceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEE---EecccccceeEeccCCcce--EEEEeccCc
Confidence 1111222233377664 453 3568889999999999999998777 7888999999999999877 899999999
Q ss_pred cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEE
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRL 553 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l 553 (945)
+|.+++ ..++.+.+|+...+.|++++|.-++. ..+++|+..|.+.+||++......... .|.+.+....|.|....+
T Consensus 225 ~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~-p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl 303 (910)
T KOG1539|consen 225 TVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN-PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVL 303 (910)
T ss_pred eEEEEEcccCcEEEEEEccccceeEEEeccCCC-eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceE
Confidence 999999 88999999996679999999976443 577888888999999999887776554 677789999999999999
Q ss_pred EEEeecCCCCceEE--EEeCCCC--ceeeEeccccCcceEEEEEc-CCCCEEEEEECCCcEEEEECCCCee----EE---
Q 002264 554 FSCGTSKDGDSFLV--EWNESEG--TIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGEDSQIKFWDMDNVNI----LT--- 621 (945)
Q Consensus 554 ~~~~~~~d~~~~i~--iwd~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~----~~--- 621 (945)
++++. |+.++ ++|...| +.++.-.||.. +..++.|. .+|..+.+++.|++++.+++..... -+
T Consensus 304 ~ta~~----DnSlk~~vfD~~dg~pR~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 304 VTAGA----DNSLKVWVFDSGDGVPRLLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred eeccC----CCceeEEEeeCCCCcchheeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 98886 45555 4564444 45555567766 67778776 6788999999999999888653211 00
Q ss_pred --------Ee-ecCCCCCCccEEEEcCC-----CCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 622 --------ST-DAEGGLPNLPRLRFSKE-----GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 622 --------~~-~~~~~~~~v~~v~~sp~-----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
.. ...-...+|..+++... .+.+++.-.+...+.|+..+...-...+...........+.+++.++
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 00 00011235666666542 34566666677899999976522123333332222334466777776
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
-|++. +.|.+.|.|.+|++.++.....+- ....|...|
T Consensus 459 CGNF~-------------------------------------~IG~S~G~Id~fNmQSGi~r~sf~-----~~~ah~~~V 496 (910)
T KOG1539|consen 459 CGNFV-------------------------------------FIGYSKGTIDRFNMQSGIHRKSFG-----DSPAHKGEV 496 (910)
T ss_pred cCceE-------------------------------------EEeccCCeEEEEEcccCeeecccc-----cCccccCce
Confidence 66654 677778999999998654443331 223499999
Q ss_pred EEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEE
Q 002264 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la 847 (945)
++++...-++.+++++.+|.+++|++.... +... +. -...++++..+.....+|
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----------------------l~~~-l~---l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKV----------------------LKKS-LR---LGSSITGIVYHRVSDLLA 550 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcc----------------------eeee-ec---cCCCcceeeeeehhhhhh
Confidence 999999999999999999999999864321 1110 11 345678888888888899
Q ss_pred ecCC-CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCC
Q 002264 848 SATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (945)
Q Consensus 848 ~~sd-~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d 926 (945)
.+.| -.|+++|+.+.+.++.+.||.+.|++++||| ||++|++++.|++|++||+.++.++..+. -..+.+++.|||+
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPn 628 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPN 628 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCC
Confidence 8884 5699999999999999999999999999999 99999999999999999999999998876 5678999999999
Q ss_pred cceeeeecCC-ceEEEEe
Q 002264 927 LNILVSSGAD-AQVTLCV 943 (945)
Q Consensus 927 g~~l~s~~~D-g~i~vWd 943 (945)
|.+|||+..| .-|++|.
T Consensus 629 gD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCEEEEEEecCceEEEEE
Confidence 9999999888 5689994
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=288.46 Aligned_cols=291 Identities=20% Similarity=0.329 Sum_probs=265.6
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..+..+.+|...|+.+-|+|+-. ++++++.|++|++||..+|+... .+.||.+.|..|+|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEE
Confidence 44566677999999999999987 79999999999999999998763 38899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
+..|++||+++.|-.+++||.++- .++.+.+.+|...|.++.|-|.|. +++|++.|.+|+.|+ .+|.++.++.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999998763 344447789999999999999998 899999999999999 999999999999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC---------------CCEEEEEee
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD---------------GSRLFSCGT 558 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~ 558 (945)
...|..+.. ..||.++++++.|.++++|-+.+.++...+..|..+|.+++|.|. +.++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999999886 458899999999999999999999999999999999999999764 246666664
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|+.|++||+.++.++.++.+|.+ .|..++|+|.|++|+++.+|+++++||+.++++...+..|.+ -|+++.|+
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh 385 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFH 385 (406)
T ss_pred ----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecC
Confidence 99999999999999999999988 899999999999999999999999999999999999998877 79999999
Q ss_pred CCCCEEEEEECCCcEEEEEC
Q 002264 639 KEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~ 658 (945)
.+..++++|+-|.++++|..
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999975
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=280.02 Aligned_cols=338 Identities=17% Similarity=0.250 Sum_probs=287.3
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
++..|+..|.+++.+|+.+ +++||+.|....+|+ .+|.....+.+|+..|+++.|+. +|.+|++|+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 6778999999999999777 899999999999999 88999999999999999999977 679999999999999999
Q ss_pred ccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
..++.....+......+.-+.|+|.+..|++++. ||.+.+|.+.++...+.+.+|.. .+++-.|.|+|+.++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988877788999999999999998885 99999999999989999999877 888899999999999999
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeee
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 684 (945)
.||+|++|+..+++++..+....+ ....++.++..+..++.|+.++.+.+-+..+++ .+....
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n--------------- 272 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNN--------------- 272 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEecC---------------
Confidence 999999999999999988875443 367889999999999999999988887766551 110000
Q ss_pred ecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCc
Q 002264 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTS 764 (945)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 764 (945)
+.+..+ .+. +.
T Consensus 273 --~~~~~l----------------------------------------------------------------~~~---~e 283 (399)
T KOG0296|consen 273 --GTVPEL----------------------------------------------------------------KPS---QE 283 (399)
T ss_pred --CCCccc----------------------------------------------------------------ccc---ch
Confidence 000000 000 00
Q ss_pred cceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 765 ~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
. ....|.++.+|..-.
T Consensus 284 ~----------------------------------------------------------------~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 284 E----------------------------------------------------------------LDESVESIPSSSKLP 299 (399)
T ss_pred h----------------------------------------------------------------hhhhhhhcccccccc
Confidence 0 122344555566667
Q ss_pred eEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEe
Q 002264 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (945)
Q Consensus 845 ~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 923 (945)
+.|+|+ ||+|.|||+...++.+.+. |..+|+.+.|-+ ..+|++++.||.|+.||.++|+++..+.||...|.+++.
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence 889999 9999999999887766665 888999999997 458899999999999999999999999999999999999
Q ss_pred cCCcceeeeecCCceEEEEecC
Q 002264 924 STSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 924 s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+|+.++++|+|.|++.+|++.+
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=291.97 Aligned_cols=335 Identities=16% Similarity=0.296 Sum_probs=271.6
Q ss_pred CCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCC--cc-----cccceeecc----ccccEEEEEEecCCCeeEEEEE
Q 002264 404 DVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGS--ND-----LRQHSQIDA----HVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~--~~-----~~~~~~~~~----h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
.|+.+|.+.+|+|-.. .+++|+.|-..++|++... .. ++....+.+ .+..|++++|+.+|. .|++|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLATG 253 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEEEe
Confidence 3999999999999766 9999999999999998741 11 111111111 235799999999999 99999
Q ss_pred eCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC
Q 002264 472 GDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 472 s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 551 (945)
+.||.+++|+..|..+.++..|.++|.++.|+. .|.+|++++.|+++.+||..++.....+..+..+-..+.|-.+.
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~- 330 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND- 330 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-
Confidence 999999999999999999999999999999965 66899999999999999999999999998888876778886554
Q ss_pred EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
.+++++. ++.|+++.+....++.++.+|++ .|.++.|.|.+..|++++.|++++||++........+..|.. .
T Consensus 331 ~F~ts~t----d~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk--e 403 (524)
T KOG0273|consen 331 EFATSST----DGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK--E 403 (524)
T ss_pred eEeecCC----CceEEEEEecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc--c
Confidence 4555554 99999999999999999999887 899999999999999999999999999998888888877654 8
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (945)
|..+.|+|+|... |+..
T Consensus 404 i~t~~wsp~g~v~-----------~n~~---------------------------------------------------- 420 (524)
T KOG0273|consen 404 IYTIKWSPTGPVT-----------SNPN---------------------------------------------------- 420 (524)
T ss_pred eeeEeecCCCCcc-----------CCCc----------------------------------------------------
Confidence 9999999976410 0000
Q ss_pred CCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEE
Q 002264 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (945)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw 791 (945)
++..+++++.|+++++|
T Consensus 421 ---------------------------------------------------------------~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 421 ---------------------------------------------------------------MNLMLASASFDSTVKLW 437 (524)
T ss_pred ---------------------------------------------------------------CCceEEEeecCCeEEEE
Confidence 01124444445555555
Q ss_pred eecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecC
Q 002264 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 870 (945)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~ 870 (945)
|+.. |.++.. +.. |..+|++++|||+|+++|+|+ ||.|.+|++++++.++.+.+
T Consensus 438 dv~~----------------------gv~i~~-f~k--H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 438 DVES----------------------GVPIHT-LMK--HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred EccC----------------------CceeEe-ecc--CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence 4321 111111 222 899999999999999999999 99999999999999999985
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEecc
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~ 903 (945)
.+.|..|+|+. +|..|..+..|+.+++-|++
T Consensus 493 -~~~Ifel~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 -TGGIFELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -CCeEEEEEEcC-CCCEEEEEecCCCceEEEec
Confidence 56699999999 88999999999999999875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=268.88 Aligned_cols=248 Identities=18% Similarity=0.258 Sum_probs=215.7
Q ss_pred ccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcc--cccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
..+.+|++.|+.++..+. ...+++++.|.++.+|++..... -...+.+.||...|..++.++||+ ++++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccce
Confidence 468899999999999996 67889999999999999865321 122347889999999999999999 8999999999
Q ss_pred EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CCeEEEEEEcCC--CC
Q 002264 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSAD--GS 551 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~--~~ 551 (945)
+++|| .+|+..+.|.+|...|.+++|++ |.+.+++|+.|.+|++|+... .+..++... ...|+++.|+|+ ..
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999 88899999999999999999987 458999999999999999765 444444333 679999999998 67
Q ss_pred EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
.|++++. |+.+++||+++.+....+.+|.. .++.+.++|||..+++|+.||.+.+||++.++.+..+.. ...
T Consensus 164 ~Ivs~s~----DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~ 235 (315)
T KOG0279|consen 164 IIVSASW----DKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDI 235 (315)
T ss_pred EEEEccC----CceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCe
Confidence 8888886 99999999999999999999987 899999999999999999999999999999999887754 348
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|.+++|+|+.-+|+.+.. ..|+|||+.++
T Consensus 236 v~sl~fspnrywL~~at~-~sIkIwdl~~~ 264 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATA-TSIKIWDLESK 264 (315)
T ss_pred EeeEEecCCceeEeeccC-CceEEEeccch
Confidence 999999999877776654 46999999877
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=279.56 Aligned_cols=290 Identities=18% Similarity=0.280 Sum_probs=258.9
Q ss_pred eEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
..+.+ +|.+.|.|+++.|... ++++|+.|++|+|||+.+|+... .+.||-..|..+++|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~vavS 202 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGVAVS 202 (460)
T ss_pred ehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhheeeeeeec
Confidence 34444 4999999999999987 69999999999999999998764 388999999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~ 494 (945)
+--.||++++.|+.|+.||++..+.++ .+.||-+.|.|++..|.-. .++||+.|.+++||| .+...+..+.||.
T Consensus 203 ~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 203 KRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred ccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCC
Confidence 999999999999999999999998887 7889999999999999988 899999999999999 8888999999999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.+|.++.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++.+|....+++++ ...|+.|++..|
T Consensus 278 ~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p~g 350 (460)
T KOG0285|consen 278 NPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLPEG 350 (460)
T ss_pred CcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCCcc
Confidence 999999987753 4699999999999999999999999999999999999999999999987 457999999999
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec---CC---CCCCccEEEEcCCCCEEEEEE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA---EG---GLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~---~~~~v~~v~~sp~g~~l~~~~ 648 (945)
..+..+.+|.. .+..++...|+ ++++|+++|.+.+||.++|...+.... ++ ....|.+.+|...|..|++|.
T Consensus 351 ~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 351 EFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred chhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 99999988887 88889888765 889999999999999999876554422 11 123588999999999999999
Q ss_pred CCCcEEEEECCC
Q 002264 649 ADNGFKILANAI 660 (945)
Q Consensus 649 ~dg~i~iw~~~~ 660 (945)
.|.+|++|.-..
T Consensus 429 adKtIk~~keDe 440 (460)
T KOG0285|consen 429 ADKTIKMYKEDE 440 (460)
T ss_pred CCcceEEEeccc
Confidence 999999997653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=299.83 Aligned_cols=492 Identities=16% Similarity=0.237 Sum_probs=350.2
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+...+..|..++|+|...+++++-..|.|++||..-+..+. .+..|.++|..++|+|++. +|+|||.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 45567889999999999999999999999999999988777 6788999999999999999 999999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+.+++.++.||-+.|..+.|++.- .+|+++|.|.+|+||+..+.+++..+.+|.+.|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 8899999999999999999999854 79999999999999999999999999999999999999999999999997
Q ss_pred CCCceEEEEeCCCCc-----------------------------eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEE
Q 002264 561 DGDSFLVEWNESEGT-----------------------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 561 d~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 611 (945)
|.+|++||+..-+ ....+.||.. .|+-++|+|.-..+++|+.|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 8999999985211 1234567766 7888999999999999999999999
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccc
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
|.++..+.-..-...+|.+.|.++-|+|....+++.+.|++|++||+... ..++++..... ....++..|..++
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrend-----RFW~laahP~lNL 306 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRREND-----RFWILAAHPELNL 306 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCC-----eEEEEEecCCcce
Confidence 99987665544445566779999999999999999999999999999766 45555543332 4678999999999
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEE
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 771 (945)
+++|-.++...+...... ..+...++.++-.- |..|+.+|+....... ...+......-.++.++.
T Consensus 307 fAAgHDsGm~VFkleREr----------pa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~---v~~lr~~g~~~~~~~sms 372 (1202)
T KOG0292|consen 307 FAAGHDSGMIVFKLERER----------PAYAVNGNGLFYVK-DRFIRSYDLRTQKDTA---VASLRRPGTLWQPPRSLS 372 (1202)
T ss_pred eeeecCCceEEEEEcccC----------ceEEEcCCEEEEEc-cceEEeeeccccccce---eEeccCCCcccCCcceee
Confidence 988877665544322111 11222233333333 6778888877532222 222222111346778899
Q ss_pred EecCCCeEEEee--ecCeEEEEeecCCCC-CCC--------C---ceeeeeccccccCCCcccccccccC-----CCcCC
Q 002264 772 YTNSAVGLLALG--SNGVQKLWKWHRNEQ-NPS--------G---KATASAVPQHWLPSSGLLMANDVAG-----VNLEE 832 (945)
Q Consensus 772 ~s~dg~~l~~~~--~dg~i~lw~~~~~~~-~~~--------~---~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~ 832 (945)
++|....+..++ .+|...++.++.... ..+ | -..+...-.+++..+.......+.. .....
T Consensus 373 YNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~ 452 (1202)
T KOG0292|consen 373 YNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPE 452 (1202)
T ss_pred eccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcc
Confidence 999877665554 357777887765421 111 0 0111111122222211111100100 00011
Q ss_pred ceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEec
Q 002264 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (945)
Q Consensus 833 ~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~ 912 (945)
.+..+-+.-+|.+| ..+...|.+||++..+.+..++ ...|.-+.||+ |...+|--+ ..+|.|.+.. -+.+.++.
T Consensus 453 ~~~~IF~ag~g~ll-l~~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~-dm~~vAll~-Kh~i~i~~kk-L~l~~sih 526 (1202)
T KOG0292|consen 453 STDDIFYAGTGNLL-LRSPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSN-DMSRVALLS-KHTITIADKK-LELLCSIH 526 (1202)
T ss_pred cccceeeccCccEE-EEcCCeEEEEEeecceEEEEEe--cCceeEEEEcC-ccchhhhcc-cceEEEEecc-hhheecch
Confidence 22233344444333 3345679999998877777775 56789999999 777776555 4568888743 33344333
Q ss_pred CCCcceeEEEecCCcceeee
Q 002264 913 GHQKRITGLAFSTSLNILVS 932 (945)
Q Consensus 913 ~h~~~V~~l~~s~dg~~l~s 932 (945)
.+-+|.+-+|..+|-++.|
T Consensus 527 -Etiriksgawde~gVfiYt 545 (1202)
T KOG0292|consen 527 -ETIRIKSGAWDEDGVFIYT 545 (1202)
T ss_pred -heeEeeeceeccCceEEEE
Confidence 2345666667666654444
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=270.39 Aligned_cols=287 Identities=17% Similarity=0.219 Sum_probs=247.4
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
+...+|+++|..+.|+|+|. ++|||+.|..|.+|++.....- .-.+++|+++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccC
Confidence 45567999999999999999 5999999999999997543321 1347799999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
++.|++++.|.+|+.||+++|++.+ .+++|..-|.++.-+.-|.. ++.|++.|+++++|| .+...++++. ..-.
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999999887 67789999999997666765 788999999999999 6666666654 4567
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-- 574 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-- 574 (945)
+++++|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++++.+. +.++++||++-.
T Consensus 177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 88888865 4567999999999999999999999999999999999999999999999987 999999998753
Q ss_pred --ceeeEeccccCc---ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC
Q 002264 575 --TIKRTYAGFRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 575 --~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
+++..+.++... ..-.++|+|++..+-+|+.|..+++||..+...+..+++|. +.|++++|+|...+|.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence 456777766431 24457899999999999999999999999888888887665 48999999999999999999
Q ss_pred CCcEEEE
Q 002264 650 DNGFKIL 656 (945)
Q Consensus 650 dg~i~iw 656 (945)
|.+|.+=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9998863
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=272.36 Aligned_cols=328 Identities=15% Similarity=0.196 Sum_probs=272.8
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
|..|+..|.+++.+|+.+++|||+.|..-.+|++.+|+.+. .+.+|+..|+++.|+.+|. +|+||+.+|.|+||.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 77899999999999999999999999999999999998555 7889999999999999999 999999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.++.....+...-..+.-+.|+|. +.+|++|+.||.+-+|.+........+.+|..++++=.|.|+|++++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 888888887766677888999994 489999999999999999998888889999999999999999999999986
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC--------C-CCCC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--------G-GLPN 631 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~-~~~~ 631 (945)
+++|++|++.++.++..+.+.......++.++..+..++.|+.++.+++-+..+|+.+...... . ....
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 9999999999999999888666666788999999999999999999999999888887766531 0 0112
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (945)
|.++.++..-.+.|+|+-||+|.|||+....
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~------------------------------------------------- 319 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAST------------------------------------------------- 319 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccch-------------------------------------------------
Confidence 2233333344445555555555555543220
Q ss_pred CCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEE
Q 002264 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (945)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw 791 (945)
++.
T Consensus 320 ----------------------------------------~R~------------------------------------- 322 (399)
T KOG0296|consen 320 ----------------------------------------LRH------------------------------------- 322 (399)
T ss_pred ----------------------------------------hhe-------------------------------------
Confidence 000
Q ss_pred eecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecC
Q 002264 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 870 (945)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~ 870 (945)
... |...|+.+.|-+ ..+|++++ +|+|+.||.++|+++.++.|
T Consensus 323 ---------------------------------~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 323 ---------------------------------ICE--HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred ---------------------------------ecc--CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 000 666788888877 45666666 99999999999999999999
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEecc
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~ 903 (945)
|...|.+++++| +.+++++++.|++.+|+++.
T Consensus 367 H~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999 89999999999999999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=261.60 Aligned_cols=288 Identities=19% Similarity=0.322 Sum_probs=234.9
Q ss_pred EeecCCCcEEEEEEeCC-CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 339 VSLHQGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~-g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.+-+|.+.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.+++|+|.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence 34459999999999999 76 899999999999999875332210 11234579999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC---ceEEEecCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGH 493 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---~~~~~~~~~ 493 (945)
|++||+|+.|.++.||.-..+ ......++.||...|.+++|+++|. +|++++.|+.|-||. ..+ .+...+..|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 999999999999999986644 4455668999999999999999999 999999999999999 433 467889999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC---CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
...|..+.|+|.. .+|++++.|.+|++|+-... ....++.++...|.+++|++.|..|++++. |+.++||-
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~ 223 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWR 223 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeee
Confidence 9999999999976 59999999999999976532 356788888889999999999999999985 99999998
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe------eEEEeecCCCCCCccEEEEcCC-CCE
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------ILTSTDAEGGLPNLPRLRFSKE-GNL 643 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~sp~-g~~ 643 (945)
..+ .+.+.+...+..+.|. ...|++++.|+.|++|.-...- .+.. ..+.|...|++++|+|. .+.
T Consensus 224 ~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 224 LYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred ecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCc
Confidence 652 2333344467888888 5689999999999999866431 1111 11234448999999994 789
Q ss_pred EEEEECCCcEEEEECC
Q 002264 644 LAVTTADNGFKILANA 659 (945)
Q Consensus 644 l~~~~~dg~i~iw~~~ 659 (945)
|++|++||.|++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=286.31 Aligned_cols=437 Identities=15% Similarity=0.209 Sum_probs=316.7
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 55589999999999999999999999999999999987777 5656778999999998888 899999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcC-CCCEEEEEee
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 558 (945)
.+++.++.|..|.+.|.+++.+|.. .++++++.|-+|++||.+.. .+...+.+|.+.|.+++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999965 69999999999999999875 45678999999999999999 6678899886
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC--CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
|++|++|.+.+..+..++.+|.. .|+++.+-+.| .++++|+.|..|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999988 79999987644 7999999999999999999999999998866 899999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCccc
Q 002264 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (945)
|+|.-.++++|+.||+++||+..+- +...++.- --..+.+++-.+.+..++.|+..+...+....
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~-----gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgr--------- 299 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY-----GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGR--------- 299 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc-----CCceEEEEeecCCCCeEEEeccCCcEEEEccC---------
Confidence 9999999999999999999998775 33333321 11246777766666666544443322211111
Q ss_pred CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeec-CeEEEEeecC
Q 002264 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWHR 795 (945)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d-g~i~lw~~~~ 795 (945)
....+..++.|+.+-+...+ ..+.+-.+..
T Consensus 300 -------------------------------------------------eeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~ 330 (794)
T KOG0276|consen 300 -------------------------------------------------EEPAVSMDSNGKIIWAVHSEIQAVNLKSVGA 330 (794)
T ss_pred -------------------------------------------------CCCceeecCCccEEEEcCceeeeeeceeccC
Confidence 11122223333322221111 0000000000
Q ss_pred CCCCCCCceeeeeccccccCCCcccccccccCC-CcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCC
Q 002264 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGV-NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (945)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~ 874 (945)
. .+...|+.+....... .-.-....++-||+|+++++++||.-.||..--.+ - .+-+.
T Consensus 331 ~----------------~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R----n-K~fG~ 389 (794)
T KOG0276|consen 331 Q----------------KEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR----N-KAFGS 389 (794)
T ss_pred c----------------ccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh----h-ccccc
Confidence 0 0222333222111100 01223456888999999999999998888632111 1 13445
Q ss_pred eeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 875 i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
-....|++ |..-.|+-..++.|.++ ++.+....+...-. ..+--.|.+|...+ ++.+++|||+
T Consensus 390 ~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~ 452 (794)
T KOG0276|consen 390 GLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWE 452 (794)
T ss_pred ceeEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcc
Confidence 67788998 76777778788999998 66666655542211 12222344444444 4457888863
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=295.19 Aligned_cols=282 Identities=21% Similarity=0.311 Sum_probs=245.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
.+..|-.++|+|.... +.++-..|.|.+||.+-+..+.. |.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 3568999999999995 77888899999999998888743 889999999999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~ 501 (945)
+|+.|-.|+||+.++.+++. ++.||-..|..+.|++.-. +++|+|.|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987766 7889999999999999888 899999999999999 99999999999999999999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCC-----------------------------eeEEecCCCCeEEEEEEcCCCCE
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYSADGSR 552 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~~~~s~~~~~ 552 (945)
|+|.. ..++++|-|.+||+||+..-. ....+.+|...|+-++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99976 589999999999999985210 12245678889999999999999
Q ss_pred EEEEeecCCCCceEEEEeCCCCc--eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+++++. |..|++|.+..-+ .+.+..+|.+ .|.++-|+|..+.+++.|+|+.|+|||+.....++++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999986 8899999987544 4556788887 899999999999999999999999999999999999876544
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
..+.++.+|..+++|.|-+ +.+.+|.++
T Consensus 294 RFW~laahP~lNLfAAgHD-sGm~VFkle 321 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHD-SGMIVFKLE 321 (1202)
T ss_pred eEEEEEecCCcceeeeecC-CceEEEEEc
Confidence 7899999999998887654 445555554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=273.57 Aligned_cols=497 Identities=16% Similarity=0.208 Sum_probs=353.6
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcC--------cEEEEEcCCCCcccccccccccccccCcccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--------EITLWELAMRDRLVSKPFKIWDMAACSLPFQ 398 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (945)
+++.+. ....+.++|+..|.|++.+||.- .+++|-..| .|+|||..+-..+
T Consensus 89 l~n~ee--~~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL------------------ 147 (626)
T KOG2106|consen 89 LYNWEE--RSQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTL------------------ 147 (626)
T ss_pred EEeehh--hhcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceee------------------
Confidence 444432 34566788999999999999986 477775444 5899997665544
Q ss_pred cccccCCCccEEEEEEcC--CCCEEEEE--ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 399 ASIFKDVPISVSRVAWSP--DGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 399 ~~~~~~h~~~V~~i~~s~--~g~~las~--~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
.++..-...|.|++||+ .|.+|+.- +.+..+.+||...+.... ....-+..|....|.|.+.. ++++++ .
T Consensus 148 -~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~---~vk~sne~v~~a~FHPtd~n-liit~G-k 221 (626)
T KOG2106|consen 148 -HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG---PVKTSNEVVFLATFHPTDPN-LIITCG-K 221 (626)
T ss_pred -eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC---cceeccceEEEEEeccCCCc-EEEEeC-C
Confidence 23445667899999999 35566554 345668999998876655 34456778999999999886 666666 7
Q ss_pred CcEEEEe-CCCceEE---EecCC-CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 475 KLIKVWE-LSGRKLF---NFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~---~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
+.+.+|+ ..+.... .|..+ ...|.|++|.++++ +++|..+|.|.||+..+.........|.+.|.+++.-.+
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~ 298 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD 298 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC
Confidence 8999999 5554432 23333 35699999977543 889999999999998777666666689999999999999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
|..|- ++ +|..|..|| ..-+.++..+-.. .+.++.++- .+.-|++|...+.|..=.++++-.+..+ +|+
T Consensus 299 GtllS-Gg----KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e--~~~di~vGTtrN~iL~Gt~~~~f~~~v~-gh~- 368 (626)
T KOG2106|consen 299 GTLLS-GG----KDRKIILWD-DNYRKLRETELPEQFGPIRTVAE--GKGDILVGTTRNFILQGTLENGFTLTVQ-GHG- 368 (626)
T ss_pred ccEee-cC----ccceEEecc-ccccccccccCchhcCCeeEEec--CCCcEEEeeccceEEEeeecCCceEEEE-ecc-
Confidence 98665 66 499999999 3333333332221 124555543 3333888888888777677666544443 333
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (945)
.....++.+|+...+++++.|+.+++|+ .. ++.-. .....+..++.|.|.| .++
T Consensus 369 -delwgla~hps~~q~~T~gqdk~v~lW~-~~--k~~wt------~~~~d~~~~~~fhpsg-~va--------------- 422 (626)
T KOG2106|consen 369 -DELWGLATHPSKNQLLTCGQDKHVRLWN-DH--KLEWT------KIIEDPAECADFHPSG-VVA--------------- 422 (626)
T ss_pred -cceeeEEcCCChhheeeccCcceEEEcc-CC--ceeEE------EEecCceeEeeccCcc-eEE---------------
Confidence 3789999999999999999999999999 22 22211 1123467788999888 553
Q ss_pred CCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeE
Q 002264 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (945)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i 788 (945)
.|...|...+.|... .... ++.. ....+.+++|+|+|.+|+.++.|+.|
T Consensus 423 ----------------------~Gt~~G~w~V~d~e~----~~lv--~~~~---d~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 423 ----------------------VGTATGRWFVLDTET----QDLV--TIHT---DNEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred ----------------------EeeccceEEEEeccc----ceeE--EEEe---cCCceEEEEEcCCCCEEEEecCCCeE
Confidence 444445555566543 1111 1111 35789999999999999999999999
Q ss_pred EEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEE-
Q 002264 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMT- 866 (945)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~- 866 (945)
.+|.+..+.+. +.. .+..+..+|+.+.||+|++++.+-+ |-.|..|.....+...
T Consensus 472 yiy~Vs~~g~~---------------------y~r--~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 472 YIYRVSANGRK---------------------YSR--VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred EEEEECCCCcE---------------------EEE--eeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence 99987543321 111 0111457899999999999999999 7779999433211111
Q ss_pred -------------Ee----cCCCCCeeEEEeecCCCceEEEeecCceEEEEecccc---eEEEEecCCCcceeEEEecCC
Q 002264 867 -------------TF----MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKGHQKRITGLAFSTS 926 (945)
Q Consensus 867 -------------~~----~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~V~~l~~s~d 926 (945)
-| ..+...|..++-+. ..+++|+|.+.|.|++|...-. ..-..+.+|++.|++++|+.+
T Consensus 529 ~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~ 607 (626)
T KOG2106|consen 529 VKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK 607 (626)
T ss_pred ecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeC
Confidence 11 12444577777887 8899999999999999987632 234567889999999999999
Q ss_pred cceeeeecCCceEEEEec
Q 002264 927 LNILVSSGADAQVTLCVE 944 (945)
Q Consensus 927 g~~l~s~~~Dg~i~vWdl 944 (945)
..+|++.+.|.+|..|++
T Consensus 608 d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 608 DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CceEEecCCCceEEEEEe
Confidence 999999999999999986
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=289.04 Aligned_cols=478 Identities=12% Similarity=0.135 Sum_probs=332.1
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeC-cCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
+|++.. ++.+.....|+-.|+|++|+|.++|++-+|+. |-.|.+||++........ .-
T Consensus 106 Vw~la~-h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn--------------------ki 164 (1080)
T KOG1408|consen 106 VWSLAF-HGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN--------------------KI 164 (1080)
T ss_pred eeeecc-ccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc--------------------cc
Confidence 787765 23444455699999999999999985556654 567889998765544321 13
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeec----------------------------------cc-
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID----------------------------------AH- 450 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~----------------------------------~h- 450 (945)
...|..++|+.||.|+++++. ..|++|.++.++.++....+. ||
T Consensus 165 ss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhL 243 (1080)
T KOG1408|consen 165 SSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHL 243 (1080)
T ss_pred ceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccce
Confidence 467999999999999999864 679999998765321110000 00
Q ss_pred ----------------cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC---------------C-----
Q 002264 451 ----------------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG---------------H----- 493 (945)
Q Consensus 451 ----------------~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~---------------~----- 493 (945)
+....|++.+ .. +++.|+.+|.|++|+ .+-..+.++.. |
T Consensus 244 vEFSsRRLLDKWVqcRTTnAnCIcVs--~r--~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~ 319 (1080)
T KOG1408|consen 244 VEFSSRRLLDKWVQCRTTNANCICVS--SR--LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSES 319 (1080)
T ss_pred eeechhhhhhhhhhhhccccceeeee--cc--eEEEeeccceeeecCcchhhhccccccccccccchhhccccccccccc
Confidence 0011223333 33 789999999999998 54333322210 0
Q ss_pred --CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---EEecCCCCeEEEEEEcCC-----------CCEEEEEe
Q 002264 494 --EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSAD-----------GSRLFSCG 557 (945)
Q Consensus 494 --~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~-----------~~~l~~~~ 557 (945)
....-+|+..+++....|.....|..+++||++....+ ..+..|...|..+..-|- ...+++|+
T Consensus 320 ~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS 399 (1080)
T KOG1408|consen 320 SPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS 399 (1080)
T ss_pred CcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec
Confidence 00112333333444578889999999999999875543 344456666665544331 12367777
Q ss_pred ecCCCCceEEEEeCCCCceeeEec------------------------------------cccCcceEEEEEcCCCCEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYA------------------------------------GFRKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~l~ 601 (945)
. |++|++||+..+..-..+. ......+.+++++|+|++|+
T Consensus 400 s----D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA 475 (1080)
T KOG1408|consen 400 S----DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA 475 (1080)
T ss_pred C----CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec
Confidence 5 9999999987521110000 00112478899999999999
Q ss_pred EEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC---CCCEEEEEECCCcEEEEECCCCccccccccCCccccccC
Q 002264 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (945)
+|..-|+++||++..-+....++.|.. .|.|+.|+. ..++||+++.|..|.++|+.....+++++.+|..
T Consensus 476 sGDr~GnlrVy~Lq~l~~~~~~eAHes--EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs----- 548 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQELEYTCFMEAHES--EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS----- 548 (1080)
T ss_pred ccCccCceEEEEehhhhhhhheecccc--eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc-----
Confidence 999999999999999888888887765 899999986 4578999999999999999888777888877655
Q ss_pred cceeeeecccc--cceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeee
Q 002264 679 PIESVALKVSA--SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (945)
Q Consensus 679 ~i~~v~~s~~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 756 (945)
.|+++.|...| ..+ ++++.|..|.+--.........+...+
T Consensus 549 sITsvKFa~~gln~~M-------------------------------------iscGADksimFr~~qk~~~g~~f~r~t 591 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKM-------------------------------------ISCGADKSIMFRVNQKASSGRLFPRHT 591 (1080)
T ss_pred ceeEEEEeecCCceEE-------------------------------------EeccCchhhheehhccccCceeccccc
Confidence 58889887766 333 344444444322211100011111000
Q ss_pred cCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeE
Q 002264 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (945)
Q Consensus 757 ~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 836 (945)
- ......+..+++.|..+++++++.|..|+||+++... ..+..-....|.+..-.
T Consensus 592 ~---t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK----------------------q~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 592 Q---TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK----------------------QVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred c---ccccceEEEeeeCCCcceEEEEecccceEEEeccccc----------------------eeeeecccccCCCceEE
Confidence 0 0134568899999999999999999999999875433 22111111236677788
Q ss_pred EeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 837 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 837 l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
+...|.|-|+|+.. |.++.++|..+++++.++.||...|+.+.|++ |-+.|++.+.||.|.||.+..
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc-cchhheeecCCceEEEEECch
Confidence 89999999999987 88899999999999999999999999999999 899999999999999999863
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=288.08 Aligned_cols=571 Identities=16% Similarity=0.218 Sum_probs=368.4
Q ss_pred eecCCCCc---cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCc
Q 002264 319 TYSSSRHQ---TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (945)
Q Consensus 319 ~~~~~~~~---~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (945)
..+++.++ +|.+....-.....+++ ..+.|++++..-. ...+...|+++.+||.+..+......++
T Consensus 72 ~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~-~~~~~~ad~~v~vw~~~~~e~~~~~~~r--------- 140 (764)
T KOG1063|consen 72 MVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSS-VMTCKAADGTVSVWDKQQDEVFLLAVLR--------- 140 (764)
T ss_pred EEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeee-EEEeeccCceEEEeecCCCceeeehhee---------
Confidence 34444444 89888555556666665 4556666665443 2333367999999998555422111111
Q ss_pred ccccccccCCCccEEEEEEcC-CCCE-EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCC-eeEEEEEe
Q 002264 396 PFQASIFKDVPISVSRVAWSP-DGNY-VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCG 472 (945)
Q Consensus 396 ~~~~~~~~~h~~~V~~i~~s~-~g~~-las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~~~l~s~s 472 (945)
+.-...--.|+++.| .+.+ +|.|+.+..|.++.-..+ ..+....+.||.+.|.+++|...+. .++++|+|
T Consensus 141 ------f~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S 213 (764)
T KOG1063|consen 141 ------FEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-SFARVAELEGHTDWIRSLAFARLGGDDLLLASSS 213 (764)
T ss_pred ------hhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-ceeEEEEeeccchhhhhhhhhccCCCcEEEEecC
Confidence 111122334666666 3443 566777778888876643 4455568999999999999998765 66999999
Q ss_pred CCCcEEEEe--CCC--------------------ceEEE----------ecCCCCCEEEEEeeecCCccEEEEEEcCCeE
Q 002264 473 DDKLIKVWE--LSG--------------------RKLFN----------FEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 473 ~d~~i~vwd--~~~--------------------~~~~~----------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
.|..||+|. ..+ ..+.. +.||.+.|+++.|+| .+..|++++.|.++
T Consensus 214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksm 291 (764)
T KOG1063|consen 214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSM 291 (764)
T ss_pred CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcce
Confidence 999999998 332 11111 248999999999988 44789999999999
Q ss_pred EEEEccCCCeeEE-------ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC---CceeeEeccccCcceEE
Q 002264 521 KAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGV 590 (945)
Q Consensus 521 ~iwd~~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~ 590 (945)
.+|..+....+.. ..+.........|+|++..+++-+. .|..++|.... ......+.||.+ .|..
T Consensus 292 iiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~----~Gg~hlWkt~d~~~w~~~~~iSGH~~-~V~d 366 (764)
T KOG1063|consen 292 IIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR----TGGFHLWKTKDKTFWTQEPVISGHVD-GVKD 366 (764)
T ss_pred EEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc----cCcEEEEeccCccceeeccccccccc-ccee
Confidence 9998776544332 1222335788899999999998886 88899998332 233445667776 7999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC----eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCc-ccc
Q 002264 591 VQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-RSL 665 (945)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~-~~~ 665 (945)
+.|+|.|.++++.|.|.+-++|-.-.. ..+..-+.|++ .++|+++-+....+++|.+...+|+|+..... ..+
T Consensus 367 v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy--Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l 444 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY--DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL 444 (764)
T ss_pred eeecCCCCEEEEeccccceeeecccccccceeeecccccccc--cceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence 999999999999999999999875421 23333345555 78999998866678888888899999874320 000
Q ss_pred ccccC-----CccccccCcceeeeeccc---------ccceecc----CCCCCccc------------cccCCCCCC--C
Q 002264 666 RAVEN-----PPFEALRTPIESVALKVS---------ASSAVSS----GTPANCKV------------ERSSPVRPS--P 713 (945)
Q Consensus 666 ~~~~~-----~~~~~~~~~i~~v~~s~~---------g~~l~~~----~~~~~~~~------------~~~~~~~~~--~ 713 (945)
..+.+ .........+..+-+|.+ |..-+.. .....+.+ .+....... -
T Consensus 445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH 524 (764)
T KOG1063|consen 445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH 524 (764)
T ss_pred HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence 00000 000000111111111111 1100000 00000000 000000000 0
Q ss_pred cccCCCCCccCCCCCccccCCCC-----CCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeE
Q 002264 714 IINGVDPTSRSMDKPRTVDDVTD-----KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (945)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i 788 (945)
.+.-.....+++++.++++.... .|++|+..+-... ..+++ |+-.|+.++|||||++|++++.|.++
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-----~~L~~---HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-----QELEG---HSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-----heecc---cceEEEEEEECCCCcEEEEeecCceE
Confidence 01112234566777777765543 3678887642111 13444 99999999999999999999999999
Q ss_pred EEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCc--eEE
Q 002264 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF--KVM 865 (945)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~--~~~ 865 (945)
.+|+....... ..... ... .|..-|+++.|+||+.++|++| |.+|+||..... +.+
T Consensus 597 sl~~~~~~~~~------------------e~~fa-~~k--~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 597 SLYEVQEDIKD------------------EFRFA-CLK--AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred Eeeeeecccch------------------hhhhc-ccc--ccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhh
Confidence 99986432110 00000 022 2999999999999999999999 899999998876 333
Q ss_pred EE--ecCCCCCeeEEEeecCCCc----eEEEeecCceEEEEecc------c-c--e---EEEEecCCCcceeEEEecCC-
Q 002264 866 TT--FMSPPPASTFLAFHPQDNN----IIAIGTEDSTIHIYNVR------V-D--E---VKSKLKGHQKRITGLAFSTS- 926 (945)
Q Consensus 866 ~~--~~~h~~~i~~l~~s~~~~~----~lasg~~dg~v~vwd~~------~-~--~---~~~~l~~h~~~V~~l~~s~d- 926 (945)
.. ...+...|++++|.|-+.+ .+++|.+.|.|.+|... + + . .+....+|.+.|+.+.|+|.
T Consensus 656 ~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~ 735 (764)
T KOG1063|consen 656 SRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTC 735 (764)
T ss_pred hhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccc
Confidence 33 2347888999999875443 88999999999999965 1 1 1 11223458889999999975
Q ss_pred ---------cceeeeecCCceEEEEecC
Q 002264 927 ---------LNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 927 ---------g~~l~s~~~Dg~i~vWdl~ 945 (945)
...|++|+.|.+++++++.
T Consensus 736 ~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 736 SDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccccccceeEEeeecccceeEEeecc
Confidence 2357999999999999863
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=275.15 Aligned_cols=321 Identities=16% Similarity=0.242 Sum_probs=269.1
Q ss_pred EEEEeCCCcEEE---EeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEE
Q 002264 468 VVTCGDDKLIKV---WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (945)
Q Consensus 468 l~s~s~d~~i~v---wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 544 (945)
++.|..-+..+. |-......+.+.+|..+|+.+-|+|.. ..+++++.|++|++||..+++....+.+|...+..+
T Consensus 79 l~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di 156 (406)
T KOG0295|consen 79 LIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDI 156 (406)
T ss_pred cccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEE
Confidence 444443333333 433445567788999999999998854 688889999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 545 LYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
+|+..|+++++++. |-.+.+||..+ .++++...+|.. .+.+++|-|.|.++++++.|.+|+.|+..++-++.++
T Consensus 157 ~~~a~Gk~l~tcSs----Dl~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 157 SFDASGKYLATCSS----DLSAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred EEecCccEEEecCC----ccchhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 99999999999986 76799999887 567777778776 8999999999999999999999999999999999999
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
.+|.. .|..++.+.||.++|+++.|.++++|-+.++ ++...+..
T Consensus 232 ~~h~e--wvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~--------------------------------- 275 (406)
T KOG0295|consen 232 PGHSE--WVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QCKAELRE--------------------------------- 275 (406)
T ss_pred cCchH--hEEEEEecCCeeEEEecCCCceEEEEEeccc-hhhhhhhc---------------------------------
Confidence 88765 8999999999999999999999999999877 33333332
Q ss_pred cccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee
Q 002264 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (945)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 783 (945)
|.-.|.+++|.|...+ ...
T Consensus 276 -----------------------------------------------------------hEh~vEci~wap~~~~--~~i 294 (406)
T KOG0295|consen 276 -----------------------------------------------------------HEHPVECIAWAPESSY--PSI 294 (406)
T ss_pred -----------------------------------------------------------cccceEEEEecccccC--cch
Confidence 4445555555554320 000
Q ss_pred ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCc
Q 002264 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF 862 (945)
Q Consensus 784 ~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~ 862 (945)
.+ .. .+.. .++++++++ |++|++||+.++
T Consensus 295 ~~---------------------------------------at---~~~~--------~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 295 SE---------------------------------------AT---GSTN--------GGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred hh---------------------------------------cc---CCCC--------CccEEEeecccceEEEEeccCC
Confidence 00 00 0000 567899999 999999999999
Q ss_pred eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEE
Q 002264 863 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942 (945)
Q Consensus 863 ~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vW 942 (945)
.++.++.+|.+.|..++|+| +|++|+++.+|++++|||+.+++|+..+.+|..-|+++.|..+..+++||+-|.++++|
T Consensus 325 ~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred eEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 002264 943 V 943 (945)
Q Consensus 943 d 943 (945)
.
T Consensus 404 E 404 (406)
T KOG0295|consen 404 E 404 (406)
T ss_pred e
Confidence 6
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=255.04 Aligned_cols=288 Identities=17% Similarity=0.242 Sum_probs=248.4
Q ss_pred CcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 334 ~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
|....+++. |.+.|.++.|+-||+| .++++.|.+|++|+...|..++ .+.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceeeec
Confidence 444455555 8999999999999997 6777789999999999998874 388999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe---CCCceEEE
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLFN 489 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd---~~~~~~~~ 489 (945)
+.+.|...+++|+.|..|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++|| .+-++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999998888 7889999999999999998 999999999999999 44578889
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+......|.++.+. +..|++|+.||+++.||++.+.....+ -+++|++++|++|++..++++. ++.+++.
T Consensus 141 ldea~D~V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEec----ccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 98889999999874 367999999999999999987765543 4568999999999999999886 8999999
Q ss_pred eCCCCceeeEeccccCcce-EEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 570 NESEGTIKRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
|-.+|++++.+.+|.+... ..+++.....++++|++||.|++||+.....+..+..+.. ..|.+++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEec
Confidence 9999999999999987442 3367777888999999999999999999999999887764 2489999999877777765
Q ss_pred CCCcEEEEEC
Q 002264 649 ADNGFKILAN 658 (945)
Q Consensus 649 ~dg~i~iw~~ 658 (945)
. +.+.+|--
T Consensus 290 ~-~~~~~~~~ 298 (307)
T KOG0316|consen 290 G-HGDLFWYQ 298 (307)
T ss_pred C-Cceeceee
Confidence 3 45666644
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=270.23 Aligned_cols=246 Identities=17% Similarity=0.293 Sum_probs=227.4
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.++.+|.+.|.|+++.|...++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 5689999999999999999999999999999999999996554 7889999999999999988 9999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| ...+.++.+.||-+.|+|++.+|.- ..|++|+.|.++++||+++...+..+.+|...|.++.+.|-...+++++.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99 8889999999999999999999965 68999999999999999999999999999999999999998889999986
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|++|++||++.|+...++..|.. .+.+++.+|....|++++.| .|+-|++..|..+..+..+. ..|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~--~iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN--AIINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc--ceeeeeeec
Confidence 99999999999999999988877 89999999999889888877 69999999999988876654 478999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|| ++++|+++|.+.+||.+++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 875 7889999999999999988
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=305.84 Aligned_cols=285 Identities=22% Similarity=0.378 Sum_probs=250.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC--cccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
|...|.|+.|||+|++ +++++.|+.+++|+..+++ .. ..+.+|...|.+++|+|+|++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~-------------------~~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLL-------------------RELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhh-------------------ccccccccceeeeEECCCCcE
Confidence 5789999999999996 9999999999999996665 22 235789999999999999999
Q ss_pred EEEEECCCcEEEEEc-cCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
+++|+.|++|++||+ ..+..++ ++.+|...|++++|+|+|+ .+++|+.|++|++|| .+++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7889999999999999997 899999999999999 77999999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCCCC--eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
+++|.+ ++.+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 999976 66899999999999999999988 3455554444 5999999999999999986 889999999999
Q ss_pred ceeeEeccccCc--ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE--CC
Q 002264 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (945)
Q Consensus 575 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~--~d 650 (945)
.....+.+|... .+.....++.+.++++|+.|+.|++|+..++..+..+..+. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999875 23334557789999999999999999999999998888874 45889999999999999998 68
Q ss_pred CcEEEEECC
Q 002264 651 NGFKILANA 659 (945)
Q Consensus 651 g~i~iw~~~ 659 (945)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 899999753
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=258.85 Aligned_cols=251 Identities=18% Similarity=0.301 Sum_probs=219.1
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .++++|.|++++.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 3478999999999999999999999999999999976532 33346789999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+|+.++++++|...|+++..... +..++.+++.||++++||+++......+.. ..+++++.|..++..+++++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc
Confidence 99 999999999999999999984432 346788999999999999998777766533 346899999999999999997
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC----CeeEEEeecCCCCC--Cc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLP--NL 632 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v 632 (945)
|+.|++||++.+....++.||.+ .|+.+..+++|.++.+-+.|.++++||++. ..++..+.++.|.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 88899999999999999999998 899999999999999999999999999875 34577777665532 24
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..++|+|++..+..|+.|..+++||....
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc
Confidence 57899999999999999999999998654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=264.13 Aligned_cols=467 Identities=15% Similarity=0.188 Sum_probs=330.9
Q ss_pred EEeec-CCCcEEEEEEeCC--CCeEEEEE-eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 338 AVSLH-QGSTVISMDFHPS--HQTLLLVG-SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 338 ~~~~~-h~~~V~~v~fsp~--g~~llasg-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
.+.++ -...|+|++||+- |..+++.- +.+.-+.+||++.+..... .......|....
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~ 207 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLAT 207 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEE
Confidence 34444 5668999999984 44333332 3456788999988776532 333567889999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCcccccceeeccc-cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec
Q 002264 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 414 ~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~ 491 (945)
|.|.+..|+.....|.+.+|+.+++...+....+.++ +..|.|++|.++|+ ++||..+|.|.||+ ...+..+...
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~ 284 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVH 284 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEee
Confidence 9997766666666789999999998877766556544 35799999999998 79999999999999 5556666666
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
.|.+.|.+++... +| .|++|+.|+.|..|| ..-+.... +....+.|..++-. +.-+++++. .+.|..=
T Consensus 285 aH~ggv~~L~~lr--~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~--~~di~vGTt----rN~iL~G 354 (626)
T KOG2106|consen 285 AHDGGVFSLCMLR--DG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEG--KGDILVGTT----RNFILQG 354 (626)
T ss_pred ecCCceEEEEEec--Cc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecC--CCcEEEeec----cceEEEe
Confidence 9999999999765 44 566799999999999 33333333 33334567766533 223666654 4445444
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
.+.++ ......+|.+ ....++.+|+.+.+++++.|+.+++|+ ..+++...... .++.++.|+|.| .+|.|+.
T Consensus 355 t~~~~-f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 355 TLENG-FTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred eecCC-ceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeec
Confidence 44433 3334556666 788899999999999999999999999 44555444432 267999999999 9999999
Q ss_pred CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCc
Q 002264 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (945)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (945)
.|...+.|.++. ..+.... . ..++.++.|+|+|.++
T Consensus 427 ~G~w~V~d~e~~-~lv~~~~---d---~~~ls~v~ysp~G~~l------------------------------------- 462 (626)
T KOG2106|consen 427 TGRWFVLDTETQ-DLVTIHT---D---NEQLSVVRYSPDGAFL------------------------------------- 462 (626)
T ss_pred cceEEEEecccc-eeEEEEe---c---CCceEEEEEcCCCCEE-------------------------------------
Confidence 999999999874 3332221 1 4578999999998877
Q ss_pred cccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeec
Q 002264 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (945)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~ 809 (945)
+.|+.|+.|++|.+..... .+.. ... . +.+.|+.+.||+|++++.+.+.|-.|..|. +... ++.......
T Consensus 463 Avgs~d~~iyiy~Vs~~g~--~y~r--~~k-~-~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~~--~~~ts~kDv- 532 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGR--KYSR--VGK-C-SGSPITHLDWSSDSQFLVSNSGDYEILYWK-PSEC--KQITSVKDV- 532 (626)
T ss_pred EEecCCCeEEEEEECCCCc--EEEE--eee-e-cCceeEEeeecCCCceEEeccCceEEEEEc-cccC--cccceecce-
Confidence 6888889999999874211 1111 111 1 338899999999999999999999999993 2211 111111110
Q ss_pred cccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccC---ceEEEEecCCCCCeeEEEeecCCC
Q 002264 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT---FKVMTTFMSPPPASTFLAFHPQDN 885 (945)
Q Consensus 810 ~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~---~~~~~~~~~h~~~i~~l~~s~~~~ 885 (945)
-|-..+-.+-. ...+..+...|..++-|.+.+.+|+|. .|+|++|...- ......+.+|++.|++++|+. +.
T Consensus 533 --kW~t~~c~lGF-~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~-~d 608 (626)
T KOG2106|consen 533 --KWATYTCTLGF-EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC-KD 608 (626)
T ss_pred --eeeeeEEEEEE-EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEee-CC
Confidence 12211111111 111234778899999999999999999 59999998653 234567889999999999999 55
Q ss_pred ceEEEeecCceEEEEec
Q 002264 886 NIIAIGTEDSTIHIYNV 902 (945)
Q Consensus 886 ~~lasg~~dg~v~vwd~ 902 (945)
..+.+.+.|.+|..|++
T Consensus 609 ~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 609 SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceEEecCCCceEEEEEe
Confidence 56666669999999986
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=284.80 Aligned_cols=293 Identities=18% Similarity=0.290 Sum_probs=248.7
Q ss_pred CCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCccEE
Q 002264 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (945)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (945)
+|...++++. |...|+++.|.|..-.||++|+.|+.|+||++.. ++++ +.+.||..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l-------------------rtf~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL-------------------RTFKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee-------------------hhhhcchhhhh
Confidence 3556666665 9999999999994445899999999999999977 5554 45889999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
+++|+++|..+++++.|+.|++||+++|+++.. +. -...++|+.|.|++.. .|++|+.|+.|+.|| .+++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999987763 21 3457899999999955 889999999999999 99999999
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
+..|-+.|..+.|.+ +|..+++.+.|+++++|+.+....+.... .......++..+|++.++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 999999999999976 66899999999999999998876665433 33457789999999999998876 889999
Q ss_pred EeCCCC---ceeeEeccccCcc-eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCE
Q 002264 569 WNESEG---TIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNL 643 (945)
Q Consensus 569 wd~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~ 643 (945)
+.+... ...+.|.+|.... ...+.|||||.+|++|..||.+.+||.++.+++..+..|.. ++..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986542 3345677775433 34589999999999999999999999999999999988744 899999999 4568
Q ss_pred EEEEECCCcEEEEE
Q 002264 644 LAVTTADNGFKILA 657 (945)
Q Consensus 644 l~~~~~dg~i~iw~ 657 (945)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=267.14 Aligned_cols=274 Identities=19% Similarity=0.282 Sum_probs=233.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
....|+|+++..+ .+++|..|.+|+|||.++...+ .++.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~-------------------~~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECL-------------------KILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHH-------------------HhhhcCCCcEEeeecc--ceEEE
Confidence 3468999999633 4899999999999999887665 4589999999999985 66999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc---eEEEecCCCCCEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~---~~~~~~~~~~~v~ 498 (945)
+|+.|.+|++||+++|++++ ++-+|...|..+.|+.. +++|++.|.++.+|| .... +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999888 77789999999999853 899999999999999 4332 3356789999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
.+.|. .+++++++.|.+|++|++.+.+.+..+.+|...|-|+.+ .|++++++++ |.+|++||+..|.+++
T Consensus 325 vVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99873 379999999999999999999999999999998888876 4788888876 9999999999999999
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE-------EeecCCCCCCccEEEEcCCCCEEEEEECCC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT-------STDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
.++||.. -+.++.|. .+.+++|+.||+|++||+..+.... ....-.+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999987 89999996 5789999999999999998764321 1122234457888888 556888999999
Q ss_pred cEEEEECCCCc
Q 002264 652 GFKILANAIGL 662 (945)
Q Consensus 652 ~i~iw~~~~~~ 662 (945)
+|.|||..++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998773
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=271.25 Aligned_cols=240 Identities=15% Similarity=0.275 Sum_probs=215.0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
...|..+.|.|+|+.|++|+..|.+.+|+..+-. .+ ..++.|..+|.++.|+++|. +++||+.+|.|++|+.+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FE--tilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FE--TILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-HH--HHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 4589999999999999999999999999964321 11 14568999999999999999 8999999999999996666
Q ss_pred eEEEecCCC-CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 486 KLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 486 ~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
.++.+.+|. ..|.+++|+|. | ..+++++.||+|+|||.........+.+|+-.|.++.|+|....+++++. |.
T Consensus 171 nVk~~~ahh~eaIRdlafSpn-D-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----Dn 244 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPN-D-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----DN 244 (464)
T ss_pred hhHHhhHhhhhhhheeccCCC-C-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----Cc
Confidence 667777665 89999999984 3 68999999999999999999888889999999999999999999999985 77
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCE
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNL 643 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~ 643 (945)
.|++||.+++.++.++.+|.. .|..+.|++++++|+++|.|..++++|+++.+.+..+.+|.. .|++++|+| ...+
T Consensus 245 lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccccc
Confidence 999999999999999999988 899999999999999999999999999998888888877654 899999999 6778
Q ss_pred EEEEECCCcEEEEECC
Q 002264 644 LAVTTADNGFKILANA 659 (945)
Q Consensus 644 l~~~~~dg~i~iw~~~ 659 (945)
|.+|+.||.|..|.+.
T Consensus 322 ftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVG 337 (464)
T ss_pred eeeccCCCceEEEecc
Confidence 9999999999999886
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-29 Score=259.55 Aligned_cols=520 Identities=13% Similarity=0.152 Sum_probs=354.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC-CccEEEEEEcCCCCEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYV 421 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~s~~g~~l 421 (945)
...+|.|+|||.+.+. ||.|-.||.|.||++..+=.. ..++.++ ...|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~------------------~~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFL------------------EPVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCcee------------------eEEEecCCCCceeeEEEc-cCCeE
Confidence 4569999999999985 899999999999999874322 1334554 5789999999 55567
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE--EEecCCCCCEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVY 498 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~--~~~~~~~~~v~ 498 (945)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|+.||.+..++ ..+... ..|...++.|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 788889999999999987766 6667888999999999998 889999999777777 444433 23444568899
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-----C---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----A---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
+++|++ ++..+++|+.||.|++||...+....... . ...-|.++.|-.++ .++++- ..|.|.+||
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTVTFWD 231 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceEEEEc
Confidence 999977 55789999999999999999888776221 1 22256777777555 455553 489999999
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee--EEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
...+.+++.+..|.. .+.+++..+++++++++|.|+.|.-|...++.. +.......|...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999887 899999999999999999999999998876533 222222233348999999887 899999
Q ss_pred CCCcEEEEECCCCccccccccCCccccccCcce-eeeecccccceeccCCCCCccccccCCCCC---------CCccc--
Q 002264 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIE-SVALKVSASSAVSSGTPANCKVERSSPVRP---------SPIIN-- 716 (945)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~---------~~~~~-- 716 (945)
.|.++.+-....-. ...|.... .-+-. .+...|..++++ -.......+++...... .....
T Consensus 309 ~d~~l~i~~s~~~~-----~~~h~~~~-~~p~~~~v~~a~~~~L~~-~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~ 381 (691)
T KOG2048|consen 309 RDFTLAICSSREFK-----NMDHRQKN-LFPASDRVSVAPENRLLV-LWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE 381 (691)
T ss_pred eeeEEEEccccccC-----chhhhccc-cccccceeecCccceEEE-EeccccccceeccCcccccccChhhheeeecCC
Confidence 99999887654310 00010000 00000 111222222211 11111111122111100 00000
Q ss_pred ---CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEe
Q 002264 717 ---GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWK 792 (945)
Q Consensus 717 ---~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~ 792 (945)
-.....+|+|++++.+.- ...++|.+.... ..............-....+.|+-|+..++.++ ....+.+.+
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~---~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~e 457 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTV-SRTKIYRLQPDP---NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFE 457 (691)
T ss_pred ccceeeeccCCCCCEEEEeec-cceEEEEeccCc---ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEE
Confidence 123457899999888876 566777776422 222222222222445677889999998888887 566777666
Q ss_pred ecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCC
Q 002264 793 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP 871 (945)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h 871 (945)
++.+.+..... +........|..++.|+||+|+|+.+ .|.|.+|++.+++........
T Consensus 458 l~~ps~kel~~---------------------~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl 516 (691)
T KOG2048|consen 458 LETPSFKELKS---------------------IQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL 516 (691)
T ss_pred ecCcchhhhhc---------------------cccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc
Confidence 54332211100 00101456799999999999999998 899999999988775555345
Q ss_pred CCCeeEEEeecCCCceEEEeecCceEEEEecccceE-----------EEEecCCCcceeEEEecCCcce
Q 002264 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-----------KSKLKGHQKRITGLAFSTSLNI 929 (945)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~-----------~~~l~~h~~~V~~l~~s~dg~~ 929 (945)
...|++++|+|.+...|+.+..+++|+-||++..+. -...+.-...+..+.|.|..+.
T Consensus 517 n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s 585 (691)
T KOG2048|consen 517 NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSS 585 (691)
T ss_pred CcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCcc
Confidence 688999999976888999999999999999953321 1111223356778888765443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=278.19 Aligned_cols=282 Identities=26% Similarity=0.421 Sum_probs=249.3
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
+|.++|++++|+|+++ +|++|+.||.|.+|++.+++... .+.+|...+.++.|+|+++++
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 5899999999999998 58899999999999998776432 256788899999999999999
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
++++.||.|++|++.+++.+. .+..|...|.++.|++++. ++++++.|+.+++|| .+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999875555 5668998999999999987 788888899999999 6688888888999999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||+.+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99875 578888888999999999988888888888889999999999999998875 889999999999888888
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..+.. .+..+.|++++.++++++.||.|++|++.++.....+..+. ..|.+++|+|+++++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77765 78899999998888888889999999999988888887543 4899999999999999999999999995
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=288.14 Aligned_cols=245 Identities=19% Similarity=0.345 Sum_probs=225.4
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--------cc--------------------ccceeeccccccEEEE
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--------DL--------------------RQHSQIDAHVGAVNDL 457 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~--------~~--------------------~~~~~~~~h~~~v~~l 457 (945)
...++|..||+|+++||.|..|..|++|.+...+ .+ ....++.+|.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4579999999999999999999999999987311 00 1123578999999999
Q ss_pred EEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC
Q 002264 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (945)
Q Consensus 458 ~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (945)
.|+|+.+ +|++||.|+++|+|. .+..++..++||..+|+.+.|+| .|-++++++.|++-++|..+...+...+.+
T Consensus 458 sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999 999999999999999 88899999999999999999987 568999999999999999999889999999
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
|-..|.|+.|+|+..++++++. |.++++||..+|..++.|.||.. +|.+++|+|+|.+|++|+.||.|.+||+.+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999999999999986 99999999999999999999988 899999999999999999999999999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++++..+..| .+.|.++.|+.||..||+|+.|++|++||+...
T Consensus 609 ~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred Ccchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999887 458999999999999999999999999998654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-29 Score=259.86 Aligned_cols=496 Identities=14% Similarity=0.139 Sum_probs=352.1
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccc-cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
-..+|.++|||.+.+.||.+-.||.|.+|++..+=.... .+.++ ...|.+++|++.+ .|.|.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 456899999999999999999999999999988644333 44444 5689999999655 588899999999999 9
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+++.+..+....+.|++++.+|.. ..++.|+.||.+..++...+..... +....+.+.+++|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998865 6899999999777777666555443 3344578999999999999999986
Q ss_pred CCCceEEEEeCCCCceeeEec----cc---cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 561 DGDSFLVEWNESEGTIKRTYA----GF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
||.|++||...+..+.... +. ....++++.+-.+ ..+++|...|.|.+||...+.+++.+..+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999987766221 11 2224667777644 5899999999999999999999999887754 899
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCC-----
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP----- 708 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~----- 708 (945)
+++.++++.++++++.|+.|..+...++... -........+...+.+++..++ .+++|..+....+.-...
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~ 325 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMD 325 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc--eeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchh
Confidence 9999999999999999999999988776431 1111222334445777777766 444443333332211111
Q ss_pred CCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecC-----CcceeeecCCCCCCccceEEEEEecCCCeEEEee
Q 002264 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS-----GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (945)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 783 (945)
.+....+...........+.++.-..+..+.+|.+...... ..+..+.++ ....|.+.+.||+|++++.+.
T Consensus 326 h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k----~~~nIs~~aiSPdg~~Ia~st 401 (691)
T KOG2048|consen 326 HRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTK----EKENISCAAISPDGNLIAIST 401 (691)
T ss_pred hhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecC----CccceeeeccCCCCCEEEEee
Confidence 01111222233333344445555555677888887764322 122222333 456799999999999776654
Q ss_pred ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccC
Q 002264 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT 861 (945)
Q Consensus 784 ~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~ 861 (945)
-...++|.+.... .+. +-.... .+. ..-....+.|+-|+..++.++ ...+.++++.+
T Consensus 402 -~~~~~iy~L~~~~-----~vk------~~~v~~-------~~~--~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ 460 (691)
T KOG2048|consen 402 -VSRTKIYRLQPDP-----NVK------VINVDD-------VPL--ALLDASAISFTIDKNKLFLVSKNIFSLEEFELET 460 (691)
T ss_pred -ccceEEEEeccCc-----cee------EEEecc-------chh--hhccceeeEEEecCceEEEEecccceeEEEEecC
Confidence 4467888765322 100 000000 111 233567788888888777776 46688888765
Q ss_pred ce--EEEEec--CCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEec-CCcceeeeecCC
Q 002264 862 FK--VMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS-TSLNILVSSGAD 936 (945)
Q Consensus 862 ~~--~~~~~~--~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s-~dg~~l~s~~~D 936 (945)
.. .+..+. +-...|..+..|| +|++||+.+.+|.|.+|++++++...-...-...|+.++|+ ++-..|+.+..|
T Consensus 461 ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 461 PSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred cchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecC
Confidence 43 222222 2456799999999 99999999999999999999886544443344789999999 466788889999
Q ss_pred ceEEEEec
Q 002264 937 AQVTLCVE 944 (945)
Q Consensus 937 g~i~vWdl 944 (945)
+.++-+|+
T Consensus 540 nQv~efdi 547 (691)
T KOG2048|consen 540 NQVFEFDI 547 (691)
T ss_pred CeEEEEec
Confidence 99988886
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=241.87 Aligned_cols=292 Identities=15% Similarity=0.247 Sum_probs=237.6
Q ss_pred ccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcccccceee-ccccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
+.+.+|.+.|..++|+|- |..||+|+.|..|++|+..++........+ .+|+..|.+++|+|.|+ +|+++|.|.++
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~ 85 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATV 85 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceE
Confidence 457899999999999998 999999999999999999865444333333 37999999999999999 99999999999
Q ss_pred EEEe-CCC--ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC---eeEEecCCCCeEEEEEEcCCCC
Q 002264 478 KVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 478 ~vwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~ 551 (945)
.||. ..+ +++..+.||...|.|++|+. +|.+|++++.|+.|-+|.+.... ....+..|...|..+.|+|...
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 9999 433 67899999999999999976 66899999999999999987543 3456788888999999999999
Q ss_pred EEEEEeecCCCCceEEEEeCC---CCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNES---EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
.|++++. |++|++|+-. ...+.+++.+|.. .+.+++|++.|..|++++.|++++||...+. +. ..+
T Consensus 164 lL~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~ 232 (312)
T KOG0645|consen 164 LLFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMH 232 (312)
T ss_pred eeEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhc
Confidence 9999997 9999999866 3468899999988 8999999999999999999999999986522 21 123
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC-ccccccccCCccccccCcceeeeecccccceeccCCCCCccccccC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG-LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (945)
...+..+.|. ...||+++.|+.|++|.-... ....-.+-.+....+...|+++++.|.+.
T Consensus 233 sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~----------------- 293 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS----------------- 293 (312)
T ss_pred ccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC-----------------
Confidence 4478899998 458999999999999987643 11112222233344555799999998532
Q ss_pred CCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
+.+++++.||.+++|.+.
T Consensus 294 -------------------~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 -------------------NRLASGGDDGIVNFWELE 311 (312)
T ss_pred -------------------CceeecCCCceEEEEEec
Confidence 234789999999999864
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=247.23 Aligned_cols=289 Identities=19% Similarity=0.268 Sum_probs=254.3
Q ss_pred ceEEeecCCCcEEEEEEeC---CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 336 TVAVSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp---~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
.++..-+|+.+|-.++||| +| |+|++++.||.-.+=+-++|..+. .+.||.+.|.+.
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~ 65 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSA 65 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeee
Confidence 4455667999999999996 66 579999999999998888888773 489999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEe
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNF 490 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~ 490 (945)
..+.+...-|+++.|-+-++||.-+|..+.. + .|..-|.+++|+.|.+ +|++|+.++.++||| ....+...+
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhh
Confidence 9999999999999999999999999988763 3 4888999999999999 899999999999999 445577889
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
.+|.+.|..+.|.... +.+++.+.|++||+||.+++.....+.... +|+++.++++|++|.++. .+.|..||
T Consensus 140 ~ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilTia~-----gssV~Fwd 211 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILTIAY-----GSSVKFWD 211 (334)
T ss_pred cCCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEEEec-----CceeEEec
Confidence 9999999999997643 678888999999999999999988877654 599999999999988775 66899999
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
..+..+++.+.... .|.+.+++|+...+++|++|..++.||..+++.+..+ ..+|.++|.|+.|+|||..-++|+.|
T Consensus 212 aksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 212 AKSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCC
Confidence 99999998887654 4888899999999999999999999999999998886 23456699999999999999999999
Q ss_pred CcEEEEECCCC
Q 002264 651 NGFKILANAIG 661 (945)
Q Consensus 651 g~i~iw~~~~~ 661 (945)
|+|++|....+
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 99999998665
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=263.64 Aligned_cols=293 Identities=13% Similarity=0.183 Sum_probs=246.9
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+++..|.+.|.-+.||++|+|||+++.|.+..+|.+.....++...++.+|..+|..+.||||.+ ++++|+.|..+++
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheee
Confidence 55889999999999999999999999999999999987776777778999999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEEEEE
Q 002264 480 WE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 480 wd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~ 556 (945)
|| .+|.....+. ++...+.+++|.| ||..+++|+.|+++..||++.... ....+ ....|.+++.++||+++++.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEE
Confidence 99 8888776664 3467899999987 668899999999999999875432 22222 23469999999999999988
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
+. |..|++++..+.........+. .+++.+++.+++++++.-.+..+++||+.....+..+.++....-+..-+
T Consensus 373 ~~----d~~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 373 TV----DKKIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ec----ccceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 85 8899999988766555444443 68999999999999999999999999999888888887776544555556
Q ss_pred EcC-CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcc
Q 002264 637 FSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (945)
Q Consensus 637 ~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 715 (945)
|.- +..++++|++|+.|+||+..++ .++..+.||.. .+.+|+++|....+
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~-----~vNcVswNP~~p~m----------------------- 497 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSK-----TVNCVSWNPADPEM----------------------- 497 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcc-----eeeEEecCCCCHHH-----------------------
Confidence 654 5689999999999999999998 78888988875 48899999986554
Q ss_pred cCCCCCccCCCCCccccCCCCCCcccccce
Q 002264 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (945)
Q Consensus 716 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (945)
+|+++.||+|++|....
T Consensus 498 -------------~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 498 -------------FASASDDGTIRIWGPSD 514 (519)
T ss_pred -------------hhccCCCCeEEEecCCc
Confidence 48999999999998763
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=273.61 Aligned_cols=290 Identities=16% Similarity=0.218 Sum_probs=250.9
Q ss_pred ccccCCCccEEEEEEcC-CCCEEEEEECCCcEEEEEccC-CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~-~g~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
..+.||...|+++.|.| .+.+|++|+.|+.|+||++-. +.+++ ++.+|..+|.+++|+++|. .|+|+|.|+.+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~l 282 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFL 282 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceee
Confidence 46889999999999999 899999999999999999977 66666 8899999999999999999 89999999999
Q ss_pred EEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEE
Q 002264 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 478 ~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
++|| .+|+++..+. ....++|+.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999 9999999887 45678999999975 4799999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC---eeEEEeecCCCCCCcc
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV---NILTSTDAEGGLPNLP 633 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~ 633 (945)
+. ++.+++|+.+.+..++...........++..+|+++++++-+.|+.|.+|.+... ...+.+.+|...+.-.
T Consensus 361 SD----dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 361 SD----DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred cc----CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 86 8899999999988877666555556778999999999999999999999986542 2334555555455667
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCC
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (945)
.+.|||||.+|++|+.||.+.+||.++- ..+..+..|. .++..+.|.|.....
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~-----~~ci~v~wHP~e~Sk--------------------- 489 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHD-----QPCIGVDWHPVEPSK--------------------- 489 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCC-----cceEEEEecCCCcce---------------------
Confidence 8999999999999999999999999887 6666666653 357788888875433
Q ss_pred cccCCCCCccCCCCCccccCCCCCCcccc
Q 002264 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (945)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (945)
+++++.+|.|++|+
T Consensus 490 ---------------vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 ---------------VATCGWDGLIKIWD 503 (503)
T ss_pred ---------------eEecccCceeEecC
Confidence 47889999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-30 Score=305.11 Aligned_cols=292 Identities=14% Similarity=0.180 Sum_probs=236.5
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~ 419 (945)
..|.+.|++++|+|+|+ ++|+|+.|++|+||+..+...... .. ......+. +...|.+++|++ ++.
T Consensus 480 ~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~~----------~~~~~~~~-~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-DI----------HYPVVELA-SRSKLSGICWNSYIKS 546 (793)
T ss_pred cCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-cc----------ccceEEec-ccCceeeEEeccCCCC
Confidence 34899999999999999 599999999999999764211000 00 00001122 346899999988 578
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v 497 (945)
+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..+
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999999999999999886655 6778999999999997 667 899999999999999 778888888754 678
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC---
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~--- 573 (945)
.++.|.+. ++.++++|+.||.|++||++... ....+..|...|.++.|. ++..+++++. |+.|++||+..
T Consensus 621 ~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~ 694 (793)
T PLN00181 621 CCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSIS 694 (793)
T ss_pred EEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcc
Confidence 89998643 57899999999999999998765 455677888899999997 7788888885 89999999974
Q ss_pred ---CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee-----------cCCCCCCccEEEEcC
Q 002264 574 ---GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSK 639 (945)
Q Consensus 574 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~sp 639 (945)
...+..+.+|.. .+..++|++++.+|++|+.||.|++|+......+..+. ...+...|.+++|+|
T Consensus 695 ~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 356778888876 78889999999999999999999999987665443321 122334689999999
Q ss_pred CCCEEEEEECCCcEEEEEC
Q 002264 640 EGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~ 658 (945)
++..|++|+.||.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-30 Score=285.08 Aligned_cols=256 Identities=22% Similarity=0.374 Sum_probs=225.8
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--C
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~ 482 (945)
|...|.++.|+++|+++++++.|+.+++|+..+++. .....+.+|...|.+++|+|+++ ++++++.|++|++|| .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977662 22235689999999999999999 999999999999999 3
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.+..++++.+|...|++++|+|. ++++++|+.|++|++||+++++....+..|...|++++|+++++.+++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 44788999999999999999885 489999999999999999999999999999999999999999999999975
Q ss_pred CceEEEEeCCCCc--eeeEeccccCc-ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC-CCccEEEEc
Q 002264 563 DSFLVEWNESEGT--IKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFS 638 (945)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s 638 (945)
|+.|++||+.++. +...+.++... .+..+.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 9999999999999 56778877775 6899999999999999999999999999999998888877543 244555667
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccccC
Q 002264 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
+.+.++++|+.|+.|.+|+..++ ..+..+.+
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 89999999999999999999876 44444433
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=265.20 Aligned_cols=247 Identities=23% Similarity=0.398 Sum_probs=218.3
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.+|.++|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence 366899999999999999999999999999999999876444 5678999999999999998 89999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
| ..++.+..+..|...+.++.|++. +.++++++.||.+.+||+.+.+....+..+...+.++.|+|++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ- 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-
Confidence 9 666788888899999999999874 578888888999999999988888888878888999999999888888764
Q ss_pred CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
++.+++||+++++....+..+.. .+.++.|+|+++.+++++.+|.|++||+.+++.+..+..+. ..+.+++|+|
T Consensus 156 ---~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~ 229 (289)
T cd00200 156 ---DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSP 229 (289)
T ss_pred ---CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEcC
Confidence 88999999999988888887765 78999999999999999999999999999988888775543 3899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 002264 640 EGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++.++++++.||.|++|+..++
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCc
Confidence 9989998888999999998754
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=297.12 Aligned_cols=270 Identities=15% Similarity=0.205 Sum_probs=216.1
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC----ccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDL 441 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~----~~~ 441 (945)
+|.+++|+..+.+.... + ....+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--~------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--L------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--e------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888765443211 0 11224569999999999999999999999999999997542 111
Q ss_pred c-cceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCe
Q 002264 442 R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (945)
Q Consensus 442 ~-~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (945)
. ....+ .+...|.+++|++.... ++++++.||+|++|| .+++.+..+.+|...|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11122 34568999999986433 899999999999999 788889999999999999999864 4579999999999
Q ss_pred EEEEEccCCCeeEEecCCCCeEEEEEEc-CCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCC
Q 002264 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 520 i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
|++||++++.....+..+ ..+.++.|+ +++..+++++. ++.|++||+++++ ....+.+|.. .+..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988877777654 468899995 57889998885 8999999998765 4667777776 78899997 67
Q ss_pred CEEEEEECCCcEEEEECCCC------eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 598 NHFLAVGEDSQIKFWDMDNV------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+++++.|+.|++||+..+ .++..+..|. ..+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 4566666554 47899999999999999999999999997654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=231.60 Aligned_cols=274 Identities=17% Similarity=0.231 Sum_probs=233.0
Q ss_pred cccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 399 ~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
.+++..|.++|..+.|+-||+|.++++.|.+|++|+...|..++ ++.+|...|..++.+.|+. .|++|+.|+.+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 35678899999999999999999999999999999999998887 8899999999999999998 799999999999
Q ss_pred EEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC--CeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+|| .+|+.+++|.+|.+.|+.+.|+. +...+++|+.|.++++||.++. ++++.+......|.++..+ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 99999999999999999999965 5589999999999999998764 4455666666678888765 557777
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
++. ||+++.||++.|....-+.++ +|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....=..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 776 999999999999887776664 7999999999999999999999999999999999999988776555677
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
+++.....+++|++||.|.+||+.+... +..+..+... .+..+.+.|.-..++
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~-~sk~~~~~~v----~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQ-ISKLSVVSTV----IVTDLSCHPTMDDFI 286 (307)
T ss_pred eecccceeEEeccCCceEEEEEecccee-eeeeccCCce----eEEeeecccCcccee
Confidence 8888888999999999999999988733 3333222111 156677777654443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=251.57 Aligned_cols=230 Identities=16% Similarity=0.291 Sum_probs=202.3
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
...|+|+.+ |...+++|..|.+|+|||..+-.+++ .+.||++.|.|+.|. .+ .+++|+.|.+|++|| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457999998 56789999999999999999877776 788999999999995 44 899999999999999 999
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---EEecCCCCeEEEEEEcCCCCEEEEEeecCC
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 561 (945)
+++.++.+|...|..+.|+. .++++++.|.++.+||+.....+ ..+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999852 58999999999999999876533 3566788889998885 458998874
Q ss_pred CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC
Q 002264 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g 641 (945)
|.+|++|+..+++.++++.+|.. .+.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.| |.
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DN 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheee--cC
Confidence 99999999999999999999987 5665555 488999999999999999999999999988765 7999999 56
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 002264 642 NLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.+++|+.||+|++||+.++
T Consensus 411 krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ceeeeccccceEEEEecccc
Confidence 79999999999999999876
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=235.89 Aligned_cols=307 Identities=14% Similarity=0.229 Sum_probs=241.1
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCccccc-cccccccc-ccCcccccccccCCCccEEEEEEc
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSK-PFKIWDMA-ACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
.+...|++++.|.+|||||. |+|+|+.|..|+|.|++.. +... ...+..-. ...+++ .+.+..|...|+++.|+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildverm--laks~~~em~~~~~qa~hPv-IRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERM--LAKSKPKEMISGDTQARHPV-IRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhh--hhhcchhhhccCCcccCCce-EeehhhccCcccceeec
Confidence 45567999999999999999 7999999999999998621 1100 00000000 011121 24678899999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe---c
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---E 491 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~---~ 491 (945)
|....|++|+.|++|+++|+......+.++.+ ....+|.++.|.|.|. +++.|....++++|| .+-++...- .
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccc
Confidence 99999999999999999999765444433333 3567899999999999 899999999999999 666554332 4
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-C-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-P-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+|.+.|+++.+++ .+++.++++.||.|++||--+..++.++.. | +..|.+..|..+|+++++.|. |..+++|
T Consensus 259 qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLW 332 (430)
T KOG0640|consen 259 QHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLW 332 (430)
T ss_pred ccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeee
Confidence 6899999999876 568999999999999999877777765543 3 348999999999999999986 9999999
Q ss_pred eCCCCceeeEeccccCc----ceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 570 NESEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
.+.+++.+..+.|.... .-+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.-+|.+.-+
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCce
Confidence 99999999999875211 123355777777777765 467899999999887766654 556789999999999999
Q ss_pred EEEECCCcEEEEEC
Q 002264 645 AVTTADNGFKILAN 658 (945)
Q Consensus 645 ~~~~~dg~i~iw~~ 658 (945)
.+++.|..+|+|--
T Consensus 412 mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 412 MTCSDDFRARFWYR 425 (430)
T ss_pred eeecccceeeeeee
Confidence 99999999999964
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=255.64 Aligned_cols=292 Identities=17% Similarity=0.229 Sum_probs=251.0
Q ss_pred CCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE
Q 002264 332 DLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (945)
Q Consensus 332 ~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (945)
.+|......++ |.++|..+.|-++.. .|++|+.|..|.+|++..++... ...+.|..++|+
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~it 223 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNIT 223 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCcc
Confidence 45666667777 999999999999977 49999999999999998766321 145778889999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
++.|.++++++++++.|+.+++|+++...... ++.+|++.|+++.|..... .+++|+.|.+|++|| ....+..+
T Consensus 224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 224 SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred eeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheecc
Confidence 99999999999999999999999999876555 7889999999999998777 699999999999999 77777665
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+. ....+..|+.. ...+++|-.|+.|++||++..........++ .|+++..++++..+++++. |..+.+.
T Consensus 299 ~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~vi 368 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKVI 368 (459)
T ss_pred cc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceeee
Confidence 54 33456666654 2568999999999999999999988888776 7999999999999999986 8899999
Q ss_pred eCCCCceeeEecccc---CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEE
Q 002264 570 NESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 570 d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~ 646 (945)
|+++.+....+.... ....+.+.|+|++.++++|+.||.|+||++.++++...+........|++++|+|.|..+++
T Consensus 369 DlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred ecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 999999888776432 12367799999999999999999999999999999999988766557999999999999999
Q ss_pred EECCCcEEEE
Q 002264 647 TTADNGFKIL 656 (945)
Q Consensus 647 ~~~dg~i~iw 656 (945)
++.++.+.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 9999999999
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=252.31 Aligned_cols=284 Identities=19% Similarity=0.280 Sum_probs=239.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
..+.|++++|||...+=+|+.+ .-.+.||+..+..... .+......|+++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEEE
Confidence 3458999999997665455544 4678999987766542 1334567899999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~ 501 (945)
+|...|.|+|+|+++...++ .+.+|+.+|..+.|+|+++. .|++|+.|+.+++|| .+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977755555 67899999999999998887 899999999999999 55555558899999999999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEe
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTY 580 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~ 580 (945)
|+|.. +.++++||.||.|++||++.......--.|+.+|.++.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 99874 47999999999999999998865555556888999999999999999997 6789999999654 44445
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
..|++ .|+|+++..++..|++++-|+.+++||+.+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+-+...
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehhhc
Confidence 55666 89999999999999999999999999999999999887754 899999999999999999999988764433
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=243.74 Aligned_cols=289 Identities=19% Similarity=0.331 Sum_probs=241.5
Q ss_pred CcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
|+.....+-|.+.|.++... ++ .+.+|+.||.++|||.. |+.. ..+.||.++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~-------------------~~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSI-------------------KTIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceE-------------------EEEecCCcceeeeE
Confidence 45667778899999999998 45 48999999999999975 4443 33789999999888
Q ss_pred EcCCC---CEEEEEECCCcEEEEEccCCccc-ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC----
Q 002264 414 WSPDG---NYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---- 484 (945)
Q Consensus 414 ~s~~g---~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---- 484 (945)
|--.. ..+++++.|.++++|.++.++.. .......||...|.++...++|. .+++|+.|.+|++|+ ...
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 85433 35999999999999999877643 22223459999999999999999 899999999999998 211
Q ss_pred ---------------------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEE
Q 002264 485 ---------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 485 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 543 (945)
.++..+.+|..+|.++.|.+ ...+++++.|.+|+.||+.+++....+.... .+.+
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~ 305 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNC 305 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecCc-ceeE
Confidence 23567889999999999975 3589999999999999999998888776544 5899
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCc---eeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCe-
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN- 618 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~- 618 (945)
+.++|..++|++++. +..+++||.+++. ..+.|.+|.+ -|..+.|+|.. .+|++|+.||++++||+++..
T Consensus 306 i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ 380 (423)
T KOG0313|consen 306 ISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA 380 (423)
T ss_pred eecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCC
Confidence 999999999999987 8999999999763 4567889988 89999999975 567789999999999999877
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
++..+..|. ..|.++.|+. +..+++|+.|.+|+|+...
T Consensus 381 plydI~~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 381 PLYDIAGHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cceeeccCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 888887664 4899999984 6789999999999998653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=228.27 Aligned_cols=288 Identities=11% Similarity=0.118 Sum_probs=238.0
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
++.+.+|+.+++.+.|+.+|. ||.+++.|.++.||-..+|+.+- .+.||.+.|.|+..+-
T Consensus 3 pi~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~ 62 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDW 62 (327)
T ss_pred ccccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecC
Confidence 355667999999999999999 89999999999999988898874 3889999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-----CCCcEEEEe-C-------C
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-L-------S 483 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-----~d~~i~vwd-~-------~ 483 (945)
+.+++++|+.|.++++||+++|+++.. + .-..+|..+.|+++|+ +++.+. ..+.|.++| . .
T Consensus 63 ~s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s 136 (327)
T KOG0643|consen 63 DSKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDS 136 (327)
T ss_pred CcceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence 999999999999999999999988763 3 2567899999999999 444433 346788998 4 3
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
..+...+..+.+.++.+-|.|. ++.|++|..||.|.+||++++.... ....|...|+.+.+++|..++++++.
T Consensus 137 ~ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~---- 210 (327)
T KOG0643|consen 137 EEPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK---- 210 (327)
T ss_pred cCceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----
Confidence 3557888888999999999885 4799999999999999999976554 45778889999999999999999986
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCc--EEEEECCCC------------eeEEEeecCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ--IKFWDMDNV------------NILTSTDAEGG 628 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~------------~~~~~~~~~~~ 628 (945)
|.+-++||..+-+.++++.... ++++.+++|...+++.|+.... |.-=+.+.| +.+..+. +|
T Consensus 211 Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GH 286 (327)
T KOG0643|consen 211 DTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GH 286 (327)
T ss_pred CccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--cc
Confidence 8899999999999999998754 6999999998888888764322 211122222 2233333 55
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.++|++++|+|+|+..++|+.||.|++.....
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 67999999999999999999999999986653
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=274.66 Aligned_cols=306 Identities=19% Similarity=0.274 Sum_probs=249.6
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEe--CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
|++..|.+++.+|||.. +|||+ .||.++||+...--. ..+.++.. .+.+......|.+.|+|+.|||||+
T Consensus 11 H~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 35668999999999995 99999 899999998653211 01111111 2223334678999999999999999
Q ss_pred EEEEEECCCcEEEEEccC----------C-----cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 420 YVGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
+||+|+.|+.|.||.... | +..+....+.+|.+.|.+++|+|++. +|+++|.|++|.+|| .+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999873 0 11234457889999999999999999 999999999999999 88
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------CCeEEEEEEcCCCCEEEEEe
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~ 557 (945)
.+.+..+.+|.+.|..+.|.| -|++|++-+.|++|++|++..-+....+..+ ...+..+.|||||++|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 899999999999999999977 5599999999999999997765555555443 23678899999999999987
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC-----CC------------EEEEEECCCcEEEEECCCCeeE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
+-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|++|.||.....+++
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 7666778899999988898899999998 8999999872 11 5677899999999999877776
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+..-. ...|.+++|+|||..|++++.||+|.++..+..
T Consensus 318 ~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 318 FVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6554322 237999999999999999999999999998653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=249.64 Aligned_cols=215 Identities=17% Similarity=0.219 Sum_probs=159.8
Q ss_pred EEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 338 ~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
+..++ |++.|+.+.|||-...|||+||.|..|+||.+..|-... + ....-.+.+..-.|.|+.|+|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~---L----------Sape~~~g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK---L----------SAPEIDVGGGNVIVECLRFHP 138 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc---c----------CCcceeecCCceEEEEeeccc
Confidence 33444 999999999999877799999999999999997443211 0 001122444456789999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHE 494 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~ 494 (945)
..+-|...+..|+++|||+.+++.+. .+.+|...|.++.|+.||. +++++++|+.|+||| ..++.++...+|.
T Consensus 139 TaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 139 TADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred CcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccc
Confidence 77666666678999999999987766 7889999999999999999 999999999999999 6788888888887
Q ss_pred CC-EEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCe-eEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 495 AP-VYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGS-RVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 495 ~~-v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~-~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
+. -..+.| -++-..|++.+.+ ..|++||.+.... ..++... ...|.---|.||.++|+.+|. |+..++
T Consensus 214 ~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~ 288 (1012)
T KOG1445|consen 214 GMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLF 288 (1012)
T ss_pred cchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEE
Confidence 64 223344 3344567776665 4689999876443 2233222 224555668899999988874 688898
Q ss_pred EEeCCCCc
Q 002264 568 EWNESEGT 575 (945)
Q Consensus 568 iwd~~~~~ 575 (945)
++.+...+
T Consensus 289 ~lE~~d~q 296 (1012)
T KOG1445|consen 289 MLEMQDRQ 296 (1012)
T ss_pred EEEecCCC
Confidence 88876544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=223.46 Aligned_cols=233 Identities=14% Similarity=0.226 Sum_probs=202.8
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-..+|+.+. ++.+|++.|+|++...+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999988898777 8999999999999999999 89999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-----CCeEEEEEcc-------CCCeeEEecCCCCeEEEEEEc
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s 547 (945)
| .+|+.+..++ ...+|..+.|++. |++++.... .+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999998887 5678999999874 456655543 3678999987 345567777888899999999
Q ss_pred CCCCEEEEEeecCCCCceEEEEeCCCCcee-eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC
Q 002264 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIK-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
|-++.|+++.. +|.|.+||+++|+.. .....|.. .|+.+.++++..++++++.|.+-++||..+-+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999985 999999999998554 44455555 8999999999999999999999999999999999988764
Q ss_pred CCCCCccEEEEcCCCCEEEEEEC
Q 002264 627 GGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 627 ~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
. +|++.+++|....++.|+.
T Consensus 232 ~---PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 232 R---PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred c---cccceecccccceEEecCC
Confidence 3 8999999997777777654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=210.43 Aligned_cols=311 Identities=18% Similarity=0.217 Sum_probs=239.8
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
...+.++..+..|.+++|+|.|. |.|+|+...+.+|-....-..+.... ...........+.-+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEEe
Confidence 34566777888999999999999 79999999999998654322211000 00000011112335678999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCC--cccccceeeccccccEEEEEEecC---CCeeEEEEEe-CCCcEEEEe-CCCceE
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG-DDKLIKVWE-LSGRKL 487 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~~---~~~~~l~s~s-~d~~i~vwd-~~~~~~ 487 (945)
||+|.+||+|+.|.+|++...+.. .....-..+.-|.+.|..++|..+ +.. +|++++ .|..|++-| ..|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 999999999999999999866532 223333367789999999999754 232 566655 466777778 899999
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-------CCCeEEEEEEcCCCCEEEEEeecC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-------PGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+.+.+|.+.|.++- ++ ++..+++|+.|.+|++||++-...+..+.. ....|.+++..|.|+.|+++..
T Consensus 177 ~a~sghtghilaly-sw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALY-SW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEE-Ee--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 99999999998873 23 568999999999999999998777765532 2247899999999999999875
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC--eeEEEeecCCCCCCccEEEEc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s 638 (945)
|....+||++.++.++.|..|.. .+.++.|+|...++++++.|..|++-|+... ..+..+....|...+..+.|+
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 88899999999999999999887 8999999999999999999999999998642 112222222344578899999
Q ss_pred CCCCEEEEEECCCcEEEEECC
Q 002264 639 KEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~ 659 (945)
|..--+++.+.|.++.+|.+.
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 998889999999999999763
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=227.00 Aligned_cols=273 Identities=18% Similarity=0.286 Sum_probs=221.0
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+.|.+++|||...++++.||-||+|++|+++...... .+....|.++|.+++|+.||..+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----------------~ka~~~~~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----------------PKAQQSHDGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------chhhhccCCCeEEEEEccCCceEEe
Confidence 45899999999766688899999999999998742221 1335679999999999999999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+.+|+|||.|++|+.|| ....++.++. ....++++..
T Consensus 90 g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv 164 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV 164 (347)
T ss_pred eccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc
Confidence 999999999999998543 467899999999999877666899999999999999 7777777765 5667888765
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--ceee
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-AP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKR 578 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~ 578 (945)
-. .+++.+..++.|.+|+++.+...+... .+ .-.+++++..+|....+.++. +|.+.+..+..+ +.-.
T Consensus 165 ~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 165 LY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred cC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCce
Confidence 32 578899999999999997765544322 22 237889999998888888886 888888877766 4455
Q ss_pred EeccccC--------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 579 TYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 579 ~~~~~~~--------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
+|+.|.. ..|+.++|+|....|+++|.||++.+||-.....+...+.+. .+|++.+|+.+|.++|.+.
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 6666663 236779999999999999999999999988877777665554 4999999999999988663
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=220.13 Aligned_cols=275 Identities=15% Similarity=0.216 Sum_probs=236.4
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~ 419 (945)
.+|.+.|.+++|+-+|.+ ||+|+.|+++.+|++...+.... ....+|.+.|..++|+| ...
T Consensus 17 ~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred hhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCc
Confidence 358889999999999996 99999999999999988755432 34678999999999998 577
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
.+++++.|.+|++||+..+++.... . .++.=.-+.|+|+|+ +++.++.|..|...| .+.+.+.... ....+.
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~n 151 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVN 151 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceee
Confidence 8999999999999999999877632 2 233345688999999 899999999999999 6655554443 556688
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
-++|+. ++.+++.....|+|.|.....-+.+..+..|.....|+.|+|+|+++++++. |..+-+||+..--+.+
T Consensus 152 e~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 152 EISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICER 225 (313)
T ss_pred eeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhe
Confidence 888874 3467777777899999999998999999999999999999999999999997 8999999999988888
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+..+.- +|..+.|+.+|++|+++++|..|-|=++.+|..+..++..+ +...|+|+|...+||.+++|
T Consensus 226 ~isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 226 CISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 8887765 89999999999999999999999999999999999887654 67999999999999988875
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=228.04 Aligned_cols=286 Identities=16% Similarity=0.269 Sum_probs=242.4
Q ss_pred eEEecCCCCeEEEEEEcC---CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC
Q 002264 531 RVDYDAPGHWCTTMLYSA---DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (945)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 607 (945)
.....+|..+|..++|+| +|-+|++++. |+.-.+-+-.+|..+.+|.+|.+ .++..+++.+-..-++++.|=
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccc
Confidence 345567788999999985 8888998874 77777778889999999999988 888888888877888899999
Q ss_pred cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
+-++||.-+|..+..+.. .| -|.+++|+.|.++|++|+.+..+||||++........
T Consensus 82 takvw~a~tgdelhsf~h-kh--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E-------------------- 138 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEH-KH--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE-------------------- 138 (334)
T ss_pred hhhhhhhhhhhhhhhhhh-hh--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchh--------------------
Confidence 999999999999988864 34 7899999999999999999999999998754221111
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
+ .+|.+.|
T Consensus 139 ---------------------------------------------------------------------~---~ghtg~I 146 (334)
T KOG0278|consen 139 ---------------------------------------------------------------------I---SGHTGGI 146 (334)
T ss_pred ---------------------------------------------------------------------h---cCCCCcc
Confidence 1 1277888
Q ss_pred EEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEE
Q 002264 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la 847 (945)
..+.|....+.+++.+.|++||+||.. +|..+.... ...+|+++.+++||++|.
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~r----------------------Tgt~v~sL~----~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHR----------------------TGTEVQSLE----FNSPVTSLEVSQDGRILT 200 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEec----------------------cCcEEEEEe----cCCCCcceeeccCCCEEE
Confidence 999999989999999999999999753 333332211 467899999999999999
Q ss_pred ecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe-cCCCcceeEEEecCC
Q 002264 848 SATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFSTS 926 (945)
Q Consensus 848 ~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d 926 (945)
++..+.|.+||..+..+++.++. ...|.+..++| +..+++.|++|..++.||..+|+.+..+ ++|.++|.+|.|+||
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred EecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence 99899999999999999988874 45689999999 7789999999999999999999998886 899999999999999
Q ss_pred cceeeeecCCceEEEEec
Q 002264 927 LNILVSSGADAQVTLCVE 944 (945)
Q Consensus 927 g~~l~s~~~Dg~i~vWdl 944 (945)
|...++||.||+|+||-.
T Consensus 279 GE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceeeccCCCceEEEEEe
Confidence 999999999999999963
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=262.56 Aligned_cols=292 Identities=17% Similarity=0.276 Sum_probs=250.9
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
.|.....++.....-+|...+.|..|. +| .+++|+.|++|++||..++..+. ..+.||.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~------------------~~l~GH~ 249 (537)
T KOG0274|consen 191 NWRKLFRRGYKVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLIL------------------TRLVGHF 249 (537)
T ss_pred cccccccccceeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEE------------------eeccCCC
Confidence 344433333333444578899999999 44 38999999999999999887763 2278999
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
+.|.++++..-+.+|++|+.|.++++||..+|++.. ++.+|.+.|.++...+. ++++|+.|.+|++|+ .++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcc
Confidence 999999999888999999999999999999999888 78899999999988654 789999999999999 8899
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.+..+.+|.++|.++..+ +.++++|+.|++|++||+.+++....+.+|...|.++.+.+. ..+++++. |+.
T Consensus 323 ~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~ 393 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTT 393 (537)
T ss_pred eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccc
Confidence 999999999999999874 469999999999999999999999999999999999988765 88999987 899
Q ss_pred EEEEeCCCC-ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 566 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
|++||+.+. +++.++.+|.. .+..+. ..++++++++.||.|++||..+++++..+... +...|..+++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceE
Confidence 999999999 99999999877 454443 45789999999999999999999999999875 33467777775 4678
Q ss_pred EEEECCCcEEEEECCCC
Q 002264 645 AVTTADNGFKILANAIG 661 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~ 661 (945)
++++.||.+++||+.++
T Consensus 468 l~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EEEecCCeeEEEecccC
Confidence 89999999999999988
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=261.40 Aligned_cols=300 Identities=16% Similarity=0.206 Sum_probs=217.8
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC---CC
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~---~g 418 (945)
.|.+.|+|+.||+||+| ||+|+.||.|+||.+...+....... +.. ..+. .+.+ .+.+.-+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~---~~~---~~~~--~~~~-~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEG---DSS---CMYF--EYNA-NSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhccccc---ccc---hhhh--hhhh-ccccCccccccccccc
Confidence 59999999999999995 99999999999999876443210000 000 0000 0000 00011111111 11
Q ss_pred C--EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 419 N--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 419 ~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
+ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|+|+|.|++|++|+ ....++..|. |..
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11122222222221111111123444788999999999999876 799999999999999 7888888887 999
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|+|++|+|..| +++++|+-||.||||++...+...-...+ .-|++++|.|||++.++|+. +|.+++|+....+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 999999999855 89999999999999999876655544444 67999999999999999998 9999999998877
Q ss_pred eeeEeccc-------cCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 576 IKRTYAGF-------RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 576 ~~~~~~~~-------~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
+...+.-+ ....|+.+.|.|.. ..+++.+.|..|+|||.++..++..+.+......-....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 66554321 11258889888754 46889999999999999999999888876655555778999999999999
Q ss_pred ECCCcEEEEECCCC
Q 002264 648 TADNGFKILANAIG 661 (945)
Q Consensus 648 ~~dg~i~iw~~~~~ 661 (945)
++|..|++|+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=242.50 Aligned_cols=301 Identities=19% Similarity=0.272 Sum_probs=231.5
Q ss_pred CcceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 334 PRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 334 ~~~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
|......+ +|+..|.++++.|.|.+ +++||.|.+|++||+.....-. ..|+ .+.......|.++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~-~~fr-------------~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASM-RSFR-------------QLQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccc-hhhh-------------ccCccccccccee
Confidence 34444444 47889999999999997 9999999999999997654322 1122 2233445689999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcc---------cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSND---------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~---------~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
+||+.|..|++.+.....+|+|-++-+. ++.+..-+||...++|.+|.|+.+. .|+|++.||++++|| .
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 9999999999988888999999765332 3333456799999999999999887 899999999999999 3
Q ss_pred CC-ceEEEec-----CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---EEecCCCC--eEEEEEEcCCCC
Q 002264 483 SG-RKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGH--WCTTMLYSADGS 551 (945)
Q Consensus 483 ~~-~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~--~i~~~~~s~~~~ 551 (945)
.. +.+..++ +..-++++++|++ +|.+|++|+.||.|.+|+....... ..-..|.. .|+|++||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 32 2333332 3345788888876 6789999999999999997543322 22234443 899999999999
Q ss_pred EEEEEeecCCCCceEEEEeCCCCc-eeeEeccccC-cceEEEEEcCCCCEEEEEE------CCCcEEEEECCCCeeEEEe
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 623 (945)
+|++-+. |+.+++||++..+ ++....+... ..-+.++|+|+.+.|++|. ..|.+++||..+.+.+..+
T Consensus 378 ~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 9999886 9999999999754 4444443322 2345689999999999986 4578999999999999988
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
..... .|..+.|+|.-+.|.+|+.||+++++=-
T Consensus 454 ~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 454 DISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred cCCCc--eEEEEeecchhhheeeecCCCceEEEEC
Confidence 87643 7899999999889999999999998743
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-27 Score=255.94 Aligned_cols=287 Identities=13% Similarity=0.104 Sum_probs=222.7
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~l 421 (945)
|-..|....+++++.. +++++.+..+..|+...+..+.. .............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 3456777788888774 67777788888898765543210 0001111111234789999999999999 89999
Q ss_pred EEEECCCcEEEEEccCCcc----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 422 GVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|++|| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1233467899999999999998643 899999999999999 888888999999999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC-eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
|.+++|++ +|.+|++++.|++|++||++++.....+..|.+ ....+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999987 568999999999999999999888888777765 345778999998998887655568899999998754
Q ss_pred -eeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 576 -IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 576 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+......+....+....|+++++.+++++ .||.|++||+.+++.+...... ...++..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccc
Confidence 33333333333466678999999999988 5999999999999887766543 3346788999885
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=221.46 Aligned_cols=283 Identities=18% Similarity=0.241 Sum_probs=225.1
Q ss_pred EEEEEeCC--CCeEEEEE-----eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CC
Q 002264 348 ISMDFHPS--HQTLLLVG-----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GN 419 (945)
Q Consensus 348 ~~v~fsp~--g~~llasg-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~ 419 (945)
.++.|||- ++..+|++ ...|++.|-++..++-+.. +. --.-.+.+..++||++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 57888884 33222332 1257899999864443321 11 1123568999999995 56
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
.+++++.||++++||... .-.++..++.|...|.++.|++-.+. .++++|.|++|++|+ ..++.+.++.+|...|+
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788899999999999543 33444578899999999999997766 788889999999999 88889999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCE-EEEEeecCCCCceEEEEeCCCC-ce
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEG-TI 576 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~~d~~~~i~iwd~~~~-~~ 576 (945)
...|+|. ..+.+++++.|+++++||++.......+..|...|.++.|+.-... +++++ .|+.|+.||++.- .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcccc
Confidence 9999997 4589999999999999999998888889999999999999985555 45555 3999999999875 46
Q ss_pred eeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCC-eeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcE
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i 653 (945)
+..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...| ..-+..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 777777765 89999999965 67888999999999998854 344555544 34788999998 78899999999999
Q ss_pred EEEEC
Q 002264 654 KILAN 658 (945)
Q Consensus 654 ~iw~~ 658 (945)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99985
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=231.98 Aligned_cols=260 Identities=15% Similarity=0.240 Sum_probs=220.9
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccc-----eeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~-----~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
+....+.|..|||||+||++|+.||.|.+||..+|+..+.. ..+.-+..+|.|+.|+.|.. .+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 45677899999999999999999999999999998754322 13445788999999999999 899999999999
Q ss_pred EEe-CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEE
Q 002264 479 VWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 479 vwd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
+|. .+|.+++.|. .|...|+|+.|+. |+..+++++.|.++++.-+.+++....+.+|...|+...|++||..++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999 9999999997 8999999999976 55789999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeeEEEeecC-CCCCCcc
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLP 633 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~ 633 (945)
+. |++|++|+.++.+++.+|.... +..+..+-.-| +...++++...++|++.++ .|+.++.+... ...+...
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceE
Confidence 97 9999999999999998887543 33466665555 4578999999999999998 46667766432 2334567
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCcc
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPF 673 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 673 (945)
+.+.+|.|.++.+.+.|+.++.|...+| .+.+++.-|..
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEk 480 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEK 480 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecccc
Confidence 8889999999999999999999999988 55555555444
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=229.27 Aligned_cols=283 Identities=19% Similarity=0.319 Sum_probs=235.5
Q ss_pred cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCC-ccEEEEEEcCCeEEEEEccC
Q 002264 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 449 ~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 527 (945)
-|...|.++... ++ .++||+.||.+++||..|+....+.+|.++|.+++|.-.+. ...+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 488899999887 45 89999999999999999999999999999999888765432 24699999999999998877
Q ss_pred CCeeE----EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-------------------------CCceee
Q 002264 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (945)
Q Consensus 528 ~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-------------------------~~~~~~ 578 (945)
+.... .-.+|...|.++...++|.++++++. |.+|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 65443 23478889999999999999999998 9999999922 123566
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
++.+|.. .|..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++++.++|..++|++|+.|..|++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7788887 899999988 6789999999999999999999988886643 6899999999999999999999999999
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
+++.. +
T Consensus 330 R~~~g--------------------------s------------------------------------------------ 335 (423)
T KOG0313|consen 330 RTGDG--------------------------S------------------------------------------------ 335 (423)
T ss_pred CCCCC--------------------------c------------------------------------------------
Confidence 76510 0
Q ss_pred cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCc
Q 002264 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (945)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (945)
+...
T Consensus 336 ----------------------------~v~~------------------------------------------------ 339 (423)
T KOG0313|consen 336 ----------------------------VVSQ------------------------------------------------ 339 (423)
T ss_pred ----------------------------eeEE------------------------------------------------
Confidence 0000
Q ss_pred ccccccccCCCcCCceeEEeecCCCc-eEEecC-CCeEEEEeccCce-EEEEecCCCCCeeEEEeecCCCceEEEeecCc
Q 002264 819 LLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (945)
Q Consensus 819 ~~~~~~l~~~~~~~~i~~l~~s~dg~-~la~~s-d~~i~iwd~~~~~-~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg 895 (945)
.+.+ |...|.++.|+|... .|++|+ |+++++||+++.+ ++..+.+|...|.++.|.. +..|++|+.|+
T Consensus 340 -----s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~ 410 (423)
T KOG0313|consen 340 -----SLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADN 410 (423)
T ss_pred -----eeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcc
Confidence 0222 778888888888554 567777 9999999999877 8999999999999999985 66999999999
Q ss_pred eEEEEecc
Q 002264 896 TIHIYNVR 903 (945)
Q Consensus 896 ~v~vwd~~ 903 (945)
+|+|+.-.
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998743
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=248.83 Aligned_cols=278 Identities=15% Similarity=0.233 Sum_probs=235.9
Q ss_pred EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC
Q 002264 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~ 426 (945)
..-+.||..+ +||+|. ...|++|+..+++... +..-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~-------------------l~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTE-------------------LCSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEE-------------------eEecCCCceEEEEECCCCCEEEEeec
Confidence 4457788554 588875 5689999999887542 12234789999999999999999999
Q ss_pred CCcEEEEEccCCcccccceeecc-ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE-EecCCCCCEEEEEee
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVYSICPH 503 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~-~~~~~~~~v~~~~~~ 503 (945)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+| ...+... .+.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999998877766 5666 99999999998 44 789999999999999 5554443 488999999999997
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC-CCEEEEEeecCCCCceEEEEeCCCCceeeEecc
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
+ ++.++++|+.|+.+.|||.........+..|...|..++|+|- ...|++++. ..|+.|++||..++..+.....
T Consensus 311 ~--d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 P--DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred C--CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 7 6689999999999999999888999999999999999999994 456666653 4689999999999999888765
Q ss_pred ccCcceEEEEEcCCCCEEEEE--ECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 583 FRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.. .|+.+.|++..+.|+++ ..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 43 69999999998777774 3678999999999998888887755 899999999999999999999999999865
Q ss_pred C
Q 002264 661 G 661 (945)
Q Consensus 661 ~ 661 (945)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 3
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-26 Score=217.57 Aligned_cols=281 Identities=15% Similarity=0.230 Sum_probs=231.0
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
..+.|+++.|+++|.. |++++.|.+++|||..+++++.. +..+...|..+.|-.....++
T Consensus 13 ~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 4679999999999995 77788899999999999987743 555677888999988877777
Q ss_pred EEEC--CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEE
Q 002264 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 423 s~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~ 499 (945)
.++. |.+|+..++.+.+.++ .+.||...|.+++.+|-+. .|+|++.|++|++|| ...++...+.....++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7766 8899999999998887 7889999999999999998 899999999999999 6566666655444444
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCC---CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
++|.| .|-+++++.....|++||++... +...+... ....+.+.|||||++++.++. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45545 66788888877799999998752 22333333 457899999999999998875 888999999999
Q ss_pred ceeeEeccccCcc--eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCc
Q 002264 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 575 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
..+.++.++.... ....+|+|+++++++|+.||+|.+|+++++..+..+.+. +..++.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999988776532 245789999999999999999999999999999999875 345899999999877777664 56
Q ss_pred EEEEECC
Q 002264 653 FKILANA 659 (945)
Q Consensus 653 i~iw~~~ 659 (945)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 8888664
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=224.34 Aligned_cols=253 Identities=18% Similarity=0.257 Sum_probs=200.1
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccC------------Cc---ccccceeeccccccEEEEEEecCCCe
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SN---DLRQHSQIDAHVGAVNDLAFAYPNKL 465 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~------------~~---~~~~~~~~~~h~~~v~~l~~s~~~~~ 465 (945)
.+..|..++.+.+|||||.++|+|+.|..|+|.|++. |. .-..+.++..|..+|+++.|.|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 3677999999999999999999999999999999861 11 1112346778999999999999999
Q ss_pred eEEEEEeCCCcEEEEe-CCCceE--EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec---CCCC
Q 002264 466 LCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGH 539 (945)
Q Consensus 466 ~~l~s~s~d~~i~vwd-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~ 539 (945)
+|++|+.|++|++|| ...... .+......+|.++.|+|+ |.+|+.|....++++||+++.++...-. .|..
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999 332222 222234568999999995 4799999999999999999988776543 3556
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc-ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
.|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|++..|..+++++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 8999999999999999985 99999999999999988864 455568999999999999999999999999999999
Q ss_pred eEEEeecCCCCCC---ccEEEEcCCCCEEEEEEC-CCcEEEEECCCC
Q 002264 619 ILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTA-DNGFKILANAIG 661 (945)
Q Consensus 619 ~~~~~~~~~~~~~---v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~ 661 (945)
++..+.+-+..+. -+...|+....+++.-.+ .+.+.-||.+++
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9998876532211 233455555555554433 345666666554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-27 Score=215.64 Aligned_cols=281 Identities=16% Similarity=0.176 Sum_probs=234.2
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+.+.+|...|.+++|+.+|..||+|+.|+++.+|+++...... -....+|.+.|..++|.|.... .|++++.|++|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEE
Confidence 4477899999999999999999999999999999998874433 2357799999999999998776 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| ..+++........+.+. ++|+| +|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 92 wd~r~~k~~~~i~~~~eni~-i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~- 166 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENIN-ITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN- 166 (313)
T ss_pred EEeccCcEEEEeeccCcceE-EEEcC--CCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec-
Confidence 99 99999988876655554 45655 668999999999999999987666554333 23577888987777766554
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|.|.|.|.....-+++..+..|.. ...|+.|+|+|++|++|+.|-.+.+||++..-+++.+....- +|..+.|+
T Consensus 167 ---GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 ---GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred ---CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 489999999999999999999986 677899999999999999999999999999888888876554 89999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
.||++||++++|..|-|=++++|.++-+.. ..++...|+|+|...+||.+.....
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~-------~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIP-------CEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEee-------ccCCceeEEecCCCceeeEEecCCC
Confidence 999999999999999999999995443322 2356788999999999887665443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=230.63 Aligned_cols=294 Identities=16% Similarity=0.222 Sum_probs=233.1
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccc----cccCcccccccccCCCccEEEEEEcC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM----AACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
-.|.-+|+||+++|++++ .++++.+|+|.=|++.+|+.... +|.- +....+.+... .+|...|.+++.|+
T Consensus 139 ~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred ccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 348889999999999996 99999999999999999875411 1110 00112222222 48999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... .+++++.|++|++|+ .....+.++.+|.+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 99999999999999999999998777 6889999999999987666 789999999999999 77778889999999
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|.+|.... -++.+-+|+.|+++++|++ ..+....+.++.+.+-|++|-.+ ..+++++. +|.|.+|++...+
T Consensus 288 ~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKk 359 (479)
T KOG0299|consen 288 GVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKK 359 (479)
T ss_pred ceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccC
Confidence 999998654 3356666779999999999 34555567777888999999655 46777775 9999999999988
Q ss_pred eeeEeccccC-----------cceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eeEEEeecCCCCCCccEEEEcCC
Q 002264 576 IKRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 576 ~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
++.+....+. ..+++++..|..+++++|+.+|.|++|-+..+ .++..+.. .+.|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccC
Confidence 8876653221 14778999999999999999999999999887 34555543 347999999999
Q ss_pred CCEEEEE-ECCCcEEEE
Q 002264 641 GNLLAVT-TADNGFKIL 656 (945)
Q Consensus 641 g~~l~~~-~~dg~i~iw 656 (945)
|+.+++| +....+-=|
T Consensus 437 gk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 437 GKRIVAGIGKEHRLGRW 453 (479)
T ss_pred CCEEEEeccccccccee
Confidence 9966665 333344334
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=244.24 Aligned_cols=352 Identities=20% Similarity=0.278 Sum_probs=263.5
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg 428 (945)
++..++.+.+.|+||+.||.|++|++.......+.++ ...++.|...|+.++...+|+.|++++.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-------------~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-------------IASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccch-------------hhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 4555544443599999999999999876543221111 123677999999999999999999999999
Q ss_pred cEEEEEccCCcccccceeeccccccEEEEEE-ecCCCeeEEEEEeCCCcEEEEe-CCC--ceEE--------Eec-CCCC
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKLF--------NFE-GHEA 495 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~~~~~~~l~s~s~d~~i~vwd-~~~--~~~~--------~~~-~~~~ 495 (945)
+|++|+...+. ...+.++..|...|.|+++ .++.. .+||||-|+.|.+|| ..+ +.+. .+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998774 2233378889999999999 66666 899999999999999 655 2222 233 7888
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|++++-++ .|..+++|+.++.+++||.++...+..+.+|...|..+..++||+.++++++ |++|++||+...+
T Consensus 173 siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 999999765 5589999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEE
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~i 655 (945)
++.++..|.. .++++..+|+-.++++|+.||.|+.=|+++......+-...+ +|..+..+...+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCceeeecccccee
Confidence 9999999988 699999999999999999999999999998543333333333 7888888865555577888999999
Q ss_pred EECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCC----CCccCCCCCccc
Q 002264 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD----PTSRSMDKPRTV 731 (945)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~ 731 (945)
|...-.. ++++.|................. -.+..++.|+. ....-+.+.+++
T Consensus 324 W~~~~~~---------------------~l~~s~~~~~~~T~~~~~~~~~~--~tp~~vi~Gg~ai~k~~mL~dkRhVlT 380 (735)
T KOG0308|consen 324 WKLEPDI---------------------ALSVSGDLDFFSTDSNNHSCDLT--NTPDSVIPGGAAIKKHAMLNDKRHVLT 380 (735)
T ss_pred cCCcccc---------------------ccccCCCCCcccccCCCcccccc--CCCceeccCchhhhhhhhhcCcceEee
Confidence 9775331 11111111111000000000000 01122222222 234457778899
Q ss_pred cCCCCCCcccccceeec
Q 002264 732 DDVTDKPKPWQLAEIVD 748 (945)
Q Consensus 732 ~~~d~~i~vw~~~~~~~ 748 (945)
-...|.+.+||+-....
T Consensus 381 kDa~gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 381 KDAKGNVALWDILACVK 397 (735)
T ss_pred ecCCCCEEEEEeeeeee
Confidence 99999999999876443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=211.44 Aligned_cols=275 Identities=14% Similarity=0.209 Sum_probs=225.1
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC--CCcEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIK 478 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~--d~~i~ 478 (945)
.+..-.+.|.++.|+++|.+|++++.|.++++||..+|+.++ ++..+.-.|..++|..... .++.++. |.+|+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIR 83 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceE
Confidence 355567899999999999999999999999999999998877 6666778899999998887 4555554 88999
Q ss_pred EEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.-+ .+++.++-|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....+ .++|.|+|-.++++.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN 159 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec
Confidence 999 8999999999999999999999865 68999999999999999988887777666554 468999999998886
Q ss_pred ecCCCCceEEEEeCCCC--ceeeEeccc--cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc-
Q 002264 558 TSKDGDSFLVEWNESEG--TIKRTYAGF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL- 632 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v- 632 (945)
. ...|++||++.. .+..++.-. .....+.+.|+|+|+.++.++..+.+++.|.-+|..+..+..+.....+
T Consensus 160 ~----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 160 G----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred C----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 3 459999999864 344444322 2335788999999999999999999999999999999988876544322
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
...+|+||++++++|+.||+|.+|+++++.+ +..+.+. ..+++.++.|+|.-..++
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~-v~~~~~~----~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKK-VAVLRGP----NGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcE-eeEecCC----CCCCccccccCCceeeee
Confidence 4788999999999999999999999999943 4444442 334677777888766554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=229.79 Aligned_cols=241 Identities=17% Similarity=0.269 Sum_probs=200.5
Q ss_pred ccCCCccEEEEEEcCCC-CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g-~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
+.||.+.|.|++=+|.. ..+|+|+.||.|++||+...++.. ++.+|.+.|..+++.. . .++++|.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 57899999999999987 889999999999999999987777 7889999999999987 3 68999999999999
Q ss_pred eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 481 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
...+.+++++.+ .+.+..+.-+.. +..++++|. .|.|||.....++..+......|.++.|+|-...++.++.
T Consensus 135 k~~~~p~~tilg-~s~~~gIdh~~~--~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILG-KSVYLGIDHHRK--NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeec-cccccccccccc--cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 977777777764 345666665443 356777765 5889999998999999888889999999998776665543
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe-eEEEeecCCCCCCccEEEEcC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp 639 (945)
.|+.|.+||++++.+++.+.... ..+.++|+|.+-.|++|++|..++.||++..+ ++.....| .+.|.++.|||
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhccc--ceeEEEeccCC
Confidence 38999999999999888765432 35679999988888889999999999998743 45555544 45899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 002264 640 EGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999998765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=223.98 Aligned_cols=283 Identities=17% Similarity=0.202 Sum_probs=244.7
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|+++...|... .+.+|+.|..+.++|..+++.+ .+++||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l-------------------~~~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQIL-------------------ATLKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhh-------------------hhccCcceEEEEEEeccchhheeec
Confidence 3788888888855 5899999999999999988876 3489999999999999999999999
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC--CCCCEEEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSIC 501 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~--~~~~v~~~~ 501 (945)
+.|..|+||......+.. ....|.++|+.+...|.|. ||++++.|++..+.| .+|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999988766544 5668999999999999999 999999999999999 88888766553 234589999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
|+| ||.++.+|..||.|++||+........+.+|.++|..++|+.+|.+|++++. |+.|++||++.-+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 998 6789999999999999999999999999999999999999999999999985 7889999999988888888
Q ss_pred cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
......+..+.|.+.|.+++.++.|=.|++++-.+.+.......+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77766789999999999999999887888887655544333333444457899999999999999999998888754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=240.31 Aligned_cols=259 Identities=18% Similarity=0.311 Sum_probs=222.7
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccC-C
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-V 405 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h 405 (945)
+|+....+-..+..++ ...|+++.|+++|.+ ||+|..+|.|.|||..+.+.+.. +.+ |
T Consensus 201 lW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h 259 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFG-EELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSH 259 (484)
T ss_pred EEecCCCceEEeEecC-CCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCc
Confidence 7776664433333333 899999999999995 99999999999999988766532 455 9
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|+.+.||| ...
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCc
Confidence 9999999998 77899999999999999998776553 4789999999999999999 899999999999999 788
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEE--cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.++..+..|...|..++|+|... .+||+|+ .|+.|++||..++..+.... .+..|.++.|++..+.|+++.. ..
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~s 409 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--YS 409 (484)
T ss_pred cccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--CC
Confidence 88999999999999999999865 5788875 69999999999877766554 4557999999999988887653 34
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
++.|.+|+..+.+.+..+.+|.. .|..++++|+|..+++|+.|.++++|++-+.
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 67899999999999999999998 7999999999999999999999999998764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=242.73 Aligned_cols=241 Identities=17% Similarity=0.238 Sum_probs=206.4
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEEccCCccc---ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-
Q 002264 411 RVAWS-PDGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG- 484 (945)
Q Consensus 411 ~i~~s-~~g~~las~~~dg~i~vwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~- 484 (945)
.+..+ |+++||.+||.||.|++|++...... .....++.|...|.+++...+++ .|+|+|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 36788999999999999998654321 12346788999999999999999 799999999999999 554
Q ss_pred -ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe--eE--------Eec-CCCCeEEEEEEcCCCCE
Q 002264 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RV--------DYD-APGHWCTTMLYSADGSR 552 (945)
Q Consensus 485 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~~~~~ 552 (945)
-++.++..|.+.|.|+++.. .+...+++||-|+.|.+||++++.. .. .+. ++...|.+++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 57788999999999999843 3558999999999999999997633 11 122 55668999999999988
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
+++++. ++.+++||.++++.+..+.+|.. .|.++..+++|..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888886 88899999999999999999998 899999999999999999999999999999999999988765 69
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998888764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=231.67 Aligned_cols=275 Identities=20% Similarity=0.274 Sum_probs=228.8
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.+-.++|+++.|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 366799999999999999999999999999999998765 334447888899999999999999 78899999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
+ .+.+...++.+|.+.|+++.|.-.. ..+++|+.|.+|++||+....+..++ .....+..+..+ ...++++..
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S~cnDI~~~--~~~~~SgH~- 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTV-LPGSQCNDIVCS--ISDVISGHF- 320 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccc-cccccccceEec--ceeeeeccc-
Confidence 9 8888999999999999999986543 34999999999999999886655543 233445556555 445666665
Q ss_pred CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC--CCCCccEEEE
Q 002264 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--GLPNLPRLRF 637 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~v~~ 637 (945)
|+.|++||.++..+......+. .++++..++++..+.+++.|.++.+.|+++.+....+...+ .....+.+.|
T Consensus 321 ---DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 321 ---DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ---ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 8889999999999999888765 69999999999999999999999999999999888876543 2235789999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
||++.|+++|+.||.|+||++.++ .+.+.+...... ..|.+++|+|.|..++
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~---~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTSN---AAITSLSWNPSGSGLL 447 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCCC---cceEEEEEcCCCchhh
Confidence 999999999999999999999988 455555443321 2589999999888774
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=244.57 Aligned_cols=271 Identities=15% Similarity=0.195 Sum_probs=208.6
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccc----------ccceeeccccccEEEEEEec-CCCeeEEEEEeC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGD 473 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~ 473 (945)
|-..|.....++|+..+++++.+.....|+..++..+ .....+.+|.+.|.+++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3455666677777777777777777777765443221 11224779999999999999 777 8999999
Q ss_pred CCcEEEEe-CCC-------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 474 DKLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 474 d~~i~vwd-~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
|++|++|| .++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999999 443 3567889999999999999863 36899999999999999999888888888888999999
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCe-eE
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVN-IL 620 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 620 (945)
|+|+|..|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999985 999999999999999988888764555678888888888765 47899999998754 33
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeeccc
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~ 688 (945)
.....+. ...+....|+++++++++++ .|+.|++||+.++. ........ ...++..++|.|.
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~~~~~~~~----s~~~~~g~~~~pk 314 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-LTFCSSYS----SVEPHKGLCMMPK 314 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-eEEEeecc----CCCCCcceEeccc
Confidence 3333322 23456678999999999888 49999999998773 32222111 2234556666664
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=228.31 Aligned_cols=284 Identities=14% Similarity=0.188 Sum_probs=232.2
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
+-+|.+.|.|++=+|..-..+|+|+.||.|+|||+.+.++.. .+..|.+.|..|++.. .
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~--~ 120 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ--T 120 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--c
Confidence 357999999999999984469999999999999998877663 3788999999999987 7
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
.+++++.|.+|+.|.++.. .++ ++. ..+.+..+.-+..+. .++|||. .|.||| ....++..+.-....|.
T Consensus 121 ~~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSIS 191 (433)
T ss_pred ceEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCCcee
Confidence 7889999999999998763 333 332 344566777766666 7899875 588999 78889999988888999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC-cee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIK 577 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~ 577 (945)
++.|+|... .+|++++.|+.|.+||++...+........ .-+.++|+|.+-.++++. .|..++.||++.- .++
T Consensus 192 svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m-RTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 192 SVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM-RTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPL 265 (433)
T ss_pred EEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec-cccceecCccccceeecc----ccccceehhhhhhcccc
Confidence 999999754 688888899999999999988776554332 356899999666666665 4899999999864 466
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..+.+|.. .+..+.|+|.|.-|++|+.|.+|+||..+.+.....+... ....|.++.||.|.+++++|++|+.|++|.
T Consensus 266 ~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 266 NVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeee
Confidence 77777776 7899999999999999999999999999887654444332 234689999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
....
T Consensus 344 a~As 347 (433)
T KOG0268|consen 344 AKAS 347 (433)
T ss_pred cchh
Confidence 8654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=227.04 Aligned_cols=283 Identities=20% Similarity=0.238 Sum_probs=235.4
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccc--------------eee-ccccccEEEEEEecCCCee
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------------SQI-DAHVGAVNDLAFAYPNKLL 466 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~~s~~~~~~ 466 (945)
+..|.-+|.+++++|++++.++++.+|+|.-|++.+|+..+.+ ..- .+|...+.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5669999999999999999999999999999999888743111 011 27889999999999999
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
+|++|+.|..|.||+ .+.+.++.+.+|.+.|.+++|.... ..+++++.|++|++|+++....+.++-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 999999999999999 9999999999999999999997543 5799999999999999998888888889999999998
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
...-++.+-+++. |.++++|++.. +....|.++.. .+.|++|-. ..++++|+.+|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888887777765 99999999943 33445666655 788888865 46899999999999999999888876643
Q ss_pred CCC----------CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 626 ~~~----------~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
..+ ...|++++..|...++|+|+.+|.|++|.+.++.+.+..+...+ ..+.|++++|+++|+.++++
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 221 12688999999999999999999999999999865555544433 34569999999999988776
Q ss_pred CCC
Q 002264 696 GTP 698 (945)
Q Consensus 696 ~~~ 698 (945)
.+.
T Consensus 444 iGk 446 (479)
T KOG0299|consen 444 IGK 446 (479)
T ss_pred ccc
Confidence 553
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-25 Score=241.63 Aligned_cols=255 Identities=11% Similarity=0.118 Sum_probs=194.3
Q ss_pred EeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcc-
Q 002264 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (945)
Q Consensus 363 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~- 440 (945)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v-------------------~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV-------------------IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceE-------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 556778888886543322 347899999999999996 79999999999999999986432
Q ss_pred c----ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 441 ~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
. .....+.+|...|.+++|+|++.. ++++++.|++|++|| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122356789999999999999874 568999999999999 7777777765 567899999987 568999999
Q ss_pred cCCeEEEEEccCCCeeEEecCCCCeEE-----EEEEcCCCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccccCc-ce
Q 002264 516 IDGKIKAWLYDTMGSRVDYDAPGHWCT-----TMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKK-SN 588 (945)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~-~~ 588 (945)
.|+.|++||++++.....+..|.+.+. ...|++++.++++++.++..++.|++||++. ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999988888888876433 2345689999999887544456899999995 5566555433321 22
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC
Q 002264 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g 641 (945)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 223334557888899999999999998774 3334433445678899999964
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=209.06 Aligned_cols=249 Identities=15% Similarity=0.279 Sum_probs=204.9
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
....+.-.+.+..++||+.....+++++.||+++|||+..... ++ ..++.|...|.++.|++
T Consensus 53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----Pi--------------~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----PI--------------HKFKEHKREVYSVDWNT 114 (311)
T ss_pred EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----ch--------------hHHHhhhhheEEecccc
Confidence 3445567789999999999887899999999999999543221 11 44788999999999999
Q ss_pred -CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCC
Q 002264 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGH 493 (945)
Q Consensus 417 -~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~ 493 (945)
+++.+++++-|++|++|+..-+..+. ++.+|...|...+|+|.... +|+++|.|+++++|| ..|+.+. +..|
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~ah 189 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IEAH 189 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EEec
Confidence 56678888999999999988776666 78999999999999998766 899999999999999 5566655 8889
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~ 571 (945)
...+.++.|+.. +...+++|+.|+.|++||++.-. ++..+.+|+-.|..+.|||... .|++++. |-++++||.
T Consensus 190 ~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~ 264 (311)
T KOG0277|consen 190 NSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDP 264 (311)
T ss_pred cceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEeccc
Confidence 999999999865 45899999999999999998754 4567788888999999999654 5667775 889999998
Q ss_pred CCCc-eeeEeccccCcceEEEEEcC-CCCEEEEEECCCcEEEEEC
Q 002264 572 SEGT-IKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 572 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~ 614 (945)
..+. .+.+...|.. -+..+.|++ ++.++++++-|+.++||+.
T Consensus 265 ~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 8554 4445554444 677888887 4678999999999999984
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=233.76 Aligned_cols=280 Identities=16% Similarity=0.305 Sum_probs=235.8
Q ss_pred EEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE-EEEc
Q 002264 338 AVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAWS 415 (945)
Q Consensus 338 ~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-i~~s 415 (945)
.+.+ +|...|..+++.+.. .+++||.||++++|+-..++.+. .+.+.+|.+.|.+ +++-
T Consensus 7 s~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~-----------------~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLE-----------------THAFEGPKGFIANSICYA 67 (745)
T ss_pred EEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCccccc-----------------ceecccCcceeeccceec
Confidence 3444 499999999988876 48999999999999976655442 2447778888888 8888
Q ss_pred C-CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCC
Q 002264 416 P-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (945)
Q Consensus 416 ~-~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 494 (945)
+ ++-.|++|+.|++|.+|...+...+. .+.+|...|+++....++. ++|||.|.++++|- .+++...+.+|.
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH~ 140 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGHT 140 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCcc
Confidence 6 55569999999999999999887776 7889999999999877764 89999999999997 345566699999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
..|+.++..|. ..+++|+.|.+|++|. .++...++.+|...|+.+++-+++. +++|+. ||.|++|++ +|
T Consensus 141 asVWAv~~l~e---~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~-~g 209 (745)
T KOG0301|consen 141 ASVWAVASLPE---NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL-DG 209 (745)
T ss_pred hheeeeeecCC---CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-cC
Confidence 99999988764 2799999999999994 4777888999999999999988765 556663 999999999 88
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
+.+..+.+|.. .+.++....++..++++|+|++++||+.. ++.+.+..++. .|+++.+-++|. +++|++||.||
T Consensus 210 e~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~Vr 283 (745)
T KOG0301|consen 210 EVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRVR 283 (745)
T ss_pred ceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceEE
Confidence 99999999988 78889988888999999999999999976 77888877654 789999988886 56788899999
Q ss_pred EEECCC
Q 002264 655 ILANAI 660 (945)
Q Consensus 655 iw~~~~ 660 (945)
||....
T Consensus 284 VfT~~k 289 (745)
T KOG0301|consen 284 VFTVDK 289 (745)
T ss_pred EEEecc
Confidence 998864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-25 Score=206.70 Aligned_cols=304 Identities=13% Similarity=0.198 Sum_probs=219.9
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE----EecCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
..+++|.+.|++++|+. ||+.|++++.|++|++|+++...... ....+.+..+.+.|+||.+-+++... ..
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~---~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK---RG 154 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc---cC
Confidence 46789999999999965 78999999999999999987643221 22223335688999999998877664 36
Q ss_pred ceEEEEeCCC---CceeeE--------eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 564 SFLVEWNESE---GTIKRT--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 564 ~~i~iwd~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
..+++|.+.. |..... |...+.-.+-.+-....+.+|++++.|..|.+|++. |+.+..+..... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cc
Confidence 6788887643 221111 111112123345566678899999999999999998 888888876543 55
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (945)
+..+.||+|+++++++..-.|++|.+- |..||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~-------------------------f~kdG~fq-------------------- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPI-------------------------FTKDGTFQ-------------------- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEE-------------------------eccCcchh--------------------
Confidence 788999999999999998889999762 22333211
Q ss_pred CcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEe
Q 002264 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (945)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~ 792 (945)
...+++. +.+ |.+.|..++|+++..++++++.||++++||
T Consensus 267 -----------------------ev~rvf~--------------LkG---H~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 267 -----------------------EVKRVFS--------------LKG---HQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred -----------------------hhhhhhe--------------ecc---chhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 1122333 333 999999999999999999999999999999
Q ss_pred ecCC-CCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEec-C
Q 002264 793 WHRN-EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S 870 (945)
Q Consensus 793 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~-~ 870 (945)
.+.. ....+.+.+ ..|. ..+.. ..+....+++||.|+.||.+....+++|..++++...+++ .
T Consensus 307 tdVrY~~~qDpk~L----------k~g~---~pl~a--ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 307 TDVRYEAGQDPKIL----------KEGS---APLHA--AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred ccceEecCCCchHh----------hcCC---cchhh--cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 6531 001111111 1111 01111 2334448999999999999988899999999998887776 4
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
|.+.|++++|++ +|+++|+++ |+.+++..
T Consensus 372 h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 889999999999 999999887 77788876
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=223.76 Aligned_cols=301 Identities=16% Similarity=0.240 Sum_probs=232.6
Q ss_pred EEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc----eeeEeccccCcceEEEEEcCCCCEEEEEECCC
Q 002264 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (945)
Q Consensus 532 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 607 (945)
..+..+...|.++++.|.|.++++++. |..|++||..... ..+.+.......+.++.|++.|..|++.+...
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 345566668999999999999999997 8899999987432 22333333444789999999999999999999
Q ss_pred cEEEEECCCCeeEEEeec----------CCCCCCccEEEEcCC-CCEEEEEECCCcEEEEECCCCccccccccCCccccc
Q 002264 608 QIKFWDMDNVNILTSTDA----------EGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (945)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~----------~~~~~~v~~v~~sp~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (945)
..+++|....+......+ .+|...+++.+|+|+ ...+++++.||++|||++...+...+.+........
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999877666554433 356778999999995 567889999999999999887666666666666667
Q ss_pred cCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeee
Q 002264 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (945)
Q Consensus 677 ~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 756 (945)
+-+++..+|++||+.+ ++|..||.|.+|+..+........
T Consensus 317 Rv~~tsC~~nrdg~~i-------------------------------------Aagc~DGSIQ~W~~~~~~v~p~~~--- 356 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLI-------------------------------------AAGCLDGSIQIWDKGSRTVRPVMK--- 356 (641)
T ss_pred ccCceeeecCCCcchh-------------------------------------hhcccCCceeeeecCCcccccceE---
Confidence 7778888888888776 577778999999975433222222
Q ss_pred cCCCCCCcc--ceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCce
Q 002264 757 MPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834 (945)
Q Consensus 757 ~~~~~~~~~--~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 834 (945)
+. .+|.. .|++++||+||++|++-+.|+++++||+...... + ...+| +. ...+-
T Consensus 357 vk--~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp----------L---~~~tg------L~---t~~~~ 412 (641)
T KOG0772|consen 357 VK--DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP----------L---NVRTG------LP---TPFPG 412 (641)
T ss_pred ee--eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc----------h---hhhcC------CC---ccCCC
Confidence 12 22554 8999999999999999999999999998532210 0 00011 11 34556
Q ss_pred eEEeecCCCceEEecC-------CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 835 PCIALSKNDSYVMSAT-------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 835 ~~l~~s~dg~~la~~s-------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
+.++||||.++|++|. .|++.+||..+.+.+.++.-....|..+.|+| .=+.|..|+.||+++||=
T Consensus 413 tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 413 TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEEE
Confidence 7899999999999994 25699999999999999887788899999999 778888899999999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=225.42 Aligned_cols=277 Identities=15% Similarity=0.197 Sum_probs=226.4
Q ss_pred CCCeEEEEEEcCCCCE-EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 537 PGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~-l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
....|.+++|+|...+ +++++ ...+.+|+..+....+++....+ .+.++.|-.||+.+++|...|.|++||+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-----S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-----SVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-----ccEEEEEecchhhhhhhHHhhcc-ceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 3457999999995543 44443 56799999999888887877776 79999999999999999999999999988
Q ss_pred CCeeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceec
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
+...+..+..|.+ +|..+.|+| ++.++++|++|+.+++||+.+.. ..
T Consensus 99 ~r~iLR~~~ah~a--pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~----------------------------- 146 (487)
T KOG0310|consen 99 SRVILRQLYAHQA--PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQ----------------------------- 146 (487)
T ss_pred cHHHHHHHhhccC--ceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EE-----------------------------
Confidence 7777777777655 999999999 56678888889999999997662 11
Q ss_pred cCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEec
Q 002264 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (945)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 774 (945)
..+. +|.+.|.+.+++|
T Consensus 147 ------------------------------------------------------------~~l~---~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 147 ------------------------------------------------------------AELS---GHTDYVRCGDISP 163 (487)
T ss_pred ------------------------------------------------------------EEec---CCcceeEeecccc
Confidence 0111 2888899999988
Q ss_pred CC-CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCe
Q 002264 775 SA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853 (945)
Q Consensus 775 dg-~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~ 853 (945)
.. ..+++|+.||.|++||..... .. .....|..+|..+.+-|.|..+|+++...
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~--------------------~~-----v~elnhg~pVe~vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLT--------------------SR-----VVELNHGCPVESVLALPSGSLIASAGGNS 218 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCC--------------------ce-----eEEecCCCceeeEEEcCCCCEEEEcCCCe
Confidence 64 467888889999999864321 00 11123889999999999999999999999
Q ss_pred EEEEeccCceE-EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeee
Q 002264 854 ISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS 932 (945)
Q Consensus 854 i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s 932 (945)
|+|||+.+|.. +..+..|...|||+++.. ++..|.+|+-|+.|+|||+.+.+.+..+. ..++|.+++.+||++.++.
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEE
Confidence 99999996544 444555999999999999 88999999999999999999999988887 6789999999999999999
Q ss_pred ecCCceEEE
Q 002264 933 SGADAQVTL 941 (945)
Q Consensus 933 ~~~Dg~i~v 941 (945)
|..||.+.+
T Consensus 297 GmsnGlv~~ 305 (487)
T KOG0310|consen 297 GMSNGLVSI 305 (487)
T ss_pred ecccceeee
Confidence 999998754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=240.85 Aligned_cols=255 Identities=13% Similarity=0.192 Sum_probs=187.9
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccce--------eeccccccEEEEEEec---CCCeeEEEEEe
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS--------QIDAHVGAVNDLAFAY---PNKLLCVVTCG 472 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~--------~~~~h~~~v~~l~~s~---~~~~~~l~s~s 472 (945)
.|.+.|.++.||+||+|||+||.||.|+||.+...+....-. .+. -.+.+..+.-++ .+.....-.+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~-~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYN-ANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhh-hccccCcccccccccccccccccccc
Confidence 899999999999999999999999999999987633211000 000 000011111111 01100112222
Q ss_pred CCCcEEEEe----CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC
Q 002264 473 DDKLIKVWE----LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (945)
Q Consensus 473 ~d~~i~vwd----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~ 548 (945)
....+.+-+ ...+++..|.||.+.|.++.|+-+ ++|++++.|.+|++|++....++..+ .|...|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC---CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecc
Confidence 222322222 455778899999999999999743 69999999999999999988887776 5677899999999
Q ss_pred -CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC
Q 002264 549 -DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 549 -~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
|.+++++|+- |+.++||++...+.+.....+ ..|++++|.|+|+..++|+.+|.+++|+....+.........
T Consensus 420 vDDryFiSGSL----D~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 420 VDDRYFISGSL----DGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cCCCcEeeccc----ccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 7889999987 999999999988887776665 379999999999999999999999999999888776654432
Q ss_pred C------CCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccccC
Q 002264 628 G------LPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 628 ~------~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
+ ...|+.+.|.| +...+++.+.|..|||+|.++. .++..+++
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG 542 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKG 542 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcc
Confidence 2 12699999998 3445777889999999999665 44544444
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=245.61 Aligned_cols=257 Identities=19% Similarity=0.332 Sum_probs=220.6
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|+............+|.+.|++++|..-+. +|++|+.|.+++|||..+|++.. ++.+|.
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~-------------------~l~gh~ 291 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTH-------------------SLQGHT 291 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEE-------------------EecCCC
Confidence 5666554444444567999999999998554 79999999999999999999874 488999
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
+.|.++... +.++++|+.|.+|++|++.++..+. .+.+|.++|.++... +. ++++|+.|++|++|| .+++
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhhce
Confidence 999999874 5578889999999999999998777 677799999999998 55 899999999999999 9999
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
++..+.+|...|+++.+... ..+++|+.|++|++||+++. ++...+..|...+..+. ..++.|++++. |+
T Consensus 363 cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a----D~ 433 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA----DG 433 (537)
T ss_pred eeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc----cc
Confidence 99999999999999976432 68999999999999999999 88889988888775554 46788999887 88
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
.|++||..+++.++++.+.+...+..+++. ...+++++.||.+++||++++.+...+
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999998533367777665 468999999999999999999988766
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=206.86 Aligned_cols=278 Identities=16% Similarity=0.179 Sum_probs=215.4
Q ss_pred CCCccEEEEEEcC-CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-
Q 002264 404 DVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (945)
Q Consensus 404 ~h~~~V~~i~~s~-~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd- 481 (945)
..++.|.+++||| ...++++|+-||+||+|+++....... +....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEc
Confidence 4678999999999 556667889999999999987422222 24567999999999999998 889999999999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCC
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 561 (945)
.++ .+..+..|.++|.++.|.+..+-..|++|+.|++|+.||.+....+.++..++. +.++.. -..+++++..
T Consensus 102 ~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv--~~pm~vVata--- 174 (347)
T KOG0647|consen 102 ASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADV--LYPMAVVATA--- 174 (347)
T ss_pred cCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhc--cCceeEEEec---
Confidence 555 667888899999999998876667899999999999999999888888877664 444433 2345555554
Q ss_pred CCceEEEEeCCCCcee-eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe--eEEEeecCCC-------CCC
Q 002264 562 GDSFLVEWNESEGTIK-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGG-------LPN 631 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~-------~~~ 631 (945)
+..|.+|+++.+... +.....-+..+++++..++....+.|+-+|.+.+..++.+. .-..+..|.. .-.
T Consensus 175 -~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 175 -ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred -CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 888999999765432 23333334468889988888888999999999999988863 3333444432 235
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
|++++|+|....|+++|.||++.+||-... ..++..+ .+..+|++-.|+.+|.+++.+.+.
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~-----~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSE-----THPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhh-hhhhccC-----cCCCccceeEecCCCCEEEEEeec
Confidence 789999999999999999999999998765 3333333 344579999999999998865543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=243.26 Aligned_cols=248 Identities=17% Similarity=0.235 Sum_probs=203.2
Q ss_pred cCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEEccCC--------c-ccccceeeccccccEEEEEEecCCCeeEEEEE
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAF--TKHLIQLYSYAGS--------N-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~--~dg~i~vwd~~~~--------~-~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
..+...|.+|..+|||..+|+|+ .||.++||+.+.- . ..+.......|.+.|+|+.|+|||+ +||+|
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAsG 87 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLASG 87 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEeec
Confidence 33567799999999999999999 8999999987521 1 1233345678999999999999999 99999
Q ss_pred eCCCcEEEEeCC--------C-----------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE
Q 002264 472 GDDKLIKVWELS--------G-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (945)
Q Consensus 472 s~d~~i~vwd~~--------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 532 (945)
|.|+.|.+|+.. | +.+..+.+|...|..++|+| ++.++++++.|++|.+|+..+.+...
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEccccceeee
Confidence 999999999933 1 25678899999999999988 66999999999999999999998889
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC-----cceEEEEEcCCCCEEEEEE---
Q 002264 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVG--- 604 (945)
Q Consensus 533 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~--- 604 (945)
.+.+|...|..+.|.|-|+++++-+. |++|++|+..+....+.+.++.. ..+..+.|+|||.+|++..
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsd----Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSD----DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeecccccccceEECCccCeeeeecC----CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 99999999999999999999999986 99999999888777777665543 1356689999999999864
Q ss_pred -CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC-----CC------------EEEEEECCCcEEEEECCC
Q 002264 605 -EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-----GN------------LLAVTTADNGFKILANAI 660 (945)
Q Consensus 605 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~-----g~------------~l~~~~~dg~i~iw~~~~ 660 (945)
.-..+.|.+..+.+.-..+-+|.. ++.++.|+|. .+ .+|+|+.|++|.||....
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred CCcceeEEEecCCceeeeeeecCCC--ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 345688888877777777766654 8999999982 11 566777777777776643
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=205.25 Aligned_cols=267 Identities=18% Similarity=0.268 Sum_probs=211.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+.|..|.|+|.+.. |++++.||++++||+....... .-.|..++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 458999999999986 5556799999999998764331 234889999999986 567889
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
|+.||.|+.+|+.++... .+..|..+|.|+.+++... .+++||.|++|++|| ........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998765 3677999999999998777 899999999999999 5433444443 3447888875
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC----ce
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----TI 576 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~----~~ 576 (945)
.++.|+.|+.|..|.+||+++.......... .-.+.++++.|++.-.++++. +|.+.+=.+... +.
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 3468999999999999999987666533222 237899999998877777775 777776555544 33
Q ss_pred eeEeccccC--------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 577 ~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
...|..|.. .+|++++|+|-...|++||.||.|.+||+.+.+.+..+.... ..|.+++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~--~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE--TSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC--CceEEEEeccCCCeEEEEe
Confidence 445555543 247889999999999999999999999999988888776543 3799999999999999987
Q ss_pred C
Q 002264 649 A 649 (945)
Q Consensus 649 ~ 649 (945)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=205.62 Aligned_cols=244 Identities=18% Similarity=0.240 Sum_probs=205.5
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+..|.++|+++|.+ |.++|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+
T Consensus 37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 3477899999999985 9999999999999999999887766 5667999999999998764226899999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|+ ..-.++..+++|.+.|+.++++|++ ++-++.+.|+.+++||+-.+..-+....... .+.+.|+|.|.+++..+
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~- 187 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG- 187 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe-
Confidence 99 7888999999999999999999964 8899999999999999988877666555433 34599999999888887
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE-
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF- 637 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 637 (945)
...|-+|.+.+......+.... .+.++.|. ++..+++|+.|+.|.+||.++..+...+..|.. .|.++.+
T Consensus 188 ----~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~ 258 (362)
T KOG0294|consen 188 ----RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASY 258 (362)
T ss_pred ----ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEE
Confidence 5679999998877766655432 34445554 467999999999999999999888888887754 8888874
Q ss_pred -cCCCCEEEEEECCCcEEEEECCCC
Q 002264 638 -SKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 638 -sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|++.+|++++.||.|++||+...
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999765
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=210.07 Aligned_cols=290 Identities=12% Similarity=0.177 Sum_probs=237.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.+|.+.||.++-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|++|+|++.+.+
T Consensus 145 ~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh~s~~L 204 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFHNSGLL 204 (481)
T ss_pred cccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEeccccce
Confidence 35999999999987776 899999999999999999999854 8899999999999999999
Q ss_pred EEEEECCCcEEEEEc------cC--------Cc----------------------cc-ccceeeccccccEEEEEEecCC
Q 002264 421 VGVAFTKHLIQLYSY------AG--------SN----------------------DL-RQHSQIDAHVGAVNDLAFAYPN 463 (945)
Q Consensus 421 las~~~dg~i~vwd~------~~--------~~----------------------~~-~~~~~~~~h~~~v~~l~~s~~~ 463 (945)
+++++.|++-.||.. .. ++ .+ .++..+.+|.+.|.++.|...|
T Consensus 205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg 284 (481)
T KOG0300|consen 205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG 284 (481)
T ss_pred EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence 999999999999972 11 00 01 1223578999999999999999
Q ss_pred CeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeE
Q 002264 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWC 541 (945)
Q Consensus 464 ~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i 541 (945)
+ .+++++.|.+..+|| .+|..+..+.||....+.++-+|. .+++++.+.|.+.++||++.. ..+..+.+|...|
T Consensus 285 ~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 285 Q--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV 360 (481)
T ss_pred c--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeecccccce
Confidence 9 899999999999999 999999999999999999998874 489999999999999999743 3445788999999
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
+++.|..+.+ +++++. |.+|++||+++.+ ++.++... ..++.++++..+..++.--.+..|++||++...+.
T Consensus 361 TS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 361 TSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred eEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 9999987654 667664 8999999998754 55566543 35778889888888888888899999999765543
Q ss_pred EEe--ecCCCCCCccEEEEcCCC--CEEEEEECCCcEEEEECCCC
Q 002264 621 TST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~--~~~~~~~~v~~v~~sp~g--~~l~~~~~dg~i~iw~~~~~ 661 (945)
..- ...+|...|.|++|..+. .-|++++.|..+.=|++...
T Consensus 434 RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 434 RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 222 223455579999998753 35788999999999998654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=234.06 Aligned_cols=251 Identities=14% Similarity=0.206 Sum_probs=193.2
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecC-CCeeEEEEEeCCCcEEEEe-CCCc--------eEEEecCC
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~~i~vwd-~~~~--------~~~~~~~~ 493 (945)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +. +|+||+.|++|++|| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 567888999998665433 368899999999999997 56 899999999999999 4432 34567899
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|..|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999998532 456799999999999999988776665 4567999999999999998875 88999999999
Q ss_pred CceeeEeccccCcc----eEEEEEcCCCCEEEEEECCC----cEEEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 574 GTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 574 ~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
++.+..+.+|.+.. +....|++++.++++++.|+ .|++||+++ +.++..+..+.+.+.+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887632 22234568889999988664 799999985 6677666655544344444445579999
Q ss_pred EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccc
Q 002264 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
++|+.|+.|++|++..+. +..+... ....+...++|.|...
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~~~---~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVNEY---KSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeeccc---ccCCCccceEEccccc
Confidence 999999999999997652 2222211 1335677788888643
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=210.18 Aligned_cols=239 Identities=15% Similarity=0.257 Sum_probs=211.9
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
..+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||. ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999887666 7899999999999999998 899999999999999 5566
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
.......|..+|+.+..+|+ |.||++++.||+..+.|++++......... +-.+++.+|+|||-.+.++.. |
T Consensus 295 ~~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred CccccccccccceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 67778889999999999884 579999999999999999998887665543 336899999999999998886 9
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 643 (945)
+.+++||+.++..+..|.+|.. .|..++|+.+|-+++++++|+.|++||++..+..+++...... ++.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 9999999999999999999887 8999999999999999999999999999998888888776644 7999999999999
Q ss_pred EEEEECCCcEEEEEC
Q 002264 644 LAVTTADNGFKILAN 658 (945)
Q Consensus 644 l~~~~~dg~i~iw~~ 658 (945)
|+.++.|=.|++++-
T Consensus 447 L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKK 461 (506)
T ss_pred EEeecceeEEEEEec
Confidence 999987766666553
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=201.36 Aligned_cols=254 Identities=20% Similarity=0.306 Sum_probs=208.2
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec--CCCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~~~l~s~s~d~~i 477 (945)
.+-..|++.|..+...--|+.||||+.|++|+|+.+..+.....+.+|.+|.++|+.++|.. -|. +|++++.||.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkV 82 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKV 82 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceE
Confidence 34567999999999988999999999999999999998776667778999999999999987 677 99999999999
Q ss_pred EEEe-CCCc--eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC---eeEEecCCCCeEEEEEEcCC--
Q 002264 478 KVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSAD-- 549 (945)
Q Consensus 478 ~vwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~-- 549 (945)
.||. ..|+ ....+..|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|-
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999 5553 34567789999999999999889999999999999999987762 12234556678999999986
Q ss_pred -C-----------CEEEEEeecCCCCceEEEEeCCCCc--eeeEeccccCcceEEEEEcCCC----CEEEEEECCCcEEE
Q 002264 550 -G-----------SRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKF 611 (945)
Q Consensus 550 -~-----------~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i 611 (945)
| +.|++++. |..|++|+..+++ ..+++.+|.+ -++.++|.|.- .++++++.||++.|
T Consensus 163 ~g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred CccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 4 56899886 8999999988763 4456888887 89999999964 57999999999999
Q ss_pred EECCCC-eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 612 WDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 612 wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
|..+.. +.-+..-.+.-...+..+.||..|+.|++++.|+.|.+|.-..
T Consensus 238 wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 987632 1111111122234789999999999999999999999997643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=201.40 Aligned_cols=295 Identities=13% Similarity=0.167 Sum_probs=223.6
Q ss_pred CCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE
Q 002264 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
+.|.....++.|.. -.|+.||+.|. +||+|..||.|.|||+.+...- +++.+|..+|+|
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeE
Confidence 34555667777766 89999999998 5999999999999999886633 568899999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-
Q 002264 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF- 490 (945)
Q Consensus 412 i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~- 490 (945)
++||+||+.|++++.|..|.+||+..|.+++.+ ...++|+.+.|.|...+..++ +-.+..-.+-+.+. .++++
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~-~~h~~L 144 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSD-PKHSVL 144 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecC-Cceeec
Confidence 999999999999999999999999999877643 267899999999977653444 33344444445222 12221
Q ss_pred cC-CCCCE----EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-CeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 491 EG-HEAPV----YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 491 ~~-~~~~v----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
.. ..+.. .+..| +..|+++++|...|.+.++|..+.+.+..+.... ..|..+.++..|+.++..+. |.
T Consensus 145 p~d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DR 218 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DR 218 (405)
T ss_pred cCCCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cc
Confidence 11 11111 11123 4467999999999999999999998888777665 68999999999999999886 99
Q ss_pred eEEEEeCCCC-------c--eeeEecc-ccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 565 FLVEWNESEG-------T--IKRTYAG-FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 565 ~i~iwd~~~~-------~--~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
.|+.|+++.- + +.++++. -+...-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ ....
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~ 297 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELL 297 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hhee
Confidence 9999998631 1 1122221 1112345689999999998887 456799999999999999977653 3678
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+.|+|-...+++. ..|.+++|.....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeecc
Confidence 89999988888877 6789999987543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=202.05 Aligned_cols=313 Identities=14% Similarity=0.132 Sum_probs=206.4
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccc--ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
..+++|.+.|++++||.||++||+++.|++|++|+++.-..- +.+ ...-.-+..+.++|+||-+. +++++-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~-R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI-RQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh-hccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence 458899999999999999999999999999999999763211 110 01111224678999999986 56666666778
Q ss_pred EEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 478 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
++|....+.-.. .+...+. ||--. .-..|.-.+..+-....+++|++++
T Consensus 158 ~vyk~~K~~dG~-----~~~~~v~---------------------~D~~~-----f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 158 CVYKLVKKTDGS-----GSHHFVH---------------------IDNLE-----FERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred EEEEeeecccCC-----CCccccc---------------------ccccc-----cchhcccceEEEeecCCceEEEEec
Confidence 888722211111 1111111 11000 0011222344455566778888887
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC---CC---eeEEEeecCCCCCC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD---NV---NILTSTDAEGGLPN 631 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~---~~~~~~~~~~~~~~ 631 (945)
. +..|.+|+++ |+.+..+..... .....+++|+|+++++++..-.|++|..- .| +..+.+...+|...
T Consensus 207 ~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa 280 (420)
T KOG2096|consen 207 L----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA 280 (420)
T ss_pred C----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh
Confidence 5 7789999988 888777776554 45668899999999999999999999863 22 23445556667779
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (945)
|..++|+++...+++.+.||.+++||.+-..+.-+ |-+.|
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q---------------------Dpk~L------------------- 320 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ---------------------DPKIL------------------- 320 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEecCC---------------------CchHh-------------------
Confidence 99999999999999999999999999853211000 00000
Q ss_pred CCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEE
Q 002264 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (945)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw 791 (945)
+.. ..+. +...+....++.+|.|+.|+.+. ...++++
T Consensus 321 ---------------------------k~g--------------~~pl-~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 321 ---------------------------KEG--------------SAPL-HAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred ---------------------------hcC--------------Ccch-hhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 000 0000 00222334789999999666543 4467766
Q ss_pred eecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEe
Q 002264 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFN 858 (945)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd 858 (945)
.- ++|+.+...-.. |...|.+++|+++|+++|+++|..++++.
T Consensus 358 ~s----------------------e~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 358 AS----------------------EDGKDYPELEDI--HSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred Ec----------------------ccCccchhHHHh--hcCceeeEEecCCCcEEeeecceeeeeec
Confidence 43 333322221222 89999999999999999999999999886
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=182.64 Aligned_cols=249 Identities=16% Similarity=0.169 Sum_probs=199.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEcc------CCcc------cccceeeccccccEEEEEEecCCCeeEEEEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA------GSND------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~------~~~~------~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
..+..|.+++|.|.|.+.|+|+...+.+|-... .+.. ....+.-+.|.+.|+|.+|+|+|+ ++++|
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liatg 107 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIATG 107 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEec
Confidence 356789999999999999999999998876432 1111 111123456899999999999999 99999
Q ss_pred eCCCcEEEEe-C--CCc---eEEEecCCCCCEEEEEeeecC--CccEEEEEE-cCCeEEEEEccCCCeeEEecCCCCeEE
Q 002264 472 GDDKLIKVWE-L--SGR---KLFNFEGHEAPVYSICPHHKE--NIQFIFSTA-IDGKIKAWLYDTMGSRVDYDAPGHWCT 542 (945)
Q Consensus 472 s~d~~i~vwd-~--~~~---~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~ 542 (945)
+.|++|++.- . +.. .-..|.-|.+.|..++|...+ .+.+|++++ .|..|.+-|...++....+.+|.+.|.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 9999999875 2 221 124677899999999996433 456677665 466777788888999999999988887
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc------cCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
++ ++-+|-++++++ +|.+|++||++-...+.++... ....+..+++.|.|+.+++|-.|....+||++.
T Consensus 188 al-yswn~~m~~sgs----qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGS----QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred EE-EEecCcEEEccC----CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 65 455678888887 4999999999988888776432 224588899999999999999999999999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++++.+..|. ..|.++.|+|...++.+++.|..|++-|++..
T Consensus 263 ~r~iq~f~phs--adir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 263 GRMIQRFHPHS--ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CceeeeeCCCc--cceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999987664 48999999999999999999999999988643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=216.92 Aligned_cols=292 Identities=14% Similarity=0.219 Sum_probs=232.1
Q ss_pred ceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
+.+.++.|..-|.++.+|...++ +.||+ .|.|+|||+...... .++.-. . .....+.|.++..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k--~PvsqL-----------d-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNK--SPVSQL-----------D-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCC--Cccccc-----------c-ccCcccceeeeEec
Confidence 35677889999999999999986 89988 689999998654211 111100 1 12245789999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~ 494 (945)
|||+.|++|+.-.++.|||+..... +....+..-.-..++++.+||.+ +.+++..||.|.||| .+...++.|.+|.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987532 22224444445688899999999 788888899999999 7777889999999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
+.+.||.++. +|..|.+|+-|.+||.||++.+........ ...|.++.++|.+.+++++-. ++.+.+......
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp 624 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP 624 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCCc
Confidence 9999999865 778999999999999999998877665443 346999999999999999875 666766654332
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
....+..|.. .|-++.|.+.|+++++.+.|+-+..|....|..+..... ...|.++.++.|.+++++|+.|....
T Consensus 625 -~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 625 -EKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred -cceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 2233444444 788999999999999999999999999998887766543 34799999999999999999998888
Q ss_pred EEEC
Q 002264 655 ILAN 658 (945)
Q Consensus 655 iw~~ 658 (945)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=200.76 Aligned_cols=291 Identities=16% Similarity=0.219 Sum_probs=240.3
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.||...|..++-......+.+++.|.+.+||.+++|.++. .+.||.+.|.++.|++.+. ++++++.|++..||
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~---~Y~GH~GSVNsikfh~s~~--L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA---TYTGHTGSVNSIKFHNSGL--LLLTASGDETAHIW 217 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecccccee---eecccccceeeEEeccccc--eEEEccCCcchHHH
Confidence 378999999999998888899999999999999999998887 7889999999999999998 89999999999999
Q ss_pred e--CCC---------------------------------------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCe
Q 002264 481 E--LSG---------------------------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (945)
Q Consensus 481 d--~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (945)
. .+- .++..+.+|.+.|.+..|.. .|+.+++++.|.+
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GGQQMVTASWDRT 295 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Ccceeeeeecccc
Confidence 4 100 12566789999999988865 5688999999999
Q ss_pred EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCCC
Q 002264 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 520 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
-.+||+++++.+..+.+|....+.++-+|..+.+++.+. |.+.++||.+.. ..+..|+||.+ .++++.|..+ .
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr----DtTFRLWDFReaI~sV~VFQGHtd-tVTS~vF~~d-d 369 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR----DTTFRLWDFREAIQSVAVFQGHTD-TVTSVVFNTD-D 369 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEecc----CceeEeccchhhcceeeeeccccc-ceeEEEEecC-C
Confidence 999999999999999999999999999999999998885 899999999853 45678999988 8999999875 5
Q ss_pred EEEEEECCCcEEEEECCCC-eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCcccccc
Q 002264 599 HFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
.+++|+.|.+|++||+++. .++.++.... +++.++.+..+..++.--++..|++||+... ++.+ +.......++
T Consensus 370 ~vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaR-lPrtsRqgHr 444 (481)
T KOG0300|consen 370 RVVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLAR-LPRTSRQGHR 444 (481)
T ss_pred ceeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEEeccCCceEEEEecCCC-cccc-CCcccccccc
Confidence 7899999999999999885 4666666543 7899999999999999999999999999654 3332 3323334455
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
--+.+.+|..+.. -.-+++++.|..+.-|.+.
T Consensus 445 RMV~c~AW~eehp-----------------------------------~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 445 RMVTCCAWLEEHP-----------------------------------ACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred eeeeeeeccccCc-----------------------------------ccccccccccceeeeeEec
Confidence 5577777764421 1235678888888888875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-22 Score=215.14 Aligned_cols=466 Identities=15% Similarity=0.153 Sum_probs=299.7
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCe-eEEEEEeCCCcEEEEe-CCCce
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-LSGRK 486 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-~~l~s~s~d~~i~vwd-~~~~~ 486 (945)
-..-.||+|+++++.+.. ..|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|| ..+..
T Consensus 19 ~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ecccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 334578999999988765 579999999999888 78899999999999987663 3778999999999999 88888
Q ss_pred EEEecCCCCCEEEEEeeec--CCccEEEEEEcCCe------------EEEEEccCCCeeE-EecCCCCeEEEEEEcCCCC
Q 002264 487 LFNFEGHEAPVYSICPHHK--ENIQFIFSTAIDGK------------IKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~dg~------------i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~ 551 (945)
+.++..+. ++..+.+.+. .....+..+..|.. ++-+.+.+..... .+......-.++.+++.|.
T Consensus 95 lkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 95 LKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 88776433 2333322110 01111112222221 1111111110000 0000011135678888888
Q ss_pred EEEEEeecCCCCceEEEEeCCCCcee---eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC--Ce--eEEEee
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIK---RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VN--ILTSTD 624 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~ 624 (945)
+...+. +..+.+|........ +....++...+++.+++|+++++++|..||+|.+|.--. +. ....+.
T Consensus 174 ~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 174 FKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred EEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 877776 667899998775411 112223333478899999999999999999999996433 22 233444
Q ss_pred cCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcccc
Q 002264 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (945)
Q Consensus 625 ~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~ 704 (945)
.| ..+|++++|+++|.+|.+||..|.+.+|.+.++.+ ++- +-..++|..+.++||+...+..
T Consensus 249 WH--~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k---qfL----PRLgs~I~~i~vS~ds~~~sl~--------- 310 (792)
T KOG1963|consen 249 WH--HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK---QFL----PRLGSPILHIVVSPDSDLYSLV--------- 310 (792)
T ss_pred ec--ccccceeEEecCCceEeecccceEEEEEeecCCCc---ccc----cccCCeeEEEEEcCCCCeEEEE---------
Confidence 44 34899999999999999999999999999998852 221 1245678999999998876432
Q ss_pred ccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCC---CCCCccceEEEEEecCCCeEEE
Q 002264 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE---STDTSSKVVRLLYTNSAVGLLA 781 (945)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~s~dg~~l~~ 781 (945)
..|+.|.+....+.........+..+. .....+-.+.+.++|.-+.++.
T Consensus 311 ----------------------------~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 311 ----------------------------LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred ----------------------------ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 223444444332211111111111000 0113345677889997777888
Q ss_pred eeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC---------CC
Q 002264 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---------GG 852 (945)
Q Consensus 782 ~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s---------d~ 852 (945)
.+..|.|.+||+-.... .....+...+...|.. .+...+++++.+..|.+++++- ||
T Consensus 363 n~~~g~vQ~ydl~td~~------i~~~~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDST------IYKLQVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred cCCCceEEEEeccccce------eeeEEEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 89999999999754331 1222222233333331 1445688899999999999872 33
Q ss_pred e--EEEEeccCc----eEEEEe-cCCCCCeeEEEeecCCCc-eEEEeecCceEEEEecccc----------eEEEEecCC
Q 002264 853 K--ISLFNMMTF----KVMTTF-MSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVD----------EVKSKLKGH 914 (945)
Q Consensus 853 ~--i~iwd~~~~----~~~~~~-~~h~~~i~~l~~s~~~~~-~lasg~~dg~v~vwd~~~~----------~~~~~l~~h 914 (945)
. +++|-.... .+...+ ..|...+...+|.+.-.. ..++++.||.++||-+... .|...-.-|
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 3 889965533 332222 357777666555542333 8899999999999988321 243333348
Q ss_pred CcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 915 QKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 915 ~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
..++++++|+.||. +++++.|++|.+||.+
T Consensus 509 k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 509 KTPITALCFSQDGS-LLAVSFDDTITIWDYD 538 (792)
T ss_pred cCcccchhhcCCCc-EEEEecCCEEEEecCC
Confidence 89999999999995 5557888899999963
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=210.72 Aligned_cols=223 Identities=15% Similarity=0.172 Sum_probs=192.9
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C--
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~-- 482 (945)
.++|.+++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+++.|+.||. +|+|||.||.|.+|. .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4589999999999999999999999999999998777 6789999999999999999 999999999999997 2
Q ss_pred -------CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 483 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+-++++.|..|.-+|+++...+.+-..++++++.|.++++||+..+.....+..+ ..+.+++.+|-++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2356789999999999999887756679999999999999999998877776654 46899999999999999
Q ss_pred EeecCCCCceEEEEeCCCC----------------ceeeEeccccC-cceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 556 CGTSKDGDSFLVEWNESEG----------------TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~----------------~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
++. +|.|.+.++... ..+..+.+|.+ ..|+|++++.||..|++|+.||.++|||..+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 986 888988776432 23456667766 579999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCccEEEEcCC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+++++... .++|+.+.+.|=
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhh--ccccceeEeecc
Confidence 99888743 348999998763
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=195.70 Aligned_cols=272 Identities=16% Similarity=0.108 Sum_probs=209.9
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
....|+++.|+|.+..|++++.||++++|++...+... .-.|..++.+++|.++. .+++|+-||.|+.+|...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~---~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADES---TIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCc---eEEEeccCceEEEEEecC
Confidence 46789999999999999999999999999998864332 23599999999999865 489999999999999655
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
.....+..|..+|.|+...+.. ..+++|+.|++|++||.+.......+.... .|.++..+ |..|++++. +.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~----~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTS----DR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeec----Cc
Confidence 5566777899999999998644 579999999999999998744444444333 67777654 667777664 88
Q ss_pred eEEEEeCCCCceee-EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eeEEEeecCCC-------CCCc
Q 002264 565 FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (945)
Q Consensus 565 ~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v 632 (945)
.+.+||+++..... .....-+..+.++++-|++.-+++++-||.|.+=.++.. +....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 99999999865433 222222336889999999999999999999988666554 22333333321 1378
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
++++|+|-...||+|+.||.|.+||+.+. +.++.+... ...|.+++|+.+|..||.+...
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~-----~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKY-----ETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcch-hhhhhccCC-----CCceEEEEeccCCCeEEEEech
Confidence 99999999999999999999999999887 444444443 2358899999999999876553
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=196.61 Aligned_cols=262 Identities=16% Similarity=0.235 Sum_probs=212.9
Q ss_pred EEEEEcCCeEEEEEccCCC------------eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 511 IFSTAIDGKIKAWLYDTMG------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 511 l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
|++|+....|.-+++.... ..+.+..|...+++++.+ +.++++++. |.+|++||++....+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGss----DetI~IYDm~k~~qlg 77 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSS----DETIHIYDMRKRKQLG 77 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCC----CCcEEEEeccchhhhc
Confidence 5666666666666554322 234566788899999974 889999986 8899999999999888
Q ss_pred EeccccCcceEEEEEcCCCC--EEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 579 TYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
.+..|.+ .++++.|.+... +|++|+.||.|.+|+.....++..+..|.+ .|+.++.+|.|++-.+.+.|+.+++|
T Consensus 78 ~ll~Hag-sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 78 ILLSHAG-SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--QVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred ceecccc-ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc--ccceeEecCCCceEEEEcCCceeeee
Confidence 8888866 899999998764 999999999999999999999999998876 69999999999999999999999999
Q ss_pred ECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCC
Q 002264 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (945)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (945)
|+-.|....
T Consensus 155 NLV~Gr~a~----------------------------------------------------------------------- 163 (362)
T KOG0294|consen 155 NLVRGRVAF----------------------------------------------------------------------- 163 (362)
T ss_pred hhhcCccce-----------------------------------------------------------------------
Confidence 997661100
Q ss_pred CCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCC
Q 002264 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (945)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (945)
+-++
T Consensus 164 ---v~~L------------------------------------------------------------------------- 167 (362)
T KOG0294|consen 164 ---VLNL------------------------------------------------------------------------- 167 (362)
T ss_pred ---eecc-------------------------------------------------------------------------
Confidence 0000
Q ss_pred CcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCce
Q 002264 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (945)
Q Consensus 817 ~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~ 896 (945)
....+.+.|+|.|.+++.+..+.|-||.+++......+.. ...+.|+.|. ++..|++|.+|+.
T Consensus 168 --------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 168 --------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEW 230 (362)
T ss_pred --------------CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCce
Confidence 0112237788888888888888899999888776666653 3557888887 4678999999999
Q ss_pred EEEEecccceEEEEecCCCcceeEEEe--cCCcceeeeecCCceEEEEecC
Q 002264 897 IHIYNVRVDEVKSKLKGHQKRITGLAF--STSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 897 v~vwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
|.+||..++.+...+.+|..+|.++.+ .|++.+|+|+|.||.|+|||++
T Consensus 231 i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 999999999999999999999999985 4788999999999999999974
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=212.32 Aligned_cols=294 Identities=16% Similarity=0.235 Sum_probs=219.5
Q ss_pred EEcC-CeEEEEEccCCCeeEEecCCCC-eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEE
Q 002264 514 TAID-GKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (945)
Q Consensus 514 ~~~d-g~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 591 (945)
++.| ..+.+||++++.....+.+... .-.++.. -.+.+++++.. +...+.+|.+............. +.+.++
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~---~rp~l~vw~i~k~~~~~q~~v~P-g~v~al 87 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQL---KRPLLHVWEILKKDQVVQYIVLP-GPVHAL 87 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecc---cCccccccccCchhhhhhhcccc-cceeee
Confidence 3344 4589999999999988876522 1112211 12356776654 35689999987654443222222 268899
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC
Q 002264 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (945)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (945)
+-+|.|.+++.|+..|.|++|.+.+|.++..+..| ...|+++.|+-||.+|++|+.||.|.+|.+.+- +.....+
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l---v~a~~~~ 162 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL---VSADNDH 162 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCccEEEEEEEee---cccccCC
Confidence 99999999999999999999999999999988655 559999999999999999999999999988532 1111000
Q ss_pred ccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCc
Q 002264 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ 751 (945)
Q Consensus 672 ~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 751 (945)
.. .-++.|
T Consensus 163 ~~--------------------------------------------------------------~p~~~f---------- 170 (476)
T KOG0646|consen 163 SV--------------------------------------------------------------KPLHIF---------- 170 (476)
T ss_pred Cc--------------------------------------------------------------cceeee----------
Confidence 00 011112
Q ss_pred ceeeecCCCCCCccceEEEEEecC--CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCC
Q 002264 752 CRLVTMPESTDTSSKVVRLLYTNS--AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (945)
Q Consensus 752 ~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 829 (945)
. .|.-.|+++...+. ..++++++.|.++++||+.. |.++....
T Consensus 171 ------~---~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----------------------g~LLlti~---- 215 (476)
T KOG0646|consen 171 ------S---DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL----------------------GVLLLTIT---- 215 (476)
T ss_pred ------c---cCcceeEEEEecCCCccceEEEecCCceEEEEEecc----------------------ceeeEEEe----
Confidence 1 27778888877765 45799999999999998643 22222111
Q ss_pred cCCceeEEeecCCCceEEecC-CCeEEEEeccC----------------ceEEEEecCCCC--CeeEEEeecCCCceEEE
Q 002264 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT----------------FKVMTTFMSPPP--ASTFLAFHPQDNNIIAI 890 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~----------------~~~~~~~~~h~~--~i~~l~~s~~~~~~las 890 (945)
....+.+++++|-++.+.+|+ +|+|.+.++.. +..+..+.||.+ .|+|++++- ||.+|++
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlS 294 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLS 294 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEe
Confidence 356799999999999999998 89988876542 334667889998 899999999 9999999
Q ss_pred eecCceEEEEecccceEEEEecCCCcceeEEEecC
Q 002264 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 925 (945)
Q Consensus 891 g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 925 (945)
|+.||.|+|||+.+.++++++..-.++|+.+.+.|
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 99999999999999999999887778999999954
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=210.71 Aligned_cols=265 Identities=12% Similarity=0.231 Sum_probs=210.7
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
....+.|.++|+.+.+-|....++|+++..+.|.|||..+..-.... .......-.+.||...=++++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccccc
Confidence 34456799999999999999999999999999999998754332210 000012235889998888899999
Q ss_pred C-CCEEEEEECCCcEEEEEccCCcc----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C--CCceEE
Q 002264 417 D-GNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLF 488 (945)
Q Consensus 417 ~-g~~las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~--~~~~~~ 488 (945)
. .-.|++|+.|++|++||+..... +.....+.+|...|..++|++-... +|++++.|+.+.||| . +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 5 45789999999999999976443 4555578899999999999998776 899999999999999 6 556677
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
...+|.+.|+|++|+|.. +.+|++|+.|++|.+||++... ....+..|...|..+.|+|....+++.+. .|+.+.
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~ 342 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLN 342 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEE
Confidence 888999999999999985 5899999999999999998754 45688899999999999997765554432 399999
Q ss_pred EEeCCCC--------------ceeeEeccccCcceEEEEEcCCCCEEE-EEECCCcEEEEECCC
Q 002264 568 EWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDN 616 (945)
Q Consensus 568 iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~ 616 (945)
+||+..- +++..-.||.. .|..+.|+|...+++ +.++|+.+.||.+..
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9998642 22344456665 688899999887655 467999999999863
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-23 Score=215.14 Aligned_cols=281 Identities=15% Similarity=0.255 Sum_probs=225.2
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE-EEEcC-CCCEEEEEECCCc
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSK-EGNLLAVTTADNG 652 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~sp-~g~~l~~~~~dg~ 652 (945)
++.+.+.+|.. .+..+++.+ +..++++|.||++++|+-..++.+......++.+.|.. +++-+ ++..+++|+.|++
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCcc-chheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 44567778877 677777655 45899999999999999988777665545444445655 77775 5667999999999
Q ss_pred EEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcccc
Q 002264 653 FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVD 732 (945)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 732 (945)
|.+|...+. ..+..+.+|... |.++....++. +++|
T Consensus 83 i~v~~~~~~-~P~~~LkgH~sn-----VC~ls~~~~~~--------------------------------------~iSg 118 (745)
T KOG0301|consen 83 IIVFKLSQA-EPLYTLKGHKSN-----VCSLSIGEDGT--------------------------------------LISG 118 (745)
T ss_pred EEEEecCCC-Cchhhhhccccc-----eeeeecCCcCc--------------------------------------eEec
Confidence 999999877 777888887664 55665544443 4799
Q ss_pred CCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeecccc
Q 002264 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (945)
Q Consensus 733 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 812 (945)
+.|.++++|....... .++ +|...|.+++.-|++ .+++++.|.+|++|.
T Consensus 119 SWD~TakvW~~~~l~~-------~l~---gH~asVWAv~~l~e~-~~vTgsaDKtIklWk-------------------- 167 (745)
T KOG0301|consen 119 SWDSTAKVWRIGELVY-------SLQ---GHTASVWAVASLPEN-TYVTGSADKTIKLWK-------------------- 167 (745)
T ss_pred ccccceEEecchhhhc-------ccC---CcchheeeeeecCCC-cEEeccCcceeeecc--------------------
Confidence 9999999999864222 133 499999999999998 699999999999994
Q ss_pred ccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee
Q 002264 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (945)
Q Consensus 813 ~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~ 892 (945)
.++.+. .+.+ |.+-|..+++-+++.++-++.||.|++|++ +|+++.++.+|++.|.++.... ++..+++++
T Consensus 168 ----~~~~l~-tf~g--HtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~g 238 (745)
T KOG0301|consen 168 ----GGTLLK-TFSG--HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIVSTG 238 (745)
T ss_pred ----CCchhh-hhcc--chhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEEEec
Confidence 122222 3666 999999999999988877777999999999 7899999999999999999877 778999999
Q ss_pred cCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 893 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 893 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
+|++++||+.. ++.+.+.-..-.|+++.+-++|. +++|+.||.||||-.
T Consensus 239 EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 239 EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence 99999999976 78888886666899999998875 556899999999964
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=203.85 Aligned_cols=287 Identities=11% Similarity=0.212 Sum_probs=232.1
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC-EEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVG 422 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~-~la 422 (945)
.+.|++|.|+|..+ +|.+++.||+++||.+.......- +.+.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l-----------------qS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL-----------------QSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh-----------------eeeeeccCccceeeecCCCceEEE
Confidence 46999999999998 799999999999999865432211 11222356899999999999 899
Q ss_pred EEECCCcEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
+++.....+.||+.+.+..+.. .+.++. ..+.....+++++ +++..|..|.|.+-. .+++.+..++ ..+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~-~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLK-PPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccccc-CCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999987654322 334444 4677888999999 899999999999999 8888888877 57789999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC-eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC------
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------ 573 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~------ 573 (945)
+|+. +++.|++++.+|.|.+||++...+...+...+. .-++++.++++.++++++. .|.|.|||..+
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 678999999999999999999988887766655 4578889999999999985 89999999653
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCC-CCCCccEEEEcCCCCEEEEEECC
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+++..+..-.. .|+.+.|+++...|+.++ .+..+++-.+.+.....-++... ..+.|+|++|+|.|.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666655544 689999999999998887 57789999998877666554432 23468999999999999999999
Q ss_pred CcEEEEECC
Q 002264 651 NGFKILANA 659 (945)
Q Consensus 651 g~i~iw~~~ 659 (945)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999873
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=211.78 Aligned_cols=488 Identities=14% Similarity=0.141 Sum_probs=308.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC---C
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG---N 419 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g---~ 419 (945)
-...-..-.||+|++++++. .+.+|.||...+|.++. .+.+|..++.++.+.|.. .
T Consensus 15 ~n~~~~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~ 73 (792)
T KOG1963|consen 15 RNGNKSPAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENAN 73 (792)
T ss_pred ccceecccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccce
Confidence 33344556799999974443 36899999999998873 488999999999998854 4
Q ss_pred EEEEEECCCcEEEEEccCCccccccee-eccc-------ccc--------------------------------------
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQ-IDAH-------VGA-------------------------------------- 453 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~-~~~h-------~~~-------------------------------------- 453 (945)
++.+++.||.|++||...++.++.+.. +.-| ...
T Consensus 74 ~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~ 153 (792)
T KOG1963|consen 74 YLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK 153 (792)
T ss_pred EEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccc
Confidence 778999999999999988765542210 0000 000
Q ss_pred ---------EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE-EE---ecCCCCCEEEEEeeecCCccEEEEEEcCCe
Q 002264 454 ---------VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FN---FEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (945)
Q Consensus 454 ---------v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~-~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (945)
-.++.+++.|. +...-.+..+.+|+ ..+... .. -..|...+++.+++| ++++++++..||+
T Consensus 154 ~d~~~~~~~~~~I~~~~~ge---~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGr 228 (792)
T KOG1963|consen 154 GDFLKEHQEPKSIVDNNSGE---FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGR 228 (792)
T ss_pred hhhhhhhcCCccEEEcCCce---EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCc
Confidence 11222333332 11122244555666 332211 00 123666688889888 5589999999999
Q ss_pred EEEEEccC----CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 520 IKAWLYDT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 520 i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
|.+|.--. ......+..|...|++++|+++|.+|++||. ++.+.+|.+.+++ .+-++.- +.++..+.++|
T Consensus 229 I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~----E~VLv~Wq~~T~~-kqfLPRL-gs~I~~i~vS~ 302 (792)
T KOG1963|consen 229 ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR----EGVLVLWQLETGK-KQFLPRL-GSPILHIVVSP 302 (792)
T ss_pred EEEEeccccccccccceEEEecccccceeEEecCCceEeeccc----ceEEEEEeecCCC-ccccccc-CCeeEEEEEcC
Confidence 99995222 1223356667789999999999999999996 9999999999988 3333333 34789999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeEEEeecCCC---------CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccc
Q 002264 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (945)
Q Consensus 596 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (945)
|+...+...+|+.|.+..+.+......+.+... .+-.+.++++|.-+.++..+..|.|.+||+.+.... .
T Consensus 303 ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~ 381 (792)
T KOG1963|consen 303 DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-Y 381 (792)
T ss_pred CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee-e
Confidence 999999999999999998877655544433211 123567899997788888999999999999876433 2
Q ss_pred cccCC-----ccc-cccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcc
Q 002264 667 AVENP-----PFE-ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (945)
Q Consensus 667 ~~~~~-----~~~-~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 740 (945)
.+.-- ... ...-.+..++.+..|..+++..... ...-.....-.+++
T Consensus 382 ~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~---------------------------d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 382 KLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARI---------------------------DKFNFFDGEVSLKF 434 (792)
T ss_pred eEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeee---------------------------hhhhccCceEEEEE
Confidence 22111 111 1223456666677777765422110 00011111245678
Q ss_pred cccceeecCCcceee-ecCCCCCCccceEEEEEecC-CC-eEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCC
Q 002264 741 WQLAEIVDSGQCRLV-TMPESTDTSSKVVRLLYTNS-AV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (945)
Q Consensus 741 w~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~d-g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (945)
|........-.+... ..| |...+...++.+. .. ..++++.||.+++|-+...+-.. ...+
T Consensus 435 W~~n~~~kt~~L~T~I~~P----H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~-------------k~~s 497 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNP----HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIY-------------KKSS 497 (792)
T ss_pred EEEcCCcceeEEEEEEecC----CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccC-------------cCcc
Confidence 876643332222222 222 6666666665543 33 78999999999999885433111 1111
Q ss_pred cccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCc-eEEEEecCCCCCeeEEEeecC-CCceEEEeecCc
Q 002264 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQ-DNNIIAIGTEDS 895 (945)
Q Consensus 818 ~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~-~~~~lasg~~dg 895 (945)
+.... ..+.-|..++++++||.||..||++.+++|.+||..+. +...+...-..++..+.|... .....++....+
T Consensus 498 ~W~c~--~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (792)
T KOG1963|consen 498 NWTCK--AIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQ 575 (792)
T ss_pred ceEEe--eeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCc
Confidence 11100 11112688999999999999999999999999999883 333333222233444433220 011233445577
Q ss_pred eEEEEecccceEEE
Q 002264 896 TIHIYNVRVDEVKS 909 (945)
Q Consensus 896 ~v~vwd~~~~~~~~ 909 (945)
.+.+|++-+..+..
T Consensus 576 ~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 576 RLSVWNLLSMSLIW 589 (792)
T ss_pred eEehHhhhhhheec
Confidence 89999998776554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=191.30 Aligned_cols=253 Identities=17% Similarity=0.241 Sum_probs=201.2
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g 418 (945)
..|++-|-.+...--|++ |||++.|++|+|+.+....... ....+.||+++|..++|-. -|
T Consensus 8 t~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred hhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccC
Confidence 358888999999999995 9999999999999998765421 1244899999999999976 79
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCc--eEEEecCCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR--KLFNFEGHE 494 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~--~~~~~~~~~ 494 (945)
.+||+++.||.|.||.-.+| ..........|...|++++|.|.+.-+.|++++.||.|.|.+ .+|. .......|.
T Consensus 71 ~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE 149 (299)
T ss_pred cEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence 99999999999999998887 444444667899999999999998777999999999999998 3322 224456799
Q ss_pred CCEEEEEeeecCC-c-----------cEEEEEEcCCeEEEEEccCCCee--EEecCCCCeEEEEEEcCCC----CEEEEE
Q 002264 495 APVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSADG----SRLFSC 556 (945)
Q Consensus 495 ~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~~~----~~l~~~ 556 (945)
-.|++++|.|..- | +.|++|+.|..|+||+.+...-. ..+..|...|+.++|.|.- .+++++
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 9999999987521 1 56999999999999998876322 3477889999999999964 467787
Q ss_pred eecCCCCceEEEEeCCCC--ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 557 GTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
+. |+++.||-.... ....++.......+..+.|+..|+.|++++.|+.|.+|.-+
T Consensus 230 Sq----Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 230 SQ----DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cC----CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 74 999999986521 11122222122378899999999999999999999999754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=208.17 Aligned_cols=283 Identities=13% Similarity=0.139 Sum_probs=228.7
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC---ceeeEeccc-cCcceEEEEEcCCCCEEEEEECCCcEE
Q 002264 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 535 ~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~ 610 (945)
-.|+.-|..++++...+++++++ .+.|++||+... .++..+... .+..++++.+.|||+.|++|++-.++.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence 34677888999999999999997 889999998753 234444433 334688899999999999999999999
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccc
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
|||+....+....+.......+.+++.+||.+..+++..||.|.|||+.+. ..++.+++|+.. ..|+.+++||.
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDG-----ascIdis~dGt 564 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDG-----ASCIDISKDGT 564 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCC-----ceeEEecCCCc
Confidence 999987655444444343346789999999999999999999999999877 788999998875 66788888887
Q ss_pred ceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEE
Q 002264 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (945)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 770 (945)
.| .+|+-|++++-||+.......+ . ...+.|.++
T Consensus 565 kl-------------------------------------WTGGlDntvRcWDlregrqlqq---h------dF~SQIfSL 598 (705)
T KOG0639|consen 565 KL-------------------------------------WTGGLDNTVRCWDLREGRQLQQ---H------DFSSQIFSL 598 (705)
T ss_pred ee-------------------------------------ecCCCccceeehhhhhhhhhhh---h------hhhhhheec
Confidence 66 6899999999999986433222 1 256789999
Q ss_pred EEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC
Q 002264 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (945)
Q Consensus 771 ~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s 850 (945)
..+|.+.+++.+-.++.+.|-..... +... +.. |..-|.++.|++-|+++++.+
T Consensus 599 g~cP~~dWlavGMens~vevlh~skp----------------------~kyq--lhl--heScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSNVEVLHTSKP----------------------EKYQ--LHL--HESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ccCCCccceeeecccCcEEEEecCCc----------------------ccee--ecc--cccEEEEEEecccCceeeecC
Confidence 99999999999999998877643211 1111 222 889999999999999999999
Q ss_pred -CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEec
Q 002264 851 -GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (945)
Q Consensus 851 -d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~ 902 (945)
|+-+..|.+.-|..+...+ ....|+++.+|. |+++|++|+.|+...||.+
T Consensus 653 kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 8889999999888887776 577899999999 8999999999998888875
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=187.87 Aligned_cols=300 Identities=14% Similarity=0.210 Sum_probs=228.0
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~ 420 (945)
.|.+.|+++.+.+...+++++|+.||.|.+||++.........+.. -..|. .....-.+|.-.|.++.|-| |.-+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--k~~c~--v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--KHKCI--VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee--heeee--ccccCCccceeeeeeeEEeeecCce
Confidence 4889999999999644469999999999999998654322111100 00111 11223568999999999999 6668
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCC-eeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
+.+++.|.+++|||..+-+... .+ .-.+.|++-+++|-.. .-++++|..|-.|++.| .+|..-+.+.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8889999999999999876543 22 3567788889988543 22678888899999999 99999999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEe--------------cCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDY--------------DAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999854 78899999999999999764 222222 335568999999999999999987 8
Q ss_pred ceEEEEeCCCCceeeEecc---ccC---cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 564 SFLVEWNESEGTIKRTYAG---FRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
..+++|+...|+....-.+ ++. ..+. +. +.+...++.--.++.+.++++-.++.+..+..|. ..|.|.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEee
Confidence 8999999988753221111 111 0111 22 3334455555567999999999999999998884 38999999
Q ss_pred cCCCCEEEEEECCCcEEEEEC
Q 002264 638 SKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.|+-+...+|..|+.|..|-+
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999977
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=205.61 Aligned_cols=252 Identities=16% Similarity=0.235 Sum_probs=202.4
Q ss_pred ccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCccc-------ccceeeccccccEEEEEEecCCCeeEEEEEeC
Q 002264 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL-------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~ 473 (945)
..-|.+.|+.+...|. ...+|+++..+.|.|||...-... +....+.+|...-++++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3458999999999995 556777888999999998643221 222368899998899999998776 8999999
Q ss_pred CCcEEEEeCC--Cc------eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc--CCCeeEEecCCCCeEEE
Q 002264 474 DKLIKVWELS--GR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 474 d~~i~vwd~~--~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~ 543 (945)
|++|++||.+ +. +...+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999922 22 3467889999999999999854 789999999999999999 55556677888999999
Q ss_pred EEEcCCCCEE-EEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCe--
Q 002264 544 MLYSADGSRL-FSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN-- 618 (945)
Q Consensus 544 ~~~s~~~~~l-~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-- 618 (945)
++|+|-+..+ ++++. |++|.+||+++. +++.++.+|.. .+..+.|+|.. ..|++++.|+.+.+||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999966554 55554 999999999975 56788889887 89999999975 567778899999999987522
Q ss_pred ----------eEEEeecCCCCCCccEEEEcCCCC-EEEEEECCCcEEEEECCC
Q 002264 619 ----------ILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAI 660 (945)
Q Consensus 619 ----------~~~~~~~~~~~~~v~~v~~sp~g~-~l~~~~~dg~i~iw~~~~ 660 (945)
+...+...+|...|..+.|+|+.. .|++.++|+.+.||.+..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 122344456777999999999654 677888999999999864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=214.22 Aligned_cols=277 Identities=16% Similarity=0.200 Sum_probs=223.2
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.|...-+.++|.|+|. ++++++.||.|++|+........ ..+.-+...|.+++.. +.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~~g~~v~~ia~~--s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP------------------ETIDISGELVSSIACY--SNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC------------------chhhccCceeEEEeec--ccce
Confidence 5778899999999999 58888999999999976652211 1122377788888764 5599
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
++|+.+++|.+|.+.+++.-. .+...+-++.+++|+-+|+ +++.||.|-.|++-+ .++.....+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999876543 3445677899999999999 899999999999999 8888889999999999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--------CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
.++| ++.+|++.+.||.|++||+.++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9987 5689999999999999999987766554331 335778999999777777665 8999999999
Q ss_pred CCceeeEeccccCcc-eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC
Q 002264 573 EGTIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 573 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
+++....+....... +..+.|+|.|.+|++++.||.|.|||.++... |.....|++++|.|+++-+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 999888887554433 88899999999999999999999999988222 33334799999999887665555444
Q ss_pred cEEEE
Q 002264 652 GFKIL 656 (945)
Q Consensus 652 ~i~iw 656 (945)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 44443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=200.02 Aligned_cols=293 Identities=16% Similarity=0.243 Sum_probs=223.7
Q ss_pred CCCcEEEEEEeCCCC-eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCE
Q 002264 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~-~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~ 420 (945)
|.++|++++|+|... .++|+|...|+|-+||+.+.+.... ....+..|+.+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---------------~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---------------GVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---------------ceEEeccCCccccceEecCCChhh
Confidence 788999999999876 7899999999999999964433221 1134788999999999999 5568
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~ 498 (945)
+.+.+.||+|++-|++++.. ..+..+......+.++.|+.+.. .++.+..=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999987632 22223434566788899998888 667777777999999 55566777888999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCee----EEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC--
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-- 572 (945)
+++++|... .++++++.|++.+|||++.-... .....|...|.+..|||++-.|++.+. |..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999999854 79999999999999999864433 344567779999999999888888875 9999999984
Q ss_pred --CCceeeEeccccCc----ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE-EEEcCCCC-EE
Q 002264 573 --EGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGN-LL 644 (945)
Q Consensus 573 --~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~sp~g~-~l 644 (945)
.-.+..++...... ......|.|+.+++++|..-..|-|+|-..++.+..+..+... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 22333333221110 1233679999999999998889999999999988876554432 3443 58999777 44
Q ss_pred EEEECCCcEEEEECC
Q 002264 645 AVTTADNGFKILANA 659 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~ 659 (945)
+.++..|.|+||.-+
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 445557889988654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=203.47 Aligned_cols=273 Identities=13% Similarity=0.174 Sum_probs=202.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.|..++|-|||..+++.+ +..+.|||...|..+. .+++|.+.|+|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 799999999999866554 5789999999998873 3889999999999999999999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeec
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 505 (945)
.|..|.+|+-+-...++ + .|...|.|+.|+|-.+ .++|++-. ..-+|....+.+.. |...+.+++.++.
T Consensus 73 aDK~VI~W~~klEG~Lk----Y-SH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK----Y-SHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWT 141 (1081)
T ss_pred CceeEEEecccccceee----e-ccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh---hhhheeEEEeeec
Confidence 99999999865433232 2 5999999999999988 78888743 45688844433332 3343444444446
Q ss_pred CCccEEEEEEcCCeEEEEEccCCCeeEEecC---CCCeEEEEEEcCCCC-----EEEEEeecCCCCceEEEEeCCCCcee
Q 002264 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~-----~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.||++++.|-.+|+|.+-+- ++++...+.. ...+|.+++|+|... .+++.-. ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 68999999999999998863 3444444443 456899999999643 3333332 3445555443 3333
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..-..-. ....|+.+-++|.+++.||.|+.+.+|.. .|-.+.++....+ .|+.++..|+++.++.|+.||+|..|+
T Consensus 216 gk~r~L~-FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALN-FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCC-CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 2222111 13567889999999999999999999975 4555666654444 899999999999999999999999998
Q ss_pred CCC
Q 002264 658 NAI 660 (945)
Q Consensus 658 ~~~ 660 (945)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 854
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=199.14 Aligned_cols=288 Identities=14% Similarity=0.184 Sum_probs=224.4
Q ss_pred ccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc---eEEEecCCCCCEEEEEeeecCCcc-EEEEEEcCCeEEEEEc
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLY 525 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~ 525 (945)
-.+.|+++.|+|... ++++++.|+++++|-.+|+ .++.+.-...+|.+.+|.|. |. .+++++.-..++.||+
T Consensus 212 s~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred CcCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeec
Confidence 346799999999998 8999999999999985554 46666666789999999884 45 8999999999999999
Q ss_pred cCCCeeEEecC---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEE
Q 002264 526 DTMGSRVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA 602 (945)
Q Consensus 526 ~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 602 (945)
.+.+....-.. ....+....+++++++|+..|. .|.|.+....+++.+..+.-.. .+..++|+.+++.|++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----~G~I~lLhakT~eli~s~KieG--~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----NGHIHLLHAKTKELITSFKIEG--VVSDFTFSSDSKELLA 361 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEccc----CceEEeehhhhhhhhheeeecc--EEeeEEEecCCcEEEE
Confidence 87665442221 2235778889999999999985 8999999999999998887542 6889999999999999
Q ss_pred EECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCc-----cccccccCCcccccc
Q 002264 603 VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-----RSLRAVENPPFEALR 677 (945)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~ 677 (945)
++.+|.|++||++...++..+...+.. .-++++.+++|.+||+|+..|.|.|||.++.. +.++.+. -..
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-----NLt 435 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-----NLT 435 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-----hhh
Confidence 999999999999999999988766543 33678888999999999999999999976532 2222222 233
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
..|.++.|++|++.|+- ++...+..+++..+.+...-. .+
T Consensus 436 t~Itsl~Fn~d~qiLAi-----------------------------------aS~~~knalrLVHvPS~TVFs-----Nf 475 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAI-----------------------------------ASRVKKNALRLVHVPSCTVFS-----NF 475 (514)
T ss_pred eeeeeeeeCcchhhhhh-----------------------------------hhhccccceEEEeccceeeec-----cC
Confidence 56889999999988752 233334666666665422211 23
Q ss_pred CCCCCCccceEEEEEecCCCeEEEeeecCeEEEEee
Q 002264 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~ 793 (945)
|.....-+.|+|++|||.|.+++.+..+|.+.+|.+
T Consensus 476 P~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 476 PTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 333345678999999999999999999999999975
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=190.82 Aligned_cols=268 Identities=13% Similarity=0.211 Sum_probs=202.5
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~ 487 (945)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|++|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976544 6889999999999999999 899999999999999 999999
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC----eEEEEEEcCCCCEEEEEeecCCCC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----WCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
+.++ ..++|+.+.|+|......+++- .+..-.+-++..+.....-..... ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 8887 7889999999998765544443 343344455444222221111111 2233468899999999986 9
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC-------eeE--EEeecCCCCCCccE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-------NIL--TSTDAEGGLPNLPR 634 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 634 (945)
|.+.++|..+.+++..++-.....+..+.++..|..|+.-+.|..|+.|+...- ++. ..+..--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999998887665447888999999999999999999999998631 111 11111011123468
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEECCCCccccccccCCccccccCcceeeeecccccce
Q 002264 635 LRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 635 v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
++|+.+|.+++.++. ...++||....| .+++.+.|..... .-.+.|.|-...+
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~----l~DV~whp~rp~i 308 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEE----LLDVNWHPVRPII 308 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCchhh----eeecccccceeee
Confidence 899999999988875 467999999888 7888887765332 3345666655444
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-21 Score=203.11 Aligned_cols=293 Identities=13% Similarity=0.129 Sum_probs=209.3
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~ 588 (945)
..+++++.|+.+++||+.+++....+..+. .+.+++|+|+++.+++++. .++.|++||..+++....+..+.. .
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~--~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPSGPD--P 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccCCCC--c
Confidence 478899999999999999888777776544 3678999999998755442 378999999999988777765433 4
Q ss_pred EEEEEcCCCCEEEEE-ECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC-cEEEEECCCCccccc
Q 002264 589 GVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLR 666 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg-~i~iw~~~~~~~~~~ 666 (945)
..++++|+++.++++ +.++.|++||+.+++.+..+.... .+.+++|+|+|+++++++.++ .+.+|+..++.. ..
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~ 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VD 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EE
Confidence 568899999987665 468999999999988877765322 468899999999999988765 466677754411 10
Q ss_pred cccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccccee
Q 002264 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (945)
Q Consensus 667 ~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 746 (945)
..
T Consensus 152 ~~------------------------------------------------------------------------------ 153 (300)
T TIGR03866 152 NV------------------------------------------------------------------------------ 153 (300)
T ss_pred EE------------------------------------------------------------------------------
Confidence 00
Q ss_pred ecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccc
Q 002264 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (945)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 825 (945)
. ....+..++|+|+|+.+++++ .++.+++||+.... .... ++..... .
T Consensus 154 ---------~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~------~~~~-----~~~~~~~-----~ 202 (300)
T TIGR03866 154 ---------L------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK------VIKK-----ITFEIPG-----V 202 (300)
T ss_pred ---------E------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce------eeee-----eeecccc-----c
Confidence 0 011234578888988876554 48889999865321 1110 0000000 0
Q ss_pred cCCCcCCceeEEeecCCCceEEec--CCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe-ecCceEEEEec
Q 002264 826 AGVNLEEAVPCIALSKNDSYVMSA--TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNV 902 (945)
Q Consensus 826 ~~~~~~~~i~~l~~s~dg~~la~~--sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg-~~dg~v~vwd~ 902 (945)
.. .......++|+||+++++++ +++.+.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|.|||+
T Consensus 203 ~~--~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 203 HP--EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cc--ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 00 11224568899999975544 36789999999988876654 445799999999 88888776 56899999999
Q ss_pred ccceEEEEecCCCcceeEEEecC
Q 002264 903 RVDEVKSKLKGHQKRITGLAFST 925 (945)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~ 925 (945)
.+++++.++... ...++++|+|
T Consensus 279 ~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 279 AALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcEEEEEEcc-cccceeEeCC
Confidence 999999999855 5568888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-22 Score=213.22 Aligned_cols=267 Identities=13% Similarity=0.185 Sum_probs=223.2
Q ss_pred cCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC-cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
..|....+.|+|.|+|.+|.+++.||.|++|+.... +... ++..+...|.+++-. +. +|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 468899999999999999999999999999998765 3333 343477788888775 44 799999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.++..-..+....-++.+++|+. +|.+++.||.|-.|++-++........+.+|..+|.++.|+|.+.+|++.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 66665545555667899999865 6789999999999999999999999999999999999999999999999886
Q ss_pred CCCceEEEEeCCCCceeeEecccc-------CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFR-------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
+|.|++||+.++.+..++.+-. ...+..++|+|++..+++.+.|+.|.+|+..+.+....+....+...+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 9999999999998777665432 2245668999999999999999999999999999998887766665699
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccce
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
.++|+|+|++||+++-||.|.|||.++-.+ | .....|.+++|.|++..+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~---~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHER-------H---EFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccchh-------c---cccceeEEEecCCCCCee
Confidence 999999999999999999999999986311 1 122357888888887654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=204.64 Aligned_cols=274 Identities=12% Similarity=0.098 Sum_probs=200.4
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE-EEEECCCcEEEEEccC
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAG 437 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~~ 437 (945)
++++++.|+.|++||..+++.+. .+.++. .+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~-------------------~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTR-------------------TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEE-------------------EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 68899999999999998877542 133343 46789999999976 5667789999999998
Q ss_pred CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc
Q 002264 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (945)
Q Consensus 438 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 516 (945)
++... .+..+. .+..++|+|+++. ++++++.|+.+++|| .+++.+..+.. ...+.+++|+| ++.++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 86554 343333 3567899999984 345566789999999 66666666653 33467788876 6678888877
Q ss_pred CC-eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC------cceE
Q 002264 517 DG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNG 589 (945)
Q Consensus 517 dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~------~~~~ 589 (945)
++ .+..||..+......... ......++|+|+++.+++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877655444332 234577899999998876542 378899999999887766542211 1134
Q ss_pred EEEEcCCCCEEEEE-ECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE-ECCCcEEEEECCCCcccccc
Q 002264 590 VVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 590 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~-~~dg~i~iw~~~~~~~~~~~ 667 (945)
.++|+|+++.++++ +.++.+.+||+.+++.+..+.. ++ .+.+++|+|+|++|+++ +.+|.|++||+.++ +....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 57899999986654 4577899999999887765542 22 68899999999999886 45899999999987 44333
Q ss_pred c
Q 002264 668 V 668 (945)
Q Consensus 668 ~ 668 (945)
+
T Consensus 287 ~ 287 (300)
T TIGR03866 287 I 287 (300)
T ss_pred E
Confidence 3
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-22 Score=203.24 Aligned_cols=280 Identities=14% Similarity=0.220 Sum_probs=211.8
Q ss_pred cCCCCCcceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc
Q 002264 329 SLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (945)
Q Consensus 329 ~~~~~~~~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (945)
++...|..+...+ +|++.|.|+...|.|. +||+|+.||+|+||.+.+|.++.... -.+
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~ 442 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDS 442 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecc
Confidence 3445555555554 5999999999999999 59999999999999999999885311 234
Q ss_pred cEEEEEEcCCCC--EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE----eCCCcEEEEe
Q 002264 408 SVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----GDDKLIKVWE 481 (945)
Q Consensus 408 ~V~~i~~s~~g~--~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~----s~d~~i~vwd 481 (945)
.|.||+|+|.++ .||++-.+ .+.|.+..-|..+.... ... .|+++ ..|+.+..|.
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~----------------t~e--ll~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGP----------------TKE--LLASAPNESEPDAAVVTWS 503 (733)
T ss_pred eeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcc----------------hhh--hhhcCCCccCCcccceeec
Confidence 899999999765 45555443 46676655553322100 001 12222 2356777887
Q ss_pred -CCC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 482 -LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 482 -~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
... .-++....|...|..+.|+. .|.+|++...+ ..|.|+++........+....+.+.++.|+|...++
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence 311 11344556889999999987 55799887664 568899988777776676777889999999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC-eeEEEeecCCCCCCc
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNL 632 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v 632 (945)
++++ ...|++||+..+++++++..... .+..++++|.|..|++|+.|+.+..||+.-. ++.+.+..|.. .+
T Consensus 582 fVaT-----q~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~--av 653 (733)
T KOG0650|consen 582 FVAT-----QRSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK--AV 653 (733)
T ss_pred EEEe-----ccceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh--hh
Confidence 9987 67899999999888877766554 7889999999999999999999999999754 46666666654 79
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
++|+|++.-.++++|+.||++.|+..
T Consensus 654 r~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 654 RSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhccccceeeeecCCCcEEEEee
Confidence 99999999999999999999999864
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=220.82 Aligned_cols=253 Identities=17% Similarity=0.337 Sum_probs=223.1
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~ 438 (945)
+++.+..+-.+++||.+. +..|...|.|+..-..++.+++|+.|..+-+|.+...
T Consensus 6 ~~m~~~~~t~Lr~~~~~~-------------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp 60 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE-------------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP 60 (825)
T ss_pred ccceeeeeeccccccchh-------------------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC
Confidence 355555566777777643 4458899999998778999999999999999998665
Q ss_pred cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC
Q 002264 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (945)
Q Consensus 439 ~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 517 (945)
..+. .+.+|..+|.++.|+++.. ++++|+.+|+|++|| ..++.++++.+|...+.++.|+|. +.+.++|+.|
T Consensus 61 ~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStd 133 (825)
T KOG0267|consen 61 NAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTD 133 (825)
T ss_pred chhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc--eEEecccccc
Confidence 4444 5789999999999999988 899999999999999 899999999999999999999885 4789999999
Q ss_pred CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
+.+++||++..++...+..|...+..+.|+|+|++++.++. |..+++||...|+....|..|.. .+..+.|+|..
T Consensus 134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e 208 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE----DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLE 208 (825)
T ss_pred ccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC----cceeeeecccccccccccccccc-cccccccCchh
Confidence 99999999999999999998889999999999999999985 79999999999999999999887 78889999998
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
-.++.|+.|+++++||+++.+.+...... ...|.+.+|+|++..+++|...
T Consensus 209 ~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence 88999999999999999998888777655 4489999999999999888654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=200.83 Aligned_cols=288 Identities=16% Similarity=0.197 Sum_probs=209.8
Q ss_pred EEEeC--CCCeEEEEEeCcCcEEEEEcCCCCcc-cccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC
Q 002264 350 MDFHP--SHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (945)
Q Consensus 350 v~fsp--~g~~llasgs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~ 426 (945)
+.|++ +.+.+||.+..||.|.++|.....-. ....+ .....|.+.|..++|-|....|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEccC
Confidence 44543 45568999999999999998654322 11111 235679999999999997778999999
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCce------------------
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK------------------ 486 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~------------------ 486 (945)
|.++++||++++...... .+.+|.+.|.+++|.|++.. .|++|+.||.|.||| .++..
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 999999999998776533 46799999999999999887 899999999999999 33300
Q ss_pred --------EEEecCCCCCEEE----EEeeecCCccEEEEEEc-CCeEEEEEccCCCeeEEe--------cCC---CCeEE
Q 002264 487 --------LFNFEGHEAPVYS----ICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDY--------DAP---GHWCT 542 (945)
Q Consensus 487 --------~~~~~~~~~~v~~----~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~--------~~~---~~~i~ 542 (945)
+.....+...|.+ +.| . |...|++++. |+.|++||++........ ..+ ...+.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 1111233333433 333 2 5578888887 999999999876544321 222 23677
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--ceeeEeccccCcceE-EEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
++.....|.+|++.+. |+.|++|++.+- .++..+.++....+. .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888898887775 999999999864 344455554432222 235789999999999999999999988654
Q ss_pred EE-EeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCc
Q 002264 620 LT-STDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 620 ~~-~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
-. .+.+ |...|++++|.| .-.-++++++|.++++|++..+.
T Consensus 352 ~~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 352 PPALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ChhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 33 3333 344899999998 33456677999999999997663
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=201.38 Aligned_cols=288 Identities=20% Similarity=0.215 Sum_probs=209.6
Q ss_pred EEEEcC---CCCEEEEEECCCcEEEEEccCCccc---ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 411 RVAWSP---DGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 411 ~i~~s~---~g~~las~~~dg~i~vwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
+..|++ ....||.+.+||.|.++|......- +.+.....|...|.++.|.| |+. .|++++.|.++++|| ..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 356665 3457899999999999998753221 12235668999999999999 554 899999999999999 77
Q ss_pred CceEEE--ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---------------------------EEe
Q 002264 484 GRKLFN--FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---------------------------VDY 534 (945)
Q Consensus 484 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------~~~ 534 (945)
++++.. +.+|...|.++||.+. |...+++|+.||.|.|||++-.... ...
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 777655 8899999999999987 4578999999999999998643200 011
Q ss_pred cCCCCeEEE---EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee--------EeccccC--cceEEEEEcCCCCEEE
Q 002264 535 DAPGHWCTT---MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR--------TYAGFRK--KSNGVVQFDTTQNHFL 601 (945)
Q Consensus 535 ~~~~~~i~~---~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~l~ 601 (945)
..+...|.+ +.+..|...|++++. .|+.|++||++...... .+..+.. ..+.++..+..|.+++
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 112234444 556689999999886 59999999998754322 2222211 1255566777789999
Q ss_pred EEECCCcEEEEECCCCe--eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCc
Q 002264 602 AVGEDSQIKFWDMDNVN--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (945)
+.+.|+.|++|++.+.. ++..+.++-....-..-..+||+.++++|+.|+...+|.+.+.......+.+|...
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e----- 362 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE----- 362 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE-----
Confidence 99999999999998643 33333322211112233568999999999999999999999887777777777765
Q ss_pred ceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccce
Q 002264 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (945)
Q Consensus 680 i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (945)
|.+++|.|... .-+++++.|.++++|++..
T Consensus 363 Vt~V~w~pS~~------------------------------------t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 363 VTTVRWLPSAT------------------------------------TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred EEEEeeccccC------------------------------------CCceeeccCcceEEEeccC
Confidence 67787766522 1236778899999999864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=198.01 Aligned_cols=237 Identities=9% Similarity=0.162 Sum_probs=177.1
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.++.||++.|.||+..|.|.+||+|+.||+|+||.+.+|.+++... ..+.|.|++|+|.+..-+|+.+- +..+.+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 4688999999999999999999999999999999999999987442 44579999999998864444444 444666
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEE----EcCCeEEEEEccCC----CeeEEecCCCCeEEEEEEcCCC
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----AIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLYSADG 550 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~s~~~ 550 (945)
-+ .-|..+..-.. . ..|+++ ..++.+..|.-... ..+.....+...|..+.|+..|
T Consensus 469 vnp~~G~~~e~~~t--~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPT--K-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred eCccccchhhhcch--h-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 66 54432211100 0 111111 23456777854321 1223445577789999999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
.||++...+ ++...|.|+++...+...-|....+ .+.++.|+|...+|++++. ..|++||+....+++.+.... .
T Consensus 534 DYlatV~~~-~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~--k 608 (733)
T KOG0650|consen 534 DYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS--K 608 (733)
T ss_pred ceEEEeccC-CCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC--e
Confidence 999988753 3467899999988777666655444 7888999999988888875 579999999887777665433 3
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|..++.+|.|..|+.|+.|+.+..+|+.-+
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 7899999999999999999999999999755
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=177.17 Aligned_cols=295 Identities=15% Similarity=0.212 Sum_probs=211.7
Q ss_pred cCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCc------ee-e--------EeccccCcceEEEEEcC-CC
Q 002264 535 DAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGT------IK-R--------TYAGFRKKSNGVVQFDT-TQ 597 (945)
Q Consensus 535 ~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~------~~-~--------~~~~~~~~~~~~~~~~~-~~ 597 (945)
..|++.|+++.+.+ .|+++++++. |+.|.+||++... .+ + .-.+|. ..|..+.|-| |.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGga----dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk-y~iss~~WyP~Dt 114 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGA----DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK-YAISSAIWYPIDT 114 (397)
T ss_pred ccCCCccceeeeccccceEEeecCC----CccEEEEEeccccchhhccceeheeeeccccCCccce-eeeeeeEEeeecC
Confidence 45778899998887 6889999987 9999999997543 00 0 011222 2466666666 55
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC---CCCEEEEEECCCcEEEEECCCCccccccccCCccc
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFE 674 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 674 (945)
..+.+++.|.++++||.++.+....+..++ .|.+-+++| ...++|+|..|-.|++.|+.+| ....++
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~---~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~L------ 184 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEG---KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTL------ 184 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeecCc---eeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeee------
Confidence 678888899999999999998888887654 688888888 3457888999999999999887 222211
Q ss_pred cccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCccee
Q 002264 675 ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRL 754 (945)
Q Consensus 675 ~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 754 (945)
T Consensus 185 -------------------------------------------------------------------------------- 184 (397)
T KOG4283|consen 185 -------------------------------------------------------------------------------- 184 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCccceEEEEEecCCCeE-EEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCc
Q 002264 755 VTMPESTDTSSKVVRLLYTNSAVGL-LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (945)
Q Consensus 755 ~~~~~~~~~~~~v~~l~~s~dg~~l-~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 833 (945)
. +|...|.++.|+|...++ ++++.||.|++||+.... | ...+.|..+++.....-....|.+.
T Consensus 185 ---s---GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras----g------cf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 185 ---S---GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS----G------CFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred ---c---cccCceEEEEeccCceeEEEecCCCceEEEEEeeccc----c------eeEEeecccCccCccccccccccce
Confidence 1 277788888888877765 455668888888875431 1 1122233332211111122348999
Q ss_pred eeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecC---CCCC----eeEEEeecCCCceEEEeecCceEEEEecccc
Q 002264 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS---PPPA----STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (945)
Q Consensus 834 i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~---h~~~----i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~ 905 (945)
+..+||+.||.++++.+ |+++++|+..+|+....-.+ |... +. +. +. +...++---.++.+.++++-+|
T Consensus 249 vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sg 325 (397)
T KOG4283|consen 249 VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEG 325 (397)
T ss_pred eeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ec-ccceEEEEecCCeEEEEEccCc
Confidence 99999999999999998 99999999987754221111 2111 11 22 33 3334444445689999999999
Q ss_pred eEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
..+..+..|-..|.+.++.|+-+.+.++..|+.|..|-
T Consensus 326 s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 326 SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred eEEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence 99999999999999999999999999999999999884
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=177.70 Aligned_cols=254 Identities=11% Similarity=0.149 Sum_probs=191.8
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC-cccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEE
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~ 478 (945)
-.+|.+-|.++.|.+-|+.+|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 5679999999999999999999999999999996543 334444567889999999999764 66 999999999999
Q ss_pred EEeC-CC---------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE------ec-------
Q 002264 479 VWEL-SG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD------YD------- 535 (945)
Q Consensus 479 vwd~-~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~------- 535 (945)
||.. .. ....++....+.|++++|.|..-|-.+++++.||.+|||+.-....... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 9983 11 1235566778899999999999899999999999999998654332221 11
Q ss_pred CCCCeEEEEEEcCC---CCEEEEEeec-CCCCceEEEEeCCCC----ceeeEeccccCcceEEEEEcCCC----CEEEEE
Q 002264 536 APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAV 603 (945)
Q Consensus 536 ~~~~~i~~~~~s~~---~~~l~~~~~~-~d~~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~ 603 (945)
.+..+..|+.|+|. ..+|++++.+ ....+.++||....+ ..+.++.++.. .|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23346788999873 3456666531 111246777775443 24456677776 89999999963 578889
Q ss_pred ECCCcEEEEECCCCe-----------------eEEEe-ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 604 GEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 604 ~~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+.|| |+||.+.... .+..+ ...+|.+.|..+.|+-.|..|++.|+||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 11222 233556699999999999999999999999999764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-22 Score=210.85 Aligned_cols=247 Identities=13% Similarity=0.209 Sum_probs=195.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CCEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~las~ 424 (945)
.+..|+|+....++|||++..|.|.+||+....... ....+..|+..|+++.|++. ..+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk----------------~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK----------------LLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccch----------------hhhHhhhhccceeeeeeccCCccEEEec
Confidence 456678886555689999999999999997621110 11357889999999999994 6789999
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEe
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~ 502 (945)
+.||+|++||++..+... ++.+....|.+++|+|...+ .|+++...|.+.+|| ...++...+..|.++|.|+.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876555 66778889999999997655 899999999999999 556677889999999999999
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEE-EEEeecCCCCceEEEEeCCCCc-eeeE
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGT-IKRT 579 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l-~~~~~~~d~~~~i~iwd~~~~~-~~~~ 579 (945)
+| ++.+|++||.|++|+|||+.+......... ...++.++.|-|+..+. ++++. -.+..|++||++..- +..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 99 668999999999999999986555443333 34589999999987754 44443 247889999998764 4567
Q ss_pred eccccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCC
Q 002264 580 YAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
+..|.. .++.++|.. +...+.+++.||.|..-..+++
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777776 788899865 4567888999998876554443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=205.88 Aligned_cols=296 Identities=12% Similarity=0.151 Sum_probs=223.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~la 422 (945)
+....++...++-..+++ ++ ...+.||.+....... ++.+.. ..-..-...+..|+|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~-AG-rs~lklyai~~~~~~~--~~~~~~----------k~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVV-AG-RSLLKLYAINPNDFSE--KCNHRF----------KTKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEE-ec-ccceeeEeeCcccCCc--ceeeec----------ccccceeeehhhcccccchhhhhe
Confidence 446778888888876444 44 4577888775533221 111100 00000112455688886 578999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~ 501 (945)
+++..|.|.+||+.....-+....+..|...+.++.|++...+ +|+|||.||+|++|| ...+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999863222333367889999999999998877 899999999999999 77778888888899999999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
|+|.. +..++++.+.|.+++||++... ....+..|.++|.++.|+|++.+|++||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99985 5899999999999999998754 45678899999999999999999999996 999999999987766555
Q ss_pred ccccCcceEEEEEcCCCC-EEEEEE--CCCcEEEEECCCC-eeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEE
Q 002264 581 AGFRKKSNGVVQFDTTQN-HFLAVG--EDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~i 655 (945)
.-+...++..+.|-|... +|++++ .|-.|+|||++.. -+..++..| ...++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 555566899999999765 455555 6889999999764 344555544 44789999976 5667888899988765
Q ss_pred EECCCC
Q 002264 656 LANAIG 661 (945)
Q Consensus 656 w~~~~~ 661 (945)
-..+++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 554443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-20 Score=189.88 Aligned_cols=242 Identities=12% Similarity=0.163 Sum_probs=156.2
Q ss_pred CCCEEEE--EECCCcEEEEECCCC-ee-EEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccc-ccc
Q 002264 596 TQNHFLA--VGEDSQIKFWDMDNV-NI-LTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLR-AVE 669 (945)
Q Consensus 596 ~~~~l~~--~~~dg~i~iwd~~~~-~~-~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~-~~~ 669 (945)
+...+++ .+..|.|-||+++.. ++ -..+..-.....|+.+.|.| |...||++++||.|++|.+..+.-... ...
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 3444444 556899999998752 21 11222212233789999999 888999999999999999976521111 111
Q ss_pred CCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecC
Q 002264 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS 749 (945)
Q Consensus 670 ~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 749 (945)
......+...|.++.|.|-.. ..+++++.|-+|++||+......
T Consensus 670 e~~lt~h~eKI~slRfHPLAa------------------------------------dvLa~asyd~Ti~lWDl~~~~~~ 713 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAA------------------------------------DVLAVASYDSTIELWDLANAKLY 713 (1012)
T ss_pred ceeeecccceEEEEEecchhh------------------------------------hHhhhhhccceeeeeehhhhhhh
Confidence 112233445688888887532 34588999999999999864433
Q ss_pred CcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCC
Q 002264 750 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (945)
Q Consensus 750 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 829 (945)
. .+.+ |.+.|.+++|||||+.+++.+.||++++|+-...+.. ++...+ .
T Consensus 714 ~-----~l~g---HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p------------v~Eg~g-------p---- 762 (1012)
T KOG1445|consen 714 S-----RLVG---HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP------------VYEGKG-------P---- 762 (1012)
T ss_pred h-----eecc---CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc------------cccCCC-------C----
Confidence 2 2333 9999999999999999999999999999964332210 111000 0
Q ss_pred cCCceeEEeecCCCceEEecC-C----CeEEEEeccCce--EEEEecCC-CCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 830 LEEAVPCIALSKNDSYVMSAT-G----GKISLFNMMTFK--VMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~s-d----~~i~iwd~~~~~--~~~~~~~h-~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
...+-..+.|.-||+++++.+ | ..|.+||..+.. .+.+..-. ...+.--.+.+|.+-++++|-.|..|++|.
T Consensus 763 vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 763 VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 112233456667999888776 4 348999977532 33332211 112333345565677888999999999999
Q ss_pred ccc
Q 002264 902 VRV 904 (945)
Q Consensus 902 ~~~ 904 (945)
+-.
T Consensus 843 v~~ 845 (1012)
T KOG1445|consen 843 VIY 845 (1012)
T ss_pred ecC
Confidence 753
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=182.66 Aligned_cols=308 Identities=16% Similarity=0.211 Sum_probs=219.0
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....+...+|..+.|.+++...+|||+.|..|+||.+..+..-.. .. ...-...+..|...|+++.|+|+
T Consensus 7 ei~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-~~---------~V~y~s~Ls~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 7 EISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-DM---------KVEYLSSLSRHTRAVNVVRFSPD 76 (434)
T ss_pred EEEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-ce---------eEEEeecccCCcceeEEEEEcCC
Confidence 444555669999999998875699999999999999876543221 00 00112458899999999999999
Q ss_pred CCEEEEEECCCcEEEEEcc--------C-----CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 418 GNYVGVAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
|..||+|+.+|.|.+|... + .+.....+.+.+|...|..++|+|++. ++++++-|.++++|| ..
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEecc
Confidence 9999999999999999876 2 111223346778999999999999999 899999999999999 99
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------------------CCC----Ce
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------------APG----HW 540 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~----~~ 540 (945)
|..+..+.+|...+..++|.|- ++++++-+.|...+.+.+...+...... .|. ..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ceeEeeccccccccceeecchh--hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 9999999999999999999774 4889999988876666654433222111 011 13
Q ss_pred EEEEEEcCCCCEEEEEeecCCC-----CceEEEEeCCC-CceeeEeccccCcceEEEEEcCC-----------------C
Q 002264 541 CTTMLYSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTT-----------------Q 597 (945)
Q Consensus 541 i~~~~~s~~~~~l~~~~~~~d~-----~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 597 (945)
...++|+|||..+++....-+- -+..++++-.. .++...+.+... ....+.++|- -
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEecccccccccccccc
Confidence 4567899999998875421000 12334444332 223333443333 2222333320 1
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.+++....+.|++||..+..++..... -|...|+.++|++||..++..+.||...+...+..
T Consensus 312 rlvfaiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 312 RLVFAIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ceEEEEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 2334444556899999999888877654 24558999999999999999999998888777654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=216.87 Aligned_cols=296 Identities=15% Similarity=0.259 Sum_probs=225.9
Q ss_pred EEEEEEeCCCCeEEEEEeC----------cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 347 VISMDFHPSHQTLLLVGSS----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
-..++|||++..++|+|.. +.++.||.+.-.... ...+..--..-....+.++|.+
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~--------------~dlk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES--------------SDLKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc--------------ccccccccccccccceeeeecc
Confidence 3567999999756777643 344555544321111 0000000112346788999999
Q ss_pred CCCE----EEEEECCCcEEEEEccC---CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE
Q 002264 417 DGNY----VGVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (945)
Q Consensus 417 ~g~~----las~~~dg~i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~ 488 (945)
.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.+.. ++++|+.||.|.||| .+-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88899999999999875 4445555577889999999999998776 899999999999999 3332222
Q ss_pred Ee--cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 489 NF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 489 ~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
.+ ....+.|.+++|+.. ..+.|++++.+|++.|||++..+.+..+..+.. .+..+.|+|++..-+....+.|+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 22 124567999999865 457899999999999999999988877766554 5789999998765444444567788
Q ss_pred eEEEEeCCCC-ceeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC-
Q 002264 565 FLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG- 641 (945)
Q Consensus 565 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g- 641 (945)
.|.+||++.. .+++++++|.. .+.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|..
T Consensus 233 viqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P 309 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNP 309 (1049)
T ss_pred eeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCc
Confidence 9999999864 56778888887 78889999876 7888999999999999999999999987544 89999999954
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 002264 642 NLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+++++-||.|.|+.+.+.
T Consensus 310 ~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred chhhhheeccceeeeeeecC
Confidence 48899999999999999765
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=209.77 Aligned_cols=233 Identities=10% Similarity=0.189 Sum_probs=208.3
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
-|...|.|+..-..++ .+++|+.|..+-+|....-..+ ..+.+|+.+|.|+.|+++..+|
T Consensus 26 ~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i-------------------~S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAI-------------------TSLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred hhhhhhceeeeeccce-eeccCCCceeeccccccCCchh-------------------heeeccCCcceeeecCcchhhh
Confidence 3788999999876777 6999999999999987554333 2278999999999999999999
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
++|+.+|+|++||++.++.++ ++.+|...+.++.|+|-+. ++++|+.|+.+++|| ....+.+.+.+|...|.++
T Consensus 86 aagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred cccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 999999999999999988777 8889999999999999999 889999999999999 7788999999999999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
.|.| +|+++++++.|.++++||...++....+..|...+.++.|+|..-.++.++. |..+++||+++.+.+...
T Consensus 161 ~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 161 RLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSG 234 (825)
T ss_pred eecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeecc
Confidence 9977 6799999999999999999999999999999999999999999888888886 999999999998888777
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECC
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGED 606 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~d 606 (945)
..... .+.+..|+|++..+++|...
T Consensus 235 ~~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 235 KPETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCccC-CceeeeecCCceeeecCchh
Confidence 66644 78999999999988888754
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=178.66 Aligned_cols=290 Identities=16% Similarity=0.250 Sum_probs=211.2
Q ss_pred cCCCcEEEEEEeC----CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 342 HQGSTVISMDFHP----SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 342 ~h~~~V~~v~fsp----~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.|+.+|..++|.+ +...++|+.+ ...+.+|+......+. .++...-..|......++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEec
Confidence 3888999999985 2233566665 5688899875433111 0111223358888999999875
Q ss_pred ----CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe--
Q 002264 418 ----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (945)
Q Consensus 418 ----g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-- 490 (945)
..+||.|+.-|.|+|.|+.+++..+ .+.+|...|..+.|.|+..+ +++++|.|.+|++|+ .++.++..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3478999999999999999988776 68899999999999999876 899999999999999 888888776
Q ss_pred -cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE----------------------------ecCCCCeE
Q 002264 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----------------------------YDAPGHWC 541 (945)
Q Consensus 491 -~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~i 541 (945)
.+|.+.|.++.|+. +|.+|+++|.|.++++|++...+.... ...|...|
T Consensus 177 ~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999977 557999999999999999874321110 01122223
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCce-------------eeEeccccCcceEEE--EEcCCCCEEEEEEC
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI-------------KRTYAGFRKKSNGVV--QFDTTQNHFLAVGE 605 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~-------------~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 605 (945)
-|+.|- |.++++-+. ++.|..|... -.+. +..+.-... .+.-+ +|.|-++.|+.|..
T Consensus 255 DCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccC
Confidence 333332 567777664 7799999872 1111 112222211 23444 55677899999999
Q ss_pred CCcEEEEECCCCeeE--EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 606 DSQIKFWDMDNVNIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 606 dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.|.|++||++..++. .++..+.....|...+|+.||.+|+..++|++|.-||..
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999987652 233333444579999999999999999999999999863
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=186.98 Aligned_cols=253 Identities=13% Similarity=0.141 Sum_probs=193.3
Q ss_pred EEEEEEcC-------CCCEEEEEECCCcEEEEEccCCcccccce------------------eeccccccEEEEEEecCC
Q 002264 409 VSRVAWSP-------DGNYVGVAFTKHLIQLYSYAGSNDLRQHS------------------QIDAHVGAVNDLAFAYPN 463 (945)
Q Consensus 409 V~~i~~s~-------~g~~las~~~dg~i~vwd~~~~~~~~~~~------------------~~~~h~~~v~~l~~s~~~ 463 (945)
..|++|-. -|+|+|.|+.|..|.|||++-...+.+.. .-.+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 37899999999999999986432221111 123799999999999887
Q ss_pred CeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEE
Q 002264 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542 (945)
Q Consensus 464 ~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 542 (945)
+. +|+|||.|.+|++|| .+|++...+..|...|.++.|++. ...+|++|+.|++|.+.|.+........-.-.+.|-
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 76 899999999999999 999999999999999999999987 458999999999999999985332222112234688
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeE
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
.++|.|.....+.++. .+|.++-+|++.. +++.++..|.. .|.+++++..- .++++++.|+.|++|++......
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998776666654 3899999999975 89999999988 89999998754 57888999999999998765443
Q ss_pred EEeecCCCCCCccEEEEcCCC-CEEEEEECCCcEEEEECCCCcccccc
Q 002264 621 TSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g-~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
......-..+...|.++.|+- -++|.|+..+.+++||+.+.....+.
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence 222211112245677777754 46788888889999999887444433
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=171.03 Aligned_cols=265 Identities=14% Similarity=0.228 Sum_probs=194.2
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g 418 (945)
.+|.+-|.|+.|.+-|++ +|+|+.|++|+|||.++...- |... .....|.+.|..|.|-+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~-------W~~T--------s~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGT-------WSCT--------SSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCc-------eEEe--------eeEEecCCcEEEEEecCcccc
Confidence 358899999999999997 999999999999997543321 1111 23567999999999976 59
Q ss_pred CEEEEEECCCcEEEEEccC------CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE----
Q 002264 419 NYVGVAFTKHLIQLYSYAG------SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---- 487 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~------~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~---- 487 (945)
+.+|+++.|+++.||.-.. +..-....++....+.|+++.|.|....+.+++++.||.+|||+ .+--.+
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999997521 11222233566788899999999987777999999999999999 443222
Q ss_pred --EEec-------CCCCCEEEEEeeecCC-ccEEEEEEcC-----CeEEEEEccCCCe----eEEecCCCCeEEEEEEcC
Q 002264 488 --FNFE-------GHEAPVYSICPHHKEN-IQFIFSTAID-----GKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSA 548 (945)
Q Consensus 488 --~~~~-------~~~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~ 548 (945)
..+. .+..+..|+.|+++.- ..+|+.|+.+ +.++||....... ...+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 2222 3566778888876532 2456666655 4789997766542 235667888999999999
Q ss_pred CC----CEEEEEeecCCCCceEEEEeCCCC--------------------ceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 549 DG----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 549 ~~----~~l~~~~~~~d~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
+- ..|++++ +|| |+||.++.. +.+..+.+|+. .+..+.|+-.|..|.+.|
T Consensus 234 n~Gr~y~~lAvA~----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 234 NIGRSYHLLAVAT----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTG 307 (361)
T ss_pred ccCCceeeEEEee----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecC
Confidence 53 3566665 377 999998731 12344566665 799999999999999999
Q ss_pred CCCcEEEEECCC---CeeEEEeecCC
Q 002264 605 EDSQIKFWDMDN---VNILTSTDAEG 627 (945)
Q Consensus 605 ~dg~i~iwd~~~---~~~~~~~~~~~ 627 (945)
.||.|++|...- .++...+...+
T Consensus 308 dDG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 308 DDGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CCceeeehhhhhhhhheeeeEEeccC
Confidence 999999998653 33444454443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=171.35 Aligned_cols=407 Identities=12% Similarity=0.107 Sum_probs=250.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
-.+|||+|+++|+++.- .+.|=|..+-+..+.+ .--..|..+.|..|... .+.....|+.|.+|+ ...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999765 6777787765443321 12456888999998875 566778899999999 77777778
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+.....++.+++|+|++. .+|.+...|-+|.+|.+.+..... +......+..++|+|||++.+.++.. |-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 888888999999988532 677778889999999998765543 33444567899999999999988751 111222233
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
.-.....++.+..... ..+.+.|+|||+.+++-.. +-.|+.|.. .-.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~--------------~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYER--------------GLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeee--------------ccceeEEEeccccceEEee
Confidence 2333445555554443 5677999999988775432 222222221 1157889999999999999
Q ss_pred ECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCC
Q 002264 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (945)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (945)
+.|+.+|+.+--+- .|-|+++--+.-.+.+..-..........+-.....+.|..
T Consensus 229 syD~~lrvlnh~tW------------------------k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~- 283 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW------------------------KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD- 283 (447)
T ss_pred ccchhhhhhceeee------------------------eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc-
Confidence 99999998765332 22221110000000000000000000000000000000000
Q ss_pred CccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeee
Q 002264 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATAS 807 (945)
Q Consensus 728 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~ 807 (945)
-...+|...+ . +|.+...
T Consensus 284 --------~~a~~~~~se------------------------~-------------------~YE~~~~----------- 301 (447)
T KOG4497|consen 284 --------LEAHIWEESE------------------------T-------------------IYEQQMT----------- 301 (447)
T ss_pred --------cccCccccch------------------------h-------------------hhhhhhc-----------
Confidence 0001111100 0 0000000
Q ss_pred eccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCC---CeEEEEeccCceEEEEecCCCCCeeEEEeecCC
Q 002264 808 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (945)
Q Consensus 808 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd---~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~ 884 (945)
.+.+ ..-++.+ ..+. ..-.+--++||+|..++|+-.| +.+-+||+...+....+. ...+|....|.| +
T Consensus 302 -pv~~---~~lkp~t-D~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~ 372 (447)
T KOG4497|consen 302 -PVKV---HKLKPPT-DFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-G 372 (447)
T ss_pred -ceee---ecccCCC-CCCC--cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-C
Confidence 0000 0000000 0111 3445778999999999999986 459999999877766654 567899999999 7
Q ss_pred CceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCce
Q 002264 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (945)
Q Consensus 885 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~ 938 (945)
...|+.+.....+++|......++..-. ..-.|..++|.-+|..++-.+.|.-
T Consensus 373 ~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 373 RPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCce
Confidence 7777777777789999977655554432 3357999999999999999888863
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-17 Score=184.80 Aligned_cols=371 Identities=22% Similarity=0.367 Sum_probs=280.5
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc-eEEEecCCCC-CEEEEEeeecCCcc-EEEEEEc-CCeE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEA-PVYSICPHHKENIQ-FIFSTAI-DGKI 520 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i 520 (945)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+ ..+. .+..+..+.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3557999999999999999 788888999999999 5554 6677776443 77777774 44555 5555444 9999
Q ss_pred EEEEccC-CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-
Q 002264 521 KAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN- 598 (945)
Q Consensus 521 ~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 598 (945)
.+|+... ......+..+...+..++|+|+++.+++++. .++.+++|+...+..+..+.+|.. .+.+++++|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcce
Confidence 9999988 6777788889999999999999997777752 388999999999888888888766 799999999988
Q ss_pred EEEEEECCCcEEEEECCCCeeEE-EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCcccccc
Q 002264 599 HFLAVGEDSQIKFWDMDNVNILT-STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
.+++++.|+.|++||...+.... .+..+.. .. ...|+|++..+++++.|+.+++|+...........
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---------
Confidence 44445899999999988777777 4655543 32 22899999999999999999999997552100000
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEE
Q 002264 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l 837 (945)
. +|...+.++.|.|++..+++++.|+.+.+|+...... ..... ...|...+..+
T Consensus 281 ~---~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~ 334 (466)
T COG2319 281 S---GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSL 334 (466)
T ss_pred e---cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEE
Confidence 0 1556788889999888888888888889996533210 00000 01156678888
Q ss_pred eecCCCceEEec-C-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEE-eecCceEEEEecccceEEEEecCC
Q 002264 838 ALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEVKSKLKGH 914 (945)
Q Consensus 838 ~~s~dg~~la~~-s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~las-g~~dg~v~vwd~~~~~~~~~l~~h 914 (945)
.+++++..++.+ . ++.+.+|++.............. +..+.+++ + ..++. +..++.+.+|+............+
T Consensus 335 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (466)
T COG2319 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411 (466)
T ss_pred EECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCC
Confidence 884343555555 4 77799999988773333332222 89999998 7 55555 889999999999998887777655
Q ss_pred CcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 915 QKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 915 ~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
...+....+++++..+++++.++.+++|+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 478999999999999999999999999986
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=182.73 Aligned_cols=290 Identities=12% Similarity=0.150 Sum_probs=216.6
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE-EEEEECCCcEEEEEccCCc-cccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY-VGVAFTKHLIQLYSYAGSN-DLRQ 443 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~-las~~~dg~i~vwd~~~~~-~~~~ 443 (945)
..+++|||+...+.... .+-......+.++.|+....+ +|+.+.|..|++|.-.... .+..
T Consensus 11 gd~~kl~D~s~~~~~~~-----------------~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE-----------------YVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccc-----------------cccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 45799999876544321 001112334999999987642 3344567889999754321 1111
Q ss_pred ceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEE
Q 002264 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (945)
Q Consensus 444 ~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 522 (945)
.....+. .-.|++...... ++++||..+.|+||| ....+.+.+++|...|+++.++.. ..+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEE
Confidence 1122222 223333333334 899999999999999 555556778999999999998764 479999999999999
Q ss_pred EEccCCCeeEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC-CEE
Q 002264 523 WLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHF 600 (945)
Q Consensus 523 wd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 600 (945)
..+.++.....+... +..+.-+.|++..+.+++... .+|.|.+||.....++..+...+..+...++|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999988877777666 446779999999888776554 289999999999888888776666688889999965 567
Q ss_pred EEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcc
Q 002264 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (945)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i 680 (945)
++.|.|..|++||.........+... + +...++|+++|.+|+.|...|.|..||++.....+.....|.. .|
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~-~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-----sV 296 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS-H--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-----SV 296 (673)
T ss_pred EEecccceEEEeecccccccceeeec-C--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-----ce
Confidence 77899999999999987777776553 2 7899999999999999999999999999988777777766554 48
Q ss_pred eeeeecccc
Q 002264 681 ESVALKVSA 689 (945)
Q Consensus 681 ~~v~~s~~g 689 (945)
++++|-|.-
T Consensus 297 t~vafq~s~ 305 (673)
T KOG4378|consen 297 TRVAFQPSP 305 (673)
T ss_pred eEEEeeecc
Confidence 899998764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=173.66 Aligned_cols=283 Identities=11% Similarity=0.124 Sum_probs=201.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCe------------eEEEeecCCCCCCccEEEEc-------CCCCEEEEEE
Q 002264 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------------ILTSTDAEGGLPNLPRLRFS-------KEGNLLAVTT 648 (945)
Q Consensus 588 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~v~~s-------p~g~~l~~~~ 648 (945)
...+.|+|||..|++-+.|..+.+|++...- ....+.... ...|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e-g~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE-GETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEecc-CCEEEEEEeeeccccCCCccceeeecc
Confidence 4558899999999999999999999985311 111111111 1256777775 5778999999
Q ss_pred CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCC
Q 002264 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (945)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (945)
.+.-|++||.-+| +....+.......--....+++|+|||..|++|..
T Consensus 131 r~~PIh~wdaftG-~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk------------------------------- 178 (406)
T KOG2919|consen 131 RDQPIHLWDAFTG-KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK------------------------------- 178 (406)
T ss_pred ccCceeeeecccc-ccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-------------------------------
Confidence 9999999999988 33333333222111223567899999999875554
Q ss_pred ccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCC-eEEEeeecCeEEEEeecCCCCCCCCceeee
Q 002264 729 RTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATAS 807 (945)
Q Consensus 729 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~ 807 (945)
..|+++++......-........+..+..+-+.+++|+|-.. .++.++-...+-||.-
T Consensus 179 -------rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~-------------- 237 (406)
T KOG2919|consen 179 -------RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND-------------- 237 (406)
T ss_pred -------ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec--------------
Confidence 778888875422222222222222344567889999999655 6677766767766641
Q ss_pred eccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccC-ceEEEEecCCCC-CeeEEEe--e
Q 002264 808 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTTFMSPPP-ASTFLAF--H 881 (945)
Q Consensus 808 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~-~~~~~~~~~h~~-~i~~l~~--s 881 (945)
.++.++.. +-+ |.+.|+.++|.+||+.|.+|+ +.+|..||++. +.++..+..|.+ .-..|.| .
T Consensus 238 --------~~~~pl~l-lgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld 306 (406)
T KOG2919|consen 238 --------DGRRPLQL-LGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLD 306 (406)
T ss_pred --------CCCCceee-ecc--cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecC
Confidence 22222222 334 999999999999999999998 78999999984 556777777766 3334444 5
Q ss_pred cCCCceEEEeecCceEEEEeccc-ceEEEEecCCCcceeEEEecCCcceeeeecCC
Q 002264 882 PQDNNIIAIGTEDSTIHIYNVRV-DEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 882 ~~~~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
| ++++||+|+.||.|++||+++ |..+..+..|+..|..++++|--.+++|++..
T Consensus 307 ~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 307 P-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred C-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 7 889999999999999999998 77788888899999999999998888877653
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=170.08 Aligned_cols=287 Identities=14% Similarity=0.197 Sum_probs=208.8
Q ss_pred EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc-------CCCC
Q 002264 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-------PDGN 419 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s-------~~g~ 419 (945)
.-.+.|||||.. +.+-+.|..+.+|++...-.-........ .+.+..+-.-....|...+|= |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~~------~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPLN------FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCccc------cccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 456899999995 67778899999999753211100000000 000000011123567777774 6778
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeecccccc---EEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceE--EEe--
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGA---VNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKL--FNF-- 490 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~---v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~--~~~-- 490 (945)
++|+.+.+.-|++||.-+|+.......+ .|... -.+++|+|||. .|+. +....|+++| ..|+.- ...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhhh
Confidence 9999999999999999999765433222 35443 45799999999 5664 5588999999 455432 111
Q ss_pred ---cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 491 ---EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 491 ---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
.+..+.+.+++|+|. +...++.|+...++-||.-........+-+|.+.|+.+.|.++|+.|+++.. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 233677899999987 4578999999999999998888899999999999999999999999999986 577899
Q ss_pred EEeCCC-CceeeEeccccCcceEE--EEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCE
Q 002264 568 EWNESE-GTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 568 iwd~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~ 643 (945)
.||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+.+ +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999986 44555666554422222 45578899999999999999999998 776777666544 8999999999888
Q ss_pred EEEEECC
Q 002264 644 LAVTTAD 650 (945)
Q Consensus 644 l~~~~~d 650 (945)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=183.26 Aligned_cols=256 Identities=14% Similarity=0.214 Sum_probs=184.6
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~ 485 (945)
.|..++|-|||..|+.+..+ .+.+||...|..+. ++++|...|++++|+.||+ .|+||+.|+.|.+|+ ..|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccccce
Confidence 89999999999998887544 69999999998777 7889999999999999999 899999999999999 4443
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
. .+ .|.+.|.|+.|+|-. +.|++++-. ..-+|..+...... ......+.+++|..||.+++.+-. +|+
T Consensus 88 L--kY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~----nGT 155 (1081)
T KOG1538|consen 88 L--KY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMF----NGT 155 (1081)
T ss_pred e--ee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEecc----Cce
Confidence 3 33 489999999998864 677777643 34568544322111 122347889999999999999875 889
Q ss_pred EEEEeCCCCceeeEe--ccccCcceEEEEEcCCC-----CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 566 LVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQ-----NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 566 i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|.+-+-. ++....+ ++..+.++.+++|+|.. ..+++..-..++.++.+. |+.+..-..-+- .-.|+.+.
T Consensus 156 IsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~F--dP~CisYf 231 (1081)
T KOG1538|consen 156 ISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNF--DPCCISYF 231 (1081)
T ss_pred EEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCC--Cchhheec
Confidence 9887643 3333333 34445589999999864 456677777778888774 333332111111 34789999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccce
Q 002264 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
++|.++..|+.|+.+.+|.-+ | -.+-++ .....+|..++..|+++.+
T Consensus 232 ~NGEy~LiGGsdk~L~~fTR~-G-vrLGTv-----g~~D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQLSLFTRD-G-VRLGTV-----GEQDSWIWTVQAKPNSQYV 278 (1081)
T ss_pred cCCcEEEEccCCCceEEEeec-C-eEEeec-----cccceeEEEEEEccCCceE
Confidence 999999999999999999653 2 111111 1133467777777776655
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=179.82 Aligned_cols=293 Identities=12% Similarity=0.112 Sum_probs=215.4
Q ss_pred eeecCCCCc--cccCCCCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccC
Q 002264 318 VTYSSSRHQ--TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS 394 (945)
Q Consensus 318 v~~~~~~~~--~~~~~~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 394 (945)
+-+...++. +|++.+........-+ -.-.|..+.|+......+|+-+.|..|++|.-. |+.. . +.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~-~--Vp-------- 72 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTP-E--VP-------- 72 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEeccc-CCCC-c--cc--------
Confidence 334444444 8888776655544433 223499999998774333444557788999743 3211 0 00
Q ss_pred cccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 395 LPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 395 ~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
.. ....+. .-.|++......|+++|+..+.|+|||++..-+.+ .+.+|+..|+++.++-... ++++++..
T Consensus 73 --~~-~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De--yiAsvs~g 142 (673)
T KOG4378|consen 73 --RV-RKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE--YIASVSDG 142 (673)
T ss_pred --ee-eccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc--eeEEeccC
Confidence 00 112222 33444444455899999999999999998544444 6789999999999999888 89999999
Q ss_pred CcEEEEe-CCCceEEEecCCCC-CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCCCeEEEEEEcCCCC
Q 002264 475 KLIKVWE-LSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGS 551 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~ 551 (945)
|.|.|.. .++.....|....+ .|.-+.+++.. ..+|.+++.+|.|.+||+....+.+.+ ..|..+...++|+|...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne 221 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE 221 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc
Confidence 9999999 77777777765433 45678888875 367888999999999999887777654 45777889999999665
Q ss_pred -EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCC
Q 002264 552 -RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGL 629 (945)
Q Consensus 552 -~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~ 629 (945)
.|++.|. |..|.+||.+..+....+...+ +...++|+++|.+|++|...|.|+.||++. ..++..+..|..
T Consensus 222 ~l~vsVG~----Dkki~~yD~~s~~s~~~l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~- 294 (673)
T KOG4378|consen 222 ALLVSVGY----DKKINIYDIRSQASTDRLTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA- 294 (673)
T ss_pred ceEEEecc----cceEEEeecccccccceeeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-
Confidence 5567776 8999999999877766665433 678899999999999999999999999986 557777777655
Q ss_pred CCccEEEEcCCC
Q 002264 630 PNLPRLRFSKEG 641 (945)
Q Consensus 630 ~~v~~v~~sp~g 641 (945)
.|++++|-|..
T Consensus 295 -sVt~vafq~s~ 305 (673)
T KOG4378|consen 295 -SVTRVAFQPSP 305 (673)
T ss_pred -ceeEEEeeecc
Confidence 79999998864
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-17 Score=183.23 Aligned_cols=371 Identities=25% Similarity=0.396 Sum_probs=269.9
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC-cccccccccccccccCcccccccccCCC-ccEEEEEE-c
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAW-S 415 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~-s 415 (945)
....|...|.++.|.+.+. .++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEEC
Confidence 4456899999999999998 48888889999999998775 221 133322 46777777 8
Q ss_pred CCCC-EEEEEEC-CCcEEEEEccC-CcccccceeeccccccEEEEEEecCCCeeEEEEEeC-CCcEEEEe-CCCceEEEe
Q 002264 416 PDGN-YVGVAFT-KHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 416 ~~g~-~las~~~-dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-d~~i~vwd-~~~~~~~~~ 490 (945)
+++. .++..+. |+.+.+|+... ..... .+..|...|.+++|+|++. .+++++. |+.+++|+ ..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999987 43333 5778999999999999999 7788875 99999999 667888899
Q ss_pred cCCCCCEEEEEeeecCCcc-EEEEEEcCCeEEEEEccCCCeeE-EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 491 EGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
.+|...|.+++|++ ++. .+++++.|+.|++||...+.... .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 99999999999985 445 55555999999999888666666 466666654 3389999988886664 899999
Q ss_pred EeCCCCce-eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 569 WNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 569 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred eeecCCCcEEEEEecCC-ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 99987664 44444553 47888999998888888888899999999888776666522223368889884343566665
Q ss_pred -ECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCC
Q 002264 648 -TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (945)
Q Consensus 648 -~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (945)
..|+.+.+|+..... ......... .+..+.+.+ . ...
T Consensus 347 ~~~d~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~-~-~~~--------------------------------- 384 (466)
T COG2319 347 GSDDGTIRLWDLRTGK-PLKTLEGHS------NVLSVSFSP-D-GRV--------------------------------- 384 (466)
T ss_pred ecCCCcEEeeecCCCc-eeEEecCCc------eEEEEEECC-C-CCE---------------------------------
Confidence 678899999998763 111111111 144555554 3 211
Q ss_pred CCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeec
Q 002264 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (945)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~ 794 (945)
...+..++.+.+|+........... . +...+....+++++..++.++.++.+++|++.
T Consensus 385 --~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 385 --VSSGSTDGTVRLWDLSTGSLLRNLD-----G---HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred --EEEecCCCceEEEecccCeeeeecc-----C---CCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 0125666889999987422211111 1 11678899999999999998999999999753
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-19 Score=174.69 Aligned_cols=306 Identities=12% Similarity=0.087 Sum_probs=219.3
Q ss_pred EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC----CeeEEecCCCCeEEEEEEcCC-CCEEEEEeecCC
Q 002264 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKD 561 (945)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~d 561 (945)
....+-+..+|++++|+|..+-+++++|..-|.|-+||+.+. .....+..|..+|.++.|+|. ...+++.+.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy--- 255 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY--- 255 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc---
Confidence 344556788999999999988789999999999999999633 334567788889999999994 456777776
Q ss_pred CCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee-EEEeecCCCCCCccEEEEcC
Q 002264 562 GDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~sp 639 (945)
||+|++-|+..+.....+.... ...+..+.|+.+...++++..=|.+.+||++++.. ...+..|.. .|++++++|
T Consensus 256 -DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP 332 (498)
T KOG4328|consen 256 -DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNP 332 (498)
T ss_pred -CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCC
Confidence 9999999998765443333311 22466678888888888988888999999987554 555555544 899999999
Q ss_pred -CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCC
Q 002264 640 -EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (945)
Q Consensus 640 -~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (945)
...+||+++.|++.+|||++.-.. ... |
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~-------K~s-------------p------------------------------- 361 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRG-------KAS-------------P------------------------------- 361 (498)
T ss_pred CCchheeecccCcceeeeehhhhcC-------CCC-------------c-------------------------------
Confidence 567899999999999999964310 000 0
Q ss_pred CCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCC
Q 002264 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (945)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~ 798 (945)
.+..+ .|...|.+..|||.|..|++.+.|..|+|||..-
T Consensus 362 --------------------~lst~------------------~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--- 400 (498)
T KOG4328|consen 362 --------------------FLSTL------------------PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--- 400 (498)
T ss_pred --------------------ceecc------------------cccceeeeeEEcCCCCceEeeccCCceEEeeccc---
Confidence 00011 1888899999999988899999999999998520
Q ss_pred CCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCC-Cee
Q 002264 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-AST 876 (945)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~-~i~ 876 (945)
+.-|+...+.+......+ .|- .....+|.||..++++|. -..|-|+|-..++.+..+-.... .|.
T Consensus 401 -----------~sa~~~p~~~I~Hn~~t~-Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 401 -----------ISAKDEPLGTIPHNNRTG-RWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred -----------ccccCCccceeeccCccc-ccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence 111233333322221111 011 133468999999999998 67799999988887777644333 455
Q ss_pred E-EEeecCCCc-eEEEeecCceEEEEeccc
Q 002264 877 F-LAFHPQDNN-IIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 877 ~-l~~s~~~~~-~lasg~~dg~v~vwd~~~ 904 (945)
+ ..|+| -+. ++|-|+..|.|+||--+.
T Consensus 468 ~vn~~HP-~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 468 SVNEFHP-MRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cceeecc-cccceeccCCccceEEEEecCC
Confidence 5 47999 565 666666778999887543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-19 Score=167.98 Aligned_cols=251 Identities=18% Similarity=0.241 Sum_probs=183.3
Q ss_pred ccccCCCccEEEEEEcC-----CCCEEEEEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCC--eeEEEE
Q 002264 400 SIFKDVPISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNK--LLCVVT 470 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~-----~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~--~~~l~s 470 (945)
++..+|..+|..++|++ .-..+|+++. ..+.+|+......++.+..+. .|......++|+-+.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45678999999999986 2345666654 468888876544333332332 4778889999987543 348899
Q ss_pred EeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec---CCCCeEEEEEE
Q 002264 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLY 546 (945)
Q Consensus 471 ~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~ 546 (945)
||.-|.|+|.| .++++...+.+|...|+.+.++|.. .+++++++.|.+|++|++++..++..+. +|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999 9999999999999999999999974 4899999999999999999999888764 57779999999
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec----------------------------cccCcceEEEEEcCCCC
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA----------------------------GFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~ 598 (945)
+++|.+++++|. |..|.+|++...+....+. .|.. .|.|+.|- |+
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw~--gd 262 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRWF--GD 262 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHHH--hh
Confidence 999999999997 9999999998432211111 0111 22333332 57
Q ss_pred EEEEEECCCcEEEEECC-CCe-------------eEEEeecCCCCCCccE--EEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 599 HFLAVGEDSQIKFWDMD-NVN-------------ILTSTDAEGGLPNLPR--LRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~-~~~-------------~~~~~~~~~~~~~v~~--v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++++-+-++.|..|... -++ .+..++.+.. .|+- .+|.|-+++||.|...|.|.+||++..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c--~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC--DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc--ceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 88898889999999872 111 1222222221 3333 455666788888888888888888765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=174.74 Aligned_cols=479 Identities=13% Similarity=0.095 Sum_probs=278.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEE------ecCCCeeEEEEEeCCCcE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~------s~~~~~~~l~s~s~d~~i 477 (945)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.+ .... .-....|....+ ...+..-.|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~---~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA---KLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh---hCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 477788899999888877777555444444554322 2111 101111111111 111111267888899999
Q ss_pred EEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 478 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.+.+..++.-..+..|.+.+.+-.|+| +|.-|+++++||.|++|. +++-...++......|.|++|.|+...++.+.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999988888888999999999999987 567799999999999997 44555555566677999999999998888774
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
.+.+.+=.+.....+.....|.+ .+-++.|++..+.+++||+|-..++||.. |..+..-..|.+ +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 56787777777777777888877 89999999999999999999999999975 444444444544 8999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC
Q 002264 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
+|+ +.++.++.. ++|+=..+ .+.|..++|++||+.++.|.+.+..-+.+.-.
T Consensus 236 npd-~~~~v~S~n-t~R~~~p~-----------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie--------- 287 (737)
T KOG1524|consen 236 NPE-KDYLLWSYN-TARFSSPR-----------------VGSIFNLSWSADGTQATCGTSTGQLIVAYAIE--------- 287 (737)
T ss_pred ccc-cceeeeeee-eeeecCCC-----------------ccceEEEEEcCCCceeeccccCceEEEeeeeh---------
Confidence 999 666666653 55532222 23578899999999998877765432211100
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecC--
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR-- 795 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~-- 795 (945)
....-+..-++......|.+-++.. +....+. ...+|...+..- + +|+++.+. .+++|.-..
T Consensus 288 ---q~l~~~n~~~t~~~r~~I~vrdV~~----~v~d~LE------~p~rv~k~sL~Y-~-hLvvaTs~-qvyiys~knwn 351 (737)
T KOG1524|consen 288 ---QQLVSGNLKATSKSRKSITVRDVAT----GVQDILE------FPQRVVKFSLGY-G-HLVVATSL-QVYIYSEKNWN 351 (737)
T ss_pred ---hhhhhccceeEeeccceEEeehhhh----hHHHHhh------Cccceeeeeece-e-EEEEEecc-EEEEEecCCcc
Confidence 0000111112222334444444442 1112222 223444444321 1 23322221 333332110
Q ss_pred ---------CCCC----CCCceeee--eccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCe-EEEE
Q 002264 796 ---------NEQN----PSGKATAS--AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGK-ISLF 857 (945)
Q Consensus 796 ---------~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~-i~iw 857 (945)
..++ ........ .++.+|...........+++. .....+.-..|-....|+.-. |.+ +.+|
T Consensus 352 tpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~-~~dlL~~rtlsLandtLaird~ad~kvlhlF 430 (737)
T KOG1524|consen 352 TPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGS-QIDLLTWRTLSLANDTLAIRDNADPKVLHLF 430 (737)
T ss_pred CcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCc-ccccccceeeecccceEEeecCCCCeeEEec
Confidence 0000 00000000 012222222222222223320 011111112222333455543 444 7888
Q ss_pred ec-cCceEEEE--ecCCCCCeeEEEeec---CCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceee
Q 002264 858 NM-MTFKVMTT--FMSPPPASTFLAFHP---QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILV 931 (945)
Q Consensus 858 d~-~~~~~~~~--~~~h~~~i~~l~~s~---~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 931 (945)
|. .+|+.... +-.|...|..++... .+.+.+|.-..++.++|-.+.+......+---...|..++|+...+. +
T Consensus 431 d~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndttNi-L 509 (737)
T KOG1524|consen 431 DLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTNI-L 509 (737)
T ss_pred cCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhccccce-e
Confidence 87 66655322 112555565555532 15567887888888888776643222222223345788999966554 4
Q ss_pred eecCCceEEEEec
Q 002264 932 SSGADAQVTLCVE 944 (945)
Q Consensus 932 s~~~Dg~i~vWdl 944 (945)
+|-.|+++.||=.
T Consensus 510 cglqDt~fsVWy~ 522 (737)
T KOG1524|consen 510 CGLQDTCFSVWYY 522 (737)
T ss_pred eeeccceEEEEEc
Confidence 5888999999954
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=172.46 Aligned_cols=173 Identities=23% Similarity=0.365 Sum_probs=144.2
Q ss_pred cceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 335 ~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
..+++++. |.++=++++|||--.--|++|..-+.|++|...+|.-... ..-+.+|+..|..++
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQ 264 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhhc
Confidence 45566666 9999999999994222388998889999999988765432 133677999999999
Q ss_pred EcCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe----CCCceEE
Q 002264 414 WSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE----LSGRKLF 488 (945)
Q Consensus 414 ~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd----~~~~~~~ 488 (945)
|||. ...+|+|+.||+|+|||++.+.....+ ..++|.+.|+.|.|+..-. +|++|+.||+++||| ..++++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence 9996 567899999999999999988543333 2478999999999998888 899999999999999 3467889
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 9999999999999999865 6888999999999999864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=168.96 Aligned_cols=248 Identities=16% Similarity=0.212 Sum_probs=189.7
Q ss_pred cEEEEEEcC-----CCCEEEEE---ECCCcEEEEEc-cCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 408 SVSRVAWSP-----DGNYVGVA---FTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 408 ~V~~i~~s~-----~g~~las~---~~dg~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
.|+.++|.. +.++||.. +..|-..+.-+ ++|+.-.....+.||+++|..++|+|-+.. .++|||.|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455566644 45666653 22333444433 234443444467799999999999998776 899999999999
Q ss_pred EEe-CCC-------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC
Q 002264 479 VWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (945)
Q Consensus 479 vwd-~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 550 (945)
||. ..+ +++..+.+|...|-.++|+|... +.|++++.|.+|.+|++.+++....+. |...|.+++|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 34678899999999999999865 789999999999999999999999887 88899999999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE---CCCcEEEEECCCCeeEEEeecCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
.++++++. |..|++||.++++.+..-.+|.+.....+.|-.++..+-+|- .+..+-+||..+-+.-..+..-.
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 99999985 999999999999999988888776666677878888444443 67889999987644322222222
Q ss_pred CCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCc
Q 002264 628 GLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGL 662 (945)
Q Consensus 628 ~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~ 662 (945)
..+.|.---|.+|.+++..++. |+.||-|.+.+..
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2335677778888888876654 8999999997764
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=167.70 Aligned_cols=234 Identities=13% Similarity=0.217 Sum_probs=186.3
Q ss_pred ccccCCCccEEEEEEcC-CCCEEEEEECCCcEEEEEccCCccc----ccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~-~g~~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
..+.||.++|..++|+| +...||+|+.|.+|.||.+..+... .....+.+|...|--++|+|...+ .|+|++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 45789999999999999 6778999999999999998755332 334478899999999999998877 88999999
Q ss_pred CcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC-eEEEEEEcCCCCE
Q 002264 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSR 552 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~ 552 (945)
.+|.+|| .+|+.+.++. |.+.|++++|+. ||.++++++.|..|++||.++++.+..-..|.+ .-..+.|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999 8999888888 999999999976 778999999999999999999988887766544 555667888888
Q ss_pred EEEEeecCCCCceEEEEeCCCCc---eeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCee-EEEeecCC
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEG 627 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~ 627 (945)
+++.|.++-.+.++-+||...-+ ....+... ..+---.+.++.+.++.+| .|+.|+-|.+....+ +..+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 77777777789999999977543 22333332 2355567889989888877 899999999977653 33333333
Q ss_pred CCCCccEEEEcCC
Q 002264 628 GLPNLPRLRFSKE 640 (945)
Q Consensus 628 ~~~~v~~v~~sp~ 640 (945)
...+-..+.|-|.
T Consensus 308 S~epQRG~g~mPK 320 (472)
T KOG0303|consen 308 SKEPQRGMGFMPK 320 (472)
T ss_pred cCCcccccccccc
Confidence 3345567777774
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=168.53 Aligned_cols=263 Identities=16% Similarity=0.202 Sum_probs=185.6
Q ss_pred CcceEEeecCCCcEEEEEEeCCCCe-EEEEEeCcCcEEEEEcCCCCccc-ccccccccccccCcccccccccCCCccEEE
Q 002264 334 PRTVAVSLHQGSTVISMDFHPSHQT-LLLVGSSNGEITLWELAMRDRLV-SKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fsp~g~~-llasgs~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
|..-.....|.+.|..+.-++-|+. +.|+=+..|.|.||++...-... ...+.+-+ ........+.+|...=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 4445566778889999999887643 45555778999999985422111 00011100 111122457899999999
Q ss_pred EEEcCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc--eE
Q 002264 412 VAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KL 487 (945)
Q Consensus 412 i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~--~~ 487 (945)
++|||- --.|++|.--+.|++|...+|.-..-...+.+|+..|-.++|||.... .|+|||-||+|+||| ..+. ..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 234778877788999999887644333356789999999999998777 899999999999999 6652 22
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC---CCeeEEecCCCCeEEEEEEcCCCCE-EEEEeecCCCC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~~d~~ 563 (945)
...+.|.+.|+.|.|+... .+|++|+.||+++|||++. ++.+..+..|..+|+++.|+|.... +++++ .|
T Consensus 296 ~~~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg----~D 369 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG----ED 369 (440)
T ss_pred eEeeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----CC
Confidence 3348899999999997643 4999999999999999986 4456688999999999999996554 44444 38
Q ss_pred ceEEEEeCCCCce----------------eeEecccc-CcceEEEEEcCCC-CEEEEEECCC
Q 002264 564 SFLVEWNESEGTI----------------KRTYAGFR-KKSNGVVQFDTTQ-NHFLAVGEDS 607 (945)
Q Consensus 564 ~~i~iwd~~~~~~----------------~~~~~~~~-~~~~~~~~~~~~~-~~l~~~~~dg 607 (945)
.+|.+||+..-.- .+.+..|. ...+..+.|+++- .++++.+.||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 9999999863211 11111221 1235567788764 4666666776
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-19 Score=175.22 Aligned_cols=263 Identities=13% Similarity=0.185 Sum_probs=187.2
Q ss_pred cEEEEEEeCC-------CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccC----cccccccccCCCccEEEEEE
Q 002264 346 TVISMDFHPS-------HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS----LPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 346 ~V~~v~fsp~-------g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~V~~i~~ 414 (945)
...|++|... |+ ++|.|+.|..|.|||+.-...+. ++-......+. .......-.+|+..|.+++|
T Consensus 175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~--P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL--PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc--cceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 3455555432 55 59999999999999986332221 00000000000 00011234579999999999
Q ss_pred cCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE-EEec
Q 002264 415 SPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FNFE 491 (945)
Q Consensus 415 s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~-~~~~ 491 (945)
+.. ...||+||.|.+|++||+.+|++.. ++..|.+.|.++.|.|.... +|++|+.|++|.+.| ...... ..++
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE
Confidence 985 5679999999999999999998877 66789999999999998776 899999999999999 532222 2222
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
..+.|-.++|.+... ..++++..||+|+-+|++.. ++.+++..|...|.++++++.-..+++.+. .++.+.+|+
T Consensus 328 -~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~ 402 (463)
T KOG0270|consen 328 -FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWK 402 (463)
T ss_pred -eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEe
Confidence 456788999988754 67888899999999999986 778899999999999999997766554433 499999999
Q ss_pred CCCCceeeEecc-ccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCCeeE
Q 002264 571 ESEGTIKRTYAG-FRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 571 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
+..-........ ..-....|.++.|+-. .++.||..+.+++||+.+...+
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 875443221111 1112356667777654 5566778888999999876554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=181.18 Aligned_cols=295 Identities=17% Similarity=0.224 Sum_probs=231.3
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--C
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~ 417 (945)
+-+|.+.|..|.|...|. +|++||.|..|.+||+..++... ....||...|..-.|-| +
T Consensus 138 L~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l------------------~f~SGH~~NvfQaKFiP~s~ 198 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKL------------------SFESGHCNNVFQAKFIPFSG 198 (559)
T ss_pred ccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccc------------------ccccccccchhhhhccCCCC
Confidence 345999999999999999 69999999999999999887653 23568999999999988 4
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe---cCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGH 493 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~---~~~ 493 (945)
.+-+++++.||.|++=.+.....+...+.+..|.++|..++.-|+... -|.|++.|+.+.-.| ..+.+...+ ..+
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccC
Confidence 567999999999999887655555444467789999999999999887 799999999999999 555433222 223
Q ss_pred CC---CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee------EEec------CCCCeEEEEEEcCCCCEEEEEee
Q 002264 494 EA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDYD------APGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 494 ~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~------~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
.. ..++++..|.+ ...+++++.|..+++||.+.-... ..+. .....|++++|+.++.-+++...
T Consensus 278 ~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 33 56788888874 368999999999999997653322 1111 12237999999988777776664
Q ss_pred cCCCCceEEEEeCCC--C----------cee-eEeccccCcc-eEEE-EEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 559 SKDGDSFLVEWNESE--G----------TIK-RTYAGFRKKS-NGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~--~----------~~~-~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
+-.|+++.... | ..+ +.+++|.+.. |..+ .|.|...++++|+.-|.|.||+-.+++.+..+
T Consensus 357 ----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 357 ----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred ----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence 77789885432 2 122 3377886632 4444 56888999999999999999999999999999
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+..+ -|+|+.-+|--.+||+.+-|..|+||...+.
T Consensus 433 egDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 433 EGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 88777 7999999999999999999999999988544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-17 Score=173.68 Aligned_cols=462 Identities=11% Similarity=0.090 Sum_probs=273.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-----
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~----- 417 (945)
|...-.++.|+|.| |+|-|+ ...|.+-|..+-+.+. .+.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44457889999999 688776 5688899988877663 36669999999999873
Q ss_pred -------CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC---CCeeEEEEEeCCCcEEEEe-CCCce
Q 002264 418 -------GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRK 486 (945)
Q Consensus 418 -------g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~~~l~s~s~d~~i~vwd-~~~~~ 486 (945)
.-.||++...|.|.+||...+..+. .+..|..++..++|-+. .++ +|+.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1257888889999999999876555 56778999999999763 323 566666688999999 99999
Q ss_pred EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC------CCeeEEecCC-CC--------------------
Q 002264 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVDYDAP-GH-------------------- 539 (945)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~-~~-------------------- 539 (945)
............|+.+.|-.. +.+...+..|.+.+-+.-. ....+.+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 888877777788888887643 5555555566666554321 1111111111 00
Q ss_pred -----eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC--CEEEEEECCCcEEEE
Q 002264 540 -----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (945)
Q Consensus 540 -----~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~iw 612 (945)
..-.++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..+++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0112456776665555554 66799999988877777665544 45556676654 678899999999999
Q ss_pred ECCCCe----------------eEEEeecCCCCCCccEEEEcCC-CCEEEEEECCCcEEEEECCCCccccccccCCcccc
Q 002264 613 DMDNVN----------------ILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (945)
Q Consensus 613 d~~~~~----------------~~~~~~~~~~~~~v~~v~~sp~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 675 (945)
-.+... ....+..-... .+...+..|. ...++.--.+|.+.+|.+.++........+.....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 766522 11122111111 1122223342 44555556688899999986622111111000000
Q ss_pred c-----c-----CcceeeeecccccceeccCCCCCccccccCCCCCCCccc--CCCCCccCCCCCccccCCCCCCccccc
Q 002264 676 L-----R-----TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN--GVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (945)
Q Consensus 676 ~-----~-----~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (945)
. . ....-+.++.||..- .+..+ ....+........ .+......---.++.|...|+|.++|+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~----sGs~~--~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHS----SGSTC--VRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCC----CCcee--eecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 0 0 001111222333110 00000 0001111000000 011111111235688999999999999
Q ss_pred ceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccc
Q 002264 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (945)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (945)
........+.. |.+.|.++.|....+.+ +.+.... .+........+.+-|..+|.....
T Consensus 455 st~~v~~~fsv--------ht~~VkgleW~g~sslv-Sfsys~~------------n~~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 455 STNAVAASFSV--------HTSLVKGLEWLGNSSLV-SFSYSHV------------NSASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred cchhhhhhhcc--------cccceeeeeeccceeEE-Eeeeccc------------cccccceeeeEEEEEccccccccc
Confidence 86544443333 88999999998777644 3332200 000001111233446666653332
Q ss_pred cccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceE
Q 002264 824 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV 864 (945)
Q Consensus 824 ~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~ 864 (945)
.-.......+|..+..|.-|+|++..- +.-+.+||+++..+
T Consensus 514 R~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 514 RGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred ccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchH
Confidence 211112678899999999999999998 66799999865443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-19 Score=196.89 Aligned_cols=281 Identities=12% Similarity=0.160 Sum_probs=209.9
Q ss_pred ceeecCCCCc-cccCCCCCc----ceEEeecCCCcEEEEEEeCCCCe---EEEEEeCcCcEEEEEcCCCCcccccccccc
Q 002264 317 EVTYSSSRHQ-TWSLDDLPR----TVAVSLHQGSTVISMDFHPSHQT---LLLVGSSNGEITLWELAMRDRLVSKPFKIW 388 (945)
Q Consensus 317 ~v~~~~~~~~-~~~~~~~~~----~~~~~~~h~~~V~~v~fsp~g~~---llasgs~dg~i~iwd~~~~~~~~~~~~~~~ 388 (945)
+..|+..... +|.++.... .....+.-...-+.++|.+.|.. ++|.|..||.|.+||...- +......
T Consensus 32 D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~~-- 107 (1049)
T KOG0307|consen 32 DASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASEE-- 107 (1049)
T ss_pred ccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcchH--
Confidence 3344333333 555553332 24445556678999999998875 6999999999999998652 1100000
Q ss_pred cccccCcccccccccCCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeE
Q 002264 389 DMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467 (945)
Q Consensus 389 ~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~ 467 (945)
.......|++.|..+.|++.+. +||+|+.||.|.|||+..-+...... -..-.+.|.+++|+..-.. +
T Consensus 108 ---------~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-I 176 (1049)
T KOG0307|consen 108 ---------VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-I 176 (1049)
T ss_pred ---------HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-H
Confidence 1123567999999999999654 99999999999999998754433111 1235678999999987766 8
Q ss_pred EEEEeCCCcEEEEe-CCCceEEEecCCCC--CEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCe-eEEecCCCCe
Q 002264 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGS-RVDYDAPGHW 540 (945)
Q Consensus 468 l~s~s~d~~i~vwd-~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~-~~~~~~~~~~ 540 (945)
|++++.+|.+.||| ...+.+..+..+.. .+..+.|+|+.- ..+++++.|. .|.+||++.... ...+..|...
T Consensus 177 LAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G 255 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG 255 (1049)
T ss_pred hhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccc
Confidence 99999999999999 66677777766544 478899999865 4455555543 599999887544 4466789999
Q ss_pred EEEEEEcCCC-CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCCe
Q 002264 541 CTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 541 i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 618 (945)
|.++.|++.+ +++++++. |+.|.+|+..+++.+..+....+ .+..+.|+|... .+++++-||.|.||.+.+..
T Consensus 256 ilslsWc~~D~~lllSsgk----D~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGK----DNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeccCCCCchhhhcccC----CCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999976 77788874 99999999999999999987544 788899999775 77778899999999987654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-18 Score=165.55 Aligned_cols=316 Identities=14% Similarity=0.178 Sum_probs=211.4
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe---------eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---------RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
..++.++.|.... ...+++|+.|..|++|-+..... ...+..|...|+.+.|+|+|..|++++. ++
T Consensus 13 ~~pv~s~dfq~n~-~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D----~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNS-LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD----GG 87 (434)
T ss_pred CCceEEEEeccCc-ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC----Cc
Confidence 4578888887643 33899999999999998765322 1245668889999999999999999986 88
Q ss_pred eEEEEeCC--------C--------CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 565 FLVEWNES--------E--------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 565 ~i~iwd~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
.+.+|-.. + ....+.+.+|.. .+..++|+|++.++++++.|+.+++||+..|.....+..|.+
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 99999866 2 223455666665 788899999999999999999999999999999999988877
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (945)
.+..++|.|-++++++-+.|...+.+.+... +.... +.. ..+.
T Consensus 167 --yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~-~~~~~---------------~~~----~~m~--------------- 209 (434)
T KOG1009|consen 167 --YVQGVAWDPLNQYVASKSSDRHPEGFSAKLK-QVIKR---------------HGL----DIMP--------------- 209 (434)
T ss_pred --ccceeecchhhhhhhhhccCcccceeeeeee-eeeee---------------eee----eEee---------------
Confidence 8999999999999999999986777666433 11110 000 0000
Q ss_pred CCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee----
Q 002264 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS---- 784 (945)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~---- 784 (945)
+-....+.-+.+.+-- ... -..-...++|+|||..+++.+.
T Consensus 210 ---------------------~~~~~~~e~~s~rLfh---DeT-----------lksFFrRlsfTPdG~llvtPag~~~~ 254 (434)
T KOG1009|consen 210 ---------------------AKAFNEREGKSTRLFH---DET-----------LKSFFRRLSFTPDGSLLVTPAGLFKV 254 (434)
T ss_pred ---------------------ecccCCCCcceeeeee---cCc-----------hhhhhhhcccCCCCcEEEcccceeee
Confidence 0000001111111100 000 1223456788888887776543
Q ss_pred cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeec------------------CCCceE
Q 002264 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS------------------KNDSYV 846 (945)
Q Consensus 785 dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s------------------~dg~~l 846 (945)
.+.+.. ....+++-..-......+++ .......+.|+ |-+-.+
T Consensus 255 g~~~~~-----------------n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 255 GGGVFR-----------------NTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred CCceee-----------------ceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 122210 01111111111111111222 33334444443 334567
Q ss_pred EecCCCeEEEEeccCceEEEEecC-CCCCeeEEEeecCCCceEEEeecCceEEEEecccceE
Q 002264 847 MSATGGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 907 (945)
Q Consensus 847 a~~sd~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~ 907 (945)
|+++.+.|.|||.++..++..... |-..|+.++|++ ||..|+..+.||...+-.++..++
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEeecceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchhc
Confidence 888899999999998888776654 778899999999 999999999999888877776553
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-17 Score=166.62 Aligned_cols=272 Identities=15% Similarity=0.196 Sum_probs=189.0
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.|...|.|+.|+.+.. ++.+++ |..+.+|.-.+...... .+ +... .+. -..|-.+- +..=-.....+
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~--~~---~p~d--f~p---t~~h~~~r-s~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEV--AK---LPDD--FVP---TDMHLGGR-SSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEecc-CceEEEeecccchhhhh--hh---CCcc--cCC---cccccccc-ccCCCCCcceE
Confidence 4667888999999887 566655 55666654333222110 00 0000 000 00110000 00000123578
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~ 501 (945)
+.++.||.+.+.+-. ++.-+ ...+|.+.|.+-.|+|||. -|+|+|+||.|++|..+|-...++.....+|+|++
T Consensus 79 ~i~s~DGkf~il~k~-~rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 79 LICSNDGRFVILNKS-ARVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEEcCCceEEEeccc-chhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 888999999998743 33333 5778999999999999999 89999999999999988887777777888999999
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
|.|+.+ ..+++.+ +.+.+=-+.....+.....|++-|.++.|++..+.++++|. |-..++||.. |..+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccCC
Confidence 988654 4454443 45555566777778888999999999999999999999985 8899999964 55555555
Q ss_pred cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
.|.- ++++++|.|+ ..++.++.. +++ +..+ ..+.|..++||+||..+++|+..|.+.+=
T Consensus 225 ~~ey-~ITSva~npd-~~~~v~S~n-t~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 225 AEEY-AITSVAFNPE-KDYLLWSYN-TAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hhcc-ceeeeeeccc-cceeeeeee-eee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEe
Confidence 5554 8999999999 566655532 233 2222 23478999999999999999998887653
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=162.92 Aligned_cols=295 Identities=12% Similarity=0.136 Sum_probs=211.9
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccc-cccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
.++|.+-|.++.||.+|+ +||+|+.|..+++|++...-.... +++. ..-..|...|.|++|....
T Consensus 52 ~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEEccCC
Confidence 467999999999999998 699999999999999864321111 1111 1123466899999999999
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc---eEEEecCCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHE 494 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~---~~~~~~~~~ 494 (945)
+.|.+|+.+++|.+.|+++.+.+... .-....+.|+.+..+|..+ .|++.+.++.|.+|| .... .+..+....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 99999999999999999997766421 1112345999999999987 899999999999999 4332 223334455
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-------ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
...+++.|+|.. ..+|++.+..+-+-+||++....... +......-.++.|+|.|..+++.-. ...-.
T Consensus 195 ~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~ 269 (609)
T KOG4227|consen 195 KNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPL 269 (609)
T ss_pred ccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCE
Confidence 667888898874 47899999999999999887554321 1111223357889999999988754 44456
Q ss_pred EEeCCCCce-eeEeccccC-----cceEEEEEcCCCCEEEEEECCCcEEEEECCCCe-----------------------
Q 002264 568 EWNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN----------------------- 618 (945)
Q Consensus 568 iwd~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------------- 618 (945)
+||+.+.++ +..+..... ..+.+++|..+ ..+++|+.+-.|++|.+....
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 788877443 333331111 12455677655 348999999999999875311
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.+..+.+| ..-++.|.|+|...+|++.+-...++||...
T Consensus 349 ~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 12344444 4478999999999999999999999999763
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=158.20 Aligned_cols=284 Identities=17% Similarity=0.212 Sum_probs=198.1
Q ss_pred eEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccccc-CCCccEEEEEE
Q 002264 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAW 414 (945)
Q Consensus 337 ~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~i~~ 414 (945)
+.+.+ +|.+.|+|+.|-.+++ |.+|..-|.|++|++++.+.... +. .|...|+.+.-
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQS 64 (323)
T ss_pred CeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceee
Confidence 33433 5999999999999986 88999999999999998765421 33 46788999988
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-cEEEEe-C---------C
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVWE-L---------S 483 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-~i~vwd-~---------~ 483 (945)
-|+ ..|.+-+.|+.+.+|++..+..+. -|.-.+.++-|++.. ++..+... ..-.++ . -
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEE------Eeeeeccccccccce----eccCCCcchhheecCCcccchhhhhcc
Confidence 887 567788899999999998754332 355556666665431 11111111 111222 1 0
Q ss_pred CceEEE--e----cCCCCCEEEEEeeecCC-ccEEEEEEcCCeEEEEEccCCCeeE----------EecCCCCeEEEEEE
Q 002264 484 GRKLFN--F----EGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGHWCTTMLY 546 (945)
Q Consensus 484 ~~~~~~--~----~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~ 546 (945)
+..... . .+..+.+.+..+..... .-++++|-++|.+.+||+.++..+. ....+..++.++.+
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy 213 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY 213 (323)
T ss_pred CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence 111111 1 12334566665433222 2356778889999999999874443 33446668899998
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCC--ce-eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEG--TI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
.+.-..=++++. +..+..|.+... .+ +.......+..+..+.+-||++.++++|-|+.|+||+.++..++..+
T Consensus 214 as~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 214 ASSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred chhhcCCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 876655566654 667778877542 21 22222223335777899999999999999999999999999999999
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
..|.. .|++++|+|+...+|.++.|++|.+|++
T Consensus 290 kyHsa--gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSA--GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhc--ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 98864 8999999999999999999999999986
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=178.43 Aligned_cols=251 Identities=14% Similarity=0.176 Sum_probs=188.0
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEcc-----CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
.+..|...|..++|.|....|++|+.||++++|+++ ....+..+.++.+|.++|.|++..++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 466799999999999999999999999999999993 2334566778999999999999999999 899999999
Q ss_pred cEEEEe-C------CC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CCeEE
Q 002264 476 LIKVWE-L------SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCT 542 (945)
Q Consensus 476 ~i~vwd-~------~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~ 542 (945)
+|+.|+ . +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... ...-.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999994 1 11 2346778999999999998865 5699999999999998765544 222222 22234
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC------cceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
++.+-...-....++. ..+.-.+++.........+..... ..+..+..+|.+...+++..|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4444332211222111 022222333444433333332111 2356678889999999999999999999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.++.....+.. .++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 999988877654 8999999999999999999999999998655
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=185.67 Aligned_cols=280 Identities=17% Similarity=0.260 Sum_probs=215.0
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.++++|-..|+|++|...|.| +++|+.|..|+||...++.++.. ..||++.|+.++.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~ 243 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSN 243 (1113)
T ss_pred HHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchh
Confidence 346789999999999999996 99999999999999999888754 7899999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe----cC-
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EG- 492 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~- 492 (945)
..++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||..-..+... ..
T Consensus 244 n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 244 NTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFT 314 (1113)
T ss_pred hhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcc
Confidence 9999999999999999999997776 78899999999999985 3678899999999332211111 11
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeC
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~ 571 (945)
...-+.++.| ..++..+++++.|+.-..|.+.... .+...+.-+..+.|-. +.+++- .+..+.+|++
T Consensus 315 ~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl 382 (1113)
T KOG0644|consen 315 EKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNL 382 (1113)
T ss_pred cccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeeec
Confidence 1233444544 3355678999999998888554211 1111122222222322 333333 2778899999
Q ss_pred CCCceeeEeccccCcceEEEEEcCCCCEE-EEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+|...+...+|.. .+..+.++|-...+ .+++.||...|||+-.|.+++..... + ..+....||+||..++...+-
T Consensus 383 ~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~h 459 (1113)
T KOG0644|consen 383 YTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDH 459 (1113)
T ss_pred ccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCC
Confidence 99999999999887 78889999966544 56889999999999999888877643 3 367888999999999998888
Q ss_pred CcEEEEECCCC
Q 002264 651 NGFKILANAIG 661 (945)
Q Consensus 651 g~i~iw~~~~~ 661 (945)
|.+.|.....+
T Consensus 460 gql~i~g~gqs 470 (1113)
T KOG0644|consen 460 GQLYILGTGQS 470 (1113)
T ss_pred CceEEeccCCC
Confidence 99999876544
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-18 Score=175.70 Aligned_cols=267 Identities=14% Similarity=0.219 Sum_probs=192.6
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
...|.+.|+.++|.|... .|++++.||++.+|+++....-....+ .+...+.+|.++|.|+++++++.
T Consensus 290 l~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred eecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCce
Confidence 334999999999999988 599999999999999944221111111 12245889999999999999999
Q ss_pred EEEEEECCCcEEEEEccCCc-------ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC
Q 002264 420 YVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 492 (945)
.+.+|+.||+|+.|++.... .......+.||.+.|+.+++++... .|++++.||+++.|+..+....+|..
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~~ 435 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFGE 435 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccCC
Confidence 99999999999999664221 1112225779999999999999888 79999999999999933333344433
Q ss_pred CC--CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-------CCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 493 HE--APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 493 ~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
.. +.-.++.+..+ .-...++...-+.-.++++........+... ...+.-+.++|.+...+++.. +
T Consensus 436 ~~e~g~Plsvd~~ss-~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he----d 510 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSS-RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE----D 510 (577)
T ss_pred ccccCCcceEeeccc-hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc----C
Confidence 22 22334443221 1122222222333334444444444333221 125677889999988888875 8
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
+.|+++|..+++++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....+
T Consensus 511 ~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred Cceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 9999999999999999888877 8999999999999999999999999999877766555443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-17 Score=166.53 Aligned_cols=239 Identities=14% Similarity=0.153 Sum_probs=162.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+ -.+|...|.++.|-|....-+++||..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 458899999999999999999999999999999999876655543 248999999999999765558999999999999
Q ss_pred EeCCC-----------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE----------EecCCC
Q 002264 480 WELSG-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPG 538 (945)
Q Consensus 480 wd~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~ 538 (945)
+|.+. .....+..|...|..++..|.+ ...+.++++||+++-+|++....-. .+...-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99331 2345567788889988876643 2789999999999999998632111 111111
Q ss_pred CeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeCCCCceeeEeccccC------cceEEE-EEcCCCCEEEEEECCCcEE
Q 002264 539 HWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVV-QFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 539 ~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~l~~~~~dg~i~ 610 (945)
-...++.++|... +|++++. +...++||.+... ..+..... ....++ -|+|.+- ...+|.+
T Consensus 201 ielk~ltisp~rp~~laVGgs----dpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~- 269 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL- 269 (758)
T ss_pred heeeeeeecCCCCceEEecCC----Cchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCccccc-
Confidence 2567899999665 5555554 8889999964321 11111100 001111 1233210 1111111
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccc
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
... ...++-++|+|+|.-|.+.-....|+++|+..++.....
T Consensus 270 ---------~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 270 ---------DRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ---------ccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 000 013577899999988887777779999999877544433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-16 Score=142.78 Aligned_cols=280 Identities=18% Similarity=0.239 Sum_probs=194.2
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.|.+-+++|.+++ |+.|+.+|+|.+..+.+--.-.. .+..........+|.++|+.++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 5667789999995 89999999999998764211100 000111112357899999999998 55777775
Q ss_pred CCCcEEEEEccCCcc---cccce--eecccc-----ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC
Q 002264 426 TKHLIQLYSYAGSND---LRQHS--QIDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~---~~~~~--~~~~h~-----~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~ 494 (945)
||.|+-|....-.. .+... ....|. ..|+++-..|..+ -++.++.|+.++-|| .+|+..+++++|+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 11100 111232 3688999998877 455555799999999 9999999999999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC----------CCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
+.|.++.-... + ..+++|++||++|+||.++.+....+... +.+|.+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~~-~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNA-N-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeeccc-C-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 99999986332 2 46889999999999999999888765442 225555554 556888875 67
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC-CE
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NL 643 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~ 643 (945)
.+.+|.++..++...|.-.. .+..+.|.. ..+++++..+.+.-|.+ +|......+...+ .+.+..|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeee-ccEEEEeccCCcc--ceeeecccCCceEE
Confidence 89999999999888876543 466667764 57888888889999987 4555554544433 45555555433 34
Q ss_pred EEEEECCCcEEEE
Q 002264 644 LAVTTADNGFKIL 656 (945)
Q Consensus 644 l~~~~~dg~i~iw 656 (945)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455555566554
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=151.12 Aligned_cols=308 Identities=14% Similarity=0.138 Sum_probs=197.4
Q ss_pred eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcE
Q 002264 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (945)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 609 (945)
+.+.+..+...++++.|-.+++ |+++.. .|.+.+|++.+.+....++++....+..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3445567777899999988777 666653 8899999999999888888776667888888786 678888999999
Q ss_pred EEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC-cEEEEECCCCccccccccCCccccccCcceeeeeccc
Q 002264 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (945)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~ 688 (945)
.+|++..+..+..-.. .++++.|.+-. +...+... ..-.++-+...+ .....+ +.-.
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~-------g~~t------- 137 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDG-------GDTT------- 137 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhcc-------Cccc-------
Confidence 9999987655443322 34555554421 11111110 111111111100 000000 0000
Q ss_pred ccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceE
Q 002264 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (945)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 768 (945)
.+++-+-.. .+..+.+.
T Consensus 138 ------------------------------------------------qv~i~dd~~---------------~~Klgsvm 154 (323)
T KOG0322|consen 138 ------------------------------------------------QVQIADDSE---------------RSKLGSVM 154 (323)
T ss_pred ------------------------------------------------eeEccCchh---------------ccccCcee
Confidence 011111000 00223333
Q ss_pred EEEEec-CCC--eEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 769 RLLYTN-SAV--GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 769 ~l~~s~-dg~--~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
+..+.. +++ .++++..+|.+.+||+....... +......+...... |..+|.++.|.+.-..
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-------------~~~~~~kv~~~~as--h~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-------------QLPQSSKVESPNAS--HKQPVLSLDYASSCDR 219 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceee-------------ccccccccccchhh--ccCcceeeeechhhcC
Confidence 333221 232 24566678999999986542111 11111111111222 8999999999876555
Q ss_pred EEecC-CCeEEEEeccCc--eE--EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeE
Q 002264 846 VMSAT-GGKISLFNMMTF--KV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (945)
Q Consensus 846 la~~s-d~~i~iwd~~~~--~~--~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 920 (945)
=++|+ +.++..|+++.. .+ .....-....|..+.+-| |++++|+++.|+.||||..++.+.+..++.|.+.|.+
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNA 298 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeE
Confidence 56677 778999987642 22 122222345588899999 9999999999999999999999999999999999999
Q ss_pred EEecCCcceeeeecCCceEEEEec
Q 002264 921 LAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 921 l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++|+||...+|++|.|++|.+|+|
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999997
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=172.58 Aligned_cols=269 Identities=15% Similarity=0.204 Sum_probs=203.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|++.+. ..+...+.-...|+|++|+|...+++|.|..+|+|.+||+..+........ ......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------s~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------SALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-------------ccccccCC
Confidence 8888876 788889999999999999999988999999999999999988765311111 12245699
Q ss_pred ccEEEEEEcCCCC--EEEEEECCCcEEEEEccCCcccccceeec---------cccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 407 ISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 407 ~~V~~i~~s~~g~--~las~~~dg~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
.+|+.+.|-.+.. -+++++.||.|..|+++.-........+. .-...+++++|.+.... .|+.|+.+|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 9999999987544 49999999999999886543311110110 12236899999998776 789999999
Q ss_pred cEEEEe---CCCce------EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-CCCeeEEecCCCCeEEEEE
Q 002264 476 LIKVWE---LSGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 476 ~i~vwd---~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~ 545 (945)
.|.--+ .+... ...+..|.++|+++.++|-.. ..+++++ |.++++|... ...+...+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 988744 22222 345667899999999988754 4455555 9999999877 5566666777777899999
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCC--ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
|||-...++++.. ++|.+.+||+... .++.+.... ....+.+.|++.|+.+++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998877776653 6999999998753 344444333 33677788999999999999999999999864
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-17 Score=155.47 Aligned_cols=274 Identities=12% Similarity=0.150 Sum_probs=194.0
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CCCEEEEEECCCcEEEEEcc
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g~~las~~~dg~i~vwd~~ 436 (945)
.+|++-..|+|++||..+++.+. .+++|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58888889999999999988763 3778899999999987 46789999999999999999
Q ss_pred CCcccccceeecccc-ccEEEEEEecCCCeeEEEEEe----CCCcEEEEe-CCCce-EEEe-cCCCCCEEEEEeeecCCc
Q 002264 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG----DDKLIKVWE-LSGRK-LFNF-EGHEAPVYSICPHHKENI 508 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s----~d~~i~vwd-~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 508 (945)
+......+ .+.+|. .+..+++..-.++ ++++|. .|-.|.+|| ...+. +..+ ..|...|++++|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87655433 344555 5677777766666 677775 356799999 54443 4443 5799999999999984 5
Q ss_pred cEEEEEEcCCeEEEEEccCCCee---EEecCCCCeEEEEEEcCCC-CEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
++|++|+.||.|.+||+...... .....+...|.++.|..++ +.+.+.+. .....+|++..+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 89999999999999998765332 2333456679999999887 34555554 7789999999887655444321
Q ss_pred Cc---------ceEEE-EEcC-CCCEEEEEEC-CCcEEEEECC---CC---eeEEEeecCCCCCCccEEEEcCCCCEEEE
Q 002264 585 KK---------SNGVV-QFDT-TQNHFLAVGE-DSQIKFWDMD---NV---NILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 585 ~~---------~~~~~-~~~~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~v~~sp~g~~l~~ 646 (945)
-. .-..+ +.+| +...++.++. -|...++-+. ++ ..+..+.+ ++..-|.++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 00011 2223 3344454443 5666655443 23 23334433 23456889999989999999
Q ss_pred EECCCcEEEEECCC
Q 002264 647 TTADNGFKILANAI 660 (945)
Q Consensus 647 ~~~dg~i~iw~~~~ 660 (945)
|+.||.+.+|....
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998643
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-16 Score=144.68 Aligned_cols=284 Identities=14% Similarity=0.261 Sum_probs=203.8
Q ss_pred EEeecCCCcEEEEEEe--CCCCeEEEEEeC----cCcEEEEEcC--CCCcccccccccccccccCcccccccccCCCccE
Q 002264 338 AVSLHQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fs--p~g~~llasgs~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (945)
+....-.-.+.++.|| |+.++.||.||. .+.|.|-.+. +++.+.. .--.|.-++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCc
Confidence 4444555689999999 566667999874 2455555443 3333321 113588999
Q ss_pred EEEEEcCCC-----CEEEEEECCCcEEEEEccCCc-cccccee-----eccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 410 SRVAWSPDG-----NYVGVAFTKHLIQLYSYAGSN-DLRQHSQ-----IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 410 ~~i~~s~~g-----~~las~~~dg~i~vwd~~~~~-~~~~~~~-----~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
+.+.|.|+. ++||+++ ..+++|.+...+ .+..... -..+.+++++..|+.-... ++.++|-|-+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 999999986 3566654 369999987422 1111111 2246779999999986665 899999999999
Q ss_pred EEe-CCC---ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecCC--CCeEEEEEEcCC-C
Q 002264 479 VWE-LSG---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAP--GHWCTTMLYSAD-G 550 (945)
Q Consensus 479 vwd-~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~--~~~i~~~~~s~~-~ 550 (945)
||| .+| .....+..|...|+.++|... .-+.+++.|.||.||+||++..+... .++.+ ..+...++|++. -
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999 554 346778899999999999863 45789999999999999998755432 23322 347788899884 4
Q ss_pred CEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCC-CCEEEEEECCCcEEEEECCCCe------eEEE
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVN------ILTS 622 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~ 622 (945)
+++++... ....|.+.|++.. .++..+++|.. .|+.++|.|. ..+++++|.|..+.+||+...- ++..
T Consensus 256 nymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 256 NYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 56666554 3667999999875 57788889887 8999999996 4788999999999999997532 2222
Q ss_pred eecCCCCCCccEEEEcC-CCCEEEEEECC
Q 002264 623 TDAEGGLPNLPRLRFSK-EGNLLAVTTAD 650 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~sp-~g~~l~~~~~d 650 (945)
.. ..+.|+.+.|++ .+.+++.+...
T Consensus 332 y~---a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 332 YT---AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hh---ccceeeeeeecccCCCEEEEEecC
Confidence 22 234799999997 66788877643
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-16 Score=169.62 Aligned_cols=304 Identities=18% Similarity=0.327 Sum_probs=210.3
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC---CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
+-..+.|+|-.. .++++...-.|+||| ..++.+..|..+ ...|+.+++....|..++++++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456678888777 788888778999999 899988877654 44688888877778889999999999999953211
Q ss_pred CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCc
Q 002264 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (945)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 608 (945)
. | ....++++.. .-++. ..+..+ .-..+.|.....+|+++|+-..
T Consensus 1144 ~----------------~--~~~eLVTaw~------------~Ls~~----~~~~r~-~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 K----------------W--KKPELVTAWS------------SLSDQ----LPGARG-TGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred c----------------c--CCceeEEeec------------ccccc----CccCCC-CCeeeehhhhCCeEEecCCeeE
Confidence 0 0 1223443321 11111 111111 1234667777778888888899
Q ss_pred EEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
|+|||......+..+..... ..|+++.-+- .|+.+++|..||.|++||.+.....
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999999888888776543 3566665443 5799999999999999998754210
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccc-
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK- 766 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~- 766 (945)
.-|.+|.- |...
T Consensus 1245 ------------------------------------------------s~v~~~R~-------------------h~~~~ 1257 (1387)
T KOG1517|consen 1245 ------------------------------------------------SLVCVYRE-------------------HNDVE 1257 (1387)
T ss_pred ------------------------------------------------ccceeecc-------------------cCCcc
Confidence 11222221 3333
Q ss_pred -eEEEEEecCCCe-EEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 767 -VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 767 -v~~l~~s~dg~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
|..+.+.+.|-. |++++.+|.|++||+........-.. +.-|+ ..+..+++.++++..
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i-----v~~~~---------------yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI-----VAHWE---------------YGSALTALTVHEHAP 1317 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCccccccee-----eeccc---------------cCccceeeeeccCCC
Confidence 777778776654 99999999999999865311100000 00111 123589999999999
Q ss_pred eEEecCCCeEEEEeccCceEEEEecCC-------CCCeeEEEeecCCCceEEEeecCceEEEEecccce
Q 002264 845 YVMSATGGKISLFNMMTFKVMTTFMSP-------PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (945)
Q Consensus 845 ~la~~sd~~i~iwd~~~~~~~~~~~~h-------~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~ 906 (945)
.+|+|+.+.|+||++. |+.+..++.+ .+.+.|++|+| -.-++|+|+.|.+|.||.....+
T Consensus 1318 iiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1318 IIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 9999999899999986 4554554432 24589999999 88899999999999999877543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=159.30 Aligned_cols=247 Identities=13% Similarity=0.105 Sum_probs=166.6
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-- 416 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-- 416 (945)
.+.+|.+-|.|++|+.+|. +|++||.|-.+.|||....+.++ .+-+||...|.|+.|-|
T Consensus 45 eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh------------------sI~TgHtaNIFsvKFvP~t 105 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH------------------SISTGHTANIFSVKFVPYT 105 (758)
T ss_pred hhccccceecceeecCCCC-EEeecCCcceEEeecchhcceee------------------eeecccccceeEEeeeccC
Confidence 4557999999999999999 79999999999999998766654 34679999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCc-------ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceE
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKL 487 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~ 487 (945)
+.+.+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .|.++++||+|+-+| ... .+-
T Consensus 106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCC
Confidence 57789999999999999998522 12223356689999999999999965 899999999999999 331 111
Q ss_pred E---------EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 488 F---------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 488 ~---------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
. .+...--...|+.++|.. ..+|++|+.|-..++||.+....... ... . +.++|--
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~--s~~--~--~~~~pp~-------- 249 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFR--SDG--T--MNTCPPK-------- 249 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCC--CCc--c--ccCCCCc--------
Confidence 1 111222356788888874 48999999999999999643222111 100 0 0011100
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
..+.+..|-...-+..+-...+.-...+-+.|+|+|.-+++.-..-.|+++|+..++....+
T Consensus 250 ---~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 250 ---DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ---ccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 01111111111000000000000013556889999988877666678999999887655443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=153.54 Aligned_cols=291 Identities=14% Similarity=0.165 Sum_probs=193.6
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--CC-CeEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PG-HWCT 542 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~-~~i~ 542 (945)
.++++-..|.|++|| .+++.+..++++...++.+.|........+.+++.||+|++||++.......+.. +. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 677788899999999 8899999999999999999998754557899999999999999998776554433 32 3567
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce-eeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCe--
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN-- 618 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-- 618 (945)
+++.+-.++.+++++.-.+.+..+.+||++..+. +..+...+...|+++.|+|.. +.|++|+.||-|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667777777765444577899999998765 555544444489999999964 789999999999999987543
Q ss_pred --eEEEeecCCCCCCccEEEEcCCC-CEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccc-ccceec
Q 002264 619 --ILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS-ASSAVS 694 (945)
Q Consensus 619 --~~~~~~~~~~~~~v~~v~~sp~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~-g~~l~~ 694 (945)
++.++. +...|.++.|..++ +.|.+-+..++..+|+++.+.... .+........ .....+ -.+++-
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~-~~~~~~~~~~------d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET-WLENPDVSAD------DLRKEDNCDYVIN 271 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh-cccCccchhh------hHHhhhhhhheee
Confidence 222332 23368999999877 457788889999999998874222 1211100000 000000 001100
Q ss_pred cCCCCCccccccCCCCCCCcccCCCCCccCCCCCccc-cCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEe
Q 002264 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTV-DDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (945)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 773 (945)
+. ...+....+. ++.-++..++-+................ .+|..-|.++.|.
T Consensus 272 ~~-------------------------~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 272 EH-------------------------SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFD 325 (376)
T ss_pred cc-------------------------cCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhh
Confidence 00 0011122222 2223555555554322222222222222 3466778888898
Q ss_pred cCCCeEEEeeecCeEEEEee
Q 002264 774 NSAVGLLALGSNGVQKLWKW 793 (945)
Q Consensus 774 ~dg~~l~~~~~dg~i~lw~~ 793 (945)
..+..+.++|.||.+.+|..
T Consensus 326 ~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 326 VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccceeeccCCCceEEEEec
Confidence 88999999999999999975
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-15 Score=159.52 Aligned_cols=283 Identities=11% Similarity=0.130 Sum_probs=173.0
Q ss_pred EEEEEcCCeEEEEEccCCCe---eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCce--eeEecccc
Q 002264 511 IFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI--KRTYAGFR 584 (945)
Q Consensus 511 l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~--~~~~~~~~ 584 (945)
+++...++.|.+||+.+... ...+. .......++++|++++|++++. .++.|..|++. +++. ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~~~~~~~~-- 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALTFAAESPL-- 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceEEeeeecC--
Confidence 44457789999999964322 22332 2345678899999999988764 36789999986 3433 222221
Q ss_pred CcceEEEEEcCCCCEEEEEE-CCCcEEEEECCC-Ce---eEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEEC
Q 002264 585 KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILAN 658 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~---~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~ 658 (945)
......++++|+++++++++ .++.|.+|++.+ +. .+..+.. ......++++|+|+++++++ .++.|.+||+
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~---~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG---LEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC---CCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 12456799999999999887 588999999974 32 2222221 12467889999999886655 4689999999
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
.+...+..................++|+|+|++++ ++...+++|
T Consensus 156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly------------------------------------v~~~~~~~v 199 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY------------------------------------CVNELNSSV 199 (330)
T ss_pred CCCCcccccCCCceecCCCCCCceEEECCCCCEEE------------------------------------EEecCCCEE
Confidence 76422211000000000112245678888888775 233335888
Q ss_pred cccccceeec-CCcceee-ecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccC
Q 002264 739 KPWQLAEIVD-SGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (945)
Q Consensus 739 ~vw~~~~~~~-~~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 815 (945)
.+|++..... ......+ ..+....+......+.++|+|++++++.. ++.|.+|++..... ..
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~----~~----------- 264 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS----VL----------- 264 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC----eE-----------
Confidence 8898863110 0111111 11211112223456899999999988855 68999998753210 00
Q ss_pred CCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEecc
Q 002264 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM 860 (945)
Q Consensus 816 ~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~ 860 (945)
+...... -......++++|||++|++++ +++|.+|+++
T Consensus 265 ---~~~~~~~----~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 265 ---SFEGHQP----TETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ---EEeEEEe----ccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 0000000 012345789999999999887 6789999874
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=177.93 Aligned_cols=284 Identities=16% Similarity=0.241 Sum_probs=217.8
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i 653 (945)
.+.++.+.+|.+ .|.|+.|...|.++++|+.|..++||.++++.++....+|.. .|+.++.+.+..++++++.|..|
T Consensus 180 mk~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 180 MKNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCceE
Confidence 344566778877 799999999999999999999999999999999999887755 89999999999999999999999
Q ss_pred EEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccC
Q 002264 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (945)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (945)
++|.+.++ ..+..+.+|+. .|++++|+|- .+.+
T Consensus 257 rvWrl~~~-~pvsvLrghtg-----avtaiafsP~-----------------------------------------~sss 289 (1113)
T KOG0644|consen 257 RVWRLPDG-APVSVLRGHTG-----AVTAIAFSPR-----------------------------------------ASSS 289 (1113)
T ss_pred EEEecCCC-chHHHHhcccc-----ceeeeccCcc-----------------------------------------ccCC
Confidence 99999998 67777877765 5889999876 3566
Q ss_pred CCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccc
Q 002264 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (945)
Q Consensus 734 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (945)
.||++++||..-. +.... .-|........+.++.|...+..+++++.+++-..|.++... |
T Consensus 290 ~dgt~~~wd~r~~--~~~y~--prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~ 350 (1113)
T KOG0644|consen 290 DDGTCRIWDARLE--PRIYV--PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W 350 (1113)
T ss_pred CCCceEecccccc--ccccC--CCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h
Confidence 7799999998611 11111 111112244667788888889999999999888777543211 1
Q ss_pred cCCCcccccccccCCCcCCceeEEeecCCC-ceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe
Q 002264 814 LPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (945)
Q Consensus 814 ~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg-~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg 891 (945)
+...+.-+.++.|- .+.+++- +-.+++|++.+|...+.+.+|..++..+.++|.+.++..++
T Consensus 351 ----------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 351 ----------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred ----------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 12222222222232 2334443 56799999999999999999999999999999888889999
Q ss_pred ecCceEEEEecccceEEEEe-cCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 892 TEDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 892 ~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
+.||...|||+-.|..++.. .+| +.+..-+||+||..++....-|.+.|..
T Consensus 415 g~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred cCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEec
Confidence 99999999999998776654 455 4566679999999998887778777653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-14 Score=139.99 Aligned_cols=239 Identities=10% Similarity=0.090 Sum_probs=183.6
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC--CcEEEEe-C
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-L 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd-~ 482 (945)
...+..+.|+.+...|..|+.|| -++|+.+.-.... ........|..+-|+.. +++..+.+ +.+++.+ .
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 44677788999999999999998 6888876543321 22223445777777754 44444433 4589999 6
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC---CCeEEEEEEcCCCCEEEEEeec
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.+..+..+. ...+|.++.++. +.|+++=.+. |.|||+++.+...++... ...+..+++++.+.+++.-+.
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s- 149 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS- 149 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-
Confidence 666666655 566788888754 4566655544 999999998887766543 334666667777778887654
Q ss_pred CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
...|.|.+||..+-+.+..+..|.+ .+.+++|+++|.+|+++++.|+ |+||.+.+|+.+..+........|.+++|+
T Consensus 150 -~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 150 -TTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 2378899999999999999998887 8999999999999999998887 799999999999998765555578999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|++++|++.++.++|.+|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999999754
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-15 Score=164.05 Aligned_cols=249 Identities=16% Similarity=0.162 Sum_probs=182.9
Q ss_pred CCccEEEEEEcC-CCCEEEEEECCCcEEEEEccCCcc--cccc-eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 405 VPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSND--LRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 405 h~~~V~~i~~s~-~g~~las~~~dg~i~vwd~~~~~~--~~~~-~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
-...|.|+.|+| +..++|.|+.+|+|.+||+..+.. .... .....|..+++.+.|..+-...-|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467899999999 677888999999999999988765 2111 123469999999999876442258999999999999
Q ss_pred eCCC--ceE-----EEec------CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEE---ccCCC-----eeEEecCCCC
Q 002264 481 ELSG--RKL-----FNFE------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL---YDTMG-----SRVDYDAPGH 539 (945)
Q Consensus 481 d~~~--~~~-----~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd---~~~~~-----~~~~~~~~~~ 539 (945)
+... .+. .... .....++++.|.+.. ...++.|+.+|.|.--+ ..... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8322 111 1111 123467888998764 47799999999987632 22211 1224556778
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (945)
+|+++.++|-+..++..+. |..+++|... ...++..+..+.. .+..++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999998876665553 8999999988 6667766666655 699999999764 5566778999999998754
Q ss_pred e--eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 618 N--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 618 ~--~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
. ++...... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3 34444333 346788899999999999999999999999644
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-14 Score=154.66 Aligned_cols=272 Identities=13% Similarity=0.176 Sum_probs=176.6
Q ss_pred eEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEEc
Q 002264 358 TLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSY 435 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~-~dg~i~vwd~ 435 (945)
++.++...++.|.+|++.+ ++.... ..+. +.+....++++|++++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~-----------------~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLL-----------------QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeee-----------------eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455557799999999964 322110 1121 235577899999999987764 4788999999
Q ss_pred cCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CCCcEEEEe-C-CCc---eEEEecCCCCCEEEEEeeecCCcc
Q 002264 436 AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-L-SGR---KLFNFEGHEAPVYSICPHHKENIQ 509 (945)
Q Consensus 436 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd-~-~~~---~~~~~~~~~~~v~~~~~~~~~~~~ 509 (945)
+....+....... ..+....++|+|+++ ++++++ .++.|.+|+ . .+. .+..+. +.....+++++| +++
T Consensus 65 ~~~g~l~~~~~~~-~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p--~g~ 138 (330)
T PRK11028 65 ADDGALTFAAESP-LPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP--DNR 138 (330)
T ss_pred CCCCceEEeeeec-CCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC--CCC
Confidence 7322222111221 233567899999999 555544 488999999 3 232 233332 223456677766 556
Q ss_pred EEE-EEEcCCeEEEEEccCCCeeEE-----ec-CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC--Cc--eee
Q 002264 510 FIF-STAIDGKIKAWLYDTMGSRVD-----YD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GT--IKR 578 (945)
Q Consensus 510 ~l~-s~~~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~--~~--~~~ 578 (945)
+++ +...++.|.+||+++...... .. ..+.....+.|+|+|++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 665 455679999999986432211 11 12344678999999999988763 478999999873 32 233
Q ss_pred EeccccC-----cceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe----eEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 579 TYAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 579 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
.+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|||++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3322111 1123588999999999986 47899999986432 22222221 1456899999999999887
Q ss_pred C-CCcEEEEECC
Q 002264 649 A-DNGFKILANA 659 (945)
Q Consensus 649 ~-dg~i~iw~~~ 659 (945)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8899999875
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=150.13 Aligned_cols=305 Identities=13% Similarity=0.192 Sum_probs=203.1
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeeEE
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 621 (945)
-.+|||+|++++++. +-.+.+-|..+-+..+.|..-. .|.-+.|..+..+++++ ..|+.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999997 5578888988877776666543 35567888888777765 478899999998887777
Q ss_pred EeecCCCCCCccEEEEcCCCCEEE-EEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
.++.. ..++.++.|||||+.+. +...+-.|.+|.+.+..-..-... +..+..++|+|||++.+....-+
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p-------K~~~kg~~f~~dg~f~ai~sRrD- 155 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP-------KTNVKGYAFHPDGQFCAILSRRD- 155 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc-------ccCceeEEECCCCceeeeeeccc-
Confidence 77543 44899999999996555 555688999999987632222111 12356789999999875222111
Q ss_pred ccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEE
Q 002264 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (945)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 780 (945)
| +-.+.- -.-+-|.+- +.+.. ..-..+++.|+|||..++
T Consensus 156 C-------------------------kdyv~i---~~c~~W~ll-----~~f~~--------dT~DltgieWsPdg~~la 194 (447)
T KOG4497|consen 156 C-------------------------KDYVQI---SSCKAWILL-----KEFKL--------DTIDLTGIEWSPDGNWLA 194 (447)
T ss_pred H-------------------------HHHHHH---HhhHHHHHH-----HhcCC--------CcccccCceECCCCcEEE
Confidence 0 000000 000122221 11111 223457889999999887
Q ss_pred Eeee--cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEE
Q 002264 781 ALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (945)
Q Consensus 781 ~~~~--dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iw 857 (945)
+-.+ +..|..|. -.-.+..++|||-++++|+|+ |+.++|.
T Consensus 195 Vwd~~Leykv~aYe-------------------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 195 VWDNVLEYKVYAYE-------------------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred Eecchhhheeeeee-------------------------------------eccceeEEEeccccceEEeeccchhhhhh
Confidence 6544 22222221 224578899999999999999 8888876
Q ss_pred eccCceEEE------------------------------------------------------------EecC------C
Q 002264 858 NMMTFKVMT------------------------------------------------------------TFMS------P 871 (945)
Q Consensus 858 d~~~~~~~~------------------------------------------------------------~~~~------h 871 (945)
|--+.+... .++. .
T Consensus 238 nh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 238 NHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred ceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence 532222111 1111 1
Q ss_pred CCCeeEEEeecCCCceEEEeecC--ceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 872 PPASTFLAFHPQDNNIIAIGTED--STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~d--g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.-.+.-++||+ |..++|+-... +.+-+||++..++...+. ...+|....|.|....|+.+.....+++|..
T Consensus 318 k~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 318 KCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred ccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 12366799999 89899887543 579999999887666655 5678999999999988888777777899864
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-15 Score=141.21 Aligned_cols=223 Identities=16% Similarity=0.210 Sum_probs=169.7
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-------CcEEEEe-CCC---------ceEEE
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-------KLIKVWE-LSG---------RKLFN 489 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-------~~i~vwd-~~~---------~~~~~ 489 (945)
|..|.+.+++.+...-....+..|.+.|+.++-+|-.+. +|+|+..+ ..+.||. ... +++..
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~-ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR-ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc-eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 678888888765544444467789999999999998876 67776542 2467898 222 12233
Q ss_pred ec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecC-----CCCeEEEEEEcC--CCCEEEEEeecC
Q 002264 490 FE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDA-----PGHWCTTMLYSA--DGSRLFSCGTSK 560 (945)
Q Consensus 490 ~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-----~~~~i~~~~~s~--~~~~l~~~~~~~ 560 (945)
+. .+-+.|.|+.|.| ++..+++-. |..|.+|+++....+. .+.. +....++-+|+| +|..+++.+
T Consensus 118 Ldteavg~i~cvew~P--ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--- 191 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEP--NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--- 191 (370)
T ss_pred CCHHHhCceeeEEEcC--CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC---
Confidence 33 4556899999988 456676665 8899999998876632 2221 234678888998 888888876
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++++..||+++.+....+...+...+..+.|+|+.. +|++|+.||.|++||.+. ..++..+..|.| .|.+|.|+
T Consensus 192 --d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn 267 (370)
T KOG1007|consen 192 --DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFN 267 (370)
T ss_pred --CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEec
Confidence 899999999998888777776666899999999865 567788999999999875 567788877777 99999999
Q ss_pred C-CCCEEEEEECCCcEEEEECCC
Q 002264 639 K-EGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 639 p-~g~~l~~~~~dg~i~iw~~~~ 660 (945)
| ..+++.+|+.|..|.+|....
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred CccceEEEecCCCceeEEEeccc
Confidence 9 457888999999999998754
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=148.18 Aligned_cols=254 Identities=8% Similarity=0.092 Sum_probs=180.1
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC---cccccceeec-cccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS---NDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~---~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
+-+.+|.+.|.++.||.++++||+|+.|..+++|+++.. +..+.+.... .|.+.|.|++|...+. .+++|+.++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcc
Confidence 447789999999999999999999999999999998632 1112222222 4668999999998777 899999999
Q ss_pred cEEEEe-CCCceEEEecC--CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe---eEEecCCCCeEEEEEEcCC
Q 002264 476 LIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~ 549 (945)
+|...| .+.+.+..+.. ..+.|+.+..+|.. +.+++.+.++.|.+||.+.... .+.....+....++.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999 66666655542 24589999999873 6899999999999999987652 2333334556788999997
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCce-eeEec---cccC--cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE-EE
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYA---GFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL-TS 622 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~-~~~~~---~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~ 622 (945)
...|+.... ..+-+.+||.+.... +.... +... .....+.|+|+|+.|++.-....-.+||+.+..+. ..
T Consensus 206 ~P~Li~~~~---~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 206 TPALILVNS---ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred CceeEEecc---ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 766554433 266688999876432 21111 1111 11245789999999988776666667888764432 22
Q ss_pred eecC----CCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 623 TDAE----GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 623 ~~~~----~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+... .....+.+++|..|- .+++|+++-.|.+|.+...
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 2211 112346778887654 4899999999999988543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-17 Score=175.84 Aligned_cols=341 Identities=17% Similarity=0.209 Sum_probs=220.8
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCCCCcCCCCCCCCCCCCcccccch
Q 002264 169 SRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPPTAAAANAN 248 (945)
Q Consensus 169 ~rL~~ll~q~~~~q~~~c~~~~~~~~~~~l~~~h~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 248 (945)
-.|..|+.|+++.||.+|++|+++++++|||..|+|+++..-+ ..|-|....... ..+. +
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~-~ap~N~t~Rl~~--rel~------~----------- 1072 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLL-EAPLNMTGRLGT--RELQ------S----------- 1072 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHh-hcchhhhhcccc--hhhc------C-----------
Confidence 3599999999999999999999999999999999999955111 122221111100 0000 0
Q ss_pred hhhhhcccCCCCCccccccccCCCCCCCCCccccccCCCCCCCCCceecCCCChHHHhhhcCCCCCCcceeecCCCCccc
Q 002264 249 ALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTW 328 (945)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 328 (945)
.-..+.-...+..-+..++++
T Consensus 1073 ------------------------------------------~y~gV~g~~~dr~~IFSRFr~----------------- 1093 (1516)
T KOG1832|consen 1073 ------------------------------------------FYSGVHGNRRDRQFIFSRFRS----------------- 1093 (1516)
T ss_pred ------------------------------------------cccccccCcccchhhHhhccc-----------------
Confidence 000011111122222333333
Q ss_pred cCCCCCcceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc
Q 002264 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (945)
Q Consensus 329 ~~~~~~~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (945)
.+.++ |...-+|++||-+.+. |++|+..|.|+++++.+|..... ..+|..
T Consensus 1094 ---------w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~S 1144 (1516)
T KOG1832|consen 1094 ---------WRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQS 1144 (1516)
T ss_pred ---------chhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------cccccc
Confidence 33444 7789999999999885 99999999999999999987643 667999
Q ss_pred cEEEEEEcCCCCEEEEEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 408 SVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
+|+.+.-|.||..+++.+.-. ...+|++.+- .....++ ..-.++.|+.... .-+.|.....+.+|| .++
T Consensus 1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf----~ed~~vkFsn~~q--~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSF----DEDKAVKFSNSLQ--FRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred ccccccccCCcceeeeeccccCchHHHhccccc--cCccccc----cccceeehhhhHH--HHHhcccccceEEEecccC
Confidence 999999999999887765433 4789998652 1211122 2356788987755 334455456788999 888
Q ss_pred ceEEEe-cC---CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 485 RKLFNF-EG---HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 485 ~~~~~~-~~---~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
..+.++ .+ ....-++..|+|.. .+++ .|| .+||++..+.+..+..-.. -..-.|+|.|..++..+
T Consensus 1217 ~~l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS--- 1285 (1516)
T ss_pred cHHHHhcCcchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec---
Confidence 776653 22 11223566777753 4444 344 4699998876665543332 12235999999999875
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE--CC---------------CcEEEEECCCCeeEEEe
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--ED---------------SQIKFWDMDNVNILTST 623 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~ 623 (945)
.|||+++.+.++....... +.+.|+..|+.++..- .| ...+-|+..+...+.++
T Consensus 1286 ------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi 1356 (1516)
T KOG1832|consen 1286 ------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI 1356 (1516)
T ss_pred ------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceee
Confidence 5799999998887766443 5577888887766532 00 12445566666666666
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
.... ++..++-+|...++++.-
T Consensus 1357 ~v~R---~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1357 PVDR---CLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred eccc---chhhhhcCCccceEEEEe
Confidence 6543 567777777666766553
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-15 Score=165.08 Aligned_cols=256 Identities=11% Similarity=0.040 Sum_probs=181.9
Q ss_pred cccCCCccEEEEEEcCCC-CEEEEEECCCcEEEEEccCC----cccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g-~~las~~~dg~i~vwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
.+..|+..|..++.++.. .++++|+.||+|++|+...- ...+...++..-...+.++...+.++ .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 367789999999998855 99999999999999998632 22233334444577899999999999 789999999
Q ss_pred cEEEEe-CC--Cce-----EEEecCC-CCCEEEE-EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe--cCCCCeEEE
Q 002264 476 LIKVWE-LS--GRK-----LFNFEGH-EAPVYSI-CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTT 543 (945)
Q Consensus 476 ~i~vwd-~~--~~~-----~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~ 543 (945)
.|++.+ .. ... ......+ .+.+.++ ++........++.+...+.|..||++.......+ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998 22 211 1111112 2334333 3433322237888999999999999887666544 344568999
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC---CCEEEEEE--CCCcEEEEECCCCe
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVG--EDSQIKFWDMDNVN 618 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~--~dg~i~iwd~~~~~ 618 (945)
++.+|.+.+++.|+. .|.+.+||++-+.++..........+..++.+|- ....++++ ..+.|.+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999986 8899999999998888776555556666666553 34555554 57889999999997
Q ss_pred eEEEeecCCCC-----------------CCccEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 619 ILTSTDAEGGL-----------------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 619 ~~~~~~~~~~~-----------------~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+...+-..... -......+...+.++.+|+.|..|+.||.....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 76666443110 011223333456788999999999999997763
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=164.78 Aligned_cols=285 Identities=11% Similarity=0.089 Sum_probs=191.3
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
..+....-..+.|+|-...++++...-.|+|||.+.++.+..+..-......|+.+.+-.+...-++++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 44455567788999999999999877889999999988766433222345579999987655444889999999999998
Q ss_pred --CCC----ceEEEecCCCC-----CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-CeEEEEEEcCC
Q 002264 482 --LSG----RKLFNFEGHEA-----PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSAD 549 (945)
Q Consensus 482 --~~~----~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~ 549 (945)
..+ +.+..+.+-.+ .-..+.+.+.....+|+++|.-..|+|||.+.......+.... ..+++++-+..
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 332 12222222111 0111222233333567777778999999998877776655443 36677665543
Q ss_pred -CCEEEEEeecCCCCceEEEEeCCCCc---eeeEeccccCc-ceEEEEEcCCCC-EEEEEECCCcEEEEECCCCeeEEEe
Q 002264 550 -GSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKK-SNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 550 -~~~l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
|+.+++|.. ||.|++||.+... .+..++.|... .|..+.+.+.|- .+++|+.||.|++||++.......+
T Consensus 1220 ~gn~i~AGfa----DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1220 HGNIIAAGFA----DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred CCceEEEeec----CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 577777665 9999999988643 45666666652 266788888664 5999999999999999874332222
Q ss_pred --ecCCCCC-CccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC--ccccccCcceeeeeccccccee
Q 002264 624 --DAEGGLP-NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP--PFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 624 --~~~~~~~-~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
..+...+ ..+++..+++...+|+|+. +.|+||++.... +..+..+ -.....+.+.+++|+|..-.+|
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~--l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ--LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh--hcccccCcccccCcCCCcceeeecchhHhhh
Confidence 2222112 4899999999999999998 899999996542 2222211 1112234567888888766653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-14 Score=151.16 Aligned_cols=463 Identities=13% Similarity=0.152 Sum_probs=288.0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC----------CCeeEEEEEeCCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----------NKLLCVVTCGDDK 475 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~----------~~~~~l~s~s~d~ 475 (945)
...-.++.|+|.| ++|.|+. ..|.+.|..+-+.+. .+..|...|+.+.|.|. ...++++++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446788999877 6666665 468888887766555 67789999999999863 2345788899999
Q ss_pred cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCc--cEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC-CCC
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 551 (945)
.|.+|| ..+..+..+..|..++..++|.+..+. .+|++-....++.+|+..+++....+........++.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 999999 888888889999999999999876543 4677778889999999999999999888887788899988 555
Q ss_pred EEEEEeecCCCCceEEEEeCCC-------CceeeEeccccC----------------cc--------eEEEEEcCCCCEE
Q 002264 552 RLFSCGTSKDGDSFLVEWNESE-------GTIKRTYAGFRK----------------KS--------NGVVQFDTTQNHF 600 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~-------~~~~~~~~~~~~----------------~~--------~~~~~~~~~~~~l 600 (945)
.+...+. .|.+.+-+.-. ++..+.-..|.+ .. ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 5555543 55555544321 122211111111 00 1124678877777
Q ss_pred EEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC--CEEEEEECCCcEEEEECCCCccccccccCCccccccC
Q 002264 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (945)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (945)
+.......+.++|++-..++.....+.+ .+.-+.+-|++ ..|++.-.||.+.+|--+.....+++...+-......
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~ 323 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE 323 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence 7777788899999999999988887765 45667777754 5788999999999997754322222211110000111
Q ss_pred cceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCC-CCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM-DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 679 ~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
.+.++..... +........|. ...++.--.+|...+|++.++........-
T Consensus 324 Q~~~vr~m~~--------------------------~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-- 375 (1062)
T KOG1912|consen 324 QVHVVRPMEE--------------------------FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-- 375 (1062)
T ss_pred ceEEEeechh--------------------------cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc--
Confidence 1111111100 00111111122 223344445678888988753322211110
Q ss_pred CCCCCCccceEEEEEecC-----CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCC
Q 002264 758 PESTDTSSKVVRLLYTNS-----AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 832 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~d-----g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 832 (945)
...-+..+.|... ...+...+.||. .+.|....... + ..
T Consensus 376 -----~iel~~pf~f~~~~~~v~k~~l~~LS~dg~-----------h~sGs~~~~~~-----p---------------~p 419 (1062)
T KOG1912|consen 376 -----SIELVLPFDFNLSTKLVGKTSLISLSDDGS-----------HSSGSTCVRMR-----P---------------MP 419 (1062)
T ss_pred -----cccccccccccCceeehhhccccchhhcCC-----------CCCCceeeecc-----c---------------Cc
Confidence 0001111111111 112333333331 11111111000 0 00
Q ss_pred ceeEEeecCCC-------ceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe---------ecCc
Q 002264 833 AVPCIALSKND-------SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG---------TEDS 895 (945)
Q Consensus 833 ~i~~l~~s~dg-------~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg---------~~dg 895 (945)
..+-..-.|.| .++|.|. .|+|.++|+.++...+.+..|++.|.++.|.. ..+++-.+ +.-+
T Consensus 420 ~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN 498 (1062)
T KOG1912|consen 420 ELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRN 498 (1062)
T ss_pred ccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceee
Confidence 00001111111 3678887 79999999999999999999999999999986 55444322 2234
Q ss_pred eEEEEecccceEE--EEec-CCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 896 TIHIYNVRVDEVK--SKLK-GHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 896 ~v~vwd~~~~~~~--~~l~-~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.+.|-|+++|... +.++ ....+|+.+..|.-|+||+..-.|.-+.+||+
T Consensus 499 ~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 499 DLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDL 550 (1062)
T ss_pred eEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhh
Confidence 5788899998532 2222 35678999999999999999999999999986
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-15 Score=164.55 Aligned_cols=235 Identities=12% Similarity=0.093 Sum_probs=164.2
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCcccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~ 442 (945)
+..|.+||...... ..+..|...+.+++|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~--------------------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ--------------------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCc--------------------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 46899999865432 1255678889999999999999987654 369999998875322
Q ss_pred cceeeccccccEEEEEEecCCCeeEEEE-EeCCCcEEEE--eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEE-cCC
Q 002264 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG 518 (945)
Q Consensus 443 ~~~~~~~h~~~v~~l~~s~~~~~~~l~s-~s~d~~i~vw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg 518 (945)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |..+.....+..+...+....|+| ||+.|+.++ .+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 1123333 44689999999 5554 4568876665 555555667777777788888877 556665544 678
Q ss_pred eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 519 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
..++|+++..........+.. ....|+|||+.++..+. ..+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 889998765433222222222 45789999999988763 34677999988765433322 234578999999
Q ss_pred EEEEEECCCcEEEEEC--CCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 599 HFLAVGEDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+|++++.+|.+.+|++ .+|..+..+..+. +.+..++|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999998888875 3577777776543 36788999984
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-15 Score=141.90 Aligned_cols=237 Identities=15% Similarity=0.160 Sum_probs=176.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
-..+|+|.+|++|+.. +|++.....|.||......... ..+.+..|...|+.|.|+|..+.|+
T Consensus 9 ~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 3469999999999994 8888888899999987665321 2356888999999999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE-----EEecCCCCCE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-----FNFEGHEAPV 497 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~-----~~~~~~~~~v 497 (945)
+|+.|..-+||....+...+....+..|+...+++.|+|.++ .|++||....|.||-.+++.- +.-+.+.+.|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999855555555556778999999999999999 899999999999998333321 2234567889
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEcc-----C-------------CCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYD-----T-------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.++.|+|. +-++++|+.|+.++++..- . ++...++...++.+..+.|+|+|..|+-.+.
T Consensus 150 ~sldWhpn--nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPN--NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCC--cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 99999984 4799999999999998531 1 1112233356678999999999999998886
Q ss_pred CCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCCCEEEEEECC
Q 002264 560 KDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 606 (945)
|..+.+-|..... .+.......- +...+.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeecC-CceeecCCC
Confidence 8888888876654 2222222222 4444444432 334444443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=140.96 Aligned_cols=205 Identities=22% Similarity=0.377 Sum_probs=157.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g~~ 420 (945)
+-+.|.|+.|.|++.. +++-. |..|.+|++..+..+.. .+ ....-.+|....++-+||| ||..
T Consensus 122 avg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred HhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchhe-ee------------cccccccccceecccccCCCCccce
Confidence 5569999999999997 55543 89999999988766321 11 0011233677888999999 8888
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~ 498 (945)
+++. .|+++..||+.+.++...+ -.+|...|..+.|+|+-+. +|+||+.||.|++|| .+..++..+.+|...|.
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 8876 5789999999987665432 2478889999999999887 899999999999999 56678999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCC-----------------------------CeeEEecCCCCeEEEEEEcCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-----------------------------GSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~i~~~~~s~~ 549 (945)
++.|+|..+ +++++|+.|..|.+|....- ..+.++..|...|.+++|+.-
T Consensus 263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 999999866 89999999999999964321 112245566778999999886
Q ss_pred CCEEE-EEeecCCCCceEEEEeC
Q 002264 550 GSRLF-SCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 550 ~~~l~-~~~~~~d~~~~i~iwd~ 571 (945)
..+++ +.+. ||.+.|=.+
T Consensus 342 dPWiFASLSY----DGRviIs~V 360 (370)
T KOG1007|consen 342 DPWIFASLSY----DGRVIISSV 360 (370)
T ss_pred CCeeEEEecc----CceEEeecC
Confidence 66654 4443 777766443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-13 Score=133.47 Aligned_cols=193 Identities=15% Similarity=0.208 Sum_probs=134.4
Q ss_pred ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC--CeEEEEEccCC
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTM 528 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~ 528 (945)
..+..+.|+.+.. .|..|+.|| .++|. ..-............|.-+-|+. .+++..+.+ +.+++++.+..
T Consensus 6 ~ti~~~~~Nqd~~--~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 6 PTINFIGFNQDST--LLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred cceeeeeecccee--EEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc----ceeEEEecCCCceEEEEEcccC
Confidence 3466677888887 788888877 45776 22222111111122344444432 355555544 35889988877
Q ss_pred CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc--eEEEEEcCCCCEEEEEE--
Q 002264 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS--NGVVQFDTTQNHFLAVG-- 604 (945)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-- 604 (945)
..+..+..+. .|.++.++. ++|+++- ...|+|||+++.+++.++....... +..++++..+.+++.-+
T Consensus 79 ~~ICe~~fpt-~IL~VrmNr--~RLvV~L-----ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 79 TTICEIFFPT-SILAVRMNR--KRLVVCL-----EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred ceEEEEecCC-ceEEEEEcc--ceEEEEE-----cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence 7776665544 577888764 4566655 5569999999999999887663223 44444444555777743
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCc-EEEEECCCC
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIG 661 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~-i~iw~~~~~ 661 (945)
..|.|.+||..+-+.+..+..|.+ ++.+++|+++|.+||++++.|+ ||++.+.+|
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~--~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG--PLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC--ceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 679999999999999999987755 8999999999999999999987 789999887
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-14 Score=131.49 Aligned_cols=236 Identities=14% Similarity=0.188 Sum_probs=175.2
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCC---cc----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS---ND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~---~~----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..|.+-+|+|.+++|++|..+|.|.+..+++- +. ...+...++|.++|+.++|..+ +|++|+ ||.|+-
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeecc-CceEEE
Confidence 35667799999999999999999999988631 11 1122245799999999999833 677777 699998
Q ss_pred Ee-CCCc------eEEEe--cCCC-----CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 480 WE-LSGR------KLFNF--EGHE-----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 480 wd-~~~~------~~~~~--~~~~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
|. .... .+... .-|. -.|+++...|..+ -++.++.|+.++.||++++.....+.+|...+.++.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 86 2211 11111 1122 2478888877654 455666899999999999999999999999999999
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc-------eEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS-------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
--.....+++++. ||++++||.++++.+..+....... -...++.-+..++++|+. ..+.+|+++..+
T Consensus 164 ~R~~~~qilsG~E----DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse 238 (325)
T KOG0649|consen 164 GRNANGQILSGAE----DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSE 238 (325)
T ss_pred ecccCcceeecCC----CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCC
Confidence 8666667888875 9999999999999888776443211 112344445668877764 579999999999
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+...+..+. ++..+.|.. ..+++++..+.|.-|.+.
T Consensus 239 ~t~vfpipa---~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 239 STCVFPIPA---RVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ceEEEeccc---ceeEeeeec--ceEEEeccccceeeeeec
Confidence 999998876 478888854 467788888889888875
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-13 Score=139.26 Aligned_cols=512 Identities=11% Similarity=0.132 Sum_probs=298.3
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.....|++|+....| +|+|+.||.++|-.+.+...-.... .+.........+.+.||++.|.-+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCCe-EEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 447899999999885 9999999999999886643221100 01111111223568999999999999999999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEE--EecCCCCCEEEEE
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF--NFEGHEAPVYSIC 501 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~v~~~~ 501 (945)
...+|.|.||-+-.|.-...+. -....+.|.+++|+.||. .++..-.||.|.+=..+|..+. .+++ .-...+.
T Consensus 89 SDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 9999999999998886554331 234667899999999999 6677777888877665555442 2222 1233556
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCC-------eeE----EecCCCCeEEEEEEc--------CCCCEEEEEeecCCC
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-------SRV----DYDAPGHWCTTMLYS--------ADGSRLFSCGTSKDG 562 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~~~~~l~~~~~~~d~ 562 (945)
|++ |.+.++.+-.+|.+.+||....- +.. .+...+..|..+.|. ||...++++..
T Consensus 164 ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~---- 237 (1189)
T KOG2041|consen 164 WSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA---- 237 (1189)
T ss_pred ecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----
Confidence 655 55777888888999999865321 111 111122345555553 57778888875
Q ss_pred CceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECC---------CcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 563 DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 563 ~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
+|.+.+..-.+ ..++..-.+ ..+....|+++|..++++|.+ +.|.+|. .-|+.+..++.++. .|
T Consensus 238 nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI 311 (1189)
T ss_pred CceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence 66676654333 233322222 246678999999999998843 2455554 35777788877765 79
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECC--------------------------------CCccccccccCCccccccCcc
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANA--------------------------------IGLRSLRAVENPPFEALRTPI 680 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~--------------------------------~~~~~~~~~~~~~~~~~~~~i 680 (945)
++++|-..|-.+|.+- |+.|.+=+++ +.+..++...+ .
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~---------~ 381 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTH---------F 381 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcc---------e
Confidence 9999987776666553 4455544443 32222222111 1
Q ss_pred eeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCC
Q 002264 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPES 760 (945)
Q Consensus 681 ~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 760 (945)
.++++..+.- .++.-..|+.+.-++.-+.........+.-.-.
T Consensus 382 ~~~a~~~ehC-------------------------------------vL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIG 424 (1189)
T KOG2041|consen 382 ENMAFYREHC-------------------------------------VLINRQDDGVIPEYSTLENRSRVYFLQLCNSIG 424 (1189)
T ss_pred eehheecccE-------------------------------------EEEeccccCCCcchhhhhcccceEEEeeecccC
Confidence 1122222211 112222223332221110000000000000000
Q ss_pred CCCccceEE---EEEecCCCeEEEeeecCeEEEEeecCCCCCCCCce---eeeeccccccCCCcc------cccccccCC
Q 002264 761 TDTSSKVVR---LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA---TASAVPQHWLPSSGL------LMANDVAGV 828 (945)
Q Consensus 761 ~~~~~~v~~---l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~l~~~ 828 (945)
..-...++. .-..-+|..++.++.+ .+.+|....+.+...-.. .......+=|..+|. -....+.|
T Consensus 425 T~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G- 502 (1189)
T KOG2041|consen 425 TSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLG- 502 (1189)
T ss_pred CcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeecc-
Confidence 001111111 1223356656666555 678888765432111000 000001111222221 01122444
Q ss_pred CcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecc---c
Q 002264 829 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR---V 904 (945)
Q Consensus 829 ~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~---~ 904 (945)
..++|.+++.| .+++.++- .|.|.=|.+.+.-...... -...|..+...- +...+|.-.--|.+.+.|+. +
T Consensus 503 -~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~ 577 (1189)
T KOG2041|consen 503 -SKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFD 577 (1189)
T ss_pred -CCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeecc-CcchhhhhhhhceeeeeecccccC
Confidence 67888888875 56777776 7999999998776655544 455688999888 77788888888888888876 3
Q ss_pred ceEEE-EecCCCcceeEEEecCCcceee
Q 002264 905 DEVKS-KLKGHQKRITGLAFSTSLNILV 931 (945)
Q Consensus 905 ~~~~~-~l~~h~~~V~~l~~s~dg~~l~ 931 (945)
|..+. -+......|+.+.|..|...|+
T Consensus 578 g~ql~~~~~~errDVWd~~Wa~dNp~ll 605 (1189)
T KOG2041|consen 578 GDQLKLIYTSERRDVWDYEWAQDNPNLL 605 (1189)
T ss_pred cceeeeeehhhhhhhhhhhhccCCchHH
Confidence 44443 4455667799999987765444
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=138.59 Aligned_cols=245 Identities=13% Similarity=0.208 Sum_probs=175.6
Q ss_pred ecCCCcEEEEEEeCCCC----eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 341 LHQGSTVISMDFHPSHQ----TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~----~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
+.|.-+++.+.|.|+.. .+|||. +..+++|.+...+...... ..+....-..+..++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhccCcccccCCccccccccc
Confidence 67999999999999863 367775 4689999987432211000 0001112334678999999998
Q ss_pred -CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC---ceEEEec
Q 002264 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFE 491 (945)
Q Consensus 417 -~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---~~~~~~~ 491 (945)
+-++|.+++-|-+..|||+++|........+-+|...|..++|...+.. .|++.|.||.|++|| ..- ..+..-.
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 7789999999999999999997442222256789999999999997776 899999999999999 322 2222222
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcC-CeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCC-CEEEEEeecCCCCceEEE
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~i 568 (945)
....+...++|+.. |-+++++-..| ..|.+.|++... .+..+..|...|+.++|.|.. ..++++|. |....+
T Consensus 240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALI 314 (364)
T ss_pred CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEE
Confidence 33567888898765 55778777665 468999998765 455788999999999999955 56777774 889999
Q ss_pred EeCCCCc------eeeEeccccCcceEEEEEcCC-CCEEEEEEC
Q 002264 569 WNESEGT------IKRTYAGFRKKSNGVVQFDTT-QNHFLAVGE 605 (945)
Q Consensus 569 wd~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 605 (945)
||+.+.- ++..+. ....|+.+.|++. +.+++.+..
T Consensus 315 WDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred EecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec
Confidence 9987532 222222 2236888999864 566666653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-13 Score=144.49 Aligned_cols=330 Identities=12% Similarity=0.101 Sum_probs=196.9
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
++++-..++.|.+.| .+.+.+.++.........+.+++ ||+++++++.||.|.++|+.+.+...++.... ...+++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 556777899999999 88888998886554434455544 77899999999999999999999887776544 567899
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc------CcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN 618 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 618 (945)
+++||++++++.. ..+.+.++|.++.++++.+.... ...+..+..++....+++.- +.+.|.+.|.....
T Consensus 85 ~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 85 VSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp E--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9999999998765 37899999999999998876432 12456677788887666655 45889888987765
Q ss_pred eEE--EeecCCCCCCccEEEEcCCCCEEEEE-ECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 619 ILT--STDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 619 ~~~--~~~~~~~~~~v~~v~~sp~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
.+. .+... .......|+|++++++++ ..+..|.++|..++.. ...+.. |+..
T Consensus 162 ~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i~~------------------g~~p--- 216 (369)
T PF02239_consen 162 NLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALIDT------------------GKKP--- 216 (369)
T ss_dssp CEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEEE-------------------SSSB---
T ss_pred ccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceE-EEEeec------------------cccc---
Confidence 443 33322 256789999999987765 4467899999887632 111110 0000
Q ss_pred CCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC
Q 002264 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (945)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 775 (945)
. +.....+. |...=.--+....
T Consensus 217 ----------------------------------------~------------~~~~~~~p------hp~~g~vw~~~~~ 238 (369)
T PF02239_consen 217 ----------------------------------------H------------PGPGANFP------HPGFGPVWATSGL 238 (369)
T ss_dssp ----------------------------------------E------------ETTEEEEE------ETTTEEEEEEEBS
T ss_pred ----------------------------------------c------------cccccccc------CCCcceEEeeccc
Confidence 0 00000000 1110000111122
Q ss_pred CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEec---C-C
Q 002264 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA---T-G 851 (945)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~---s-d 851 (945)
+...++.-... .+.+|+..+.+.+...- . .... .-+..+||++++.+. + +
T Consensus 239 ~~~~~~~ig~~----------------------~v~v~d~~~wkvv~~I~-~--~G~g-lFi~thP~s~~vwvd~~~~~~ 292 (369)
T PF02239_consen 239 GYFAIPLIGTD----------------------PVSVHDDYAWKVVKTIP-T--QGGG-LFIKTHPDSRYVWVDTFLNPD 292 (369)
T ss_dssp SSSEEEEEE------------------------TTT-STTTBTSEEEEEE----SSSS---EE--TT-SEEEEE-TT-SS
T ss_pred cceecccccCC----------------------ccccchhhcCeEEEEEE-C--CCCc-ceeecCCCCccEEeeccCCCC
Confidence 22221111111 23344555555444322 1 2233 677889999999988 3 3
Q ss_pred -CeEEEEeccCceEEEEecCCC-CCeeEEEeecCCCceEEEeecC--ceEEEEecccceEEEEec
Q 002264 852 -GKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTED--STIHIYNVRVDEVKSKLK 912 (945)
Q Consensus 852 -~~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~~~~~~lasg~~d--g~v~vwd~~~~~~~~~l~ 912 (945)
++|.|+|..+.+...++.... ..+..+.|++ +|+.+.....+ +.|.|||..+.+.+.++.
T Consensus 293 ~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 293 ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 679999999998888876322 3489999999 77755544433 379999999999988876
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=161.69 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=135.1
Q ss_pred EeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-------eeEEecCCCCeEEEEEEcCCCCE
Q 002264 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-------SRVDYDAPGHWCTTMLYSADGSR 552 (945)
Q Consensus 480 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~ 552 (945)
|+..|..+..+..|...+..++.++. ++.++++||.||+|++|+.+... ...++...+..+..+...+.+..
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 88899999999999999999988753 55899999999999999986532 23345556778999999999999
Q ss_pred EEEEeecCCCCceEEEEeCCCC--c-----eeeEeccccCcc-eEEEEEcC-CCC-EEEEEECCCcEEEEECCCCeeEEE
Q 002264 553 LFSCGTSKDGDSFLVEWNESEG--T-----IKRTYAGFRKKS-NGVVQFDT-TQN-HFLAVGEDSQIKFWDMDNVNILTS 622 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~--~-----~~~~~~~~~~~~-~~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 622 (945)
+++++. ||.|.+.++... + ..+....+..+. +..-++.. .+. .++.+..-+.|..||.+.......
T Consensus 1113 ~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 999974 999999988752 1 112222222222 22223322 233 677788889999999998877776
Q ss_pred eecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++..-..+.|++++.+|.+.++++|+..|.+.+||++-+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 666554568999999999999999999999999999765
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-13 Score=129.26 Aligned_cols=237 Identities=11% Similarity=0.145 Sum_probs=170.7
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeecccc--ccEEEEEEecCCCeeEEEEEeCC------CcEEE
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV--GAVNDLAFAYPNKLLCVVTCGDD------KLIKV 479 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~--~~v~~l~~s~~~~~~~l~s~s~d------~~i~v 479 (945)
...+++|+.|...+++|..+| .+||+.+--+... .-..+. -.+..|-|- .+. +.+.||.+ +.|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR--~N~-laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFR--SNY-LALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhh--hce-EEEecCCCCCCCCCceEEE
Confidence 445599999999999998887 8999986522211 111122 223333332 332 23334433 47999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-CCCeeEEecCCC--CeEEEEEEcCCCCEEEE
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPG--HWCTTMLYSADGSRLFS 555 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~ 555 (945)
|| ...+++.++. ...+|.++.+.+ + .|++ -.++.|.+|... ..+....+.... ....+++-+.+...|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r--~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRR--D--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcC--C--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 99 8888888886 678899999865 2 3443 357889999887 334444443322 23444444445555555
Q ss_pred EeecCCCCceEEEEeCCCCce--eeEeccccCcceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeeEEEeecCCCCCCc
Q 002264 556 CGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
-|. ..|.|.+-|+...+. ...+..|.. .|.+++++.+|..+++++..|+ |+|||..+|..+..+........|
T Consensus 154 Pg~---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PGF---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CCC---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 554 578999999887655 466777776 8999999999999999999887 799999999999999876666789
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+++|||++.+||++++.|++.||.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999999764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-14 Score=158.12 Aligned_cols=235 Identities=11% Similarity=0.081 Sum_probs=161.5
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
+..|++||..... .+.+..+.. .+....|+|+|+.++.++.+ ..|++||+.+++........+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence 4689999986555 344555544 67889999999999987743 469999998886543332222 245789999
Q ss_pred CCCEEEEEE-CCCcEEEEE--CCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCccc
Q 002264 640 EGNLLAVTT-ADNGFKILA--NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (945)
Q Consensus 640 ~g~~l~~~~-~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (945)
||+.|+.++ .+|.+.||. +.++. ...+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~--~~~l------------------------------------------------ 287 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGT--PSQL------------------------------------------------ 287 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCC--eEee------------------------------------------------
Confidence 999988765 577766654 33321 0000
Q ss_pred CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecC
Q 002264 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHR 795 (945)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~ 795 (945)
.. +...+....|+|||+.|+.++ .+|...+|+++.
T Consensus 288 -----------------------------------------t~---~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 288 -----------------------------------------TS---GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred -----------------------------------------cc---CCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 00 222345678899998877665 467888887542
Q ss_pred CCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCe
Q 002264 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAS 875 (945)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i 875 (945)
. ++... .+ . +.. .+.+|||||++++.++.+.+.+||+.+++.......+ ..
T Consensus 324 ~--------------------~~~~~--~l-~--~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~ 374 (429)
T PRK01742 324 S--------------------GGGAS--LV-G--GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LD 374 (429)
T ss_pred C--------------------CCCeE--Ee-c--CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CC
Confidence 1 11110 01 1 222 4578999999999888556777999988764333322 34
Q ss_pred eEEEeecCCCceEEEeecCceEEEEecc--cceEEEEecCCCcceeEEEecCC
Q 002264 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVR--VDEVKSKLKGHQKRITGLAFSTS 926 (945)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~vwd~~--~~~~~~~l~~h~~~V~~l~~s~d 926 (945)
..+.|+| ++++|+.++.+|.+.+|.+. +|..+.++.+|.+.+..++|+|-
T Consensus 375 ~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 375 ESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 5788999 99999999999999888864 58888999999999999999984
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=149.12 Aligned_cols=196 Identities=15% Similarity=0.180 Sum_probs=147.6
Q ss_pred EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC
Q 002264 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (945)
Q Consensus 348 ~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d 427 (945)
.+++|+++|. .|++|+.||+++||++.+...+.. ...|...|.++.|||||+.|++-+.|
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~-------------------e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILE-------------------EIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhh-------------------hHhhcCccccceeCCCCcEEEEecCC
Confidence 8999999998 699999999999999887765532 55689999999999999999999999
Q ss_pred CcEEEEEccCCcccccceeeccccccEEEEEEecCC---CeeEEEEEeCCCcEEEEe-C--CC-c--eEEEecCCCCCEE
Q 002264 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN---KLLCVVTCGDDKLIKVWE-L--SG-R--KLFNFEGHEAPVY 498 (945)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~~~l~s~s~d~~i~vwd-~--~~-~--~~~~~~~~~~~v~ 498 (945)
..+||++++|..+.... -..-......+.|+.|+ ...+++....-+.|+.|| . .+ . ...+.......|+
T Consensus 208 -~~~VW~~~~g~~~a~~t-~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siS 285 (398)
T KOG0771|consen 208 -SARVWSVNTGAALARKT-PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSIS 285 (398)
T ss_pred -ceEEEEeccCchhhhcC-CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcce
Confidence 89999999996665322 12345567889999887 321334444556677766 1 11 1 1222222344689
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
+++++. +|++++.|+.||.|-+++..+.+.... -..|...|+.+.|+||.+++++.+. +....+..+
T Consensus 286 sl~VS~--dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs----~~~~~v~~l 353 (398)
T KOG0771|consen 286 SLAVSD--DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS----DNEAAVTKL 353 (398)
T ss_pred eEEEcC--CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc----CCceeEEEE
Confidence 999865 779999999999999999887666553 4567779999999999999998775 555555443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-13 Score=145.03 Aligned_cols=319 Identities=12% Similarity=0.062 Sum_probs=191.3
Q ss_pred EEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEE
Q 002264 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (945)
Q Consensus 511 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 590 (945)
+++-..++.|.+.|..+.+....+......-..+.++|||+++++++. ++.|.++|+.+++.+.++.... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--Ccce
Confidence 355667899999999998888888776655556789999999999874 7899999999999999887654 4677
Q ss_pred EEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCC-----CCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCcc
Q 002264 591 VQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (945)
Q Consensus 591 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~ 663 (945)
++++++|+++++++ ..+.+.++|..+.++++.+..... ...+.++..+|....++..-. .+.|.+.|..+...
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999876 789999999999999988865422 235667878887775555544 46777767654311
Q ss_pred ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccc
Q 002264 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (945)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (945)
....
T Consensus 163 ~~~~---------------------------------------------------------------------------- 166 (369)
T PF02239_consen 163 LKVT---------------------------------------------------------------------------- 166 (369)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred ccee----------------------------------------------------------------------------
Confidence 1000
Q ss_pred ceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccc
Q 002264 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (945)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (945)
.+. .........|+|++++++++. ..+.+-++|.... +..+ ..+. |....
T Consensus 167 ----------~i~------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~------k~v~-----~i~~--g~~p~ 217 (369)
T PF02239_consen 167 ----------TIK------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG------KLVA-----LIDT--GKKPH 217 (369)
T ss_dssp ----------EEE--------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT------EEEE-----EEE---SSSBE
T ss_pred ----------eec------ccccccccccCcccceeeecccccceeEEEeeccc------eEEE-----Eeec--ccccc
Confidence 000 112234567788888766543 3566767764321 1111 0111 11000
Q ss_pred -ccccCCCcC--CceeEEeecCCCceE-EecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe----ecC
Q 002264 823 -NDVAGVNLE--EAVPCIALSKNDSYV-MSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----TED 894 (945)
Q Consensus 823 -~~l~~~~~~--~~i~~l~~s~dg~~l-a~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg----~~d 894 (945)
....+..|. ++++.. +..+... ...+.+.+.+||..+++.++++....++ .-+..+| ++++|.+. ...
T Consensus 218 ~~~~~~~php~~g~vw~~--~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~ 293 (369)
T PF02239_consen 218 PGPGANFPHPGFGPVWAT--SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDA 293 (369)
T ss_dssp ETTEEEEEETTTEEEEEE--EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSH
T ss_pred ccccccccCCCcceEEee--ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCC
Confidence 000000011 122222 2233333 2223556778999999999999976666 8888899 88888887 455
Q ss_pred ceEEEEecccceEEEEecCCC-cceeEEEecCCcceeeeecCC--ceEEEEec
Q 002264 895 STIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD--AQVTLCVE 944 (945)
Q Consensus 895 g~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~~~D--g~i~vWdl 944 (945)
++|.|+|.++.+.+..+.... ..+..+.|++||+++..+..| +.|.|||.
T Consensus 294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 899999999998888875332 359999999999976655433 36999985
|
... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=150.06 Aligned_cols=295 Identities=11% Similarity=0.106 Sum_probs=217.5
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|.+.|..|.|+..|..|++|+.|..|.+||+..+..... -..+|...|....|.|.....-+++++.||.+++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34788999999999999999999999999999999998765442 2348999999999988655447899999999998
Q ss_pred Ee--CCCce--EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC---CCC---eEEEEEEcCC
Q 002264 480 WE--LSGRK--LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---PGH---WCTTMLYSAD 549 (945)
Q Consensus 480 wd--~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~---~i~~~~~s~~ 549 (945)
=. .++.. ...+..|.++|..++.-|.. ..-|.+++.|+.+.-+|++.......+.. +.. ....++..|.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 77 44443 35667799999999987764 36789999999999999987655443321 222 5678888897
Q ss_pred CC-EEEEEeecCCCCceEEEEeCCCCce------eeEeccc-----cCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-
Q 002264 550 GS-RLFSCGTSKDGDSFLVEWNESEGTI------KRTYAGF-----RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN- 616 (945)
Q Consensus 550 ~~-~l~~~~~~~d~~~~i~iwd~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 616 (945)
.. .+++++. +..+++||.+.-.. +..+..+ ..-.|++++++.++.-+++...|-.|++|.-.-
T Consensus 293 nt~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 293 NTNEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred CccccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 66 5666664 78899999775321 2222222 222488999998888888888899999995432
Q ss_pred -C----------eeEEE-eecCCCCCCccEEEE-cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 617 -V----------NILTS-TDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 617 -~----------~~~~~-~~~~~~~~~v~~v~~-sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
| ..+.. +++|.....|..+-| -|...++++|++-|.|.||+-.++ +.++.+.+... -|.|+
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~-----VVNCL 442 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRH-----VVNCL 442 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccc-----eEecc
Confidence 3 22233 667766667888875 568899999999999999999888 56665554322 24455
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
.-.|.-. .|++.+.|..|+||...
T Consensus 443 EpHP~~P-------------------------------------vLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 443 EPHPHLP-------------------------------------VLASSGIDHDVKIWTPL 466 (559)
T ss_pred CCCCCCc-------------------------------------hhhccCCccceeeecCC
Confidence 4444333 34788888999999863
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.1e-15 Score=149.41 Aligned_cols=193 Identities=16% Similarity=0.139 Sum_probs=132.4
Q ss_pred CCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCC-eEEEeeecCeEEEEeecCCCC--CC
Q 002264 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQ--NP 800 (945)
Q Consensus 724 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~lw~~~~~~~--~~ 800 (945)
+++--+++|-..|.+.+.+.........+ . ....-....++++.|-|.+. .++++-.+|.+.+||...... .+
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklf---n-e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLF---N-EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhh---h-hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 44445566666677776665431111100 0 00011347899999998654 456666799999998643211 11
Q ss_pred CCceeee---eccccccCCCc-ccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCe
Q 002264 801 SGKATAS---AVPQHWLPSSG-LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 875 (945)
Q Consensus 801 ~~~~~~~---~~~~~~~~~~~-~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i 875 (945)
.-..... ..+..|..... .++.. +.- -.+.|..++|||||++||+.+ ||.++|||..+.+++..++..-+..
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~-w~~--~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL 335 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVAR-WHI--GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL 335 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccce-eEe--ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce
Confidence 0000000 01111111111 11111 111 245899999999999999999 9999999999999998888888899
Q ss_pred eEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEec
Q 002264 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (945)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 924 (945)
.|++||| ||++|++|++|.-|.||.+..++.+.+-++|...|..|+|.
T Consensus 336 LCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 336 LCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999 99999999999999999999999999999999999999997
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-13 Score=131.92 Aligned_cols=283 Identities=14% Similarity=0.160 Sum_probs=186.5
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CCEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGV 423 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~las 423 (945)
..+..++|++.-- -+|++..|-.|++||-.. +... .+-......|+|++|-|. ++-|+.
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt------------------~Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPT------------------KLKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCc------------------eecchhhcceeEEEeccCCcceeee
Confidence 4688899998655 378889999999999765 2221 011123568999999994 567888
Q ss_pred EECCCcEEEEEccCCcccc-----------cceeeccccccEEEEEEecCCCeeEEEEEeC-CCcEEEEe-CCCceEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLR-----------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~-----------~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-d~~i~vwd-~~~~~~~~~ 490 (945)
|+..| |.+|..+...... .+....+| .+|++++|.+||. .+++++. |..|.||| .++..+.-.
T Consensus 159 gCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 159 GCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc
Confidence 88776 9999875321111 11123345 6899999999999 7888875 56899999 666655444
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
....+.+.-+.|+| |+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+.+.. +. -.+|.
T Consensus 235 ~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gs--p~lys 307 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GS--PRLYS 307 (445)
T ss_pred ccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CC--ceEEE
Confidence 34556788899988 5679999999999999965543333333344458999999999999887663 23 33333
Q ss_pred CCC----Cc-----------eeeEe------cc--ccCcceEEEEEcCCCCEEEEEECC--------CcEEEEECCCCee
Q 002264 571 ESE----GT-----------IKRTY------AG--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNI 619 (945)
Q Consensus 571 ~~~----~~-----------~~~~~------~~--~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~ 619 (945)
+.- +. ++..+ .+ .-.+...+++|+|.|.++++.-.. +.|.+||.+..-.
T Consensus 308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 321 10 00000 01 002246789999999999986533 3467788766544
Q ss_pred EEEee-cCCCCCCccEEEEcC---CCCEEEEEECCCcEEEEEC
Q 002264 620 LTSTD-AEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 620 ~~~~~-~~~~~~~v~~v~~sp---~g~~l~~~~~dg~i~iw~~ 658 (945)
+.... +......-..++|+| +|.+|.++-..|.+.-|++
T Consensus 388 vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 388 VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 43331 111111245677777 6778888888888877765
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=149.48 Aligned_cols=284 Identities=14% Similarity=0.182 Sum_probs=219.1
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
..+.+.|+.+|++ |+.|+..|.|..+|+.+++...... -...|.++.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 5678999999997 6677889999999999988764311 235788999999999999884
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (945)
...+.|||-. |..+.++ . ....|..+.|.|..- +|++++..|.++.-| ..|+.+..+....+.+..++-+|
T Consensus 190 -K~y~yvYD~~-GtElHCl---k-~~~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNN-GTELHCL---K-RHIRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCC-CcEEeeh---h-hcCchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 5679999955 4445433 2 335689999999877 899999999999999 89999999988888898888877
Q ss_pred cCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
.+ ..+-+|...|+|.+|.....+....+-.|.++|.++++.++|++++++|. |..++|||++....+.++....
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecCC
Confidence 54 68889999999999999999999999999999999999999999999997 8999999999887666665522
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEE-CCCC--eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
....+++|..| +++.+....+.||. .-.+ .....+-.|....+|..+.|.|-...|.+|-..|.-.+.=...|
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 45667888654 45555556799994 3221 12222222333448999999998888888887776666655555
Q ss_pred ccccccc
Q 002264 662 LRSLRAV 668 (945)
Q Consensus 662 ~~~~~~~ 668 (945)
......+
T Consensus 412 ePN~Ds~ 418 (545)
T KOG1272|consen 412 EPNYDSL 418 (545)
T ss_pred CCCcchh
Confidence 4333333
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=140.79 Aligned_cols=283 Identities=13% Similarity=0.131 Sum_probs=206.7
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC--CccEEEEEEc
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWS 415 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~i~~s 415 (945)
+.-++|...-+.|..||||+|++|||...-.|++||+..-.... ..| ...|.-.-.|
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~feiLs 103 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEILS 103 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEEec
Confidence 34467888889999999999999999999999999998755432 223 3455556666
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~ 494 (945)
.|-..++.-..|.+|.+...- |.... +. -...-.+++++.-... |+.++....|+-++ ..|+-+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~-G~hy~----~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKY-GRHYR----TR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhc-Ceeee----ee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 666666666778877776432 22111 10 1122345555544442 34444456788888 8999999998888
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC------C-----eEEEEEEcCCCCEEEEEeecCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------H-----WCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~-----~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
+.++++..++.. .+|++|+.+|.|..||.+.......+.... . .|+++.|+.+|-.+++++. .
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~ 249 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----T 249 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----C
Confidence 999999987753 689999999999999998876655443321 1 5899999999999999986 9
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCC--CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g 641 (945)
|.+.+||+++.+++..-......++..+.|.+. ++.+++ .....++|||-.+|+....+.... .++.+++-|++
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~s 325 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGS 325 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecCC
Confidence 999999999988876554444446777888665 334443 345689999999999988886533 68999999999
Q ss_pred CEEEEEECCCcEEEEECC
Q 002264 642 NLLAVTTADNGFKILANA 659 (945)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~ 659 (945)
.+++++-.++.+..|=+.
T Consensus 326 Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEEecCCCcceeEEcc
Confidence 999999988877766554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-13 Score=145.58 Aligned_cols=238 Identities=11% Similarity=0.108 Sum_probs=156.5
Q ss_pred CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC---CCcEEEEEccCCccccc
Q 002264 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQ 443 (945)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~---dg~i~vwd~~~~~~~~~ 443 (945)
..|.+||....... .+..+...+.+.+|||||+.||..+. +..|.+|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~--------------------~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQF--------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCE--------------------EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 36888887654432 13446678999999999999987643 3579999998875322
Q ss_pred ceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC-CeE
Q 002264 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GKI 520 (945)
Q Consensus 444 ~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i 520 (945)
+....+.+..++|+|||+. ++++.+.++ .|.+||..+..+..+..+...+....|+| ||+.|+..+.+ +..
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 2223334557899999995 233344455 58889944444455555555677788877 56777666654 455
Q ss_pred EEE--EccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 521 KAW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 521 ~iw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
.+| |+..+.. ..+...........|+|||++++..+.. ++...|++||+.+++........ ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~Lt~~~---~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQVLTDTF---LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEEeCCCC---CCCCceECCCCC
Confidence 555 5554433 3333444455678999999999887642 23567999999888654332221 233578999999
Q ss_pred EEEEEECCCc---EEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 599 HFLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 599 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
.++.++.++. +++++++ |.....+..+. +.+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCC--CCcCCcccCC
Confidence 9999887664 6777874 44445555433 3678888987
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=142.20 Aligned_cols=196 Identities=14% Similarity=0.105 Sum_probs=148.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE
Q 002264 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (945)
Q Consensus 410 ~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~ 488 (945)
.+++|+.+|..|++|+.||++|||++.+...+. ....|.+.|.++.|+|||+ .|++-+.| ..+||+ .+|..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEeccCchhh
Confidence 789999999999999999999999987665444 5667999999999999999 89999999 999999 8887666
Q ss_pred EecCC--CCCEEEEEeeecCCcc--EEEE-EEcCCeEEEEEccCCCe-----eEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 489 NFEGH--EAPVYSICPHHKENIQ--FIFS-TAIDGKIKAWLYDTMGS-----RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 489 ~~~~~--~~~v~~~~~~~~~~~~--~l~s-~~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
..... ......+.|..++.+. ++++ ...-+.|+.||+..... ..........|++++.++||++++.++.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 55422 2234455555433211 2222 23345566665543222 1122223347999999999999999986
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
+|.|-+++..+.+.++.++..+...|+.+.|+|+.+++++.+.|....+..+.
T Consensus 302 ----dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 302 ----DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred ----CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 88999999999988888877666689999999999999998888888777654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=129.91 Aligned_cols=234 Identities=18% Similarity=0.201 Sum_probs=179.2
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
-..+|+|.+|++|+..+|.+.....|.||...+........++..|...|+.++|+|..+ .|++|+.|..-+||. .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999988776666778999999999999999999 899999999999999 35
Q ss_pred C---ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE----EecCCCCeEEEEEEcCCCCEEEEE
Q 002264 484 G---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 484 ~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
+ ++...+..+....+++.|+|.+ +.+++|+..+.|.+|-++..+.-. .-......|.++.|+|++-.++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 3445667789999999998854 689999999999999876654332 122335579999999999999998
Q ss_pred eecCCCCceEEEEeCC-----C-------------CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 557 GTSKDGDSFLVEWNES-----E-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
+. |+..+++..- + |+++..+. ...+.+..+.|+|+|+.|+-.+.|+.+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 86 8888887631 1 22233332 223368889999999999999999999999987664
Q ss_pred -eEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+....... -+..++.|-.+... +.++.|
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~v-v~ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSV-VAAGYD 269 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCce-eecCCC
Confidence 233332222 25677777655443 344444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-10 Score=130.67 Aligned_cols=420 Identities=10% Similarity=0.091 Sum_probs=243.0
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEE----EccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
..+.|.++.+-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. .++..+.++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444322 22 2334567899999999999 66666667777764
Q ss_pred eCCCceE------------------------EEecCCCC------------------CE----EEEEeeecCCccEEEEE
Q 002264 481 ELSGRKL------------------------FNFEGHEA------------------PV----YSICPHHKENIQFIFST 514 (945)
Q Consensus 481 d~~~~~~------------------------~~~~~~~~------------------~v----~~~~~~~~~~~~~l~s~ 514 (945)
+.+-..+ ..|.|..+ .+ ..+.+++.+||.++++.
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 4222111 11111100 01 23344557799999988
Q ss_pred Ec---C---CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc---ccC
Q 002264 515 AI---D---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---FRK 585 (945)
Q Consensus 515 ~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~---~~~ 585 (945)
+. . +.+++|+-+ +........-.+--.+++|.|.|+.+++.-. ..+...|.+|. ++|-....|.- ...
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 75 2 579999754 3333333333334467899999999998875 33345666676 34443333332 233
Q ss_pred cceEEEEEcCCCCEEEEEECCCcEEEEECCCCee--EEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCc
Q 002264 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
..+..+.|++++..|+..-.|. |.+|...+..- .+.+..... ..+..+.|+| +...|...+.+|.+..++..-..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 4688899999999999977665 99999988763 333433322 2456699999 55667777777887766553110
Q ss_pred cccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccc
Q 002264 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (945)
Q Consensus 663 ~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (945)
........+ -.++..--||..+ .+-.
T Consensus 383 ~~s~~~~~~--------D~g~vaVIDG~~l----------------------------------------------llTp 408 (928)
T PF04762_consen 383 SRSPGSSPN--------DNGTVAVIDGNKL----------------------------------------------LLTP 408 (928)
T ss_pred EecCCCCcc--------CceEEEEEeCCeE----------------------------------------------EEec
Confidence 000000000 0111222233222 1111
Q ss_pred cceeecCCcc--eeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccc
Q 002264 743 LAEIVDSGQC--RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (945)
Q Consensus 743 ~~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (945)
+.....+... ..+. -...|.+++|++++..+++...||.+.+|................ ........
T Consensus 409 f~~a~VPPPMs~~~l~------~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 477 (928)
T PF04762_consen 409 FRRAVVPPPMSSYELE------LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL-----SSISLDSM 477 (928)
T ss_pred ccccCCCchHhceEEc------CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----hhcccccc
Confidence 1111112222 2222 345899999999999899999999999998654332110000000 00000000
Q ss_pred ccccccCCCcCCceeEEeecCCCceEEecC-C---CeEEEEeccCce---EEEEecCCCCCeeEEEeecCCCceEEEeec
Q 002264 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-G---GKISLFNMMTFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (945)
Q Consensus 821 ~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d---~~i~iwd~~~~~---~~~~~~~h~~~i~~l~~s~~~~~~lasg~~ 893 (945)
...... .....+..++|..+..+++... + +.+.+++....+ .......-.+.+..+...+ +...++.-..
T Consensus 478 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~ 554 (928)
T PF04762_consen 478 DISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTN 554 (928)
T ss_pred cccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEEC
Confidence 000000 0245678888888887777665 3 358888874332 2333333344455555555 4444666677
Q ss_pred CceEEEEecc
Q 002264 894 DSTIHIYNVR 903 (945)
Q Consensus 894 dg~v~vwd~~ 903 (945)
+|.|...+..
T Consensus 555 ~G~v~~~~~~ 564 (928)
T PF04762_consen 555 DGKVFQLSSD 564 (928)
T ss_pred CCEEEEeecC
Confidence 8888866544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-12 Score=126.28 Aligned_cols=195 Identities=12% Similarity=0.162 Sum_probs=139.2
Q ss_pred ccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC-CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS 530 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 530 (945)
..+..++|++.-. .++++..|-.|++||.+.++...++. ....|++++|.|... ..|+.|+. +-|.+|..+....
T Consensus 99 ~dlr~~aWhqH~~--~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsa-selavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHII--AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSA-SELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhh--hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCc-ceeeeeec-ceeEEEEcCcccc
Confidence 3577899998555 78999999999999955466555553 355799999988653 45666665 4578897543211
Q ss_pred e------------EEecCCC-CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC
Q 002264 531 R------------VDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 531 ~------------~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
. ..+..++ ..|+++.|.+||..+++++. ++..|.+||..++..+....... +.+.-+.|+||+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~---gsssi~iWdpdtg~~~pL~~~gl-gg~slLkwSPdg 250 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF---GSSSIMIWDPDTGQKIPLIPKGL-GGFSLLKWSPDG 250 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc---CcceEEEEcCCCCCcccccccCC-CceeeEEEcCCC
Confidence 1 1112222 38999999999999999987 68899999999987665542222 257789999999
Q ss_pred CEEEEEECCCcEEEEECCCC-eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 598 NHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.+|+++.-|+..++|+.... ....-.-. .+.|...+|+|+|++|...... .-+++.+
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lg---sgrvqtacWspcGsfLLf~~sg-sp~lysl 308 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILG---SGRVQTACWSPCGSFLLFACSG-SPRLYSL 308 (445)
T ss_pred CEEEEecccceeeeehhcccceecceecc---CCceeeeeecCCCCEEEEEEcC-CceEEEE
Confidence 99999999999999965432 22222222 2379999999999988766543 4445554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-12 Score=132.39 Aligned_cols=331 Identities=13% Similarity=0.118 Sum_probs=209.3
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE-----EC-----CC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-----GE-----DS 607 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~-----dg 607 (945)
...++..+++++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.++++.+- .. .-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 34577889999999999886 778999999888644444332 46789999999988762 12 24
Q ss_pred cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
.+.+|++.++.....+......+ ++..|++|..+.|- -..+.+.+|++.+...... ..+...+..+.++|
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-------kl~~~~i~~f~lSp 175 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-------KLSVSGITMLSLSP 175 (566)
T ss_pred ceeeeeeccceehhheehhhhcC--cccccccchhhhhh-hhcceEEEEecCCccceee-------eeeccceeeEEecC
Confidence 57899999966666565443322 68899988765443 2346899999876322222 22234467777877
Q ss_pred cccc--eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCcc
Q 002264 688 SASS--AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (945)
Q Consensus 688 ~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (945)
.+.. +++ +-+ -..+.-..+++|..............++ ...
T Consensus 176 gp~~~~vAv-yvP-------------------------------e~kGaPa~vri~~~~~~~~~~~~a~ksF-----Fka 218 (566)
T KOG2315|consen 176 GPEPPFVAV-YVP-------------------------------EKKGAPASVRIYKYPEEGQHQPVANKSF-----FKA 218 (566)
T ss_pred CCCCceEEE-Ecc-------------------------------CCCCCCcEEEEeccccccccchhhhccc-----ccc
Confidence 6432 221 111 1223335677777652111111111011 222
Q ss_pred ceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 766 KVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 766 ~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
.-..+.|.+-|..|+.... | ++ ..........++.+.+.. |......+. ..++|.++.|+++|+
T Consensus 219 dkvqm~WN~~gt~LLvLastd-------VD----ktn~SYYGEq~Lyll~t~-g~s~~V~L~---k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTD-------VD----KTNASYYGEQTLYLLATQ-GESVSVPLL---KEGPVHDVTWSPSGR 283 (566)
T ss_pred ceeEEEeccCCceEEEEEEEe-------ec----CCCccccccceEEEEEec-CceEEEecC---CCCCceEEEECCCCC
Confidence 3345778877765543322 2 00 001111111222233333 332222233 378999999999998
Q ss_pred eEEecC---CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecC---ceEEEEecccceEEEEecCCCcce
Q 002264 845 YVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---STIHIYNVRVDEVKSKLKGHQKRI 918 (945)
Q Consensus 845 ~la~~s---d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V 918 (945)
-++++. --++.|||++ +.++..+ ..++-.++-|+| .|++|+.++-+ |.|-|||+.+.+++..+.+-. -
T Consensus 284 EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--t 357 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--T 357 (566)
T ss_pred EEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCC--c
Confidence 777765 3679999986 5666665 467789999999 88888877644 789999999999998887543 4
Q ss_pred eEEEecCCcceeeeecC------CceEEEEec
Q 002264 919 TGLAFSTSLNILVSSGA------DAQVTLCVE 944 (945)
Q Consensus 919 ~~l~~s~dg~~l~s~~~------Dg~i~vWdl 944 (945)
+-+.|+|||.+++|++. |+.++||+.
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 55799999999999865 677899974
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-11 Score=119.44 Aligned_cols=239 Identities=15% Similarity=0.223 Sum_probs=153.6
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEE-EEC------CCcEEEE
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGE------DSQIKFW 612 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~------dg~i~iw 612 (945)
...+++|+.|...++++. +.-.++|+..--+....-+.+.. ....+..--..++++. ||. -+.|.||
T Consensus 7 ~~lsvs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEe-----cCceEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence 345699999999998886 55688998765332221111111 1222222222345554 332 2479999
Q ss_pred ECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccce
Q 002264 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
|=....++..+.... +|.+|.+.++ .+++.- .+.|.+|...+..+.+..+.... +|.|
T Consensus 81 DD~k~~~i~el~f~~---~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~-------------NPkG--- 138 (346)
T KOG2111|consen 81 DDLKERCIIELSFNS---EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-------------NPKG--- 138 (346)
T ss_pred ecccCcEEEEEEecc---ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc-------------CCCc---
Confidence 977777887777643 7999999876 455444 56999999876544443332211 1221
Q ss_pred eccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEE
Q 002264 693 VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY 772 (945)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 772 (945)
..++.-
T Consensus 139 --------------------------------------------------------------------------lC~~~~ 144 (346)
T KOG2111|consen 139 --------------------------------------------------------------------------LCSLCP 144 (346)
T ss_pred --------------------------------------------------------------------------eEeecC
Confidence 011111
Q ss_pred ecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-
Q 002264 773 TNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT- 850 (945)
Q Consensus 773 s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s- 850 (945)
..+...|+.-+ .-|.|++-++...... ....+.. |...|.|++.+.+|..+|++|
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~---------------------~p~~I~A--H~s~Iacv~Ln~~Gt~vATaSt 201 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPN---------------------APSIINA--HDSDIACVALNLQGTLVATAST 201 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcC---------------------CceEEEc--ccCceeEEEEcCCccEEEEecc
Confidence 11111222222 2467777665432211 0111333 999999999999999999999
Q ss_pred CCe-EEEEeccCceEEEEecC--CCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 851 GGK-ISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 851 d~~-i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
.|+ |||||..+|+.+.+++. ....|.|++||| +..+||++|+.|+|.|+.++.
T Consensus 202 kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 788 99999999999999874 234599999999 999999999999999998874
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-12 Score=144.89 Aligned_cols=225 Identities=14% Similarity=0.133 Sum_probs=149.9
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987643 359999999886432 3334455678999999994 344667788777
Q ss_pred EEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 479 vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
+|. ..+.....+..+........|+| ||+.|+..+. +|...+|.++.. .....+...........|+|||++++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 766 55555667766666666777876 5677765554 567777765432 22222223333345678999999998
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC---cEEEEECCCCeeEEEeecCCCCCC
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
..+.. .+...|.+||+.+++........ ......|+|+|+.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 77642 22347999999888765433221 235678999999998877443 3666666 4555555543322 5
Q ss_pred ccEEEEcCC
Q 002264 632 LPRLRFSKE 640 (945)
Q Consensus 632 v~~v~~sp~ 640 (945)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 677888873
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-12 Score=144.16 Aligned_cols=238 Identities=14% Similarity=0.117 Sum_probs=157.3
Q ss_pred CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCccccc
Q 002264 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQ 443 (945)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~~ 443 (945)
..|.+||...+... .+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46888997544321 144567789999999999999988643 469999998876432
Q ss_pred ceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCe-
Q 002264 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK- 519 (945)
Q Consensus 444 ~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~- 519 (945)
+..+.+...+++|+|||+. ++++.+.++ .|.+||..+..+..+..+.......+|+| ||+.|+.++. +|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3334455668899999995 334555555 58999944444566666665566778876 5677776653 455
Q ss_pred -EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 520 -IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 520 -i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
|.++|+.+++.. .+...+.....++|+|||+.++..+. .++...|.+||+.+++......+. ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCCC---CCCCceECCCCC
Confidence 555565554432 23333344557899999999988754 223457999999888765332221 234568999999
Q ss_pred EEEEEEC---CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 599 HFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 599 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
+++..+. .+.|+++++..+ ....+..+. +.+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCC--CCCCCCccCC
Confidence 9888764 346888888544 444444332 2567778876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-12 Score=142.49 Aligned_cols=222 Identities=11% Similarity=0.027 Sum_probs=152.3
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEEC---CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc--
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~-- 476 (945)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 5567889999999999999988764 467999999887543 34456677889999999995 3456666665
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.+||..+.....+..+........|+| ||+.|+..+. +| .|.+||+..+... .+......+....|+|||+.|
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEE
Confidence 6677855555666776766667778876 5677776653 33 5777787654433 333334456678899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC------CcEEEEECCCCeeEEEeecCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~ 627 (945)
+..... .+...|.+||+.++.. +.+... . .+....|+|+|+.|+..+.+ ..++++|+..+.. ..+...
T Consensus 349 a~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~- 422 (435)
T PRK05137 349 AFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP- 422 (435)
T ss_pred EEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC-
Confidence 887642 2345789999865543 333221 1 35668899999998876542 3688888876655 344322
Q ss_pred CCCCccEEEEcC
Q 002264 628 GLPNLPRLRFSK 639 (945)
Q Consensus 628 ~~~~v~~v~~sp 639 (945)
..+...+|+|
T Consensus 423 --~~~~~p~Wsp 432 (435)
T PRK05137 423 --GDASDPAWSP 432 (435)
T ss_pred --CCccCcccCC
Confidence 2456778876
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=142.33 Aligned_cols=269 Identities=14% Similarity=0.153 Sum_probs=209.4
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
...-..+.++.+|++|+.|+..|.|-.+|+.++.... .+. -...|.++.|..+.+ +|+.+ ..+.+.|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEecCCCc
Confidence 3456789999999999999999999999999976544 222 355789999998887 56655 4788999999999
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.+.. .|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 99999866 458888888753 67888899999999999999999888888888999999998887777765 999
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
|.+|.....+++..+..|.+ .+.++++.++|.++++.|.|..++|||++....+.++..+ + +...+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Ccccccccccc-cee
Confidence 99999999999999999987 8999999999999999999999999999988766666542 2 56888888765 344
Q ss_pred EEECCCcEEEEECCCCc--cccccccCCccccccCcceeeeecccccceeccCC
Q 002264 646 VTTADNGFKILANAIGL--RSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
.+ ....+.||.-.-.. ........|. ..++|..+.|.|-...|-.|-.
T Consensus 350 ~~-~G~~v~iw~d~~~~s~~~~~pYm~H~---~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 350 LS-YGDHVQIWKDALKGSGHGETPYMNHR---CGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred ee-cCCeeeeehhhhcCCCCCCcchhhhc---cCcccccceeccHHHeeecccc
Confidence 43 34479999642220 1111111111 2346888888887766644433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=143.16 Aligned_cols=260 Identities=13% Similarity=0.106 Sum_probs=160.9
Q ss_pred HHHhhhcCCCCCC--cceeecCCCC------ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEe--CcCcEEEE
Q 002264 303 EQLMKRLRPAPSA--EEVTYSSSRH------QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLW 372 (945)
Q Consensus 303 ~~~~~~~~~~~~~--~~v~~~~~~~------~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs--~dg~i~iw 372 (945)
..+.++++..++. ..++|..... .+|-.+...........+...+.+.+|||||+.++.+.. .+..|.+|
T Consensus 149 d~i~~~ltg~~g~f~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~ 228 (429)
T PRK03629 149 DEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQ 228 (429)
T ss_pred HHHHHHhcCCCCccCCeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEE
Confidence 3445555555422 3355554321 144444333334444567779999999999997544432 23579999
Q ss_pred EcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-ECCC--cEEEEEccCCcccccceeecc
Q 002264 373 ELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDA 449 (945)
Q Consensus 373 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~ 449 (945)
++.+++... +....+.+..++|||||+.|+.. +.+| .|.+||+++++.. .+..
T Consensus 229 dl~~G~~~~--------------------l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~ 284 (429)
T PRK03629 229 TLANGAVRQ--------------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTD 284 (429)
T ss_pred ECCCCCeEE--------------------ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccC
Confidence 998875431 11122334568999999998865 4444 5889999887543 2334
Q ss_pred ccccEEEEEEecCCCeeEEEEEeC-CCcEEEE--eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEE
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAW 523 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~s~-d~~i~vw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw 523 (945)
+...+....|+|||+ .|+..+. ++...+| |..+.....+...........|+| +|++++..+.+ ..|.+|
T Consensus 285 ~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 285 GRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred CCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEE
Confidence 555678999999999 4554443 4454555 544444455544444556677766 66777766543 357888
Q ss_pred EccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
|+.++.... +... .......|+|||+.|+..+.++ +...+.++++ ++...+.+.++.. .+...+|+|
T Consensus 361 dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 361 DLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred ECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 987765443 2221 2234678999999999888632 2445788887 4555566666544 566677776
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-12 Score=130.66 Aligned_cols=351 Identities=11% Similarity=0.084 Sum_probs=231.2
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
-++..++|||.|.+ |++.. -..|.+|.......+.. --...|..+.|||.++||.+=
T Consensus 33 ~p~~~~~~SP~G~~-l~~~~-~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~tw 89 (561)
T COG5354 33 WPVAYVSESPLGTY-LFSEH-AAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVTW 89 (561)
T ss_pred cchhheeecCcchh-eehhh-ccceEEccccchhheee---------------------eecCCceecccCcccceeeee
Confidence 48999999999995 77654 45689998776654321 123479999999999999986
Q ss_pred ECCC---------------cEEEEEccCCcccccceeecccccc--EE-EEEEecCCCeeEEEEEeCCCcEEEEeCCCc-
Q 002264 425 FTKH---------------LIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGR- 485 (945)
Q Consensus 425 ~~dg---------------~i~vwd~~~~~~~~~~~~~~~h~~~--v~-~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~- 485 (945)
+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+.+ +++-- -...++|++.++.
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCcc
Confidence 5433 49999999987665 34444433 44 688998887 44332 2456888884322
Q ss_pred eEEEecCC-CCCEEEEEeeecCCccEEEE-----EEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 486 KLFNFEGH-EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 486 ~~~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
....+... ...+....|+|.+++..|+. .+.++++++|.+.....+.........-..+.|.+.|+++++-...
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 22222222 24577778888766666554 3567889999988666655444333333567899999988764321
Q ss_pred C-------CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 560 K-------DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 560 ~-------d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
. -++..++++++......... ... .+|...+|.|.++.+++.+ .+-.+.++|++.. ....+...
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~---- 316 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEK-DLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ---- 316 (561)
T ss_pred eeecccceeccceEEEEeecccccceec-ccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc----
Confidence 1 13567889988744333222 223 3799999999988877755 7888999999776 44433322
Q ss_pred CccEEEEcCCCCEEEEEECC---CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccC
Q 002264 631 NLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (945)
.=+.+.|+|.+++++.++-| |.+-+|+......+...+.+.. ..-..|+|||+++.+.......
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-------~s~~~wspd~qF~~~~~ts~k~------ 383 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-------TSYCDWSPDGQFYDTDTTSEKL------ 383 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-------ceEeeccCCceEEEecCCCccc------
Confidence 33778899999999998775 7899999987755544444432 2334789999987644332211
Q ss_pred CCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeec
Q 002264 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN 785 (945)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d 785 (945)
-.|..+++|++.... ....+.+.|.|.|++..+.+.+
T Consensus 384 -------------------------~~Dn~i~l~~v~g~~----------------~fel~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 384 -------------------------RVDNSIKLWDVYGAK----------------VFELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred -------------------------ccCcceEEEEecCch----------------hhhhhhccccCCcccceeeccC
Confidence 235788999986311 1234566777777766665555
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-12 Score=134.26 Aligned_cols=482 Identities=12% Similarity=0.101 Sum_probs=280.4
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc------------cccceeeccccccEEEEEEecCCCeeEEEEEe
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND------------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s 472 (945)
......|++|+....++|+|+.||.++|..+.+... +..-.++.||++.|.-+.|+.+.+ .|-|+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 345788999999999999999999999998865321 122236889999999999999888 789999
Q ss_pred CCCcEEEEe-CCCceEEEe--cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 473 DDKLIKVWE-LSGRKLFNF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 473 ~d~~i~vwd-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
.+|.|.+|- ..|.-.... ....+.|.+++|+. +|..+...-.||.|.+=.++ +..++--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeec-cceecchhcchheccceeeccc
Confidence 999999999 666543222 22456688888865 67888888888888765543 2333333334445567899999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCc-------eeeEeccc-c--CcceEEEEE--------cCCCCEEEEEECCCcEEE
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGT-------IKRTYAGF-R--KKSNGVVQF--------DTTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~-------~~~~~~~~-~--~~~~~~~~~--------~~~~~~l~~~~~dg~i~i 611 (945)
.+.++.+-. .|.+.+||....- +.....+. . ...+..+.| -|+...++++-..|.+.+
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887764 7889999865321 10111110 0 011333333 357789999999999998
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC---------cEEEEECCCCccccccccCCccccccCccee
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN---------GFKILANAIGLRSLRAVENPPFEALRTPIES 682 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg---------~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~ 682 (945)
..-.+......+... -.+..+.|+++|.+||+++.+. .|.++..- | ....+++ .....|++
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G-~i~gtlk-----vpg~~It~ 313 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-G-HIVGTLK-----VPGSCITG 313 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-h-hheEEEe-----cCCceeee
Confidence 876554443444332 2678999999999999998752 34444321 1 2222222 22345777
Q ss_pred eeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccC-C---CCCCcccccceeecCCcceeeecC
Q 002264 683 VALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD-V---TDKPKPWQLAEIVDSGQCRLVTMP 758 (945)
Q Consensus 683 v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---d~~i~vw~~~~~~~~~~~~~~~~~ 758 (945)
+.|-..|-.++-+..+... +....|.-....+ ....+.... . .-.|.+||..+....-.
T Consensus 314 lsWEg~gLriA~Avdsfiy-fanIRP~ykWgy~---------e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------- 376 (1189)
T KOG2041|consen 314 LSWEGTGLRIAIAVDSFIY-FANIRPEYKWGYI---------EETVVYVYQKEELPQYGIMFWDTKTNEKTVK------- 376 (1189)
T ss_pred eEEcCCceEEEEEecceEE-EEeecccceEEEe---------eeEEEEEEccCCCcceEEEEEecccChhhhh-------
Confidence 7777777665543332111 0000000000000 000000110 0 12345666553211110
Q ss_pred CCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEe
Q 002264 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (945)
Q Consensus 759 ~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~ 838 (945)
.-....++++..+--.|+.-..+|.+.-++-- ...+ +.....+.+.- |..+.. .-..|.-.-
T Consensus 377 ----~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~l----e~~~---~~~~l~LCNSI-GT~lD~------kytdirP~F 438 (1189)
T KOG2041|consen 377 ----TVTHFENMAFYREHCVLINRQDDGVIPEYSTL----ENRS---RVYFLQLCNSI-GTSLDY------KYTDIRPKF 438 (1189)
T ss_pred ----hhcceeehheecccEEEEeccccCCCcchhhh----hccc---ceEEEeeeccc-CCcCCC------CcceeeeeE
Confidence 11223456676666666666666666544210 0000 01111111111 111110 011122122
Q ss_pred ecCCCceEEecCCCeEEEEeccCceE--------------------------------EEEecCCCCCeeEEEeecCCCc
Q 002264 839 LSKNDSYVMSATGGKISLFNMMTFKV--------------------------------MTTFMSPPPASTFLAFHPQDNN 886 (945)
Q Consensus 839 ~s~dg~~la~~sd~~i~iwd~~~~~~--------------------------------~~~~~~h~~~i~~l~~s~~~~~ 886 (945)
..-++.+++.+|...+.+|.....+. ..++.|..++|.+++.|. +
T Consensus 439 v~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k 515 (1189)
T KOG2041|consen 439 VCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---K 515 (1189)
T ss_pred EEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---e
Confidence 22367788888888888886431110 123445566788888764 6
Q ss_pred eEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 887 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
+|.++-..|.|+-|.+.++-+..... -+..|.+++.+-+...++....-|.+.+.||
T Consensus 516 ~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dL 572 (1189)
T KOG2041|consen 516 FLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDL 572 (1189)
T ss_pred EEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeec
Confidence 88899999999999999876555443 3456777777777666666666666655554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=144.32 Aligned_cols=245 Identities=18% Similarity=0.147 Sum_probs=153.0
Q ss_pred eeecCCCC---ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeC-c--CcEEEEEcCCCCccccccccccccc
Q 002264 318 VTYSSSRH---QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-N--GEITLWELAMRDRLVSKPFKIWDMA 391 (945)
Q Consensus 318 v~~~~~~~---~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~-d--g~i~iwd~~~~~~~~~~~~~~~~~~ 391 (945)
+.|..... .+|-.+...........+...+.+.+|||||+. |+..+. + ..|.+||+.+++...
T Consensus 166 iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~---------- 234 (427)
T PRK02889 166 IAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLATGRRRV---------- 234 (427)
T ss_pred EEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCCCCEEE----------
Confidence 55554332 255555433444455678889999999999997 544442 2 369999998876432
Q ss_pred ccCcccccccccCCCccEEEEEEcCCCCEEEE-EECCCcEEEEEc--cCCcccccceeeccccccEEEEEEecCCCeeEE
Q 002264 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVGV-AFTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468 (945)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las-~~~dg~i~vwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l 468 (945)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..+.+......|+|||+. ++
T Consensus 235 ----------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~ 299 (427)
T PRK02889 235 ----------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IY 299 (427)
T ss_pred ----------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EE
Confidence 2223345668999999998874 567777666654 4443 22 34455556677899999994 23
Q ss_pred EEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCeeEEecCCCCeEEE
Q 002264 469 VTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 469 ~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~ 543 (945)
+++..++...+|. ..+.....+...........|+| +|++|+..+.++ .|.+||+.+++.... .. ......
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~ 375 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDES 375 (427)
T ss_pred EEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccC
Confidence 3344456667776 34433333332233344566766 667888776554 699999987765432 22 223467
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
..|+|||+.|+..+..+ +...+++.+. ++.....+..+.. .+...+|+|
T Consensus 376 p~~spdg~~l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 376 PSFAPNGRYILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred ceECCCCCEEEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 89999999999887532 3456777777 4555555544333 455566765
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-11 Score=134.19 Aligned_cols=151 Identities=20% Similarity=0.293 Sum_probs=126.7
Q ss_pred EEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCc
Q 002264 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (945)
Q Consensus 350 v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~ 429 (945)
+.++++.-+ +++|+.-+.|.+|+....+.. ..+.||.+.|.++.|+-||+++++.+.|.+
T Consensus 139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEEE-EEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcc
Confidence 345666654 889999999999998722111 138899999999999999999999999999
Q ss_pred EEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCC-CEEEEEeeecCCc
Q 002264 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-PVYSICPHHKENI 508 (945)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 508 (945)
+++|++++++.... +.-+|+..|+.+.|.|. .++|++.|.+.++|+..+..+..+.+|.. .+..++..+ +.
T Consensus 199 iRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~ 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GV 270 (967)
T ss_pred eeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC--Cc
Confidence 99999999887652 45689999999999987 58999999999999988888889988865 588888765 44
Q ss_pred cEEEEEEcCCeEEEEEccCC
Q 002264 509 QFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~ 528 (945)
..+++++.|+.+++||+...
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEeeccCcchhhhhhhcc
Confidence 78999999999999997653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-12 Score=131.43 Aligned_cols=252 Identities=12% Similarity=0.129 Sum_probs=165.9
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE-----cCCCC
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-----SPDGN 419 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~-----s~~g~ 419 (945)
+.++...++-.|++|.+-- ...+.+|+...+..+.. ++.+..+.+- ..+|=+| .|.+-
T Consensus 124 g~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence 3566777777888755433 45788999876544321 1112223332 2223333 35677
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v 497 (945)
-|+.|-.-|.|.+.|....+ +..+.... -.+..|+++.|-|.++. .|+.+-.+|.+.++|.. +....
T Consensus 187 dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~---------~~~~~ 255 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE---------IVCGA 255 (636)
T ss_pred ceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc---------ccccC
Confidence 78889889999999876522 22111111 13468999999998876 66777789999999841 11111
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEc-cCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLY-DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
+..++..-.++..+.... |-- .+...+..+......|...+|+|||++|++.+. |+.++|||..+.++
T Consensus 256 t~p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQEL 324 (636)
T ss_pred CCCcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHH
Confidence 111111112222332221 111 111333334444557999999999999999995 99999999999888
Q ss_pred eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
+..+...-+ ...|++|+|||++|++|++|--|.||.+..++.+..-+ +|...|..|+|.
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 776665555 68899999999999999999999999999998887655 455699999998
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-12 Score=141.93 Aligned_cols=227 Identities=14% Similarity=0.116 Sum_probs=145.6
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeC---cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
........|...+.+.+|||||++ |+..+. +..|.+||+.+++... +..+.+...+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~ 252 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGA 252 (433)
T ss_pred CCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccC
Confidence 344455667889999999999997 554442 3469999998776431 2223344567
Q ss_pred EEEcCCCCEEEE-EECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CCCc--EEEEeCCCc
Q 002264 412 VAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKL--IKVWELSGR 485 (945)
Q Consensus 412 i~~s~~g~~las-~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d~~--i~vwd~~~~ 485 (945)
++|||||+.|+. .+.+| .|++||+.+++.. .+..+.......+|+|||+ .++.++ .++. |.++|..+.
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCC
Confidence 899999998764 45555 5999999887543 3445555667899999999 455444 4555 556664333
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
....+..+.......+|+| +|+.|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+
T Consensus 327 ~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g 401 (433)
T PRK04922 327 SAERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GG 401 (433)
T ss_pred CeEEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CC
Confidence 3334433333444677766 567777665433 6899998776654 332 22234567899999999887653 34
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
...|+++++.. ...+.+..+.. .+...+|+|
T Consensus 402 ~~~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 402 RGVLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred ceEEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 56788998854 34444443322 445556665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-12 Score=138.61 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=163.4
Q ss_pred HHHhhhcCCCCCC--cceeecCCCC-------ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEe--CcCcEEE
Q 002264 303 EQLMKRLRPAPSA--EEVTYSSSRH-------QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITL 371 (945)
Q Consensus 303 ~~~~~~~~~~~~~--~~v~~~~~~~-------~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs--~dg~i~i 371 (945)
+.+++.++..++. ..|.|..... .+|-.+...........|...+.+.+|||||+.|+.+.. .+..|.+
T Consensus 151 d~i~~~ltg~~g~f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~ 230 (435)
T PRK05137 151 DAIYERLTGEKGYFDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYL 230 (435)
T ss_pred HHHHHHHhCCCCcCCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEE
Confidence 4455555554422 3366654311 255544433444555678889999999999997444432 2468999
Q ss_pred EEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE-EEECCCc--EEEEEccCCcccccceeec
Q 002264 372 WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VAFTKHL--IQLYSYAGSNDLRQHSQID 448 (945)
Q Consensus 372 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la-s~~~dg~--i~vwd~~~~~~~~~~~~~~ 448 (945)
||+.+++... +..+.+.+.+.+|||||+.|+ +.+.++. |.+||+.+++.. .+.
T Consensus 231 ~dl~~g~~~~--------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt 286 (435)
T PRK05137 231 LDLETGQREL--------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLT 286 (435)
T ss_pred EECCCCcEEE--------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----Ecc
Confidence 9998876431 334556778899999999876 4455554 777788876543 355
Q ss_pred cccccEEEEEEecCCCeeEEEEEe-CCC--cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEE
Q 002264 449 AHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKA 522 (945)
Q Consensus 449 ~h~~~v~~l~~s~~~~~~~l~s~s-~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~i 522 (945)
.+........|+|||+. ++..+ .++ .|.+||..+.....+..+...+....|+| +|+.|+..+.+ ..|.+
T Consensus 287 ~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~ 362 (435)
T PRK05137 287 DSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGV 362 (435)
T ss_pred CCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEE
Confidence 56666778999999994 44443 333 57788855555555554555566677876 56777776543 35778
Q ss_pred EEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC--ceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
||+..+... .+.. ...+..+.|+|||+.|+..+...... ..++++|+..+.. +.+.. .. .+...+|+|
T Consensus 363 ~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 363 MKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EECCCCceE-eccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 887554432 2222 23467889999999998776432221 4788888876554 33332 11 344456665
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=126.33 Aligned_cols=169 Identities=18% Similarity=0.241 Sum_probs=127.6
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhhCCCC-C--------HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHH
Q 002264 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFFF-N--------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFF 74 (945)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~-~--------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (945)
.++|+.|||+.||...||.++|..+.+|+|+.. . =..+|.+|..|+.++|++.+..+.+.-.+. ...+.|
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~F 103 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELFF 103 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHHH
Confidence 578999999999999999999999999999987 2 247899999999999999999985332222 224899
Q ss_pred HHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcc-cCCchHHHHHHHHHHHhhccC
Q 002264 75 EIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSK-YGDTKTARGIMLIELKKLIEA 153 (945)
Q Consensus 75 ~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~~~~~~r~~l~~~l~~~~~~ 153 (945)
.+++|+++||++.+..++|++|++.++.|+...+++.++.|...|..--++.....+- +--....|.++.+.+...|-.
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL~ 183 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAILA 183 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888888888776544432221110 000346688888888776644
Q ss_pred CccccccccCCCCC-chHHHHHHHHHHHHH
Q 002264 154 NPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (945)
Q Consensus 154 ~~~~~~~~~~~~~p-~~rL~~ll~q~~~~q 182 (945)
..- .+ ..+|..|++.-+..|
T Consensus 184 ~~~---------~~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 184 SQE---------HESEPKLPFLLKLISWAQ 204 (228)
T ss_pred Hhc---------ccccchHHHHHHHHHHHH
Confidence 221 11 457888885544444
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7e-10 Score=112.34 Aligned_cols=376 Identities=13% Similarity=0.138 Sum_probs=205.9
Q ss_pred eeecCCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEE----Ee--CcCcEEEEEcCCCCccccccccccccc
Q 002264 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----GS--SNGEITLWELAMRDRLVSKPFKIWDMA 391 (945)
Q Consensus 318 v~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llas----gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~ 391 (945)
+.|.... .+|......+...++..|-+-|+-..|+|+|+.+.++ |+ ..+.+.+.+.+.|+...-
T Consensus 53 IiFt~~D-dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi--------- 122 (668)
T COG4946 53 IIFTCCD-DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI--------- 122 (668)
T ss_pred EEEEech-HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE---------
Confidence 4444322 3888888888999999999999999999999974442 22 234577777777765421
Q ss_pred ccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCc----EEEEEccCCcc-cccceeeccccccEEEEEEecCCCee
Q 002264 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL----IQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLL 466 (945)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~----i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~~ 466 (945)
..+ | ...-.-.-|+|||+.+++...-.- -.+|.+..... .. .+ .-++.+.+.+- ||
T Consensus 123 --------Tyf-G-r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg--- 183 (668)
T COG4946 123 --------TYF-G-RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DG--- 183 (668)
T ss_pred --------EEe-c-cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CC---
Confidence 112 2 112223569999999988754322 23344332111 11 11 23445555553 33
Q ss_pred EEEEEeCCC------------cEEEEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee-
Q 002264 467 CVVTCGDDK------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR- 531 (945)
Q Consensus 467 ~l~s~s~d~------------~i~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~- 531 (945)
.++.|-.-- .=++|- ..|+....+....+.|++-.+. .++..+....||.=.+|..+-...-
T Consensus 184 ~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDl 260 (668)
T COG4946 184 IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDL 260 (668)
T ss_pred EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchh
Confidence 233332111 123555 2332333332223333322211 1123333344444444433221111
Q ss_pred -EEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE-------------------------------
Q 002264 532 -VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT------------------------------- 579 (945)
Q Consensus 532 -~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~------------------------------- 579 (945)
.....+ .-.+-..+.||+.++... .|.|++||..+.+..+.
T Consensus 261 rrHTnFt--dYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd 333 (668)
T COG4946 261 RRHTNFT--DYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD 333 (668)
T ss_pred hhcCCch--hccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc
Confidence 110001 111122345666655442 44566666543221110
Q ss_pred --------------------ec-cccCcceEEEEEcCCCCEEEEEECCC-cEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 580 --------------------YA-GFRKKSNGVVQFDTTQNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 580 --------------------~~-~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
++ ++.. .+.-..+..+++-++.|..|| .+-|+|.++++....... .+.|.++..
T Consensus 334 ~ia~VSRGkaFi~~~~~~~~iqv~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~---lg~I~av~v 409 (668)
T COG4946 334 YIALVSRGKAFIMRPWDGYSIQVGKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD---LGNIEAVKV 409 (668)
T ss_pred EEEEEecCcEEEECCCCCeeEEcCCCC-ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC---ccceEEEEE
Confidence 00 1111 244445555666788888888 899999998876655433 347999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC
Q 002264 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
+|+|++++++.....|.+.|+.++...+ .... ..+-|...+|+|+++++|.+...+...
T Consensus 410 s~dGK~~vvaNdr~el~vididngnv~~--idkS----~~~lItdf~~~~nsr~iAYafP~gy~t--------------- 468 (668)
T COG4946 410 SPDGKKVVVANDRFELWVIDIDNGNVRL--IDKS----EYGLITDFDWHPNSRWIAYAFPEGYYT--------------- 468 (668)
T ss_pred cCCCcEEEEEcCceEEEEEEecCCCeeE--eccc----ccceeEEEEEcCCceeEEEecCcceee---------------
Confidence 9999999999999999999999884322 1111 123588899999999998776644332
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
..|+++|+.. +....++.+ ...=.+-+|.|||++|...+.
T Consensus 469 ------------------q~Iklydm~~----~Kiy~vTT~-----ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 469 ------------------QSIKLYDMDG----GKIYDVTTP-----TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ------------------eeEEEEecCC----CeEEEecCC-----cccccCcccCCCCcEEEEEec
Confidence 6778888763 222222222 122245688999998876553
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-11 Score=124.28 Aligned_cols=311 Identities=10% Similarity=0.116 Sum_probs=199.2
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.......++|++|+ ++|.+ .++.|.|++..++..+.. -....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578889999998 57765 478999999988753321 11227899999999999976
Q ss_pred E-----ECC-----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC
Q 002264 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (945)
Q Consensus 424 ~-----~~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 493 (945)
= ..+ ..+.+|+++++.... .+..-...-++..|+.|.. ++.=-..+.+.+|+..+.....-+-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 2 112 347899999953322 2222222226899999876 22222356899999333322222335
Q ss_pred CCCEEEEEeeecCCccEEEE-----EEcCCeEEEEEccCCCeeEEec---CCCCeEEEEEEcCCCCEEEEE-eecCC---
Q 002264 494 EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGSRLFSC-GTSKD--- 561 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~-~~~~d--- 561 (945)
...|+.+.++|.+....+++ .|.-+.|++|.+.......... .....-..+.|++-|.-|++. +.+-|
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 67788888888755455554 3455679999765222111111 111122457788877755433 22222
Q ss_pred ----CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE--ECCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 562 ----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 562 ----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
|+..++++++....... .....++|.++.|++++..++++ -.--.+.|||++ +.++..+.. ++=+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V--~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSV--PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEEE--ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccce
Confidence 35678888887333333 33334589999999999877664 366789999985 455555532 245899
Q ss_pred EEcCCCCEEEEEECC---CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 636 RFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 636 ~~sp~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
-|+|.|++++.+|-+ |.|-|||+.+. ..+..+... ..+-..|+|||++++++...
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~-------~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAA-------NTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch-hhccccccC-------CceEEEEcCCCcEEEEEecc
Confidence 999999999998875 78999999885 444443322 23456899999998765443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-11 Score=130.76 Aligned_cols=279 Identities=14% Similarity=0.127 Sum_probs=189.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC--ccEEEEEEcCCCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP--ISVSRVAWSPDGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~i~~s~~g~~ 420 (945)
|-+++++.++-. +|+|| | ..-.|.+||+..+..+.. ++ +.+.+..|. +.+.. .+-+
T Consensus 6 ~~~~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~--~~-----------~~~~~~~H~~e~~~~l-----~~~~ 63 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRH--LI-----------QSKILEVHRGEGKVKL-----LSGK 63 (967)
T ss_pred ccccccchhhcc--ceeee-c-CCCceEEeeCCchhHhhh--hh-----------hhccccccccccccee-----ccce
Confidence 334566666655 55444 3 346799999998876632 11 112244450 11110 2334
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE--
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV-- 497 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v-- 497 (945)
++++..-+.+..=+.... .+..-...|....+..+.+ .++.++.++.+.+|| ..+..+..........
T Consensus 64 ~v~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~ 134 (967)
T KOG0974|consen 64 IVTCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY 134 (967)
T ss_pred EEEEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEE
Confidence 555544333333222211 1112333444455666666 677777889999999 6665555544322211
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.++-+-.+.+.-++++|+.-+.|.+|+....+....+.+|.+.|.++.++.||+++++++. |..+++|++.+.+..
T Consensus 135 ~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 135 SSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVL 210 (967)
T ss_pred eEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----Ccceeeeeccccccc
Confidence 1222223345578999999999999998865555678899999999999999999999996 899999999998877
Q ss_pred e-EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 578 R-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 578 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
. +.-+|.. .+..++|.|+ .+++++.|.+.++|+.+. ..+..+..|.. ..|..++..++...+++++.|+.+++|
T Consensus 211 ~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 211 GCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred Ccccccccc-eeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhh
Confidence 6 5566766 7888899987 999999999999997654 44446665543 368999999999999999999999999
Q ss_pred ECCCC
Q 002264 657 ANAIG 661 (945)
Q Consensus 657 ~~~~~ 661 (945)
++...
T Consensus 286 ~l~~r 290 (967)
T KOG0974|consen 286 DLNGR 290 (967)
T ss_pred hhhcc
Confidence 98654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.6e-11 Score=126.68 Aligned_cols=311 Identities=14% Similarity=0.185 Sum_probs=182.2
Q ss_pred EEEEEcC----CeEEEEEccCCCeeEEe---cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC--Cce--eeE
Q 002264 511 IFSTAID----GKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI--KRT 579 (945)
Q Consensus 511 l~s~~~d----g~i~iwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~--~~~--~~~ 579 (945)
++.|+.. +.|.+|+++........ .........++++|++++|+++.......+.|..|++.. +++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3455554 68888888443332221 123345667889999999999875322467888888765 333 223
Q ss_pred eccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CeeEEE---eec--------CCCCCCccEEEEcCCCCEEEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTS---TDA--------EGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~--------~~~~~~v~~v~~sp~g~~l~~ 646 (945)
... .....+.++++|++++++++. .+|.|.++++.. +.+... +.. ........++.++|+|+++++
T Consensus 82 ~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred ecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 322 222456799999999999988 689999999987 444333 111 011234678999999999888
Q ss_pred EEC-CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCC
Q 002264 647 TTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (945)
Q Consensus 647 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (945)
... ...|.+|++......+...... .......-..++|+|+|++++
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Y-------------------------------- 207 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAY-------------------------------- 207 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEE--------------------------------
T ss_pred EecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEE--------------------------------
Confidence 754 3479999997653212110000 001122356789999998875
Q ss_pred CCCccccCCCCCCcccccceee-cCCcceee-ecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCC
Q 002264 726 DKPRTVDDVTDKPKPWQLAEIV-DSGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSG 802 (945)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~ 802 (945)
++...+++|.++++.... .......+ .++...........++++|||++|.++.. .+.|.+|++.... +
T Consensus 208 ----v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~----g 279 (345)
T PF10282_consen 208 ----VVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT----G 279 (345)
T ss_dssp ----EEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT----T
T ss_pred ----EecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC----C
Confidence 344455677777766110 01111111 12221112236789999999999877665 6889999873211 1
Q ss_pred ceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEec--cCceEEEEec-CCCCCeeE
Q 002264 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNM--MTFKVMTTFM-SPPPASTF 877 (945)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~--~~~~~~~~~~-~h~~~i~~ 877 (945)
.... +.. ... .......++++|+|++|++++ ++.|.+|++ ++|.+...-. ..-....|
T Consensus 280 ~l~~--------------~~~-~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 280 TLTL--------------VQT-VPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp TEEE--------------EEE-EEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred ceEE--------------EEE-EeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 1111 000 110 234478899999999999987 577999876 4666544432 23345677
Q ss_pred EEe
Q 002264 878 LAF 880 (945)
Q Consensus 878 l~~ 880 (945)
|.|
T Consensus 343 i~f 345 (345)
T PF10282_consen 343 IVF 345 (345)
T ss_dssp EEE
T ss_pred EeC
Confidence 766
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-12 Score=123.21 Aligned_cols=272 Identities=11% Similarity=0.119 Sum_probs=190.7
Q ss_pred CCcEEEEEEeCCCCe-EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 344 GSTVISMDFHPSHQT-LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~-llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
...|+.++|--+++. ++...+.|..+............. .|+. .........|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~---------~~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDA---------KTVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccc---------cccccccccccchhhc--CCEEE
Confidence 447788888766653 333333566666666655443321 1222 1233455667766654 34677
Q ss_pred EEECCCcEEEEEccCCcccc-cceeeccccccEEEEEEecCCCeeEEEEEeCC--CcEEEEe-CCCceEEEecC------
Q 002264 423 VAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEG------ 492 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd-~~~~~~~~~~~------ 492 (945)
+|-.+|.+.+|..+.+..-. ....+. -...+..+.-++.... ++++||.. ..+++|| ...+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 78889999999998543111 011222 2355777777777775 67779998 8899999 55544433221
Q ss_pred -CCC--CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 493 -HEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 493 -~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
-.- .++++.|.+..+...|++++.-+.+++||.+.+.. +..+.....+++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 112 34566776654468899999999999999987554 4577778889999999999999999875 889999
Q ss_pred EeCCCCceeeE-eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
||++.++.... +.+..+ .++++..+|.+.+++++|-|..++|+|+.+.+++....... .++++.+.++
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~~ 342 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRDD 342 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecCC
Confidence 99999998877 666665 89999999999999999999999999999977766554433 4566666553
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-10 Score=114.11 Aligned_cols=303 Identities=10% Similarity=0.088 Sum_probs=189.1
Q ss_pred CCeEEEEEccCCCeeE---EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC--CCCceeeEe--ccccCcceE
Q 002264 517 DGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTY--AGFRKKSNG 589 (945)
Q Consensus 517 dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~--~~~~~~~~~--~~~~~~~~~ 589 (945)
++-|.+|++++..... .........+-++|+|+++.|.++...+ .++.|.-|.+ .+|++...- ..... ..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~-~~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG-EEGGVAAYRIDPDDGRLTFLNRQTLPGS-PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC-CcCcEEEEEEcCCCCeEEEeeccccCCC-CCe
Confidence 5679999998544333 2233445678899999999999887642 2455555544 446543322 11112 347
Q ss_pred EEEEcCCCCEEEEEE-CCCcEEEEECCC-CeeEEEeecCCCCC----------CccEEEEcCCCCEEEEEEC-CCcEEEE
Q 002264 590 VVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTSTDAEGGLP----------NLPRLRFSKEGNLLAVTTA-DNGFKIL 656 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~----------~v~~v~~sp~g~~l~~~~~-dg~i~iw 656 (945)
.+++++++++++++. ..|.|.++.+.. |.+......-.|.+ -+....+.|++++|++.+- --.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 799999999999987 678999999865 54433322111111 2788999999999998754 2379999
Q ss_pred ECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCC
Q 002264 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (945)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (945)
++..+. +...-... . ....--..++|+|+|++.+ ++...++
T Consensus 173 ~~~dg~-L~~~~~~~-v-~~G~GPRHi~FHpn~k~aY------------------------------------~v~EL~s 213 (346)
T COG2706 173 DLDDGK-LTPADPAE-V-KPGAGPRHIVFHPNGKYAY------------------------------------LVNELNS 213 (346)
T ss_pred EcccCc-cccccccc-c-CCCCCcceEEEcCCCcEEE------------------------------------EEeccCC
Confidence 998763 21111111 1 1122356799999999875 4555567
Q ss_pred CCccccccee-ecCCcceee-ecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccc
Q 002264 737 KPKPWQLAEI-VDSGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (945)
Q Consensus 737 ~i~vw~~~~~-~~~~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (945)
+|.+|..... ..-..++.+ .+|.......+..++.+++||++|.++.. ...|.+|.+..
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~------------------ 275 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP------------------ 275 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC------------------
Confidence 8888887753 111122222 45554456677889999999998888765 35777776642
Q ss_pred cCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEecc--CceEEEEec-CCCCCeeEEEee
Q 002264 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM--TFKVMTTFM-SPPPASTFLAFH 881 (945)
Q Consensus 814 ~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~--~~~~~~~~~-~h~~~i~~l~~s 881 (945)
.+|.+....... .+......+.|+++|++|++++ ++.|.+|..+ +|++-.... .......||.|.
T Consensus 276 --~~g~L~~~~~~~-teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 276 --DGGKLELVGITP-TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred --CCCEEEEEEEec-cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 222211100000 0334467889999999999998 3569998765 555533333 244557777775
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-11 Score=121.36 Aligned_cols=244 Identities=10% Similarity=0.125 Sum_probs=179.8
Q ss_pred CCccEEEEEEcCCCC--EEEEEECCCcEEEEEccCCcccccc---eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 405 VPISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQH---SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 405 h~~~V~~i~~s~~g~--~las~~~dg~i~vwd~~~~~~~~~~---~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
-...|++++|.-+++ .+..++.|..+....+......... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 345788888887654 4444446666777776655443321 1233456677777775 34 5888899999999
Q ss_pred Ee-CC----CceEEEecCCCCCEEEEEeeecCCccEEEEEEcC--CeEEEEEccCCCeeEEecCCC---------CeEEE
Q 002264 480 WE-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMGSRVDYDAPG---------HWCTT 543 (945)
Q Consensus 480 wd-~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~ 543 (945)
|. .. ...+..+..+ ..+..+.-++. ...++++||.. ..+.+||+...+.++.-.... -+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 99 42 3344444433 34555544433 33577789999 889999999886665433221 16788
Q ss_pred EEEcCC--CCEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 544 MLYSAD--GSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 544 ~~~s~~--~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
+.|-+. ...+++++. -+.+++||.+.+ +++..|..... .+.++...|+++++++|...|.+..||++.+...
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 899887 788998885 889999999875 46667766555 7999999999999999999999999999999887
Q ss_pred EE-eecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TS-TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~-~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.. +.+- .+.|.++..+|.+++++++|-|..+||+|+++.
T Consensus 283 g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 76 5443 348999999999999999999999999999985
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-11 Score=118.29 Aligned_cols=263 Identities=11% Similarity=0.187 Sum_probs=174.9
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccc-cccCcccccccccCCCccEEEEEEcCCCC--
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM-AACSLPFQASIFKDVPISVSRVAWSPDGN-- 419 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~i~~s~~g~-- 419 (945)
..+-|.+|.|...|.+ ||||..+|.|.++.-..... ..+++... +.-...+-.-.--.-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~---~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK---GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeecccce-EeecCCCCeEEEeecccccc---cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 3458999999999995 99999999999996433221 01111100 00001111100112246789999998654
Q ss_pred EEEEEECCCcEEEEEccCCcccc--------------------------------cceee-ccccccEEEEEEecCCCee
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLR--------------------------------QHSQI-DAHVGAVNDLAFAYPNKLL 466 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~--------------------------------~~~~~-~~h~~~v~~l~~s~~~~~~ 466 (945)
.++..+.|.+|++|.+....... +...+ .+|.--|.++.++.|+.
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-- 177 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-- 177 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--
Confidence 56667789999999886422110 00111 36778899999999998
Q ss_pred EEEEEeCCCcEEEEe--CCCce--EEEecCC-----CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe------e
Q 002264 467 CVVTCGDDKLIKVWE--LSGRK--LFNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS------R 531 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd--~~~~~--~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~ 531 (945)
.++++. |=.|.+|+ ...+. +..++.+ ..-|++..|+|... ..++..+..|+|++.|++.... .
T Consensus 178 t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 667654 88999999 34433 2233333 34578888998754 6888889999999999984321 1
Q ss_pred EEecC----------CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC-CCCceeeEeccccCc-----------c--
Q 002264 532 VDYDA----------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAGFRKK-----------S-- 587 (945)
Q Consensus 532 ~~~~~----------~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~-~~~~~~~~~~~~~~~-----------~-- 587 (945)
+.... --..|..+.|+++|+++++-. --+|.+||+ ...+++.+++.|..- .
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 11111 112678899999999999864 468999999 556777777655321 1
Q ss_pred -eEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 588 -NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 588 -~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
-..++|+.++.++++|+..+.+++|+...|.
T Consensus 331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred heeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2347899888999999999999999966553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-10 Score=120.91 Aligned_cols=312 Identities=12% Similarity=0.156 Sum_probs=180.9
Q ss_pred EEEeecCCCCceEEEEeC--CCCceeeEeccccCcceEEEEEcCCCCEEEEEEC----CCcEEEEECCCC--ee--EEEe
Q 002264 554 FSCGTSKDGDSFLVEWNE--SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE----DSQIKFWDMDNV--NI--LTST 623 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~~--~~~~ 623 (945)
++++......+.|+.|++ .++++...-..........++++|++++|++..+ +|.|..|++... .+ +...
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~ 82 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV 82 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee
Confidence 344442223467777776 5555433222112224566899999999999886 568988887763 33 3333
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCccccccc--cCC------ccccccCcceeeeecccccceec
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAV--ENP------PFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~--~~~------~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
...+. ....++++|++++|+++.. +|.|.++++.....+.... ..+ ..........++.++|+|+++++
T Consensus 83 ~~~g~--~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 83 PSGGS--SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EESSS--CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred ccCCC--CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 32222 4578999999999998875 8999999998742222211 100 00111233567888999887753
Q ss_pred cCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecC-CcceeeecCCCCCCccceEEEEEe
Q 002264 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS-GQCRLVTMPESTDTSSKVVRLLYT 773 (945)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s 773 (945)
. .-....|.+|++...... .....+.++ .......++|+
T Consensus 161 ~------------------------------------dlG~D~v~~~~~~~~~~~l~~~~~~~~~----~G~GPRh~~f~ 200 (345)
T PF10282_consen 161 P------------------------------------DLGADRVYVYDIDDDTGKLTPVDSIKVP----PGSGPRHLAFS 200 (345)
T ss_dssp E------------------------------------ETTTTEEEEEEE-TTS-TEEEEEEEECS----TTSSEEEEEE-
T ss_pred E------------------------------------ecCCCEEEEEEEeCCCceEEEeeccccc----cCCCCcEEEEc
Confidence 2 222256677776532210 011222232 45667899999
Q ss_pred cCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--
Q 002264 774 NSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-- 850 (945)
Q Consensus 774 ~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-- 850 (945)
|+|+++.+... +++|.++++... .+.......+..... ... .......+++||||++|.++.
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~----~g~~~~~~~~~~~~~--------~~~---~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPS----DGSLTEIQTISTLPE--------GFT---GENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETT----TTEEEEEEEEESCET--------TSC---SSSSEEEEEE-TTSSEEEEEECT
T ss_pred CCcCEEEEecCCCCcEEEEeeccc----CCceeEEEEeeeccc--------ccc---ccCCceeEEEecCCCEEEEEecc
Confidence 99999877766 789999987621 122111111100000 011 123578899999999998886
Q ss_pred CCeEEEEecc--Cce--EEEEecCCCCCeeEEEeecCCCceEEEee-cCceEEEEecc--cceEEEEec-CCCcceeEEE
Q 002264 851 GGKISLFNMM--TFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVR--VDEVKSKLK-GHQKRITGLA 922 (945)
Q Consensus 851 d~~i~iwd~~--~~~--~~~~~~~h~~~i~~l~~s~~~~~~lasg~-~dg~v~vwd~~--~~~~~~~l~-~h~~~V~~l~ 922 (945)
.+.|.+|+++ +++ .+..+.........++++| +|++|+++. .++.|.+|++. +|.+...-. ..-....||.
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 5789999984 333 3344443344589999999 788777776 56789999774 665443321 1233455555
Q ss_pred e
Q 002264 923 F 923 (945)
Q Consensus 923 ~ 923 (945)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 4
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=119.75 Aligned_cols=108 Identities=17% Similarity=0.271 Sum_probs=89.5
Q ss_pred CCceeEEeecCCCceEEecC---CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeec---CceEEEEeccc
Q 002264 831 EEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DSTIHIYNVRV 904 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s---d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~---dg~v~vwd~~~ 904 (945)
.++|.+++|+|+|+.+|+.. +.+|.+||++ ++.+..+. ...+..+.||| +|++|++|+. .|.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 45799999999999876553 4679999996 66767764 56788999999 8999998874 46799999999
Q ss_pred ceEEEEecCCCcceeEEEecCCcceeeeecC------CceEEEEec
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGA------DAQVTLCVE 944 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~------Dg~i~vWdl 944 (945)
.+.+.... |. .++.++|+|||++|+|++. |+.++||+.
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 98888776 43 4789999999999999864 788999986
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-10 Score=118.91 Aligned_cols=313 Identities=12% Similarity=0.210 Sum_probs=197.3
Q ss_pred CcceeecCCCCccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeC-----------cCcEEEEEcCCCCccccc
Q 002264 315 AEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-----------NGEITLWELAMRDRLVSK 383 (945)
Q Consensus 315 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~-----------dg~i~iwd~~~~~~~~~~ 383 (945)
..-+.|...|..+|.-.+. ..++.+-|. .|.-+.|||+.+| |+|=+. ...++|||+.+|.....
T Consensus 223 TYL~t~Hk~GI~lWGG~~f--~r~~RF~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs- 297 (698)
T KOG2314|consen 223 TYLVTFHKQGIALWGGESF--DRIQRFYHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS- 297 (698)
T ss_pred eEEEEEeccceeeecCccH--HHHHhccCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccccchhcc-
Confidence 3335555555556765542 234555666 7999999999997 776432 25799999999987643
Q ss_pred ccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCC
Q 002264 384 PFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463 (945)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 463 (945)
|.+ +.+....-.-..||.|++|+|.-..+ .|.||+..+-..+.. +.+ .-..|....|+|.+
T Consensus 298 -F~~--------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 298 -FPV--------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIRDFSWSPTS 358 (698)
T ss_pred -eec--------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCccccCcccCCCc
Confidence 221 22222223347999999999987765 599998765322211 111 33568889999998
Q ss_pred CeeEEEEEeCC-----CcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE----------cCCeEEEEEccC
Q 002264 464 KLLCVVTCGDD-----KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAWLYDT 527 (945)
Q Consensus 464 ~~~~l~s~s~d-----~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~ 527 (945)
. +|+--... ..+-+-. .+++.+++-.-+ .|..+..++..+|.+|+.-- .-..+.|+.++.
T Consensus 359 ~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlf--nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire 434 (698)
T KOG2314|consen 359 N--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLF--NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE 434 (698)
T ss_pred c--eEEEEcccccCCcceEEEEecCccceeeeccce--eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence 8 56533221 2344444 444444443323 35566666677777776532 112345666555
Q ss_pred CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-C---ceeeEeccccCcceEEEEEcCCCCEEEEE
Q 002264 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-G---TIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (945)
.........-...|...+|-|.|+.+++.+. .+...++.+|.+.+ . +++..+.. ...+.+.|+|.|++++++
T Consensus 435 KdIpve~velke~vi~FaWEP~gdkF~vi~g-~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 435 KDIPVEVVELKESVIAFAWEPHGDKFAVISG-NTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVA 510 (698)
T ss_pred cCCCceeeecchheeeeeeccCCCeEEEEEc-cccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEE
Confidence 4444333333456888999999999887764 33466788888773 2 33444433 246779999999999886
Q ss_pred E---CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC------CCcEEEEECCCC
Q 002264 604 G---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKILANAIG 661 (945)
Q Consensus 604 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~------dg~i~iw~~~~~ 661 (945)
+ ..|.+.++|+....+... ....|. ..+.+.|.|.|+++++++. |...++|+.+..
T Consensus 511 ~l~s~~g~l~F~D~~~a~~k~~-~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYADLKDT-ASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EecccccceEEEecchhhhhhc-cCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 5 578999999875333222 222232 4688999999999999876 456677777543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-10 Score=120.92 Aligned_cols=293 Identities=14% Similarity=0.176 Sum_probs=194.6
Q ss_pred CCCCCEEEEEeeecCCccEE-EEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 492 GHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
.+....+.|..+| ||+++ ++|..--.|++||+..-...+.-......|.-.-++.|-..++.... |..|.+..
T Consensus 49 e~p~ast~ik~s~--DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~----DR~IefHa 122 (703)
T KOG2321|consen 49 EMPTASTRIKVSP--DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQN----DRTIEFHA 122 (703)
T ss_pred CCccccceeEecC--CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeec----Cceeeehh
Confidence 3566667777766 66765 55666778999999876666555555555655556655544444332 55555433
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.........++. .-..++++.-..-|++++....|+-++++.|..+..+..... .+++|..++...+|++|+.+
T Consensus 123 k~G~hy~~RIP~----~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 123 KYGRHYRTRIPK----FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINEEHGLLACGTED 196 (703)
T ss_pred hcCeeeeeecCc----CCccccccCCCccEEEeecCcceEEEEccccccccccccccc--cceeeeecCccceEEecccC
Confidence 211111111111 123355555445577777777899999999999888876643 89999999999999999999
Q ss_pred CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcc
Q 002264 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (945)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (945)
|.|-+||.++... ...+.....
T Consensus 197 g~VEfwDpR~ksr-v~~l~~~~~--------------------------------------------------------- 218 (703)
T KOG2321|consen 197 GVVEFWDPRDKSR-VGTLDAASS--------------------------------------------------------- 218 (703)
T ss_pred ceEEEecchhhhh-heeeecccc---------------------------------------------------------
Confidence 9999999986621 111110000
Q ss_pred ccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeecc
Q 002264 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (945)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (945)
+. ..++ ......|+++.|+.+|-.+++|.++|.+.|||+....
T Consensus 219 ------------v~-----------s~pg-~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~------------- 261 (703)
T KOG2321|consen 219 ------------VN-----------SHPG-GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK------------- 261 (703)
T ss_pred ------------cC-----------CCcc-ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-------------
Confidence 00 0000 0133468999999999999999999999999875432
Q ss_pred ccccCCCcccccccccCCCcCCceeEEeecCC--CceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceE
Q 002264 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (945)
Q Consensus 811 ~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d--g~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~l 888 (945)
++...-.+ ..-+|..+.|-+. +..+++.....++|||-.+|+....+.. ...+..+++-| ++-++
T Consensus 262 ---------pl~~kdh~--~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p-~sGm~ 328 (703)
T KOG2321|consen 262 ---------PLLVKDHG--YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVP-GSGMF 328 (703)
T ss_pred ---------ceeecccC--CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeec-CCceE
Confidence 11111111 3457788888664 4566666667799999999999988874 45599999999 77788
Q ss_pred EEeecCceEEEEeccc
Q 002264 889 AIGTEDSTIHIYNVRV 904 (945)
Q Consensus 889 asg~~dg~v~vwd~~~ 904 (945)
++|-+++.+..|=+..
T Consensus 329 f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 329 FTANESSKMHTYYIPS 344 (703)
T ss_pred EEecCCCcceeEEccc
Confidence 8998888777665553
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=127.64 Aligned_cols=223 Identities=13% Similarity=0.115 Sum_probs=142.9
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--c
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~ 476 (945)
+..+...+.+.+|||||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44566789999999999999877643 368999998875432 2233344567899999995 333555555 5
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.+||..+.....+..+........|+| ||+.++..+. +| .|.++|+.+++... +...........|+|||+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 7888954445556666665566677766 5566655543 34 46666776655332 22223334467899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeeEEEeecCCCCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..|+++++..+ ....+..+. +
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 887642 23446899999887654332221 12245899999999887643 35777787543 333443322 2
Q ss_pred CccEEEEcC
Q 002264 631 NLPRLRFSK 639 (945)
Q Consensus 631 ~v~~v~~sp 639 (945)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 566777876
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-11 Score=114.68 Aligned_cols=162 Identities=19% Similarity=0.348 Sum_probs=113.9
Q ss_pred EEEEEEcCCCCEEEEEEC----------CCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 409 VSRVAWSPDGNYVGVAFT----------KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~----------dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
=..+.|+|+|++|+.-.. -|...+|.++....... .+. ...++|.+++|+|+|+.+.+++|..++.|
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~--~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE--SIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc--eeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 346899999998875433 13355665533222111 222 24457999999999996445556678899
Q ss_pred EEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 478 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.+||.+++.+..+. ...++.+.|+| +|+++++++.+ |.|.+||.++.+.+..... ..++.++|+|||++++
T Consensus 86 ~lyd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 86 TLYDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLA 159 (194)
T ss_pred EEEcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEE
Confidence 99997788887775 45678899987 56899988754 6799999997666655433 3478999999999999
Q ss_pred EEeec--CCCCceEEEEeCCCCceeeE
Q 002264 555 SCGTS--KDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 555 ~~~~~--~d~~~~i~iwd~~~~~~~~~ 579 (945)
+++.. ...++.++||+.. |+.+..
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEe
Confidence 88752 2246778999974 555443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-10 Score=115.09 Aligned_cols=315 Identities=12% Similarity=0.090 Sum_probs=190.4
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.=+.+.|||.|.| |+|-.. .-|.+|--.+-..+.. + .| ..|.-+.|||+.+||+|-+
T Consensus 212 Tetyv~wSP~GTY-L~t~Hk-~GI~lWGG~~f~r~~R-------------------F-~H-p~Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 212 TETYVRWSPKGTY-LVTFHK-QGIALWGGESFDRIQR-------------------F-YH-PGVQFIDFSPNEKYLVTYS 268 (698)
T ss_pred eeeeEEecCCceE-EEEEec-cceeeecCccHHHHHh-------------------c-cC-CCceeeecCCccceEEEec
Confidence 4578999999996 887654 4578997554433321 1 14 3688999999999999865
Q ss_pred C-----------CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC
Q 002264 426 T-----------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 426 ~-----------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
. ...++|||+.+|...+.+..+.+....-.-..||.|++ +++--.. .+|.||+ .+-.++-.-.-.
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK--y~Arm~~-~sisIyEtpsf~lld~Kslk 345 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK--YFARMTG-NSISIYETPSFMLLDKKSLK 345 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc--eeEEecc-ceEEEEecCceeeecccccC
Confidence 3 14699999999987775544433333333478999999 7776654 6788999 442222111112
Q ss_pred CCCEEEEEeeecCCccEEEEEEcC-----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC-----
Q 002264 494 EAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD----- 563 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~----- 563 (945)
-..|....|+|. +.+|+.-... .++.+-.+.+.+.+.....+.-.=..+-|-.+|.+|+.-.....+.
T Consensus 346 i~gIr~FswsP~--~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 346 ISGIRDFSWSPT--SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred CccccCcccCCC--cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence 345666677774 3566543321 2344444444444443333322223456777888887654311111
Q ss_pred -ceEEEEeCCCCce-eeEeccccCcceEEEEEcCCCCEEEEEE---CCCcEEEEECCC-C---eeEEEeecCCCCCCccE
Q 002264 564 -SFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN-V---NILTSTDAEGGLPNLPR 634 (945)
Q Consensus 564 -~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~ 634 (945)
.++.|+.++.... +....- . ..+-..+|.|.|+.+++.+ ...++.+|.+++ . +++..+.. ...+.
T Consensus 424 f~n~eIfrireKdIpve~vel-k-e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~ 497 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVVEL-K-ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANT 497 (698)
T ss_pred EeeEEEEEeeccCCCceeeec-c-hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccce
Confidence 1345555554432 222222 2 2566789999999888755 346788888773 2 23344433 25689
Q ss_pred EEEcCCCCEEEEEE---CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 635 LRFSKEGNLLAVTT---ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 635 v~~sp~g~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
+.|+|.|++++.+. ..|.+.++|.............|. ..+.+.|.|.|++++++.....
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~------~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF------AATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc------ccccceECCCCCEEEEeeehhh
Confidence 99999999998764 468899999864211111111111 2456789999999987665443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=126.82 Aligned_cols=243 Identities=12% Similarity=0.036 Sum_probs=148.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCe--EEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT--LLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~--llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (945)
+|-++...............+..-+|||||+. ++++...+| .|.+.++.+++... +
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------l 226 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------I 226 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------e
Confidence 55555433444445555667788899999975 233544444 57777887775432 2
Q ss_pred cCCCccEEEEEEcCCCCEEEEEEC-CC----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAFT-KH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~~-dg----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
....+.....+|||||+.||..+. +| .+.+|++.++..-.......++.+.....+|+|||+. ++++...+|..
T Consensus 227 t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~ 305 (428)
T PRK01029 227 LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRP 305 (428)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCc
Confidence 223344557899999999887653 22 3444777653211111122223334567899999994 23333456655
Q ss_pred EEEe--C--CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC
Q 002264 478 KVWE--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (945)
Q Consensus 478 ~vwd--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 550 (945)
.+|. . .+.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||
T Consensus 306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG 382 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDS 382 (428)
T ss_pred eEEEEECcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCC
Confidence 5554 3 2344555555555667778877 56777766543 46899999877654433 223456788999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (945)
+.|+..+. ..+...|+++|+.+++........ . .+...+|+|-
T Consensus 383 ~~L~f~~~-~~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~ 425 (428)
T PRK01029 383 LHLVYSAG-NSNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAF 425 (428)
T ss_pred CEEEEEEC-CCCCceEEEEECCCCCEEEeecCC-C-cccCceecCC
Confidence 99887654 234678999999887765554322 1 3455677764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-10 Score=126.26 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=141.6
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECC-C--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc--
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTK-H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~d-g--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~-- 476 (945)
+..+...+.+.+|||||+.|+..+.+ + .|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44466788999999999999876543 2 58889998875422 2222233457899999995 3345566665
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCe--EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.++|..+.....+..+.......+|+| ||+.++..+. ++. |.++|+.+++.. .+..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 7777854445566666665667778876 5566655543 444 555566555433 222233334457899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCeeEEEeecCCCCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--QIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+..+.. .+...|.++|+.+++........ ......|+|+|+.++..+. +| .+++++. +|.....+..+. +
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--G 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--C
Confidence 887642 23446778898887654322221 1223579999998887664 33 3777787 455555554432 2
Q ss_pred CccEEEEcC
Q 002264 631 NLPRLRFSK 639 (945)
Q Consensus 631 ~v~~v~~sp 639 (945)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 567788887
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-09 Score=105.02 Aligned_cols=315 Identities=9% Similarity=0.078 Sum_probs=183.7
Q ss_pred EEEEeecCCCCceEEEEeCCC--CceeeEeccccCcceEEEEEcCCCCEEEEEEC---CCcEEEEECCC--CeeEEEeec
Q 002264 553 LFSCGTSKDGDSFLVEWNESE--GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDN--VNILTSTDA 625 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~~~~~~ 625 (945)
++.++..+.....|++|++.+ ++.............+-++|+|++++|+++.. +|.|..|.++. |++...-..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 444554444567799998873 22221111122225677999999999999864 57777777664 554332211
Q ss_pred CCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCcccccc--ccCCcc-----ccccCcceeeeecccccceeccCC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRA--VENPPF-----EALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~~~~~--~~~~~~-----~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
.....+-+.++++++|++++++.. .|.|.++.++....+... ...|.. ......+....+.|+++++++..-
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 111124488999999999998876 588999998653122111 111111 111112556677777777653211
Q ss_pred CCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCC
Q 002264 698 PANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 777 (945)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 777 (945)
....|.+|++.+.......... ++ .......++|+|+++
T Consensus 165 ------------------------------------G~Dri~~y~~~dg~L~~~~~~~-v~----~G~GPRHi~FHpn~k 203 (346)
T COG2706 165 ------------------------------------GTDRIFLYDLDDGKLTPADPAE-VK----PGAGPRHIVFHPNGK 203 (346)
T ss_pred ------------------------------------CCceEEEEEcccCccccccccc-cC----CCCCcceEEEcCCCc
Confidence 1245667776643322221111 11 345678899999999
Q ss_pred eEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeE
Q 002264 778 GLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKI 854 (945)
Q Consensus 778 ~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i 854 (945)
+.....+ +++|.+|.+... .+++.. ++.-..+...+.+ .....++.+++||++|.++. .+.|
T Consensus 204 ~aY~v~EL~stV~v~~y~~~----~g~~~~--------lQ~i~tlP~dF~g---~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPA----VGKFEE--------LQTIDTLPEDFTG---TNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred EEEEEeccCCEEEEEEEcCC----CceEEE--------eeeeccCccccCC---CCceeEEEECCCCCEEEEecCCCCeE
Confidence 8887777 899999987543 111111 1111111112332 55677899999999999997 4678
Q ss_pred EEEeccC--ceE--EEEecCCCCCeeEEEeecCCCceEEEeecC-ceEEEEecc--cceEEEEec-CCCcceeEEEec
Q 002264 855 SLFNMMT--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTED-STIHIYNVR--VDEVKSKLK-GHQKRITGLAFS 924 (945)
Q Consensus 855 ~iwd~~~--~~~--~~~~~~h~~~i~~l~~s~~~~~~lasg~~d-g~v~vwd~~--~~~~~~~l~-~h~~~V~~l~~s 924 (945)
.+|.+.. +++ +.....+........|++ ++++|+++..+ .+|.+|.++ +|++-.... .......||.|.
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 8887763 332 222223444478899999 78888777765 468888765 555433322 233344556553
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-10 Score=123.37 Aligned_cols=227 Identities=11% Similarity=0.047 Sum_probs=141.1
Q ss_pred ccCCCccEEEEEEcCCCCEEE---EEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-
Q 002264 402 FKDVPISVSRVAWSPDGNYVG---VAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK- 475 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~la---s~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~- 475 (945)
+......+.+-+|||||+.++ +...+| .|.+.++.+|+..+ +....+.....+|+|||+. ++++...+|
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence 333455677889999998532 343443 58888888876432 3334445567899999995 233333223
Q ss_pred ---cEEEEe-CC---CceEEEecCCCCCEEEEEeeecCCccEEEEEE-cCCeEEEEEcc--C-CCeeEEecCCCCeEEEE
Q 002264 476 ---LIKVWE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD--T-MGSRVDYDAPGHWCTTM 544 (945)
Q Consensus 476 ---~i~vwd-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~--~-~~~~~~~~~~~~~i~~~ 544 (945)
.+..|+ .. +.......+........+|+| ||+.|+..+ .+|...+|.+. . +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 344477 33 232222222223345667766 667666655 46766666543 2 22233344444566788
Q ss_pred EEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC---CCcEEEEECCCCeeEE
Q 002264 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILT 621 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 621 (945)
.|+|||+.|+..+.. ++...|++||+.+++....... . ..+....|+|+|+.|+..+. ...|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999887642 3456899999998876554333 2 24566889999998886543 4578999998887655
Q ss_pred EeecCCCCCCccEEEEcCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEG 641 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g 641 (945)
..... +.+...+|+|-.
T Consensus 410 Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred eecCC---CcccCceecCCC
Confidence 54332 246778888743
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-09 Score=109.58 Aligned_cols=230 Identities=8% Similarity=0.027 Sum_probs=163.1
Q ss_pred eCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE-EcC-CCCEEEEEECCCcE
Q 002264 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA-WSP-DGNYVGVAFTKHLI 430 (945)
Q Consensus 353 sp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~-~s~-~g~~las~~~dg~i 430 (945)
+.||++++.+. .|.|.+||..+.+... + ++..+.. ..........+..-+. |++ +|.+++..+. |..
T Consensus 275 nsDGkrIvFq~--~GdIylydP~td~lek---l---dI~lpl~--rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gka 343 (668)
T COG4946 275 NSDGKRIVFQN--AGDIYLYDPETDSLEK---L---DIGLPLD--RKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKA 343 (668)
T ss_pred CCCCcEEEEec--CCcEEEeCCCcCccee---e---ecCCccc--cccccccccCHHHhhhhhccCCCcEEEEEec-CcE
Confidence 55788876654 5889999988765432 1 1110000 0000000111222222 444 7899998876 667
Q ss_pred EEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-cEEEEeCCCceEEEecCCCCCEEEEEeeecCCcc
Q 002264 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQ 509 (945)
Q Consensus 431 ~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 509 (945)
.+.+...+-.++ -+|.+.|.-..+..+++ -++.|..|| .+-++|..+..+..+...-+.|.++..++ +|+
T Consensus 344 Fi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~--dGK 414 (668)
T COG4946 344 FIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP--DGK 414 (668)
T ss_pred EEECCCCCeeEE-----cCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC--CCc
Confidence 777765554332 26888899999998888 788999999 89999977777788888888999999866 678
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceE
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 589 (945)
+++.+.....+.+.|++++.....-....+-|+.+.|+|++++++.+-.++--...|+++|+..++......... .-.
T Consensus 415 ~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta--~Df 492 (668)
T COG4946 415 KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA--YDF 492 (668)
T ss_pred EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc--ccc
Confidence 899988888999999999988877777778899999999999999876533335679999999887665433221 223
Q ss_pred EEEEcCCCCEEEEEE
Q 002264 590 VVQFDTTQNHFLAVG 604 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~ 604 (945)
+-+|.|++++|+.-+
T Consensus 493 sPaFD~d~ryLYfLs 507 (668)
T COG4946 493 SPAFDPDGRYLYFLS 507 (668)
T ss_pred CcccCCCCcEEEEEe
Confidence 468999999988765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=113.23 Aligned_cols=250 Identities=14% Similarity=0.187 Sum_probs=169.5
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--ccccceeecccc------------ccEEEEEEecCCCeeEEEE
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~~~~~l~s 470 (945)
...-|.+|.|..+|.+||+|..+|.|.++.-.... .......++.|. ..|..+.|.++++.-.++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999643221 111222333443 4688999999887667788
Q ss_pred EeCCCcEEEEe--CCCceE-------------------EEe----------------cCCCCCEEEEEeeecCCccEEEE
Q 002264 471 CGDDKLIKVWE--LSGRKL-------------------FNF----------------EGHEAPVYSICPHHKENIQFIFS 513 (945)
Q Consensus 471 ~s~d~~i~vwd--~~~~~~-------------------~~~----------------~~~~~~v~~~~~~~~~~~~~l~s 513 (945)
.+.|++|++|. ..+... -.+ .+|.--|+++.++. |+..+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns--D~Et~lS 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS--DKETFLS 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC--ccceEee
Confidence 88899999998 222111 000 24666788888754 5566655
Q ss_pred EEcCCeEEEEEccCCCeeEEec---CC-----CCeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeCCCCcee----eEe
Q 002264 514 TAIDGKIKAWLYDTMGSRVDYD---AP-----GHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIK----RTY 580 (945)
Q Consensus 514 ~~~dg~i~iwd~~~~~~~~~~~---~~-----~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~~~~~~~----~~~ 580 (945)
..|-.|.+|+++....-+.+. .+ ..-|++..|+|..- .++..++ .|.|++-|++...+. +.+
T Consensus 182 -ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS----KGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 182 -ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS----KGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred -ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC----CCcEEEeechhhhhhcchhhhh
Confidence 468899999987655544322 11 12578888999654 3444443 899999999853221 111
Q ss_pred ccccC-----------cceEEEEEcCCCCEEEEEECCCcEEEEEC-CCCeeEEEeecCCC----------CCCc---cEE
Q 002264 581 AGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DNVNILTSTDAEGG----------LPNL---PRL 635 (945)
Q Consensus 581 ~~~~~-----------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~----------~~~v---~~v 635 (945)
....+ ..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|.. ...| ..+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 11111 13667899999999988764 47999999 45666766665531 1122 458
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+|+.++.++++|+....++++++..|.
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCCc
Confidence 899999999999999999999977663
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-10 Score=126.12 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=138.4
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECC---CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--c
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~ 476 (945)
+..+...+.+.+|||||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566678999999999999987654 479999998875432 3345566778999999985 334555554 5
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.+||..+.....+..+........|++ +|+.|+..+. ++ .|.++|+.+++. ..+.........+.|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888844444555655555555667766 6677766554 33 577777765543 3344445566788999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC---cEEEEECCCCeeEEEee
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 624 (945)
+.+..+. +...|.+||+.++..... .... ......|+|+++.|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERVL-TDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEEc-cCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 8887521 234799999988654332 2211 233468999999998877543 35555543 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.5e-10 Score=112.83 Aligned_cols=349 Identities=13% Similarity=0.095 Sum_probs=212.7
Q ss_pred EEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEE
Q 002264 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 601 (945)
+|...+......+....-++..+++||.|.+|++.. ...|.+|+-..+..+..+.. ..+..+.|+|.+++|.
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~kYL~ 87 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRH---PDVKYLDFSPNEKYLV 87 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeec---CCceecccCcccceee
Confidence 454444333334444555788999999999999876 45689999887765555543 2578899999999999
Q ss_pred EEEC---------------CCcEEEEECCCCeeEEEeecCCCCCCcc-EEEEcCCCCEEEEEECCCcEEEEECCCCcccc
Q 002264 602 AVGE---------------DSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (945)
Q Consensus 602 ~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~ 665 (945)
+-+. ++.+.+||..+|..+..+.........+ -+.|+-+.+++|-.. ...+.|+++ ++.-.
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~- 164 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIE- 164 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccc-
Confidence 8653 3359999999999999987765422244 688898888877553 347999997 33111
Q ss_pred ccccCCcccccc-CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 666 RAVENPPFEALR-TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 666 ~~~~~~~~~~~~-~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
.++....+ ..+....++|.|..-. +.+..+. .....+.+++|.+.
T Consensus 165 ----~~p~~~lr~~gi~dFsisP~~n~~~---------la~~tPE---------------------k~~kpa~~~i~sIp 210 (561)
T COG5354 165 ----EHPFKNLRPVGILDFSISPEGNHDE---------LAYWTPE---------------------KLNKPAMVRILSIP 210 (561)
T ss_pred ----cCchhhccccceeeEEecCCCCCce---------EEEEccc---------------------cCCCCcEEEEEEcc
Confidence 11222122 3456667777653210 0000000 12334566777765
Q ss_pred eeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccc
Q 002264 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (945)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (945)
............ ..=..+.|.+.|.+++.-..-.+ .......+.....+++..... +...
T Consensus 211 ~~s~l~tk~lfk--------~~~~qLkW~~~g~~ll~l~~t~~-----------ksnKsyfgesnLyl~~~~e~~-i~V~ 270 (561)
T COG5354 211 KNSVLVTKNLFK--------VSGVQLKWQVLGKYLLVLVMTHT-----------KSNKSYFGESNLYLLRITERS-IPVE 270 (561)
T ss_pred CCCeeeeeeeEe--------ecccEEEEecCCceEEEEEEEee-----------ecccceeccceEEEEeecccc-ccee
Confidence 322111111111 11245778888887765332100 011111111222233332111 1110
Q ss_pred ccCCCcCCceeEEeecCCCceEEecC---CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecC---ceEE
Q 002264 825 VAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---STIH 898 (945)
Q Consensus 825 l~~~~~~~~i~~l~~s~dg~~la~~s---d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~d---g~v~ 898 (945)
. . -.++|..++|.|+++.+++.+ .-++.++|++.. .... .....=..+.||| .+++++.++-| |.|-
T Consensus 271 ~-~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~ 343 (561)
T COG5354 271 K-D--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HERYILFAGFDNLQGNIE 343 (561)
T ss_pred c-c--ccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-cccEEEEecCCccccceE
Confidence 1 1 468899999999998887765 467999998854 4333 3455667889999 88888886655 6899
Q ss_pred EEecccceE-EEEecCCCcceeEEEecCCcceeeeec------CCceEEEEec
Q 002264 899 IYNVRVDEV-KSKLKGHQKRITGLAFSTSLNILVSSG------ADAQVTLCVE 944 (945)
Q Consensus 899 vwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~~------~Dg~i~vWdl 944 (945)
+||....-. +..+.+-. ..-+.|+|||.++.+.. .|..+.||+.
T Consensus 344 i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 344 IFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 999876543 33666433 44568999999888754 3778999985
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-10 Score=127.20 Aligned_cols=261 Identities=15% Similarity=0.115 Sum_probs=150.4
Q ss_pred hHHHhhhcCCCCCC--cceeecCCC--C----ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcC--cEEE
Q 002264 302 HEQLMKRLRPAPSA--EEVTYSSSR--H----QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITL 371 (945)
Q Consensus 302 ~~~~~~~~~~~~~~--~~v~~~~~~--~----~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg--~i~i 371 (945)
.+.++++++..++. ..+.|.... . .+|-.+.........+.+...+.+.+|||||++++.+...++ .|.+
T Consensus 167 ~d~i~~~ltG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~ 246 (448)
T PRK04792 167 SDIVYEKLTGERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFV 246 (448)
T ss_pred HHHHHHHhcCCCccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEE
Confidence 34556666665422 224443322 1 133233222333445567788999999999997555544343 5888
Q ss_pred EEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE-EECCCc--EEEEEccCCcccccceeec
Q 002264 372 WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQID 448 (945)
Q Consensus 372 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las-~~~dg~--i~vwd~~~~~~~~~~~~~~ 448 (945)
||+.+++... +....+.....+|||||+.|+. .+.+|. |.+||+.+++.. .+.
T Consensus 247 ~dl~tg~~~~--------------------lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt 302 (448)
T PRK04792 247 QDIYTQVREK--------------------VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RIT 302 (448)
T ss_pred EECCCCCeEE--------------------ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECc
Confidence 8988776421 1111223346899999998875 455664 777888876532 344
Q ss_pred cccccEEEEEEecCCCeeEEEEEeCCCc--EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCe--EEE
Q 002264 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKL--IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKA 522 (945)
Q Consensus 449 ~h~~~v~~l~~s~~~~~~~l~s~s~d~~--i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~i 522 (945)
.+.......+|+|||+. +++++..++. |.++| .+++ ...+..........+|+| ||++|+..+. ++. |.+
T Consensus 303 ~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~ 378 (448)
T PRK04792 303 RHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK-VSRLTFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIAR 378 (448)
T ss_pred cCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC-EEEEecCCCCCcCeeECC--CCCEEEEEEecCCceEEEE
Confidence 45556778999999995 3334444444 55566 4444 333332222233456766 5566666554 443 455
Q ss_pred EEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
+|+.++.... +... .......|+|||+.|+..+. .++...+++++. ++...+.+..... .+...+|+|
T Consensus 379 ~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 379 QDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe-cCCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 6766655432 2221 12234579999999987764 234456888887 4555555554433 455566765
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-10 Score=127.47 Aligned_cols=236 Identities=12% Similarity=0.057 Sum_probs=143.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCc--CcEEEEEcCCCCcccccccccccccccCcccccccccC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (945)
+|-.+.........+.+...+...+|||||++++++...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4433433344455667888999999999999755554333 368899998876432 122
Q ss_pred CCccEEEEEEcCCCCEEEE-EECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEEE
Q 002264 405 VPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las-~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~v 479 (945)
..+.+...+|||||+.|+. ...+| .|.+||+++++.. .+..+........|+|||+. ++++...++ .|.+
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 2334557899999998874 44454 5888899887533 24445556777899999995 233333344 5667
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC-C--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+| .+++ ...+...........|+| +|+.++..+.+ + .|.+||+.+++....... .......|+|||+.++.
T Consensus 316 ~d~~~g~-~~~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGR-AERVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCC-EEEeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEE
Confidence 77 4454 333322222233456666 55677666543 3 477888887654332221 22235689999999988
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
.+. ..+...+++++... ...+.+..... .+...+|+|
T Consensus 391 ~~~-~~g~~~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATR-QQGRGVLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEe-cCCceEEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 765 22355688888753 33334433222 345556665
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-10 Score=126.96 Aligned_cols=223 Identities=17% Similarity=0.141 Sum_probs=141.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCc--CcEEEEEcCCCCcccccccccccccccCcccccccccC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (945)
+|-.+.........+.+...+...+|||||++++++...+ ..|++||+.+++... +..
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~ 231 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VAS 231 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eec
Confidence 4443333334455566777899999999999744443222 479999998875431 223
Q ss_pred CCccEEEEEEcCCCCEEEEE-ECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CCC--cEE
Q 002264 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d~--~i~ 478 (945)
+.+.+.+++|+|||+.|+.. +.++ .|++|++.++... .+..+........|+|||+ .++.++ .++ .|.
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQIY 305 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCceEE
Confidence 44566779999999987754 4444 5888898876432 2334555556789999999 444433 334 577
Q ss_pred EEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 479 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
++|..+.....+..+...+....|+| +|++++.++.++ .|.+||+.++.... +... .......|+|||+.|+.
T Consensus 306 ~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 306 MMDADGGEVRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILY 381 (417)
T ss_pred EEECCCCCEEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEE
Confidence 77744444455554555667777766 567888877765 78888887754332 2222 22345689999999988
Q ss_pred EeecCCCCceEEEEeCCCCceeeEec
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
.... ++...+++.+.. +.....+.
T Consensus 382 ~~~~-~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 382 ATTR-GGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEeC-CCcEEEEEEECC-CceeeECC
Confidence 7752 233456666643 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-07 Score=111.58 Aligned_cols=446 Identities=11% Similarity=0.119 Sum_probs=245.8
Q ss_pred ccEEEEEEcCCCCEEEEEEC--CC--cEEEEEccCCcccccceeec-----cccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 407 ISVSRVAWSPDGNYVGVAFT--KH--LIQLYSYAGSNDLRQHSQID-----AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~--dg--~i~vwd~~~~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
..+...+|.+..+.+..+.. .. .|.+...........+..+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 45677788776554433332 22 23444333322122222222 3456899999999998 56777778999
Q ss_pred EEE----eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-------------CC----------Ce
Q 002264 478 KVW----ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------------TM----------GS 530 (945)
Q Consensus 478 ~vw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------------~~----------~~ 530 (945)
.+. +.....+.....-...|.+++|+| |+..|+..+.++++.+-+-+ .+ +.
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 988 534444444444577899999988 55788888888887764311 00 00
Q ss_pred eEEecC------------------------CCCeEEEEEEcCCCCEEEEEeecCC-C-CceEEEEeCCCCceeeEecccc
Q 002264 531 RVDYDA------------------------PGHWCTTMLYSADGSRLFSCGTSKD-G-DSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 531 ~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~~~d-~-~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
...+.+ ....-..++|-.||.++++.+.+.. + ...+++|+-. |.+..+-....
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~ 256 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD 256 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC
Confidence 000000 1224467899999999998876332 2 4789999965 66555444222
Q ss_pred CcceEEEEEcCCCCEEEEEEC---CCcEEEEECCCCeeEEEeecC--CCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 585 KKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAE--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+ --..++|-|.|+++++... ...|.+|..+. -.-..+... .....|..+.|++|+..||+...| .|.+|...
T Consensus 257 g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~ 333 (928)
T PF04762_consen 257 G-LEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRS 333 (928)
T ss_pred C-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEee
Confidence 2 4456899999999988763 45677787543 333333332 233478999999999999998866 49999987
Q ss_pred CCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCc
Q 002264 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPK 739 (945)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 739 (945)
+-.=-++..-.... ...+..+.|+|.... .+.....+|.+.
T Consensus 334 NYHWYLKqei~~~~---~~~~~~~~Wdpe~p~------------------------------------~L~v~t~~g~~~ 374 (928)
T PF04762_consen 334 NYHWYLKQEIRFSS---SESVNFVKWDPEKPL------------------------------------RLHVLTSNGQYE 374 (928)
T ss_pred CCEEEEEEEEEccC---CCCCCceEECCCCCC------------------------------------EEEEEecCCcEE
Confidence 65211111100000 011222555554221 112222223333
Q ss_pred ccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcc
Q 002264 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 819 (945)
Q Consensus 740 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (945)
.++..-.... +-..+|+..-+++.-+...+.+-.+...-..|
T Consensus 375 ~~~~~~~v~~-------------------s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP------------------- 416 (928)
T PF04762_consen 375 IYDFAWDVSR-------------------SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP------------------- 416 (928)
T ss_pred EEEEEEEEEe-------------------cCCCCccCceEEEEEeCCeEEEecccccCCCc-------------------
Confidence 3332210000 00011112222333333344443322211111
Q ss_pred cccc-cccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEE--------EEec----------CCCCCeeEEE
Q 002264 820 LMAN-DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM--------TTFM----------SPPPASTFLA 879 (945)
Q Consensus 820 ~~~~-~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~--------~~~~----------~h~~~i~~l~ 879 (945)
++.. .+. -...|.+++|++++..+|+-. ||+|.+|........ ..+. .....+..++
T Consensus 417 PMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (928)
T PF04762_consen 417 PMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA 493 (928)
T ss_pred hHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE
Confidence 0100 011 356899999999987666665 898888875432111 1111 1233478899
Q ss_pred eecCCCceEEEeecC---ceEEEEecccc---eEEEEecCCCcceeEEEecCCcceeeeecCCceEEE
Q 002264 880 FHPQDNNIIAIGTED---STIHIYNVRVD---EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941 (945)
Q Consensus 880 ~s~~~~~~lasg~~d---g~v~vwd~~~~---~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~v 941 (945)
|.. +..+++....+ ..+.++++... ..+.....-.+.+..+...++...++.-..||.+..
T Consensus 494 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 494 WLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred EeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 988 66666666554 57888887433 233333333455666666665554555566777654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.28 E-value=7e-09 Score=107.87 Aligned_cols=271 Identities=12% Similarity=0.113 Sum_probs=167.7
Q ss_pred CCCeEEEEEeC----cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC----
Q 002264 355 SHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---- 426 (945)
Q Consensus 355 ~g~~llasgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~---- 426 (945)
++.+++++-.. .++|.+.|..+++.+.. +-.|.... .+ +||||+.|.++..
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~------------------i~~G~~P~--~~-~spDg~~lyva~~~~~R 69 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGM------------------TDGGFLPN--PV-VASDGSFFAHASTVYSR 69 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEE------------------EEccCCCc--ee-ECCCCCEEEEEeccccc
Confidence 34444444333 28999999999876632 11122111 24 9999998887755
Q ss_pred ------CCcEEEEEccCCcccccceeecc----ccccEEEEEEecCCCeeEEEEE--eCCCcEEEEe-CCCceEEEecCC
Q 002264 427 ------KHLIQLYSYAGSNDLRQHSQIDA----HVGAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 427 ------dg~i~vwd~~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~~~~l~s~--s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
+..|.+||..+++.+..+..-.. .......++++|||+. ++.. +.+..|-+.| .+++.+..+.-.
T Consensus 70 ~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 70 IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 67899999999887764321101 1223457899999994 4433 4478999999 888888777642
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-----ecCCCCeE-EEEEEcC-CCCEEEEEeecCCCCceE
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-----YDAPGHWC-TTMLYSA-DGSRLFSCGTSKDGDSFL 566 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i-~~~~~s~-~~~~l~~~~~~~d~~~~i 566 (945)
.. ..-. +.++..+ .+-+.||......++....... +......+ ..-.|.+ +|+++.+.. .|.|
T Consensus 148 ~~-~~vy---~t~e~~~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V 217 (352)
T TIGR02658 148 DC-YHIF---PTANDTF-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKI 217 (352)
T ss_pred CC-cEEE---EecCCcc-EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeE
Confidence 21 1111 1212222 2344566655544433222111 11100000 0113455 888777664 6899
Q ss_pred EEEeCCCC-----ceeeEeccc------cCcceEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCeeEEEeec
Q 002264 567 VEWNESEG-----TIKRTYAGF------RKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 567 ~iwd~~~~-----~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~ 625 (945)
.+.|+... .....+... .......++++++++.+++.. ..+.|.++|..+++.+..+..
T Consensus 218 ~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v 297 (352)
T TIGR02658 218 FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL 297 (352)
T ss_pred EEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC
Confidence 99996443 223222211 111234499999999988843 225799999999999999876
Q ss_pred CCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCC
Q 002264 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIG 661 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~ 661 (945)
.. .+..++++|||+ .|++.. .++.|.++|..++
T Consensus 298 G~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 298 GH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 43 679999999999 777666 5788999999888
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-08 Score=100.07 Aligned_cols=285 Identities=8% Similarity=-0.013 Sum_probs=173.3
Q ss_pred CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee------cCCCCceEEEEeCCCCceeeEeccccC------
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEGTIKRTYAGFRK------ 585 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------~~d~~~~i~iwd~~~~~~~~~~~~~~~------ 585 (945)
++|.+.|..+.+....+.....+- .+ ++||++.++++.. .+..+..|.+||..+.+.+..+....+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999887777666543332 34 9999999988864 112367899999999999988875322
Q ss_pred cceEEEEEcCCCCEEEEEE-C-CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002264 586 KSNGVVQFDTTQNHFLAVG-E-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~ 663 (945)
.....++++|+|+++++.. . ++.|.+.|+.+++.+..+...+. ..-...+++..+ + -+.||......+.+...
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~-~-~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YHIFPTANDTFF-M-HCRDGSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cEEEEecCCccE-E-EeecCceEEEEecCCCc
Confidence 1234689999999999877 4 78999999999999998876331 111222222222 1 12344333333322111
Q ss_pred ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccc
Q 002264 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (945)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (945)
.. . .+..+++.
T Consensus 180 ~~--------------~-------------------------------------------------------~~~~vf~~ 190 (352)
T TIGR02658 180 PK--------------I-------------------------------------------------------KPTEVFHP 190 (352)
T ss_pred eE--------------E-------------------------------------------------------eeeeeecC
Confidence 00 0 00011110
Q ss_pred ceeecCCcceeeecCCCCCCccceEEEEEec-CCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccc
Q 002264 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTN-SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (945)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (945)
.. . .+ ...+ .|++ +|+++.+... |+|.+.|+........ ..|...+.....
T Consensus 191 ~~------~-~v-------~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~---------~~~~~~~~~~~~ 242 (352)
T TIGR02658 191 ED------E-YL-------INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL---------PAIEAFTEAEKA 242 (352)
T ss_pred Cc------c-cc-------ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceec---------ceeeeccccccc
Confidence 00 0 00 0011 3345 6665555555 8888877543221110 111111100000
Q ss_pred ccccCCCcCCceeEEeecCCCceEEecC-----------CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCc-eEEE
Q 002264 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAI 890 (945)
Q Consensus 823 ~~l~~~~~~~~i~~l~~s~dg~~la~~s-----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~-~las 890 (945)
... ..+...-+++++|++.+.++. .+.|.++|..+++.+..+.. ...+..++++| |++ +|++
T Consensus 243 ~~w----rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~-Dgkp~lyv 316 (352)
T TIGR02658 243 DGW----RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQ-DAKPLLYA 316 (352)
T ss_pred ccc----CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECC-CCCeEEEE
Confidence 000 123344599999998887732 24699999999999998873 45789999999 777 7765
Q ss_pred ee-cCceEEEEecccceEEEEec
Q 002264 891 GT-EDSTIHIYNVRVDEVKSKLK 912 (945)
Q Consensus 891 g~-~dg~v~vwd~~~~~~~~~l~ 912 (945)
.. .++.|.|+|..+++.+.++.
T Consensus 317 tn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 317 LSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred eCCCCCcEEEEECcCCeEEeeec
Confidence 65 67889999999999998873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-10 Score=107.70 Aligned_cols=202 Identities=15% Similarity=0.201 Sum_probs=134.1
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 522 (945)
.+.||.+.|++...-|-.. -+++.+.|.++++|- ..++.-..+. ....+++++.+.. +...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence 5778999999988888777 689999999999998 4444333332 2355677777655 5578999999999988
Q ss_pred EEcc----CCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 523 WLYD----TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 523 wd~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
+.+. ..........|...+..+.|+-....+++++. |..+.---.+.+..+..+.-... .....+.- .
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~--~ 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA--L 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--E
Confidence 8543 33344455667788999999999999999875 44443222233332221111000 00111111 1
Q ss_pred EEEEEECCCcEEEEECCC--CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 599 HFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.+.|...|.|..-.+.. -.++..+.+ +...+.+++|.|....+.+|..|..+.+||+...
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 445555666666655443 344555554 4569999999999999999999999999999654
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-09 Score=106.06 Aligned_cols=247 Identities=15% Similarity=0.242 Sum_probs=172.6
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcC-CCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
+.-+|.+.|++...-|.... +.+.+.|.+++||--. .++.-. .+......++++++++++
T Consensus 19 ~~eG~~d~vn~~~l~~~e~g-v~~~s~drtvrv~lkrds~q~wp------------------sI~~~mP~~~~~~~y~~e 79 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEG-VISVSEDRTVRVWLKRDSGQYWP------------------SIYHYMPSPCSAMEYVSE 79 (404)
T ss_pred hhcCchhhhhhheeccCCCC-eEEccccceeeeEEeccccccCc------------------hhhhhCCCCceEeeeecc
Confidence 33457778888888887775 8899999999999643 333221 123335678999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCc-ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
.+.|++|-.+|++.-+.+...- .....+.+..|...|..+.|+.... .+++.+.|+.+.-.- ..|..+..+.- ..
T Consensus 80 ~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e--~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~ 156 (404)
T KOG1409|consen 80 SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE--WVLSTGKDKQFAWHCTESGNRLGGYNF-ET 156 (404)
T ss_pred ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce--eEEEeccccceEEEeeccCCcccceEe-ec
Confidence 9999999999999888764321 1111224568999999999998888 889999998774333 55554422210 00
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEc--cCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
.-+++.+ +-.+.+.|...|.|..-.+ ..-..+..+.++...+.+++|.+..+.+.++.. +..+.+||+..
T Consensus 157 ~~t~~~~----d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~----d~~vi~wdigg 228 (404)
T KOG1409|consen 157 PASALQF----DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS----DHSVIMWDIGG 228 (404)
T ss_pred cCCCCce----eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc----cCceEEEeccC
Confidence 1111111 1013445555565555433 344556678888999999999999999999886 88999999976
Q ss_pred Cce-eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 574 GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 574 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
++- .....+|.+ .+..++..+--..+++++.||.|.+|+++.
T Consensus 229 ~~g~~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 229 RKGTAYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred Ccceeeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 553 345566665 677777777778999999999999999864
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-08 Score=112.11 Aligned_cols=307 Identities=10% Similarity=0.022 Sum_probs=181.5
Q ss_pred ccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc
Q 002264 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587 (945)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~ 587 (945)
+..+++++.+|.+..+|..+++..............+.. ++..+++++. ++.++.+|..+|+.+........ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~-~ 137 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSSE-V 137 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCce-e
Confidence 357888889999999999999888776665542223332 4566666654 88999999999998766543221 1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC---ccEEEEcCCCCEEEEEECCCcEEEEECCCCccc
Q 002264 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (945)
Q Consensus 588 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~ 664 (945)
.....+ .+..++.++.+|.|+.||..+|+.+........... ..+... .+..++.+..+|.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 111122 245788888899999999999998877654321100 011111 1246777888899999998887321
Q ss_pred cccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
.. .... .+.+. . ..-++.+.
T Consensus 214 W~-~~~~--------------~~~g~-------------------------------------------~-~~~~~~~~- 233 (377)
T TIGR03300 214 WE-QRVA--------------LPKGR-------------------------------------------T-ELERLVDV- 233 (377)
T ss_pred ee-eccc--------------cCCCC-------------------------------------------C-chhhhhcc-
Confidence 11 0000 00000 0 00000000
Q ss_pred eeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccc
Q 002264 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (945)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (945)
.... .+ .+..+++++.+|.+..||.... +. +|....+
T Consensus 234 ------------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG------~~-------~W~~~~~------ 270 (377)
T TIGR03300 234 ------------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSG------RV-------LWKRDAS------ 270 (377)
T ss_pred ------------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCC------cE-------EEeeccC------
Confidence 0000 11 1345666777788888765321 11 2322100
Q ss_pred ccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCC-CeeEEEeecCCCceEEEeecCceEEEEec
Q 002264 825 VAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (945)
Q Consensus 825 l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~-~i~~l~~s~~~~~~lasg~~dg~v~vwd~ 902 (945)
.....++ ++..+.+++ +|.+..+|..+++.+........ ...+.... +..|++++.+|.|+++|.
T Consensus 271 --------~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 271 --------SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred --------CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCEEEEEEC
Confidence 0111222 344455555 89999999999988776632222 22333332 347888999999999999
Q ss_pred ccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEE
Q 002264 903 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942 (945)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vW 942 (945)
.+|+.+.++..+...+..--...++ .|+.++.||.|+.+
T Consensus 338 ~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 338 EDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999999988766544333223343 47788999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=114.40 Aligned_cols=193 Identities=13% Similarity=0.174 Sum_probs=151.3
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEe------c------------CCCeeEEEEEeCCCc
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKL 476 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~------------~~~~~~l~s~s~d~~ 476 (945)
.|-+.++|....||.+++|+...++....+.....-.+..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3457899999999999999999876544332222334455555553 1 122237888999999
Q ss_pred EEEEe-CCCceEEEec--CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
|.+|+ ..|+....+. .|.+.|.++.++. +-..|.+++.|+.+..|+................+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 7787777765 6899999998765 44689999999999999999888888888888889999999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC-----CCEEEEEE-CCCcEEEEECCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAVG-EDSQIKFWDMDN 616 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~ 616 (945)
++++ +.|.+||+.+++.+.+|.+|.. .++++.|... |.+++++. .+..+.+|-+..
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9885 5899999999999999999987 8999988776 66776644 556677776554
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-09 Score=111.09 Aligned_cols=192 Identities=17% Similarity=0.274 Sum_probs=147.0
Q ss_pred CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE-------------------
Q 002264 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------------------- 414 (945)
Q Consensus 354 p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~------------------- 414 (945)
|-+. ++|..+.||.++||+..+++......- ...-++..++..|
T Consensus 3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred chhh-eEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 4455 488888999999999988876432100 0011233333333
Q ss_pred -cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC
Q 002264 415 -SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (945)
Q Consensus 415 -s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~ 492 (945)
+.|-..++-|...|.|.+|++..|+.-..+ .-..|.+.|.++.++.+-. +|.|++.|+.+..|+ ..++.++.+..
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeecc
Confidence 223457788888999999999988754432 3357999999999998888 899999999999999 88888889998
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC-----CCEEEEEeecCCCCceEE
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~~~d~~~~i~ 567 (945)
....+.+++++| ||..+++++ +.|++||+++.+.+..+.+|.++|+++.|..+ |.++++... .+.-+.
T Consensus 143 ~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~ 215 (541)
T KOG4547|consen 143 QKPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGIT 215 (541)
T ss_pred CCCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---ccccee
Confidence 889999999877 567888776 78999999999999999999999999999877 778776643 244566
Q ss_pred EEeCC
Q 002264 568 EWNES 572 (945)
Q Consensus 568 iwd~~ 572 (945)
+|-..
T Consensus 216 ~w~v~ 220 (541)
T KOG4547|consen 216 VWVVE 220 (541)
T ss_pred EEEEE
Confidence 66544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=117.89 Aligned_cols=245 Identities=13% Similarity=0.196 Sum_probs=169.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC-cccc---cceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~-~~~~---~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
..+.||...|..++--.+.+-+++++.|.+|++|.++.. ..+. ...++..|+.+|.++-|..+.+ +++++ ||
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~ 804 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DG 804 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cC
Confidence 357899999999988888899999999999999998742 2222 4457889999999999999887 56655 89
Q ss_pred cEEEEe-CCCceEEEecC--CCCCEEEEEeeecCCccEEEEE-EcCCeEEEEEccCCCeeEEec-----CCCCeEEEEEE
Q 002264 476 LIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDYD-----APGHWCTTMLY 546 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~ 546 (945)
.|.+|| .-|+.+..... ..+.+..+...++-+..+++.| +...+|+++|.+..+-...+. ++...+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999 88877653321 1222222222244344556555 778999999998876555443 34457889999
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEE-EECCCCeeEEEeec
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTSTDA 625 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~ 625 (945)
.+.|+.++++-. +|.|.+.|.++|+.+.....-.- ..-.++ .|....++....|..+.+ |...+|........
T Consensus 885 a~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 885 ADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred ccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 999999998875 89999999999998876654322 111122 345567777778888988 98777765544433
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
+.. +.. -...-|.-++++.....+.+|.-
T Consensus 959 ppe--pah--flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPE--PAH--FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCc--chh--hhhccCceeEEeccCcEEEEEec
Confidence 221 111 11123566777776677777754
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=133.06 Aligned_cols=203 Identities=19% Similarity=0.292 Sum_probs=158.7
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....++-..|.++.=+|...+ .+||+.||.|++|.+..++.+.. |+ -.|. ..|+.+.|+.+
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQ 2262 (2439)
T ss_pred eEeecccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhccc
Confidence 344456789999999999985 88999999999999988876642 11 1233 78999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe---CCCcEEEEe--CCCceEEEecC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEG 492 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s---~d~~i~vwd--~~~~~~~~~~~ 492 (945)
|+.+..+..||.+.+|.+.. +.....+.|.....+++|-. . .+++++ .++.+.+|| ..+..-..-..
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred CCceeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeee
Confidence 99999999999999999872 33336778999999999986 3 566654 467899999 44443333378
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
|.+.++++++.|.. +.|++||.+|.|++||++..+.+..+.. +. ...++++++. .|.++||++.
T Consensus 2335 H~~gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLS 2398 (2439)
T ss_pred cCCCceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcc
Confidence 99999999998854 8999999999999999988776665543 33 4556777765 8999999999
Q ss_pred CCceeeEeccc
Q 002264 573 EGTIKRTYAGF 583 (945)
Q Consensus 573 ~~~~~~~~~~~ 583 (945)
....+.++...
T Consensus 2399 ~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2399 EFGLLHTFPSE 2409 (2439)
T ss_pred ccchhhcCchh
Confidence 88887777643
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-08 Score=107.00 Aligned_cols=182 Identities=12% Similarity=0.061 Sum_probs=116.8
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
.++.++.++.+..+| .+|+.+..+............ ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 677788899999999 899988766543322222222 346788889999999999999988877655443222222
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce-----EEEEEcCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN-----GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
. .+..++.+.. ++.++.||..+|+.+-.+..... .. ....+. +..++++..+|.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 2345555543 88999999999988776654322 11 111122 347788888999999999999877
Q ss_pred EEeecCCCC--CC---ccEEEEcC--CCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~--~~---v~~v~~sp--~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
......... .. +..+.-+| .+..+++++.+|.+..||..++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 654321100 00 01111111 3557777888899999998877
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-08 Score=98.05 Aligned_cols=250 Identities=16% Similarity=0.102 Sum_probs=158.4
Q ss_pred CCcEEEEEEeC---CCCeEEEEEeCcCcEEEEEcCCCCcccc-cccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 344 GSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 344 ~~~V~~v~fsp---~g~~llasgs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
...+..+.|.. +|...|+-+..+|.|.++.......... ..+.. ..-....-.++.|++.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccCc
Confidence 34666777763 4554567777789999997643322110 00000 000111345789999999
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C-CCceEEE-ecCCCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGHEAP 496 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~-~~~~~~~-~~~~~~~ 496 (945)
.++++..+|.+.+-+.... .++..+.++.|.-+++-..|+..... ++.+||.|+.+..|| . .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999986554432 33444468899999999999987765 899999999999999 3 5555544 5678999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC--EEEEEeecCCCCceEEEEeCCCC
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
|.+|.-+|. .+.++++|+.|-.|++||.+.......-..-.+.|..+.++|.-. .++++- -+-.++.+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CM-----h~G~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACM-----HNGAKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHH-----hcCceEEEeccc
Confidence 999987664 568999999999999999986555444444456799999998543 333332 222445554433
Q ss_pred ce-----eeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEE-EEECCC
Q 002264 575 TI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIK-FWDMDN 616 (945)
Q Consensus 575 ~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~ 616 (945)
.. ......|.. -...-.|......+++++ .|+.++ +|-.-+
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeecc
Confidence 21 222233332 222233333335577765 566644 664433
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-10 Score=130.84 Aligned_cols=202 Identities=13% Similarity=0.220 Sum_probs=164.6
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+..|-..|.++.=+|...+.++|+.||.|++|....+..+....+. +. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4446678889998999999999999999999999988877654443 33 8999999999999 788888899999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE---cCCeEEEEEccCCCee-EEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSR-VDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
...++....+.|........|.. ..+++++ .++.+.+||....... .....|.+.++++++.|..+.+++||
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 77888888889999888888764 3466654 5678999986543322 23367888999999999999999999
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
. +|.|++||++..+.+++++. ++ ...+|++|+..|.++||++.....+..+...
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 6 99999999999888877764 33 4678999999999999999988777766543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-08 Score=95.83 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=168.6
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC---CCC-EEEEEECCCcEEEEEccCCccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDL 441 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~---~g~-~las~~~dg~i~vwd~~~~~~~ 441 (945)
.|.+.+|++...+...... +.......+..+.|+. +|. .++-+..+|.|.++.....+..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~----------------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDT----------------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCccce----------------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 4678888887665542111 1112345677788864 555 5666778899999987654332
Q ss_pred ccceeeccccc---cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCce--EEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 442 RQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK--LFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 442 ~~~~~~~~h~~---~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
..+..+..-.- .--++.|++.+. -++++-.+|.+.+-+ ..... ++.++.|.-..+...|+... .+++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-CceEEecC
Confidence 21112221111 245778999888 678888899988666 44443 34789999999999997654 48999999
Q ss_pred cCCeEEEEEccCCC-eeEE-ecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEE
Q 002264 516 IDGKIKAWLYDTMG-SRVD-YDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVV 591 (945)
Q Consensus 516 ~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 591 (945)
.|+.+..||++..+ .+.. ...|...|.++.-+| .+.++++++. |..|++||.++ ++++..-.. .+.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v--~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV--GGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc--ccceEEE
Confidence 99999999999444 2222 345666788887776 5778888887 88999999984 566544332 3468888
Q ss_pred EEcCCCC-EEEEEECCCcEEEEECCCCeeE--EEeec-CCCCCCccEEEEcCCCCEEEEEE-CCCcEE-EEECCCC
Q 002264 592 QFDTTQN-HFLAVGEDSQIKFWDMDNVNIL--TSTDA-EGGLPNLPRLRFSKEGNLLAVTT-ADNGFK-ILANAIG 661 (945)
Q Consensus 592 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~-~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~-iw~~~~~ 661 (945)
..+|.-. .++.++.-+-.+|-+...+... ..+.. ..|.+-+..-.|.....++|+++ .|..++ +|-..++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888543 3333444444566665543322 11111 12212334444533345677765 366655 7765544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-10 Score=123.97 Aligned_cols=218 Identities=16% Similarity=0.236 Sum_probs=163.7
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-cEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIK 478 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-~i~ 478 (945)
+.+..|....+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|.++|+-+.=+.||.. .|.+++... -..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHH
Confidence 4477899999999999999999999999999999999998776 67899999999999999995 333333333 567
Q ss_pred EEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC----CCeEEEEEEcCCCCE
Q 002264 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSR 552 (945)
Q Consensus 479 vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~~~~~ 552 (945)
+|+ ..+...++|.+. .++.|+.. ...-+.|+......+||+.+.....++-.. ...-++..|+|+.+.
T Consensus 1171 LW~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HhccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 999 556666666542 45566543 233445555567889999998776653221 123367889999988
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
++- +| .+||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.+.....-..
T Consensus 1245 Iln-------dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq---- 1304 (1516)
T KOG1832|consen 1245 ILN-------DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ---- 1304 (1516)
T ss_pred Eee-------Cc--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----
Confidence 874 44 4699999988888876553 233569999999999887 999999998887765433
Q ss_pred cEEEEcCCCCEEEEE
Q 002264 633 PRLRFSKEGNLLAVT 647 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~ 647 (945)
..|.|+..|..++..
T Consensus 1305 c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eEEEeccCccchhhh
Confidence 678899888876643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-07 Score=111.94 Aligned_cols=245 Identities=14% Similarity=0.125 Sum_probs=160.6
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEEccCCcccccceeec-----------cccccEEEEEEecCCCeeEEEEEeCCCcE
Q 002264 410 SRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-----------AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (945)
Q Consensus 410 ~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~-----------~h~~~v~~l~~s~~~~~~~l~s~s~d~~i 477 (945)
..++++++ ++.+++-+.++.|++||..+. .+....... ++-.....+++.++++. ++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889875 566666677888999997643 222111100 01123578999998873 33444456789
Q ss_pred EEEeCCCceEEEecCC-----------------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC---
Q 002264 478 KVWELSGRKLFNFEGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--- 537 (945)
Q Consensus 478 ~vwd~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--- 537 (945)
+++|..+..+.++.+- -.....+++++. ++.++++.+.++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999554555555321 012356788764 44677788888999999987654321 1110
Q ss_pred ------------CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc------------c--------C
Q 002264 538 ------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------R--------K 585 (945)
Q Consensus 538 ------------~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~------------~--------~ 585 (945)
-.....++++|+++.|+++.. +++.|++||+.++.......+. . -
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 123467999999997776654 4789999999876532111000 0 0
Q ss_pred cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC-----------CCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
.....++++++|+.+++-+.++.|++||..++......... ........++++++|+++++-+.++.|+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 02356889999998888889999999999887765433211 0112457899999999888888899999
Q ss_pred EEECCCC
Q 002264 655 ILANAIG 661 (945)
Q Consensus 655 iw~~~~~ 661 (945)
+||+.++
T Consensus 884 vid~~~~ 890 (1057)
T PLN02919 884 YLDLNKG 890 (1057)
T ss_pred EEECCCC
Confidence 9999876
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-09 Score=112.58 Aligned_cols=223 Identities=15% Similarity=0.260 Sum_probs=154.7
Q ss_pred ccccccccCcccccccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCC
Q 002264 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK 464 (945)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 464 (945)
.+|++..+.......++.||+.+|+.+.|.|. ...+|+++.|-.|..||+.+.... +.....-...-..++|+-...
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQVKWNYKDP 171 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCceeeecccCc
Confidence 35555555555555678999999999999995 568999999999999999875432 223444455677899987666
Q ss_pred eeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeE
Q 002264 465 LLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWC 541 (945)
Q Consensus 465 ~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i 541 (945)
.+...+..+.|.+|| ..+.++..+++|...|+++.|..... ..+.+.+.||+|+.||.+.......... ...+|
T Consensus 172 --~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi 248 (1081)
T KOG0309|consen 172 --NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI 248 (1081)
T ss_pred --chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcc
Confidence 455566788899999 55678899999999999998865433 4688999999999999887655443322 33466
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCC---------C-CceeeEeccccCcceEEEEE--------cC--CCCEEE
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNES---------E-GTIKRTYAGFRKKSNGVVQF--------DT--TQNHFL 601 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~---------~-~~~~~~~~~~~~~~~~~~~~--------~~--~~~~l~ 601 (945)
..-.+.|-|.-.+.--. .|+..+.+++.+ + .+++.+|.||.+ .|-..-| .. ..-.|+
T Consensus 249 w~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLV 325 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLV 325 (1081)
T ss_pred eeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEE
Confidence 66667775554333221 123344444332 2 467889999987 3322222 11 224689
Q ss_pred EEECCCcEEEEECCC
Q 002264 602 AVGEDSQIKFWDMDN 616 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~ 616 (945)
+-+.|..+++|-+.+
T Consensus 326 TWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 326 TWSKDQTLRLWPIDS 340 (1081)
T ss_pred EeecCCceEeeeccH
Confidence 999999999998864
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=113.80 Aligned_cols=267 Identities=15% Similarity=0.189 Sum_probs=169.4
Q ss_pred cccCCCCCCCCCceecCCCChHHHhhhcCCCCCCcceeecCCCCc--cccCCCCCcc-eEEeec-CCCcEEEEEEeCCCC
Q 002264 282 VLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQ--TWSLDDLPRT-VAVSLH-QGSTVISMDFHPSHQ 357 (945)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-~~~~~~-h~~~V~~v~fsp~g~ 357 (945)
..-+...|.+++.+.-....-+..-.+..+++...-.+.+...+. +|++...... ....++ |+..|+.+.|.|...
T Consensus 48 ~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~p 127 (1081)
T KOG0309|consen 48 YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHP 127 (1081)
T ss_pred EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCC
Confidence 344445555555544333332333334444443333344444444 9998765543 444455 999999999999998
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
-+||+++.|..|..||+.+.... +.. ...-...-..++|+-....+.+.+....|.+||...
T Consensus 128 dVlatcsvdt~vh~wd~rSp~~p----~ys--------------~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 128 DVLATCSVDTYVHAWDMRSPHRP----FYS--------------TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred cceeeccccccceeeeccCCCcc----eee--------------eecccccCceeeecccCcchhhhccCCceEEEeccC
Confidence 89999999999999999875432 211 112234566789998444444445667799999998
Q ss_pred CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 438 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
|..... .+++|...|..++|..--.. .+.+++.|++|+.|| ... +.-........+|.--++.|-++|..+.-.-
T Consensus 190 gs~pl~--s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 190 GSTPLC--SLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred CCcceE--EecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 775443 67789999999999865433 688999999999999 332 2222333345567766777776665554433
Q ss_pred cCCeEEEEEcc----------CCCeeEEecCCCCeEEEEEEcCCC----------CEEEEEeecCCCCceEEEEeCCC
Q 002264 516 IDGKIKAWLYD----------TMGSRVDYDAPGHWCTTMLYSADG----------SRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 516 ~dg~i~iwd~~----------~~~~~~~~~~~~~~i~~~~~s~~~----------~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
.+..+.+++.+ ....+..+.+|...|....|-..+ -.|++-+. |..+++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk----D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK----DQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec----CCceEeeeccH
Confidence 33455444332 234566788887766555553321 24677664 88999998764
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=96.83 Aligned_cols=249 Identities=16% Similarity=0.216 Sum_probs=154.9
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--ccccceeecccc------------ccEEEEEEecCCCeeEEEE
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~~~~~l~s 470 (945)
....|+++.|...|.||++|...|.|.+|.-.... ..+.+..+++|. ..|..+.|..++..-.|+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999989999999765432 122222455554 3588899988766557777
Q ss_pred EeCCCcEEEEeCCCceEEEecC----------CCCCEEEEEeeecCCccEEE-EEE-cCCeEEEEEccCCCeeEEecCCC
Q 002264 471 CGDDKLIKVWELSGRKLFNFEG----------HEAPVYSICPHHKENIQFIF-STA-IDGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 471 ~s~d~~i~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~l~-s~~-~dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
.+.|++|++|..-.+.+..... ..+++++.. .++. -.+ .|..|... .+...-..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~-------~l~lprls~hd~iiaa~-----p~rvyaNaH~ 172 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK-------ELLLPRLSEHDEIIAAK-----PCRVYANAHP 172 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHH-------HhhcccccccceEEEec-----cceeccccce
Confidence 8889999999933322221110 112222110 0000 000 01111111 1111224566
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee---eEeccccC----cceEEEEEcCCC-CEEEEEECCCcEE
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK---RTYAGFRK----KSNGVVQFDTTQ-NHFLAVGEDSQIK 610 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~---~~~~~~~~----~~~~~~~~~~~~-~~l~~~~~dg~i~ 610 (945)
..+.+++++.|...++++- +-.|.+|++.-.... ..+..+.. ..+++..|+|.. +.+...+..|.|+
T Consensus 173 yhiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 173 YHINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred eEeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 6789999999999999874 778999998643211 11222221 247778899865 5566677899999
Q ss_pred EEECCCCee------EE--EeecC------CCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC
Q 002264 611 FWDMDNVNI------LT--STDAE------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (945)
Q Consensus 611 iwd~~~~~~------~~--~~~~~------~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (945)
+-|++...+ +. .+... +-...|..+.|+++|+++++-+.- +++|||....+.++++..-|
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechH
Confidence 999984221 11 11110 112468899999999999987654 89999998887777666544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.8e-09 Score=108.07 Aligned_cols=292 Identities=9% Similarity=0.087 Sum_probs=180.8
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....+|...|..++--.+.+. ++++++|.+|++|.++........ ...+..+..|+.+|.++.|-.+
T Consensus 729 ~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t------------saCQfTY~aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT------------SACQFTYQAHKKPIHDIGFLAD 795 (1034)
T ss_pred ecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc------------ceeeeEhhhccCcccceeeeec
Confidence 445679999999876666554 889999999999998753221110 0012346789999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC-CCeeEEEEEeCCCcEEEEe-CCCceEEEec----
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFNFE---- 491 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~---- 491 (945)
-++++++ ||-|.+||.--|..+..+..-..| +.+..+.--++ ...++++.++...+|+++| ..+.....++
T Consensus 796 lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 796 LRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred cceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 9999877 788999998777655433222223 23333333343 3332455558899999999 7777665554
Q ss_pred -CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE-E
Q 002264 492 -GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE-W 569 (945)
Q Consensus 492 -~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i-w 569 (945)
+....+.++++.+ .|+.++++-.+|.|.+.|.+++..+-...........++ .|..+.++.... +..+.+ |
T Consensus 873 ~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHslaVnW 945 (1034)
T KOG4190|consen 873 PGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSLAVNW 945 (1034)
T ss_pred CCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cceeEeee
Confidence 3345678888866 457899999999999999998876654443322222222 244445554432 666666 7
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC----CeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
...++........... +.. ....-|..++++...+.+.+|.-.. ...+..+....-.+..++++.-|-..-+.
T Consensus 946 haldgimh~q~kpppe-pah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afL 1022 (1034)
T KOG4190|consen 946 HALDGIMHLQDKPPPE-PAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFL 1022 (1034)
T ss_pred hhcCCeeeeccCCCCc-chh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhh
Confidence 7666544433332211 111 1111245677777666777774221 11222333333334567888888666667
Q ss_pred EEECCCcEEE
Q 002264 646 VTTADNGFKI 655 (945)
Q Consensus 646 ~~~~dg~i~i 655 (945)
.|...|.|.+
T Consensus 1023 aGne~G~IaL 1032 (1034)
T KOG4190|consen 1023 AGNEHGAIAL 1032 (1034)
T ss_pred ccCCCCceee
Confidence 7888888765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-07 Score=100.04 Aligned_cols=215 Identities=14% Similarity=0.001 Sum_probs=127.8
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeC---cCcEEEEEcCCCCcccccccccccccccCccccccccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (945)
+|-.+..-......+.. +.+....|||||+.+++..+. +..|.++|+.+++... +.
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt 229 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IA 229 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------Ee
Confidence 55555433333333333 388899999999863443332 3578889998876532 22
Q ss_pred CCCccEEEEEEcCCCCEEEEEE-CC--CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAF-TK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIK 478 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~-~d--g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~ 478 (945)
...+.....+|||||+.|+... .+ ..|.++++.+++. + .+..+........|+|||+.+++.+ ...+ .|.
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy 304 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIF 304 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEE
Confidence 2445566788999998877543 33 4688888877653 2 2333333344568999999644443 3333 577
Q ss_pred EEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC---------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 479 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
+.|..+.....+...... ...|+| +|+.++..+.. ..|.+.|+.++.... +... .......|+||
T Consensus 305 ~~dl~~g~~~rlt~~g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 305 MKKLNSGSVEQVVFHGKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSD 378 (419)
T ss_pred EEECCCCCeEeCccCCCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCC
Confidence 777444333333322111 236665 66777666543 257777877765433 3322 22336889999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
|+.++..+.. .+...+.+.++...
T Consensus 379 G~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 379 GGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCEEEEEEcc-CCcEEEEEEecCCC
Confidence 9999887643 23455777777543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.2e-07 Score=108.14 Aligned_cols=257 Identities=14% Similarity=0.135 Sum_probs=157.4
Q ss_pred EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC-
Q 002264 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT- 426 (945)
Q Consensus 348 ~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~- 426 (945)
..+++++++..++++-+..+.|.+||... +.+.. +. ....... ..-..-.++-.....+++++++..|.++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~--ig--~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQ--IG--STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEE--Ec--cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46789886555777777788999999754 32210 00 0000000 000000112234678999999887666544
Q ss_pred CCcEEEEEccCCccccccee-------eccc-------cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec
Q 002264 427 KHLIQLYSYAGSNDLRQHSQ-------IDAH-------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~-------~~~h-------~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~ 491 (945)
++.|+++|..++.. ..+.. +.+. -...+.++|+|++.. ++++.+.++.|++|| .++. +..+.
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~-v~~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGV-TRVFS 721 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCe-EEEEe
Confidence 56799999877532 21100 0000 113468999995443 677778889999999 4443 33332
Q ss_pred CC---------------CCCEEEEEeeecCCcc-EEEEEEcCCeEEEEEccCCCeeEEecC-------------C-----
Q 002264 492 GH---------------EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDA-------------P----- 537 (945)
Q Consensus 492 ~~---------------~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~----- 537 (945)
+. -.....+++++ ++. ++++.+.++.|++||++++........ .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 21 12345678876 444 566667789999999887653221100 0
Q ss_pred ---CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc------------cCcceEEEEEcCCCCEEEE
Q 002264 538 ---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLA 602 (945)
Q Consensus 538 ---~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~ 602 (945)
......++++++|+.+++-+ .++.|++||..++......... .-.....++++++|+.+++
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs----~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADS----YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEEC----CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 01235789999998766655 3889999999887655332110 0013567899999998888
Q ss_pred EECCCcEEEEECCCCee
Q 002264 603 VGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 603 ~~~dg~i~iwd~~~~~~ 619 (945)
-+.++.|++||+.++..
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999998765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.4e-07 Score=97.81 Aligned_cols=308 Identities=10% Similarity=0.040 Sum_probs=172.0
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCC----------eE-EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----------WC-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~i-~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
..+++++.+|.+..+|..+++.......... .+ ..+.. ++..++.++. ++.++.+|..+|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence 4677777888888888888888776654331 00 01111 3445555553 788999999999987
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC---CccEEEEcCCCCEEEEEECCCcEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP---NLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
-....... ......+. +..+++++.+|.++.+|..+|+.+.......... ...+... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 76654322 11111222 4577788889999999999999988776432100 0011111 233566777888999
Q ss_pred EEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCC
Q 002264 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (945)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (945)
.+|..++...-+ .... .|.+.
T Consensus 219 a~d~~~G~~~W~-~~~~--------------~~~~~-------------------------------------------- 239 (394)
T PRK11138 219 AVLMEQGQLIWQ-QRIS--------------QPTGA-------------------------------------------- 239 (394)
T ss_pred EEEccCChhhhe-eccc--------------cCCCc--------------------------------------------
Confidence 888888732111 0000 00000
Q ss_pred CCCC-cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccc
Q 002264 735 TDKP-KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (945)
Q Consensus 735 d~~i-~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (945)
..+ +++++ ...++ + .+..++.++.+|.+..+|... |+. +|
T Consensus 240 -~~~~~~~~~-------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~t------G~~-------~W 280 (394)
T PRK11138 240 -TEIDRLVDV-------------------DTTPV----V--VGGVVYALAYNGNLVALDLRS------GQI-------VW 280 (394)
T ss_pred -cchhccccc-------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCC------CCE-------EE
Confidence 000 00000 00011 0 123355555566666555322 111 22
Q ss_pred cCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCC-CCeeEEEeecCCCceEEEee
Q 002264 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGT 892 (945)
Q Consensus 814 ~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~~~~~~lasg~ 892 (945)
....+ ....+.. .+++.++...+|.+..+|..+++.+....... ....+.... ++ .|+.++
T Consensus 281 ~~~~~--------------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~ 342 (394)
T PRK11138 281 KREYG--------------SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGD 342 (394)
T ss_pred eecCC--------------CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEe
Confidence 22110 0111222 23444444448999999999998776543211 122333333 33 677889
Q ss_pred cCceEEEEecccceEEEEecCCCcceeE-EEecCCcceeeeecCCceEEEEecC
Q 002264 893 EDSTIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 893 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.||.|++.|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|+.+++|
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeCC
Confidence 9999999999999988877644333332 222 24467788999999988865
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-06 Score=82.35 Aligned_cols=238 Identities=13% Similarity=0.165 Sum_probs=138.2
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCC--cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEE
Q 002264 412 VAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (945)
Q Consensus 412 i~~s~~g~~las~~~dg~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 489 (945)
++.+.+|+.||.- .|..|.|=..+.. ..+......+.....-..++||||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 5778899999987 4556666655432 11222222223333457799999999 89999999999999977766665
Q ss_pred ecCC-------CCCEEEEEeeecCC----ccEEEEEEcCCeEEEEEccCC-----CeeEEecC---CCCeEEEEEEcCCC
Q 002264 490 FEGH-------EAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTM-----GSRVDYDA---PGHWCTTMLYSADG 550 (945)
Q Consensus 490 ~~~~-------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~---~~~~i~~~~~s~~~ 550 (945)
+... ...|.++.|..... ...|++-..+|.++-|-+..+ .....+.. ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 5432 23566666643221 135777788888887776332 12223222 34589999999999
Q ss_pred CEEEEEeecCCCCce-------EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 002264 551 SRLFSCGTSKDGDSF-------LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
+.|+++|.....++. +.-|.+-++.+- .....+.+...-.... +..+|.+-+.......
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py-----------yk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY-----------YKQVTSSEDDITASSK---RRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCc-----------EEEccccCcccccccc---ccceeeccceeeeecc
Confidence 999988863322211 222222211111 1000111111100111 1223443332222211
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (945)
....+.|..+..||||+.||+...+|.|.+|++.+- ...+.+.
T Consensus 226 --~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL-~~~~~W~ 268 (282)
T PF15492_consen 226 --GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL-RLQRSWK 268 (282)
T ss_pred --ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc-hhhcccc
Confidence 122347999999999999999999999999999765 3344443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.1e-07 Score=83.76 Aligned_cols=252 Identities=13% Similarity=0.019 Sum_probs=152.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCC-----CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPS-----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~-----g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (945)
+|++...+....... +.+.|.|. -. +||.|+..|...+|...+.+... ++
T Consensus 56 i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~-~la~gG~~g~fd~~~~~tn~~h~----~~-------------- 110 (344)
T KOG4532|consen 56 INSHYSNPKGIVEFY------TGMTFTPGSFINKCV-TLADGGASGQFDLFACNTNDGHL----YQ-------------- 110 (344)
T ss_pred eccccCCchhhEEee------ecccccchHhhcccc-EEEeccccceeeeecccCcccce----ee--------------
Confidence 566655553332222 44556552 22 48999999999999998765431 11
Q ss_pred ccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCcccccceeeccccc--cEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
...|...|+-+.=.-+ .--+..++.|.++++.+++.+..-. .-|.. .+.++++++|++ ++++.+....|-
T Consensus 111 cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 111 CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVF 183 (344)
T ss_pred ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcce
Confidence 1223332222211111 2245667889999999988654322 12333 388999999999 889999888999
Q ss_pred EEe--CCCceEEE--ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-----EecCCCCeEEEEEEcCC
Q 002264 479 VWE--LSGRKLFN--FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-----DYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 479 vwd--~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~i~~~~~s~~ 549 (945)
.|. .+++.+.. .....+.-.+..|+. +...++++..||++.|||++...... +...|.+.+..+.|++-
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~s~--~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~ 261 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSFSE--NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY 261 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeeecc--CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC
Confidence 988 44444433 222333344555544 55789999999999999998765443 23346778999999986
Q ss_pred CCE-EEEEeecCCCCceEEEEeCCCCceeeEeccccC-------cceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 550 GSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 550 ~~~-l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
|.. |+.-+. +-+.+.+.|+++++-.+.+....+ ..+....|+.++..+.+.+++ .+.-|++.+
T Consensus 262 g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 262 GLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred CcceEEEEec---CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 542 222221 367899999999876554433222 124455566655555554433 234455443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-06 Score=94.13 Aligned_cols=198 Identities=10% Similarity=-0.014 Sum_probs=123.9
Q ss_pred cEEEEEEcCCCCE-EEEEEC---CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC--CcEEEEe
Q 002264 408 SVSRVAWSPDGNY-VGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE 481 (945)
Q Consensus 408 ~V~~i~~s~~g~~-las~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd 481 (945)
.+....|||||+. ++..+. +..|.++|+.+|+... +....+......|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7788999999985 664443 3468999998876433 3234555677889999986 34444444 4577778
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
..+.....+..+........|+| ||+.|+..+. .+ .|.+.|+.+++..... ..+.. ...|+|||+.++..+.
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCCc--CceECCCCCEEEEEEc
Confidence 44444556655544334456766 5666655553 33 5666777765553322 22221 2489999999988775
Q ss_pred cCC-----CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCe
Q 002264 559 SKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVN 618 (945)
Q Consensus 559 ~~d-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~ 618 (945)
..+ +...|.+.|+.++.......+. ......|+|+|+.++..+.+ ..+.+.++....
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 322 1247899999888754433321 22347899999988876632 236667775543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-08 Score=97.82 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=111.6
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.+..+.++|.|+ +||++..+....++++...... .+.++. ..+..-...++.+..+......-.++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~---------~~v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDV---------SCVPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeE---------eecccCcceeeeeeccceEEEEeecC
Confidence 556667788887 6888887777777776554331 111111 11122223344444333333333344
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe-cCCCCCEEEEEee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYSICPH 503 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-~~~~~~v~~~~~~ 503 (945)
....+.+|+...+.+. .+-||-+.+++++|+||++ +++++..|..|++-. ..-..+..| -||+..|..+++.
T Consensus 130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 5556677776654333 3558999999999999999 899999999999977 433344333 5799999999976
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCeeEEec
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 535 (945)
+ +..|+++|.|+++++||+.++.....+.
T Consensus 204 ~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 D---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c---CceeeecCCCCcEEEEecccCCcccccc
Confidence 4 3579999999999999999988775443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-06 Score=80.85 Aligned_cols=255 Identities=13% Similarity=0.151 Sum_probs=134.8
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCC--CeeEEEeecCC-CCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccc
Q 002264 591 VQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~-~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
++.+.+|+.|++. .|..|.|-..++ ...+.....+. ....-..++||||+..||.+...|+|++||+... .+...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 4556777666554 455666655443 12333333222 2235678999999999999999999999999754 33222
Q ss_pred ccCCcc-ccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccccee
Q 002264 668 VENPPF-EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (945)
Q Consensus 668 ~~~~~~-~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 746 (945)
-..... ......|..+.|-+... ...-...+++-..+|.++-|-+...
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~-------------------------------s~~ws~ELlvi~Y~G~L~Sy~vs~g 129 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKK-------------------------------SAQWSYELLVINYRGQLRSYLVSVG 129 (282)
T ss_pred CcccccCCccccceeeeEeecccc-------------------------------ccccceeEEEEeccceeeeEEEEcc
Confidence 111111 11112233333321110 0011122344445566666665332
Q ss_pred ecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCc-eeeeeccccccCCCcccccccc
Q 002264 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK-ATASAVPQHWLPSSGLLMANDV 825 (945)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 825 (945)
...+......+.........|.++.++|..+.|+++|.... .++. ......+..|.+-++
T Consensus 130 t~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------------~~~~s~a~~~GLtaWRiL~~------- 190 (282)
T PF15492_consen 130 TNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------------QDGMSKASSCGLTAWRILSD------- 190 (282)
T ss_pred cCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------------CCccccccccCceEEEEcCC-------
Confidence 22222222222222335678999999999988887776411 0000 000111222222211
Q ss_pred cCCCcCCceeEEeecCCCceEEecCCC------eEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEE
Q 002264 826 AGVNLEEAVPCIALSKNDSYVMSATGG------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899 (945)
Q Consensus 826 ~~~~~~~~i~~l~~s~dg~~la~~sd~------~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~v 899 (945)
+|..+.+....++ +..+|.+.+.+...........|..|..|| ||.+||+...+|.|.+
T Consensus 191 --------------~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsL 255 (282)
T PF15492_consen 191 --------------SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSL 255 (282)
T ss_pred --------------CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEE
Confidence 1222222211111 124455444333222223456799999999 9999999999999999
Q ss_pred EecccceEEEEec
Q 002264 900 YNVRVDEVKSKLK 912 (945)
Q Consensus 900 wd~~~~~~~~~l~ 912 (945)
|++.+-.+...+.
T Consensus 256 W~iPsL~~~~~W~ 268 (282)
T PF15492_consen 256 WEIPSLRLQRSWK 268 (282)
T ss_pred EecCcchhhcccc
Confidence 9999877666554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.9e-06 Score=83.42 Aligned_cols=254 Identities=14% Similarity=0.169 Sum_probs=153.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcC-cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..-.++.+|.....++.+-..| ...+||..+++..... + .-..+.|.|| -.||+||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~----~-------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL----W-------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE----c-------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 3446788886555788887776 4678999998876421 0 0112345666 5899999999986
Q ss_pred E-----CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEE
Q 002264 425 F-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 425 ~-----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~ 499 (945)
- ..|.|-|||... .++.+.++..|.-.-..+.+.|||+. |+.+ +|-|.---.+|+....+......
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~t--LvVA--NGGI~Thpd~GR~kLNl~tM~ps--- 139 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGET--LVVA--NGGIETHPDSGRAKLNLDTMQPS--- 139 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCE--EEEE--cCCCccCcccCceecChhhcCCc---
Confidence 3 357899999983 23444467777777788999999984 4443 22221111233332222211111
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--e--cCCCCeEEEEEEcCCCCEEEEEeecCC---CCceEEEEeCC
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--Y--DAPGHWCTTMLYSADGSRLFSCGTSKD---GDSFLVEWNES 572 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~--~~~~~~i~~~~~s~~~~~l~~~~~~~d---~~~~i~iwd~~ 572 (945)
+. ..|..+++.+.. + ..+...|..+++.++|..++..-...+ .-..+.+++..
T Consensus 140 ----------L~----------~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g 199 (305)
T PF07433_consen 140 ----------LV----------YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG 199 (305)
T ss_pred ----------eE----------EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence 12 222222222222 2 234557889999999887766543221 11233344332
Q ss_pred CCceeeEeccc------cCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 573 EGTIKRTYAGF------RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 573 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
+....+... -...+.+|++++++..+++.+ ..|.+.+||..+++.+...... .+..++..+++ +++
T Consensus 200 --~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ 272 (305)
T PF07433_consen 200 --GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLV 272 (305)
T ss_pred --CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEE
Confidence 222222211 112688999999999887776 6788999999999999887654 45778877776 555
Q ss_pred EEECCCcE
Q 002264 646 VTTADNGF 653 (945)
Q Consensus 646 ~~~~dg~i 653 (945)
+.+. |.+
T Consensus 273 ssG~-G~~ 279 (305)
T PF07433_consen 273 SSGQ-GQL 279 (305)
T ss_pred eCCC-ccE
Confidence 5443 443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=91.14 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=87.1
Q ss_pred CcCCceeEEeecCCCceEEecCCCeEEEEeccCce---EEEEecCCCC-----CeeEEEeecCCCceEEEeecCceEEEE
Q 002264 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK---VMTTFMSPPP-----ASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (945)
Q Consensus 829 ~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~---~~~~~~~h~~-----~i~~l~~s~~~~~~lasg~~dg~v~vw 900 (945)
.|...|.++.|..|...+.++.|=+|.+|+++-.. .+..++.|.- -|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 48888999999999999999989999999976321 2344555543 389999999777788888999999999
Q ss_pred ecccceE------EE--E--------ecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 901 NVRVDEV------KS--K--------LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 901 d~~~~~~------~~--~--------l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
|++...+ +. + +.+-...|..+.|+++|+++++-+. -+|++||.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence 9984321 11 1 1122356888999999999996653 46999996
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-06 Score=81.89 Aligned_cols=208 Identities=5% Similarity=-0.077 Sum_probs=135.9
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|............-.|...|+-+.=--+.+.-+..++.|.++++.++..+.... .-|.
T Consensus 98 ~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---------------------~~h~ 156 (344)
T KOG4532|consen 98 LFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---------------------AVHN 156 (344)
T ss_pred eecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---------------------eeec
Confidence 6665544444444444555444333222332235566788888888886554321 1132
Q ss_pred c--cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 407 I--SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 407 ~--~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
. .+.++++|+|++++++.+....|..|.++.................-.+..|+.... .|+++..||++.||| ..
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecc
Confidence 2 388999999999999999999999999986543322212333445567888998887 899999999999999 43
Q ss_pred Cc-eE----EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC--------eEEEEEEcCCC
Q 002264 484 GR-KL----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--------WCTTMLYSADG 550 (945)
Q Consensus 484 ~~-~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~i~~~~~s~~~ 550 (945)
.. +. .+-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|+++......+..... .|..-.|+.++
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 32 22 2224588999999999765556777777778899999998766554433322 25556666666
Q ss_pred CEEEEEe
Q 002264 551 SRLFSCG 557 (945)
Q Consensus 551 ~~l~~~~ 557 (945)
..+.+..
T Consensus 315 ~s~~v~~ 321 (344)
T KOG4532|consen 315 ESNDVKN 321 (344)
T ss_pred ccccccc
Confidence 5555543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-05 Score=87.97 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=112.2
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCC--CEE-----EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVY-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
.++.++.++.+.-+| .+|+.+.+...... ... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 566677788888889 78887765542210 000 0000011123467788899999999999999888776654
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc----eEEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (945)
....+.... + ..++++. .++.++-+|..+|+.+-.+....... ...... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 3 3455444 27889999999999887765431100 011111 1346777888999999999
Q ss_pred CCCeeEEEeecCCCC--CC---ccEEEEcC--CCCEEEEEECCCcEEEEECCCCc
Q 002264 615 DNVNILTSTDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 615 ~~~~~~~~~~~~~~~--~~---v~~v~~sp--~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
.+|+.+......... .. ...+..+| .+..++.++.+|.+..+|..++.
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999876654322110 00 11111223 34566677778888888887773
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-06 Score=83.58 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=147.0
Q ss_pred EEEEEcCC-CCEEEEEECCC-cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC-----CCcEEEEECCCC
Q 002264 589 GVVQFDTT-QNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-----DNGFKILANAIG 661 (945)
Q Consensus 589 ~~~~~~~~-~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-----dg~i~iw~~~~~ 661 (945)
..++.+|. ...++.+-.-| ...+||..+++....+.......---.-+||+||++|++.-. .|.|-|||...+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 45778884 44555555544 477899999999888765543222345789999999998744 478999999966
Q ss_pred ccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccc
Q 002264 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 741 (945)
.+.+..+..+-...+ .+.+.|||+.|+.+.++-...=+.... .+-....+-++...
T Consensus 88 ~~ri~E~~s~GIGPH-----el~l~pDG~tLvVANGGI~Thpd~GR~-------------------kLNl~tM~psL~~l 143 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPH-----ELLLMPDGETLVVANGGIETHPDSGRA-------------------KLNLDTMQPSLVYL 143 (305)
T ss_pred cEEEeEecCCCcChh-----hEEEcCCCCEEEEEcCCCccCcccCce-------------------ecChhhcCCceEEE
Confidence 566666666555433 478999997776654432111000000 01111111222222
Q ss_pred ccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeee-ccccccCCCccc
Q 002264 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA-VPQHWLPSSGLL 820 (945)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 820 (945)
|..+ ........++. ..|...|..+++.++|..++..-..|.-. ...+.--..... .+.........
T Consensus 144 d~~s---G~ll~q~~Lp~-~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~-------~~~PLva~~~~g~~~~~~~~p~~~- 211 (305)
T PF07433_consen 144 DARS---GALLEQVELPP-DLHQLSIRHLAVDGDGTVAFAMQYQGDPG-------DAPPLVALHRRGGALRLLPAPEEQ- 211 (305)
T ss_pred ecCC---CceeeeeecCc-cccccceeeEEecCCCcEEEEEecCCCCC-------ccCCeEEEEcCCCcceeccCChHH-
Confidence 2221 11112222221 22667899999999988555544333210 000000000000 01111111100
Q ss_pred ccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCce
Q 002264 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (945)
Q Consensus 821 ~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~ 896 (945)
... -...+-+|++++++.++++.+ .+.+.+||..+++.+.... -..+..++-.+ ++ ++++.+ .|.
T Consensus 212 ----~~~--l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~-~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 212 ----WRR--LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTD-DG-FLVSSG-QGQ 278 (305)
T ss_pred ----HHh--hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecC-Cc-eEEeCC-Ccc
Confidence 111 356788999999999998888 5789999999999887765 33466677766 55 555443 343
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-06 Score=89.13 Aligned_cols=289 Identities=15% Similarity=0.176 Sum_probs=188.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.-|.+.|+.+.-+... ++.+++.||.++.|.-..-.-+. + ..-+..|-..|.+++.|.+|.+
T Consensus 6 ymhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---f-------------VKhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---F-------------VKHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred hcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---e-------------hhhhHHHHHHHHhhhcccccee
Confidence 3578888888777553 69999999999999753311110 0 0225568899999999999999
Q ss_pred EEEEEC-CCcEEEEEccCCcccccceeeccccccEEEEEEecCCC-eeEEEEEeCCCcEEEEe--CCCce-EEEecCCCC
Q 002264 421 VGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE--LSGRK-LFNFEGHEA 495 (945)
Q Consensus 421 las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~~~l~s~s~d~~i~vwd--~~~~~-~~~~~~~~~ 495 (945)
++|++. |..++++|+.+-..+..+ .+..-.+.+ ++..++... ..+-++.-.++.+.++| ..+.. ...-.-|..
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhc-ccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 999877 999999999875443211 121122222 122222211 11344455678999999 33323 334455899
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccC------CCeeEE---------ecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVD---------YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~---------~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+|..+.+.+.. ..+++....|.|..|..+. ...... +........++.|+|+|..+...+.
T Consensus 146 PV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-- 221 (558)
T KOG0882|consen 146 PVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-- 221 (558)
T ss_pred ceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc--
Confidence 99999998865 5788888899999998762 111111 1122335789999999999998875
Q ss_pred CCCceEEEEeCCCCceeeEecc--------------------------------ccCcceEEEEEcCCCCEEEEEECCCc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAG--------------------------------FRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~ 608 (945)
+..|++++.++|+.++.+.. +.......+.|...+++|+.|+-=|
T Consensus 222 --DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 222 --DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred --ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 88999999999887654431 1111233467888899998887654
Q ss_pred EEEEECCCCeeEEEeecCCCC-----------------------CCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 609 IKFWDMDNVNILTSTDAEGGL-----------------------PNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~-----------------------~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
|++.++.++.+.+.+...... +.-..+.+.+|..+++++-....+++|
T Consensus 299 ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 889999998877765322100 000122355566667777667777776
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-05 Score=80.09 Aligned_cols=218 Identities=17% Similarity=0.153 Sum_probs=138.6
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEe-cCCCeeEEEEEeCCCcEEEEe-CCCceE
Q 002264 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA-YPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (945)
Q Consensus 411 ~i~~s~-~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~~~l~s~s~d~~i~vwd-~~~~~~ 487 (945)
+++|.+ ++.++++-...+.|..|+..++.... +. . .....+++. +++. ++.+..+ .+.++| .+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~-~-~~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----ID-L-PGPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EE-S-SSEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Ee-c-CCCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578998 67777777678999999998865321 21 1 127778888 6654 4545544 455669 666433
Q ss_pred EEecC-----CCCCEEEEEeeecCCccEEEEEEcC--------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 488 FNFEG-----HEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 488 ~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
..... .....+.+++.+ +|++.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 22221 334577888866 56666665543 456666655 33333322334578999999999887
Q ss_pred EEeecCCCCceEEEEeCCCCce----eeEeccccC--cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 555 SCGTSKDGDSFLVEWNESEGTI----KRTYAGFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
++.. ..+.|..+++..... .+.+..... .....+++..+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 477899998853221 222221111 136779999999888888889999999987 888888887733
Q ss_pred CCCccEEEE-cCCCCEEEEEE
Q 002264 629 LPNLPRLRF-SKEGNLLAVTT 648 (945)
Q Consensus 629 ~~~v~~v~~-sp~g~~l~~~~ 648 (945)
.+++++| .++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 7899999 46766666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.4e-07 Score=90.23 Aligned_cols=121 Identities=13% Similarity=0.209 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCC--------CCHHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHH
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFF--------FNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (945)
+.-+.|+|..||..+||.+||..|-++|.+. .++..+++++++|+...|+.-.+.=. ....+....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk-~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHK-VELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHhccchhhhHH
Confidence 4557899999999999999999999999976 12678999999999998887764421 00001123378999
Q ss_pred HHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccc
Q 002264 77 RKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRE 126 (945)
Q Consensus 77 ~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (945)
+.|.|+||++.+++.+|+.+.++++.|....+.++++....++.++...+
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~ 243 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS 243 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence 99999999999999999999999999998889999999999999876543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.63 E-value=8e-05 Score=76.24 Aligned_cols=221 Identities=15% Similarity=0.117 Sum_probs=142.5
Q ss_pred EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc-CCCCEEEEEEC
Q 002264 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-PDGNYVGVAFT 426 (945)
Q Consensus 348 ~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s-~~g~~las~~~ 426 (945)
.+++|.+....|+++.-..+.|..|+..+++... +... ....+++. +++.+++ +..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------~~~~--~~~G~~~~~~~g~l~v-~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------IDLP--GPNGMAFDRPDGRLYV-ADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------EESS--SEEEEEEECTTSEEEE-EET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------EecC--CCceEEEEccCCEEEE-EEc
Confidence 3678898444578887778999999998876431 1111 26777887 6655544 445
Q ss_pred CCcEEEEEccCCcccccceeec--c-ccccEEEEEEecCCCeeEEEEEeCC--------CcEEEEeCCCceEEEecCCCC
Q 002264 427 KHLIQLYSYAGSNDLRQHSQID--A-HVGAVNDLAFAYPNKLLCVVTCGDD--------KLIKVWELSGRKLFNFEGHEA 495 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~--~-h~~~v~~l~~s~~~~~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~~~ 495 (945)
.+ +.++|..+++... +.... . .....+++++.++|. +.++.... |.|..++..++.. .+...-.
T Consensus 60 ~~-~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~~ 134 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPDGKVT-VVADGLG 134 (246)
T ss_dssp TC-EEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETTSEEE-EEEEEES
T ss_pred Cc-eEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCCCeEE-EEecCcc
Confidence 44 5666988875432 22221 2 445789999999999 66665533 4577777445543 3333455
Q ss_pred CEEEEEeeecCCccEE-EEEEcCCeEEEEEccCCCe-----eEEecCCC--CeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 496 PVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGS-----RVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~-----~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
..+.++|+++ ++.| ++-+..+.|..++++.... ........ ...-.+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECCc--chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 6789999874 4555 5667788999999875433 11122222 34788999999987776553 78999
Q ss_pred EEeCCCCceeeEeccccCcceEEEEE-cCCCCEEEEEE
Q 002264 568 EWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVG 604 (945)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 604 (945)
++|.. |+.+..+..... .+++++| .++.+.|++.+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99987 888888776644 6888888 46666666554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00017 Score=68.57 Aligned_cols=137 Identities=9% Similarity=-0.054 Sum_probs=91.6
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~ 588 (945)
.+++.|+..+.+..-|..++.......... .+.+-+.- -|++++.+.. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 567777778888877877777666543332 23222221 4667777775 88999999999988877765443 22
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
......+++..+++|+.|+..+..|..+..++...+..+. ...+-+..|-...|..+...|.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEE
Confidence 3355778899999999999999999999888887665543 334445566223344444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.6e-06 Score=88.80 Aligned_cols=338 Identities=13% Similarity=0.112 Sum_probs=185.7
Q ss_pred EEEEEEcCCCCEEEEEEC----CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 409 VSRVAWSPDGNYVGVAFT----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
-+-.+|+|...++|+++. .|.|.||- ++|++-+.. +..-| +++++|+|..- .|+.|=.-|.+.+|. .+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cccee---hhhhccChHHH--HHhhccccceeEEEecCC
Confidence 344689999999998864 57898884 666643321 23333 66799999877 788888899999999 44
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--C--CC--eEEEEEEcCCCCEE----
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P--GH--WCTTMLYSADGSRL---- 553 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~--~~--~i~~~~~s~~~~~l---- 553 (945)
.+.-.....|..+|..+.|++ +|..++++..-|.|.+|.++..+.+..... | +. ...+...++++.-+
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 444444557999999999987 568999999999999998875444332221 1 11 23344555654322
Q ss_pred --EEEeecCCCCceEE-EEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 554 --FSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 554 --~~~~~~~d~~~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
++.+. +..+- .++.+.....+.. .-.-.|+|..++.++.+|+|+-.|- .|...........
T Consensus 169 KaaVtgD----e~alD~~fnwk~~~a~rs~---------~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTGD----ESALDEPFNWKESLAERSD---------EKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccCc----hhhhcccccCccchhhccc---------cccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 22221 11111 1211110000000 0112477889999999999988774 4555555443321
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEEC-CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILAN-AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (945)
..+-|.+...-+.+.-.+-++.++-+ .+|.... +..+..+.. .+++
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee--------------~~~vk~sgk--------~Ggr--------- 279 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEE--------------RCAVKVSGK--------LGGR--------- 279 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCchHH--------------hhhhhhccc--------cCCc---------
Confidence 33445554444444444433333322 2221000 000111000 0000
Q ss_pred CCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEE
Q 002264 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (945)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~ 789 (945)
.| .++++...|-++ -. .. .. ......+.+++++..+..+..+...|.+.
T Consensus 280 ---------------qG-giA~sEssGvLr---~~-----eK---yg----~e~ge~~~c~cY~~~~~~l~agt~~gnv~ 328 (1416)
T KOG3617|consen 280 ---------------QG-GIACSESSGVLR---KS-----EK---YG----LELGEGILCMCYGEKEIRLWAGTKEGNVT 328 (1416)
T ss_pred ---------------cC-cccccccccccc---CC-----cc---hh----hhcCCceEEEEEeccceEEEecccCCcEE
Confidence 00 022222222111 00 00 00 11456799999999999999999999999
Q ss_pred EEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC
Q 002264 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (945)
Q Consensus 790 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s 850 (945)
+|.-.... .....++..|...+... ..+.|+.+.|+|-...+++-+
T Consensus 329 ~w~~v~~~------f~g~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 329 IWLDVNKG------FQGDPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EeeecCcc------ccCCCCcceEEecCchh---------hccceEEEEeccccchhhhhh
Confidence 99532211 11112344455443221 346789999998666665554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.4e-07 Score=83.36 Aligned_cols=209 Identities=13% Similarity=0.181 Sum_probs=124.4
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.|+.+.|+.+- .|+++..++.+.......+.+... |+=..... +...+..|.++-.+-+.+--+..+++++
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecC
Confidence 37777777664 588888888887777655544321 11111111 1122334444444444455678899999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-----CCCcEEEEe-CCCc-eEEEecCCCCCEE
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGR-KLFNFEGHEAPVY 498 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-----~d~~i~vwd-~~~~-~~~~~~~~~~~v~ 498 (945)
.||.+.+.+.+.- ++....+..-...-.+.+....++ .+.+++ .-+..+.|+ ...+ .+.... ....|.
T Consensus 109 ~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~ 183 (319)
T KOG4714|consen 109 ADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVT 183 (319)
T ss_pred CCceEEEEechHH--Hhhhhhcccccccccccceeeccc--EEecCCcceEeeccceeeeccccccccccccc-ccccch
Confidence 9999999987652 221111111111122333344454 333322 112234444 1111 111111 223488
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
+++-+|... +.+++|+.||.+.+||.+...... .+..|...+..+-|+| ++..|++++. +|.+..||..+
T Consensus 184 ~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 999888754 788999999999999998874443 4566788999999999 5678888885 99999999765
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=64.39 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=37.3
Q ss_pred ceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
|+++.++.+|.+.|++|+|+|++.+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-05 Score=81.23 Aligned_cols=219 Identities=15% Similarity=0.110 Sum_probs=137.6
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeec
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~ 505 (945)
+|+|..||..+|+.+-... +..-.....+. ..+++. .+++++.++.+..|| .+|+.+.++.. ...+..... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-
Confidence 6889999998887765332 21111222222 333455 567778899999999 79998877764 222111111 1
Q ss_pred CCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCC---CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
.+..++.++.++.+..+|..+++..... .... ..........++..++++.. ++.|..+|+++|+.+..+.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 2346777778899999999999988874 3221 11122223333777777764 7899999999999988776
Q ss_pred cccCcc---------eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCc
Q 002264 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 582 ~~~~~~---------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
...... ...-.+..++ .++.++.++.+..+|+.+++.+.... .. .+... ...++..+++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~~-~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYSL-PSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECEC-EECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccCC-ceeeCCEEEEEeCCCE
Confidence 643211 1122222234 78888888864445999999665333 21 22221 3457788888889999
Q ss_pred EEEEECCCCcc
Q 002264 653 FKILANAIGLR 663 (945)
Q Consensus 653 i~iw~~~~~~~ 663 (945)
|..||+.+++.
T Consensus 224 l~~~d~~tG~~ 234 (238)
T PF13360_consen 224 LYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCCE
Confidence 99999999843
|
... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-05 Score=87.54 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=71.3
Q ss_pred CCceeEEeecCCCceEEecC--CCeEEEEeccCceE------------EEEecCCCCCeeEEEeecCCCceEEEeecCce
Q 002264 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKV------------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~~~------------~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~ 896 (945)
......+++||||+++++++ ++++.|.|+.+.+. ..+..- .......+|.+ +|+...+-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 46678899999999999888 68899999987552 333332 23356788999 8888888899999
Q ss_pred EEEEeccc----------ceEEEEecCCCccee-----EEEecCCcceeeee
Q 002264 897 IHIYNVRV----------DEVKSKLKGHQKRIT-----GLAFSTSLNILVSS 933 (945)
Q Consensus 897 v~vwd~~~----------~~~~~~l~~h~~~V~-----~l~~s~dg~~l~s~ 933 (945)
|..|++.+ ...+..+.-|-.+-. +=.-.|||+||++.
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 99999986 234444543332211 11235788888875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=87.50 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=110.9
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc-cccceeeccccccEEEEEEecCCCee-EEEEEeCCCcEEEEeCCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLL-CVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~~-~l~s~s~d~~i~vwd~~~~ 485 (945)
.+..+..++++++||++..+....++++..... .+..... .-...-+++.|..+.... .....+....+.+|.....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344556778888888888887777777665433 2211111 122334455555554421 2223344556666662213
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
+....-||-+.++.++|++ |+++|+++..|..|++-.+...-.+..+. +|...|..++.-++ ..|++++ ||+
T Consensus 143 ~~~~~lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~s----GD~ 215 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGS----GDK 215 (390)
T ss_pred CcchhhhhhhhhheeeecC--CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecC----CCC
Confidence 3445568999999999987 55899999999999998776655555444 48888999988665 4477776 499
Q ss_pred eEEEEeCCCCceeeEec
Q 002264 565 FLVEWNESEGTIKRTYA 581 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~ 581 (945)
++++||+.+|+.+.++.
T Consensus 216 tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCD 232 (390)
T ss_pred cEEEEecccCCcccccc
Confidence 99999999999887665
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-07 Score=90.97 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=123.0
Q ss_pred EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC
Q 002264 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (945)
Q Consensus 348 ~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d 427 (945)
+.++||-+-.-.-++.+.+..|-+-|+.+|-... +. .++.|.++.|...+.++..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence 3446764322112344457888999998875431 22 56789999999999999999999
Q ss_pred CcEEEEEccCCccc--ccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCCce---EEEecCCCCCEEEE
Q 002264 428 HLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSI 500 (945)
Q Consensus 428 g~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~~~---~~~~~~~~~~v~~~ 500 (945)
|.|..+|+..+..- ... .--.|.+.|+++.... +++ +|++.+.+|.|++|| ..-++ +..+.||...-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999865211 111 1224899999998877 566 889999999999999 54455 88999997766656
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
-++-.+....+++++.|...++|.++.+....++..+.
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 55556666789999999999999999888777665543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.8e-06 Score=82.22 Aligned_cols=248 Identities=12% Similarity=0.126 Sum_probs=145.3
Q ss_pred cccCCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.+.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|... +++.|-..|.|.+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78889999999999999876555 45556 78999999998876 8889999999999
Q ss_pred Ee-C-CCceEEEecC--CCCCEEEEEeeecC----CccEEEEEEcCCeEEEEEccCCCee--EEecC-CCCeEEEEEEcC
Q 002264 480 WE-L-SGRKLFNFEG--HEAPVYSICPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSR--VDYDA-PGHWCTTMLYSA 548 (945)
Q Consensus 480 wd-~-~~~~~~~~~~--~~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~-~~~~i~~~~~s~ 548 (945)
|| . ....+..+.+ ...+|..++..+.+ -|.+++....+ ...|.+...... ..... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 3 3333333332 23344444322110 12333333322 344654332221 11222 234566677777
Q ss_pred CCCEEEEEeecCCCCceEE----EEeCCCCceeeEec-cc---cCcc---eEEEEEcCCCCEEEE-EECCCcEEEEECCC
Q 002264 549 DGSRLFSCGTSKDGDSFLV----EWNESEGTIKRTYA-GF---RKKS---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~----iwd~~~~~~~~~~~-~~---~~~~---~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (945)
..+.++.....+.+-..++ --|-.+|.++-.-+ ++ .... -..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666665543211111111 11222332221111 11 0000 111222344455555 44678899999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcC-C-CCEEEEEECCCcEEEEECC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSK-E-GNLLAVTTADNGFKILANA 659 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp-~-g~~l~~~~~dg~i~iw~~~ 659 (945)
++.++.+... .+|.+++... + +.+|++-.+ ..++|+..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhheec-ceEEEEecC
Confidence 9999998775 3677776654 2 446666654 488888654
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-07 Score=84.22 Aligned_cols=133 Identities=21% Similarity=0.222 Sum_probs=97.8
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 002264 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (945)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (945)
...++++|++|+++.|++.+....+.-... ...+.|.|++|+|+|||..++..+|+.+.|+.+.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467899999999999999998763221111 1348999999999999999999999999999998775446678888999
Q ss_pred hhcccCccc--hhhhcccCCchHHHHHHHHHHHhhccCCccccccccCCCCC-chHHHHHHHHHHHH
Q 002264 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNW 181 (945)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~ 181 (945)
+|...+... ...+..+- ....|+.+.+.+.+.+-...- +| .+.|..++.+....
T Consensus 84 lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~ 140 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSA 140 (145)
T ss_pred HHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence 888876654 22222221 337789999998887655332 44 45688888776544
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-05 Score=88.59 Aligned_cols=277 Identities=12% Similarity=0.163 Sum_probs=157.5
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
+.|.++.|.-++.. ++.+..+|.|.+-|..+..... ...-.+.|.+++||||++.++..
T Consensus 69 ~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred cceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEEE
Confidence 58999999999986 6777889999999887765432 23346789999999999999999
Q ss_pred ECCCcEEEEEccCCcccccceeecc---ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC-CceEEEecCCCCCEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GRKLFNFEGHEAPVYS 499 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~-~~~~~~~~~~~~~v~~ 499 (945)
+..+++.+-.- +-..+... .+.. ..+....+-|-....+ +-|+ .|....-+ .. .+.+.....+ +.=++
T Consensus 128 T~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~ 200 (1265)
T KOG1920|consen 128 TGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHKTS 200 (1265)
T ss_pred eCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCCce
Confidence 88887766542 21222110 1100 0111222333222111 1111 11111111 00 0000000111 12234
Q ss_pred EEeeecCCccEEEEE-----EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-
Q 002264 500 ICPHHKENIQFIFST-----AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE- 573 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~- 573 (945)
|+| .+||+++++. ...+.|++||-+ +.....-......-.+++|-|.|..+++.....+ ++.|.++.-..
T Consensus 201 IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNGL 276 (1265)
T KOG1920|consen 201 ISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNGL 276 (1265)
T ss_pred EEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCCc
Confidence 565 5688888873 233789999865 3322222223334568999999999988775433 55788887432
Q ss_pred --CceeeEeccccCcceEEEEEcCCCCEEEE---EECCCcEEEEECCCCee--EEEeecCCCCCCccEEEEcCC-CCEEE
Q 002264 574 --GTIKRTYAGFRKKSNGVVQFDTTQNHFLA---VGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKE-GNLLA 645 (945)
Q Consensus 574 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp~-g~~l~ 645 (945)
|+....+..... .+..++|+.++..|++ ......|++|-..+... .+.+..... .-+.|+|. ...+.
T Consensus 277 ~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLH 351 (1265)
T ss_pred cccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEE
Confidence 222222222222 3788999999999888 44555599999887653 333433322 22888883 23344
Q ss_pred EEECCCcEEEEEC
Q 002264 646 VTTADNGFKILAN 658 (945)
Q Consensus 646 ~~~~dg~i~iw~~ 658 (945)
+-..+|...+++.
T Consensus 352 v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 352 VLRESGQRLVRDF 364 (1265)
T ss_pred EEecCCcEEEEEE
Confidence 4446666655554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-07 Score=89.17 Aligned_cols=164 Identities=12% Similarity=0.141 Sum_probs=121.0
Q ss_pred EEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC----Cee
Q 002264 456 DLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSR 531 (945)
Q Consensus 456 ~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~ 531 (945)
.++|+-+-.-.. ++.+.+..|-+-|..+...+.|. ..+.|.++.|... +.+++.|+.+|.|..+|++.. ...
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCCCcc
Confidence 346764433213 45566777888884333344444 5677888888764 369999999999999999876 333
Q ss_pred EEecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCce---eeEeccccCcce-EEEEEcCCCCEEEEEECC
Q 002264 532 VDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSN-GVVQFDTTQNHFLAVGED 606 (945)
Q Consensus 532 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d 606 (945)
...-.|+..|+++..-. ++.+|++.+. +|.|.+||.+.-+. ++.+.||-+... .-+.+.+....++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 34456777888888777 7778887765 99999999987666 889999866332 224466777889999999
Q ss_pred CcEEEEECCCCeeEEEeecCC
Q 002264 607 SQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~ 627 (945)
...+||.+++|.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999999887654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0064 Score=69.24 Aligned_cols=554 Identities=13% Similarity=0.078 Sum_probs=259.3
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~- 417 (945)
..++...-..|+.+-++| +|++||.-|.=.+-.+.+...... ...+ ...+. .-++|..+..-.+
T Consensus 301 e~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs-y~~i-----------let~~-NLgPI~Dm~Vvd~d 365 (1096)
T KOG1897|consen 301 EYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS-YVVI-----------LETFV-NLGPIVDMCVVDLD 365 (1096)
T ss_pred EecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc-hhhh-----------hhhcc-cccceeeEEEEecc
Confidence 344555566777777787 688898877656666544332210 0000 00011 2247777766542
Q ss_pred ---CCEEEEEE---CCCcEEEEEccCCcccccceeeccccccEEEEE--EecCCCeeEEEEEeCCCcEEEEeCCCce-EE
Q 002264 418 ---GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRK-LF 488 (945)
Q Consensus 418 ---g~~las~~---~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~~~~~~~l~s~s~d~~i~vwd~~~~~-~~ 488 (945)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+- -+.-++...+++. ..
T Consensus 366 ~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf-~~eTrvl~i~~e~ee~ 442 (1096)
T KOG1897|consen 366 RQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSF-ISETRVLNISEEVEET 442 (1096)
T ss_pred ccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEe-ccceEEEEEccceEEe
Confidence 23555554 488999986433221111113444 44577777 4443332 333332 2333444533331 11
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
...+.......+..+.- +++.|+=.. ...||+++-. .....+..+.. ++....+.+...++.++. ++.+..
T Consensus 443 ~~~gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y 513 (1096)
T KOG1897|consen 443 EDPGFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFY 513 (1096)
T ss_pred ccccccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEE
Confidence 22233333444444332 223332222 3456666533 23333334443 333334445556666552 567777
Q ss_pred EeCCCCceeeEeccccCcceEEEEEcCCC------CEEEEEECCCcEEE-EECCCCeeEEEe--ecCCCCCCccEEEEcC
Q 002264 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIKF-WDMDNVNILTST--DAEGGLPNLPRLRFSK 639 (945)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~dg~i~i-wd~~~~~~~~~~--~~~~~~~~v~~v~~sp 639 (945)
.++..+.............+.|+.++|-| ..+++|..+..+.+ .-..+...+... ....-...|.-.++-.
T Consensus 514 ~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 514 LEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG 593 (1096)
T ss_pred EEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec
Confidence 77776664433333333468888888742 25666765444433 333444333322 2222223455556666
Q ss_pred CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCC-----CCCc
Q 002264 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR-----PSPI 714 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~-----~~~~ 714 (945)
|..+|.++..||.+.-+.+....-.+...+..... ..|+.--.|+..++.-+.+.++....+....... ....
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG--t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke 671 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG--TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE 671 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEcccceEccccccccC--CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH
Confidence 78999999999998766554331111111100000 0111112222222211111111111110000000 0000
Q ss_pred ccCCCCCccCCC-CCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEee
Q 002264 715 INGVDPTSRSMD-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (945)
Q Consensus 715 ~~~~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~ 793 (945)
........++.. ..++++.. +.+++..++... .....++| -......+++.+....+.+.+.......=
T Consensus 672 v~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iq---kl~irtvp----l~~~prrI~~q~~sl~~~v~s~r~e~~~~-- 741 (1096)
T KOG1897|consen 672 VNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQ---KLHIRTVP----LGESPRRICYQESSLTFGVLSNRIESSAE-- 741 (1096)
T ss_pred hhhhcccccccCCceEEEecC-CceEEEEecchh---hcceeeec----CCCChhheEecccceEEEEEecccccchh--
Confidence 111111112221 22333332 555555554322 11111222 22344566666644444444332211100
Q ss_pred cCCCCCCCCceeeeeccccccCCCcccccc-cccCCCcCCceeEEeecCC-CceEEecC-----------CCeEEEEecc
Q 002264 794 HRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSKN-DSYVMSAT-----------GGKISLFNMM 860 (945)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~~l~~s~d-g~~la~~s-----------d~~i~iwd~~ 860 (945)
.-+.......+.++|.++-+.+.. .+...+....+.++.|..| ++++++|. .|.|.||...
T Consensus 742 ------~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 742 ------YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred ------hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 001111222345566665553331 1211111223444557777 78888772 2678888887
Q ss_pred CceEEEEecC--CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCce
Q 002264 861 TFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (945)
Q Consensus 861 ~~~~~~~~~~--h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~ 938 (945)
.++.+..... -.+.+.++..- +|++||.- ...|++|+..+.+.++.-..|..++..+...-.|..++.|.-=+.
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVEF--NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred cCCceeeeeeeeeccceeehhhh--CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 7433333322 23456665544 57777644 567999999988777766678888888888888888887765554
Q ss_pred EEE
Q 002264 939 VTL 941 (945)
Q Consensus 939 i~v 941 (945)
+.+
T Consensus 892 itl 894 (1096)
T KOG1897|consen 892 ITL 894 (1096)
T ss_pred EEE
Confidence 433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.2e-05 Score=76.34 Aligned_cols=221 Identities=13% Similarity=0.077 Sum_probs=134.7
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccce
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~ 445 (945)
+|+|..||..+|+.+-+ .. +..-.....+. ..+++..+++++.++.+..||..+|+.+-...
T Consensus 2 ~g~l~~~d~~tG~~~W~-------~~----------~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS-------YD----------LGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TSEEEEEETTTTEEEEE-------EE----------CSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEE-------EE----------CCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 68899999988887632 11 11101122211 23357777778899999999999997654332
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe-cCCCC---CEEEEEeeecCCccEEEEEEcCCeE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEA---PVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
+.+. +...... ++. .++.++.++.+..+| .+|+.+... ..... ......... .+..++.+..++.|
T Consensus 64 -~~~~---~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l 134 (238)
T PF13360_consen 64 -LPGP---ISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV--DGDRLYVGTSSGKL 134 (238)
T ss_dssp -CSSC---GGSGEEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE--ETTEEEEEETCSEE
T ss_pred -cccc---ccceeee-ccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceE--ecCEEEEEeccCcE
Confidence 2111 1111222 344 455566788999999 999998874 32211 111122222 24678888889999
Q ss_pred EEEEccCCCeeEEecCCCCe----------EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEE
Q 002264 521 KAWLYDTMGSRVDYDAPGHW----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (945)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~----------i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 590 (945)
..+|+++++.+......... +..-....++ .++.+.. ++.+..+|..+++.+-... . . ....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~----~g~~~~~d~~tg~~~w~~~-~-~-~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG----DGRVVAVDLATGEKLWSKP-I-S-GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC----TSSEEEEETTTTEEEEEEC-S-S--ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC----CCeEEEEECCCCCEEEEec-C-C-CccC
Confidence 99999999998877664321 1122222344 5555543 5544444999998664222 1 1 2222
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCeeEEE
Q 002264 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (945)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (945)
.....+..+++++.++.|..||+.+|+.+..
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1456778888888999999999999987653
|
... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00015 Score=78.36 Aligned_cols=296 Identities=16% Similarity=0.171 Sum_probs=154.1
Q ss_pred eCCCCeEEEEE--------eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 353 sp~g~~llasg--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
||||+++|+.- +..+.+.|||+.+++... +......+....|||+|+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999766632 234688999998876542 11125678889999999999988
Q ss_pred ECCCcEEEEEccCCcccccceeecc-------c---------cccEEEEEEecCCCeeEEEEEe-CCCcEEEEeCCCceE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDA-------H---------VGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWELSGRKL 487 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~-------h---------~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd~~~~~~ 487 (945)
. ++.|.+++..++...+. +..+ - -+.-..+-|||||+. |+... .+..|..+. +
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~-----~ 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP-----L 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE-----E
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE-----e
Confidence 5 57899999877744322 1112 0 112356889999994 44433 233333332 0
Q ss_pred EEecCCCC---CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-Ee----cCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 488 FNFEGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DY----DAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 488 ~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~----~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
........ .+..+.+ |...... . .-.+.++|+.+++... .. ......+..+.|.++++.++..-.+
T Consensus 131 ~~~~~~~~~yp~~~~~~Y-Pk~G~~n-p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRY-PKAGDPN-P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp EEESSSTESS-EEEEEE---BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCccccCCccccccc-CCCCCcC-C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 11111111 2333333 2221111 1 1135667887766532 21 2345578999999999955544433
Q ss_pred CC-CCceEEEEeCCCCceeeEeccccCcc---eEEEEEc-CCCCEEEE-EECCCc--EEEEECCCCeeEEEeecCCCCCC
Q 002264 560 KD-GDSFLVEWNESEGTIKRTYAGFRKKS---NGVVQFD-TTQNHFLA-VGEDSQ--IKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 560 ~d-~~~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
++ +...+.+.|..++............. .....+. +++..++. ...+|. |++++..++... .+... .-.
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~~~ 281 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--DWE 281 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--SS-
T ss_pred cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--cee
Confidence 32 34456778887776544443322222 2234444 66655554 446665 555666666644 33322 224
Q ss_pred cc-EEEEcCCCCEEEEEEC-C--C--cEEEEECC-CCccccccccCCccccccCcceeeeecccccceec
Q 002264 632 LP-RLRFSKEGNLLAVTTA-D--N--GFKILANA-IGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 632 v~-~v~~sp~g~~l~~~~~-d--g--~i~iw~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
|. -+.|+++++.|...+. + + .+..-++. .+ ..+.+...... -..+.|+|+|++++.
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~~~-----~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCEDGD-----HYSASFSPDGKYYVD 344 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTTSST-----TEEEEE-TTSSEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCCCCC-----ceEEEECCCCCEEEE
Confidence 54 4778888776654433 2 2 34444555 22 22222221111 147899999998864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00038 Score=70.98 Aligned_cols=137 Identities=9% Similarity=0.087 Sum_probs=89.2
Q ss_pred CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee------cCCCCceEEEEeCCCCceeeEeccccC------
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEGTIKRTYAGFRK------ 585 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------~~d~~~~i~iwd~~~~~~~~~~~~~~~------ 585 (945)
+++.++|.++++..-.+... ....+..+||++.++++.. .++..-.|.+||..+-.+...+.-..+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 36788887776654443322 2334678999999887543 122345799999999877765443321
Q ss_pred cceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 586 KSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.......++.+++++++.. --..|.|.|+..++.+..+..++. ..+-=+ ...-+.+.|.||.+.-..+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPS-GNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEE-ETTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEec-CCCceEEEecCCceEEEEECCC
Confidence 1123368889999988855 456799999999999998887642 222112 2245778889999998888743
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0011 Score=63.20 Aligned_cols=143 Identities=10% Similarity=0.115 Sum_probs=91.0
Q ss_pred EeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 002264 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (945)
Q Consensus 352 fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~ 431 (945)
.-+|.+.+++.||..+.+.--|..+|+..-+ . ++ ...|.+-+.- -|++++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We-------~----------il---g~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A----------IL---GVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEee-------h----------hh---CceeeeeeEE-ECCEEEEEEccCcEE
Confidence 3445566789999999999999999886532 1 11 1233332222 478899999999999
Q ss_pred EEEccCCcccccceeeccccccEE-EEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCcc
Q 002264 432 LYSYAGSNDLRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQ 509 (945)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 509 (945)
+.+.++|+.+..+..+. .|. .....+++. ++..|+.|++.+..| .+..++.+.+-..+...+-++.+. + .
T Consensus 77 fl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~ 148 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-G 148 (354)
T ss_pred EEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-c
Confidence 99999997665332221 121 233456777 899999999999999 777787776543333333333332 2 2
Q ss_pred EEEEEEcCCeEEEE
Q 002264 510 FIFSTAIDGKIKAW 523 (945)
Q Consensus 510 ~l~s~~~dg~i~iw 523 (945)
.|+.+...|.+.--
T Consensus 149 sly~a~t~G~vlav 162 (354)
T KOG4649|consen 149 SLYAAITAGAVLAV 162 (354)
T ss_pred eEEEEeccceEEEE
Confidence 34455555555433
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-07 Score=60.76 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=37.0
Q ss_pred ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
++++.++.+|.+.|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 468899999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.8e-06 Score=89.46 Aligned_cols=334 Identities=11% Similarity=0.071 Sum_probs=179.2
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (945)
+-.+|+|...++++++.+....|.+.||- .+|++.+.....- .+.+++|+|..-.|+.|-+-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~--hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV--HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce--ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 44579999999999988877888898884 5666554433221 25669999988888888899999999987766555
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccc-cccccCCccccccCcceeeeecccccceec----cC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS-LRAVENPPFEALRTPIESVALKVSASSAVS----SG 696 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~----~~ 696 (945)
....| ..+|..+.||++|..++++..-|.+.+|...-..+. ...+-.|..... -...+..+++++.-++- +.
T Consensus 96 v~~th--~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~-ltl~cfRL~~~~Ee~~~laKaaV 172 (1416)
T KOG3617|consen 96 VVETH--PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ-LTLWCFRLSYDREEKFKLAKAAV 172 (1416)
T ss_pred eccCC--CCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhce-eeEEEEecCCChHHhhhhhhhhc
Confidence 44433 458999999999999999999999999988632111 011111111100 01233444555432211 11
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
.++...++..-.-++...-....-.-.++|..++.++.+|+|+-.|-.. ....+.--+ + -..+-|.+-.
T Consensus 173 tgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g-----~~~~V~k~d-----S-~vQmLf~~~~ 241 (1416)
T KOG3617|consen 173 TGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG-----RQRTVHKLD-----S-EVQMLFMGYC 241 (1416)
T ss_pred cCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC-----cEEEEEEcc-----c-hHHHHHhccc
Confidence 2222222211111111111112223456677777777778877666331 111111000 0 0122333333
Q ss_pred CeEEEeeecCeEEEEeecCCCC-------CCCCceee-eeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEe
Q 002264 777 VGLLALGSNGVQKLWKWHRNEQ-------NPSGKATA-SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (945)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~ 848 (945)
..++..-.+-++.++-+..... ...|+.-. ...+. ..-..|.+....--|......++|+|++.-+..++.
T Consensus 242 eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA-~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 242 EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIA-CSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccc-cccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence 3344444443444443322110 00000000 00000 001112211111122224577999999999999998
Q ss_pred cC-CCeEEEEecc-C------ceEEEEecC---CCCCeeEEEeecCCCceEEEeecC
Q 002264 849 AT-GGKISLFNMM-T------FKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTED 894 (945)
Q Consensus 849 ~s-d~~i~iwd~~-~------~~~~~~~~~---h~~~i~~l~~s~~~~~~lasg~~d 894 (945)
|. .|.+.+|--. + +.-..++.+ -.+.|+.+.|.| -...+++-+..
T Consensus 321 gt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~-~k~~~avn~~~ 376 (1416)
T KOG3617|consen 321 GTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP-IKSTAAVNTEE 376 (1416)
T ss_pred cccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc-ccchhhhhhhh
Confidence 88 6899999522 2 133444443 345699999999 66666555443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00029 Score=76.19 Aligned_cols=304 Identities=14% Similarity=0.080 Sum_probs=153.6
Q ss_pred cCCCCEEEEEeec-----CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE
Q 002264 547 SADGSRLFSCGTS-----KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 547 s~~~~~l~~~~~~-----~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (945)
|||+++++..... .+..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 5788887774320 11255789999999876655444 23577789999999998886 5789999988875443
Q ss_pred EeecCCC----------------CCCccEEEEcCCCCEEEEEECC-CcEEEEECCCCccccccccCCccccccCcceeee
Q 002264 622 STDAEGG----------------LPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (945)
Q Consensus 622 ~~~~~~~----------------~~~v~~v~~sp~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 684 (945)
.. ..+. ...-..+.|||||++||....| ..|..+.+........ ..+ .+..+.
T Consensus 78 lT-~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp------~~~~~~ 147 (353)
T PF00930_consen 78 LT-TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYP------EVESIR 147 (353)
T ss_dssp SE-S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-------EEEEEE
T ss_pred ec-cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCC------cccccc
Confidence 22 2220 1223678999999999877554 4444443321100000 000 001111
Q ss_pred ecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCC--CCcccccceeecCCcceeeecC-CCC
Q 002264 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD--KPKPWQLAEIVDSGQCRLVTMP-EST 761 (945)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~-~~~ 761 (945)
+-. .|...- .+.++++.+ +....+..+ ...
T Consensus 148 YPk-------------------------------------------~G~~np~v~l~v~~~~~----~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 148 YPK-------------------------------------------AGDPNPRVSLFVVDLAS----GKTTELDPPNSLN 180 (353)
T ss_dssp --B-------------------------------------------TTS---EEEEEEEESSS----TCCCEE---HHHH
T ss_pred cCC-------------------------------------------CCCcCCceEEEEEECCC----CcEEEeeeccccC
Confidence 100 011111 122333322 111111111 001
Q ss_pred CCccceEEEEEecCCCeEEEeeec---CeEEEEeecCCCCCCCCceeeeeccccccCCCccc---ccccccCCCcCCcee
Q 002264 762 DTSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL---MANDVAGVNLEEAVP 835 (945)
Q Consensus 762 ~~~~~v~~l~~s~dg~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~i~ 835 (945)
.....+..+.|+++++.++..-.+ ....+.-+ |..++.. ....-.+ --..-.
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~--------------------d~~tg~~~~~~~e~~~~--Wv~~~~ 238 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC--------------------DASTGETRVVLEETSDG--WVDVYD 238 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE--------------------EECTTTCEEEEEEESSS--SSSSSS
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEE--------------------ECCCCceeEEEEecCCc--ceeeec
Confidence 145567899999999955444332 33333322 2222111 0000000 111122
Q ss_pred EEeec-CCCceEEecC--CCe--EEEEeccCceEEEEecCCCCCeeE-EEeecCCCceEEEeecCc----eEEEEecccc
Q 002264 836 CIALS-KNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTF-LAFHPQDNNIIAIGTEDS----TIHIYNVRVD 905 (945)
Q Consensus 836 ~l~~s-~dg~~la~~s--d~~--i~iwd~~~~~~~~~~~~h~~~i~~-l~~s~~~~~~lasg~~dg----~v~vwd~~~~ 905 (945)
...|. +++..++..+ +|- |.+++..++.. ..+....-.|+. +.+++.++.+.+++..++ .|+.-++.++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 44554 6666555554 553 77778776664 455544555755 778884455666666543 5666666634
Q ss_pred eEEEEecCCCcceeEEEecCCcceeeee
Q 002264 906 EVKSKLKGHQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~ 933 (945)
..+..|....+.-..+.|||||++++-.
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 4556666444434689999999988754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.5e-06 Score=78.90 Aligned_cols=162 Identities=16% Similarity=0.181 Sum_probs=102.5
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.|.++-.+-+.+-.+.. +++|..||.+.+.+.+.-..+.. ++-..|.+. .+.+....++.+
T Consensus 87 ~~sep~p~~~~s~~~t~-V~~~~~dg~~~v~s~~~~~~~~~-----------------~i~~~~~~~-as~~~~~~~~~i 147 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNR-VCIGYADGSLAVFSTDKDLALMS-----------------RIPSIHSGS-ASRKICRHGNSI 147 (319)
T ss_pred ccCCCCCcccccccCCc-eEecCCCceEEEEechHHHhhhh-----------------hcccccccc-cccceeecccEE
Confidence 35544444444545554 89999999999999766222110 001112111 122222345555
Q ss_pred EEEEC-----CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCC
Q 002264 422 GVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (945)
Q Consensus 422 as~~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~ 494 (945)
.++.- -+..+.|+++-.+.+.. -..-...|.+++-.|..+. ++++|+.||.+-+|| ... .+...+..|+
T Consensus 148 ~s~~~g~~n~~d~~~a~~~~p~~t~~~---~~~~~~~v~~l~~hp~qq~-~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk 223 (319)
T KOG4714|consen 148 LSGGCGNWNAQDNFYANTLDPIKTLIP---SKKALDAVTALCSHPAQQH-LVCCGTDDGIVGLWDARNVAMPVSLLKAHK 223 (319)
T ss_pred ecCCcceEeeccceeeecccccccccc---cccccccchhhhCCccccc-EEEEecCCCeEEEEEcccccchHHHHHHhh
Confidence 44321 23456666654332221 1112234999999998776 788999999999999 444 3456678899
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.+++.+-|+|+ ++..|+++++||.+--||..+
T Consensus 224 ~~i~eV~FHpk-~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 224 AEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhheeccCC-CchheeEecCCCcEEEEcCCC
Confidence 99999999998 567899999999999998654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=86.05 Aligned_cols=211 Identities=10% Similarity=0.134 Sum_probs=144.6
Q ss_pred cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCeEEEE
Q 002264 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAW 523 (945)
Q Consensus 449 ~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw 523 (945)
-|...|+.+.-+.. + ++.+++.||.++.|..+. +.+..+..|-..|.+++.+. ++.++.+.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEE
Confidence 38888888776653 4 899999999999999333 23455677888888888765 6678888777 9999999
Q ss_pred EccCCCeeEEe--cCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCCCE
Q 002264 524 LYDTMGSRVDY--DAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNH 599 (945)
Q Consensus 524 d~~~~~~~~~~--~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 599 (945)
|+.+.....-+ ....+.+..+ .++ |-..+++.+. -.++.+.++|-.... ....+.+.+..++..+.+.+.+..
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 98875544222 2222222222 122 2222333322 247889999976543 444455555558999999999999
Q ss_pred EEEEECCCcEEEEECCC------CeeEEEe-------ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccc
Q 002264 600 FLAVGEDSQIKFWDMDN------VNILTST-------DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (945)
Q Consensus 600 l~~~~~dg~i~iwd~~~------~~~~~~~-------~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (945)
+++....|.|.-|.... .+....+ ..........++.|+|+|..+.+-+.|..|++++..++ .+.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999999873 1111111 11122345689999999999999999999999999988 4444
Q ss_pred cc
Q 002264 667 AV 668 (945)
Q Consensus 667 ~~ 668 (945)
.+
T Consensus 238 ei 239 (558)
T KOG0882|consen 238 EI 239 (558)
T ss_pred hh
Confidence 33
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.6e-05 Score=80.31 Aligned_cols=283 Identities=13% Similarity=0.081 Sum_probs=160.9
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
|...|.--+++..+++ ++.|+.-|.+++|+-..++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 4557777777888886 89999999999999777665431 1233456777888999999999
Q ss_pred EEECCCcEEEEEccCCccccccee--e-ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc-----eEEEecCCC
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQ--I-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~--~-~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~-----~~~~~~~~~ 494 (945)
.|+..|.|.++-+..+........ . ..|...|++++|++++. .+++|...|.|.+-..+.. ..+.+..-.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998877543222111 1 13778999999999999 8999999999987763331 122333345
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-CC-eEEEEEEcCC----CCEEEEEeecCCCCceEEE
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GH-WCTTMLYSAD----GSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~-~i~~~~~s~~----~~~l~~~~~~~d~~~~i~i 568 (945)
+.|..+... ++.+|++... .. .+++.+.......-... .+ .-...+|-|. .+-.+.++ ....++
T Consensus 171 s~IVQlD~~---q~~LLVStl~-r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTLT-RC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhhh-hh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 566666543 2233433332 22 23443322211100001 11 0122333332 23333443 334677
Q ss_pred EeCC-CCceeeEeccc-------------cC---cc-------eEEEEE----cCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 569 WNES-EGTIKRTYAGF-------------RK---KS-------NGVVQF----DTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 569 wd~~-~~~~~~~~~~~-------------~~---~~-------~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
|... .|+.+++..-. .. .. -..+.+ .-.+..+++-++-| |+|+|.++...+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8765 24433332210 00 00 000111 11122445555444 889998876655
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
.-.... ..|..|+. +|+-|++-..|+.+++..+.+..
T Consensus 320 l~se~~---~DI~dVs~--~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 320 LWSEGG---HDILDVSH--CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred EeecCC---CceeEEee--cCceEEEEecCCceeEEEeehhH
Confidence 544322 14555544 56677777778888888776653
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.011 Score=67.30 Aligned_cols=296 Identities=13% Similarity=0.105 Sum_probs=155.8
Q ss_pred CCCcEEEEEEeCC--CCe---EEEEEeCcCcEEEEEc-CCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 343 QGSTVISMDFHPS--HQT---LLLVGSSNGEITLWEL-AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 343 h~~~V~~v~fsp~--g~~---llasgs~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
-+.+|.|+.++|- ++. ++|+|..+..+.+--. .+...+....+. ...-...|.-..|-.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~---------------~~~iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS---------------GEIIPRSILLTTFEG 593 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC---------------CCccchheeeEEeec
Confidence 3578999999985 444 8999987766555432 333322210000 111234566666766
Q ss_pred CCCEEEEEECCCcEEEEEcc--CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 494 (945)
|..+|.++..||.+.-+.++ +|..-... ...-...++.=-.|+..+.. .+++++ |+-..+|..+++.+.+--.-.
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~K-k~~lGt~P~~Lr~f~sk~~t-~vfa~s-drP~viY~~n~kLv~spls~k 670 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINTGQLSDRK-KVTLGTQPISLRTFSSKSRT-AVFALS-DRPTVIYSSNGKLVYSPLSLK 670 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEcccceEcccc-ccccCCCCcEEEEEeeCCce-EEEEeC-CCCEEEEecCCcEEEeccchH
Confidence 78999999999998766554 44321111 11123456666777777664 455444 777777776666654322111
Q ss_pred CCEEEEE-eeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEEEEEeecC----------CC
Q 002264 495 APVYSIC-PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSK----------DG 562 (945)
Q Consensus 495 ~~v~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~----------d~ 562 (945)
.+..+| |+.+.-...++++ ..+.+++.-++.-+...... .-......+++.+....+.+.+... ..
T Consensus 671 -ev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~ 748 (1096)
T KOG1897|consen 671 -EVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYE 748 (1096)
T ss_pred -HhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcce
Confidence 122222 2211112234443 34566666655443332111 1223455666766444444333210 01
Q ss_pred CceEEEEeCCCCceeeEeccccCcc---eEEEEEcCC-CCEEEEEE----------CCCcEEEEECCCCeeEEEeecCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKS---NGVVQFDTT-QNHFLAVG----------EDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
-..++++|..+.+.....+...... +.++.|..| +.++++|. ..|.|.+|.+..+..+.....+.-
T Consensus 749 ~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v 828 (1096)
T KOG1897|consen 749 VSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV 828 (1096)
T ss_pred EEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee
Confidence 1246778877776655443332222 333457776 56777765 257888888877444433332222
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+.+.++..- +|+++|.- ...|++|+..+.
T Consensus 829 ~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~ 858 (1096)
T KOG1897|consen 829 KGAVYALVEF-NGKLLAGI--NQSVRLYEWTTE 858 (1096)
T ss_pred ccceeehhhh-CCeEEEec--CcEEEEEEcccc
Confidence 2234443322 57777654 457889888765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00013 Score=84.11 Aligned_cols=243 Identities=10% Similarity=0.072 Sum_probs=142.9
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
....|.++.|-.++..++.+..+|.|.+-|.++.... ....-...|.+++||||++ .++-.+.++++.+-+.+-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEeccc
Confidence 3468999999999999999999999999988775422 2334567899999999999 566666567776544322
Q ss_pred ceEEEecC-----CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 485 RKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 485 ~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.++..-.- ..+..-.+-|.... .=+-|+ .|.....+................=++++|--||.++++....
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKE---TQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cchhccccccccccccccceecccccc---eeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 22211110 11111222221110 011111 1111111110000000000111223578999999999885543
Q ss_pred CCCC-ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE---CCCcEEEEECCC---CeeEEEeecCCCCCCc
Q 002264 560 KDGD-SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN---VNILTSTDAEGGLPNL 632 (945)
Q Consensus 560 ~d~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~~v 632 (945)
...+ ..|++||.. |.+-..-... ...-.+++|-|.|..+++.. .|+.|.+|..+. |+....+ +....+|
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~--p~de~~v 292 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF--PLDEKEV 292 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC--cccccch
Confidence 3223 789999976 4433222221 22456789999999998854 567899998654 2222222 2223358
Q ss_pred cEEEEcCCCCEEEE---EECCCcEEEEECCCC
Q 002264 633 PRLRFSKEGNLLAV---TTADNGFKILANAIG 661 (945)
Q Consensus 633 ~~v~~sp~g~~l~~---~~~dg~i~iw~~~~~ 661 (945)
..++|+.++..||+ ......|++|-..+-
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecCe
Confidence 99999999999998 444455999988664
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-05 Score=86.41 Aligned_cols=181 Identities=15% Similarity=0.161 Sum_probs=127.0
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+.++|++++- + +++-|+.+|.|++.+....- .. ...|+.. .-+|.++++
T Consensus 39 ~D~is~~av~~--~-~~~~GtH~g~v~~~~~~~~~--~~-------------------~~~~s~~------~~~Gey~as 88 (846)
T KOG2066|consen 39 NDAISCCAVHD--K-FFALGTHRGAVYLTTCQGNP--KT-------------------NFDHSSS------ILEGEYVAS 88 (846)
T ss_pred hhHHHHHHhhc--c-eeeeccccceEEEEecCCcc--cc-------------------ccccccc------ccCCceEEE
Confidence 45788888874 3 69999999999999975432 10 1224333 568999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecC-----CCeeEEEEEeCCCcEEEEe---CCCceEEEecCCCC
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-----NKLLCVVTCGDDKLIKVWE---LSGRKLFNFEGHEA 495 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~~~l~s~s~d~~i~vwd---~~~~~~~~~~~~~~ 495 (945)
|+.||+|.|-.+.+++... ++ ....++.+++++|+ .+ .+++||.-| +.++. ...+....+....+
T Consensus 89 CS~DGkv~I~sl~~~~~~~---~~-df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG 161 (846)
T KOG2066|consen 89 CSDDGKVVIGSLFTDDEIT---QY-DFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG 161 (846)
T ss_pred ecCCCcEEEeeccCCccce---eE-ecCCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCcc
Confidence 9999999999998876554 22 35668999999998 34 689999888 77776 22222234666788
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC------eEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH------WCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+|.+++|. |.+++-++.+ -|++||..+.+.+..+..+.. .-..+.|.++.+.++.-+ .+|++.
T Consensus 162 ~I~~i~W~----g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~------d~v~i~ 230 (846)
T KOG2066|consen 162 PIHSIKWR----GNLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG------DSVKIC 230 (846)
T ss_pred ceEEEEec----CcEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC------CeEEEE
Confidence 99999984 3566665554 479999988777665554433 234577877776666543 357777
Q ss_pred eCC
Q 002264 570 NES 572 (945)
Q Consensus 570 d~~ 572 (945)
.++
T Consensus 231 ~I~ 233 (846)
T KOG2066|consen 231 SIK 233 (846)
T ss_pred EEe
Confidence 766
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00015 Score=80.54 Aligned_cols=204 Identities=12% Similarity=0.130 Sum_probs=132.0
Q ss_pred EEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCcc-EEEEEEcCCCCEEEEEECCCc
Q 002264 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVAFTKHL 429 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~s~~g~~las~~~dg~ 429 (945)
+|++.+. .+|.|+.+|.|.+.+- +-... +-+..+... |..+-.-.+..+|++.+.|+.
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~--s~~~~------------------~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNS--SFQLI------------------RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecc--cceee------------------ehheecchhhhhHhhcccCceEEEEEeecCC
Confidence 3567776 5999999999887763 22110 113345445 333333334467888777654
Q ss_pred -----EEEEEccCCcc---cccc---eee----ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe---C--CCceEEE
Q 002264 430 -----IQLYSYAGSND---LRQH---SQI----DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---L--SGRKLFN 489 (945)
Q Consensus 430 -----i~vwd~~~~~~---~~~~---~~~----~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd---~--~~~~~~~ 489 (945)
++||+++.-+. .... ..+ .....++.+++.+.+-+ .+|.|-.+|.|..+. . .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 89999874321 1111 111 12356789999999977 889999999998885 1 2222222
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
......+|+.+++... +..++....-..|.+|.+....+ ...+..++....|.++++....+++++ ...+.+
T Consensus 167 ~~~~~~pITgL~~~~d--~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSD--GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEecC--CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 3334678999998654 44434444456789999885552 334677788899999988777677765 668999
Q ss_pred EeCCCCceeeEec-ccc
Q 002264 569 WNESEGTIKRTYA-GFR 584 (945)
Q Consensus 569 wd~~~~~~~~~~~-~~~ 584 (945)
||.....+...|. ++.
T Consensus 240 Y~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 240 YDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EcCCCcceeeeecCCCe
Confidence 9998777777776 544
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00055 Score=69.83 Aligned_cols=268 Identities=15% Similarity=0.185 Sum_probs=157.7
Q ss_pred CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcc
Q 002264 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF----------TKHLIQLYSYA 436 (945)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~----------~dg~i~vwd~~ 436 (945)
+.|.|+|.++++.+-. + ..+-.-.+..|||++.+.+++ ..-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGm-------------------i--~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGM-------------------I--DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEE-------------------E--EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEE-------------------e--ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 4789999888776531 1 112333467899999988753 23459999998
Q ss_pred CCcccccceeeccccc----cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEE
Q 002264 437 GSNDLRQHSQIDAHVG----AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI 511 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~~----~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 511 (945)
+-.....+..-.+|.. ....++++.||+.+++.-.+.-.+|.|-| ..++.+..+... + +.. ..|.++ ..+
T Consensus 76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~--iyP~~~-~~F 150 (342)
T PF06433_consen 76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWL--IYPSGN-RGF 150 (342)
T ss_dssp TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEE--EEEEET-TEE
T ss_pred cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEE--EEecCC-Cce
Confidence 8654432211111111 23346888999976666667777888999 556655555421 1 222 235544 458
Q ss_pred EEEEcCCeEEEEEccCCCeeEE-----ecCCCCe-EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee--eEeccc
Q 002264 512 FSTAIDGKIKAWLYDTMGSRVD-----YDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK--RTYAGF 583 (945)
Q Consensus 512 ~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~-i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~--~~~~~~ 583 (945)
.+.|.||++....++....... +.....+ +..-.+...+..++..+. +|.|+-.|+...... ..+...
T Consensus 151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEEEEEESS
T ss_pred EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCcccccCccccc
Confidence 8999999999998885443321 1111222 223344444544444444 788888887655422 222110
Q ss_pred ---------cCcceEEEEEcCCCCEEEEEE---CCC-------cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC-E
Q 002264 584 ---------RKKSNGVVQFDTTQNHFLAVG---EDS-------QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-L 643 (945)
Q Consensus 584 ---------~~~~~~~~~~~~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~ 643 (945)
..+....+++++..+.|++.- .+| .|.++|+.+++.+..+.... ++.+++.+.+.+ .
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPL 303 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-E
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcE
Confidence 011233478887777766632 222 38889999999999998743 578999999766 5
Q ss_pred EEEEE-CCCcEEEEECCCCccccccc
Q 002264 644 LAVTT-ADNGFKILANAIGLRSLRAV 668 (945)
Q Consensus 644 l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (945)
|++.+ .++.+.+||..++ +.++..
T Consensus 304 L~~~~~~~~~l~v~D~~tG-k~~~~~ 328 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAATG-KLVRSI 328 (342)
T ss_dssp EEEEETTTTEEEEEETTT---EEEEE
T ss_pred EEEEcCCCCeEEEEeCcCC-cEEeeh
Confidence 54444 4789999999998 444443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00023 Score=79.11 Aligned_cols=200 Identities=16% Similarity=0.215 Sum_probs=127.8
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-----cEEEEe-C---C
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-L---S 483 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-----~i~vwd-~---~ 483 (945)
+|++.+..+|.|+.+|.|.+++-. - +....+..+...+...-|.-+++. +|++.+.|+ .+++|+ . .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~--~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--F--QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--c--eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 467889999999999988887632 1 221245566666444445555544 777777665 489999 2 1
Q ss_pred Cc---eE--EEecC-----CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC---CCeeEEe-cCCCCeEEEEEEcCC
Q 002264 484 GR---KL--FNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDY-DAPGHWCTTMLYSAD 549 (945)
Q Consensus 484 ~~---~~--~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~-~~~~~~i~~~~~s~~ 549 (945)
+. ++ ..+.. ...++.+++++.+ -..++.|-.+|.|.++.-+- ......+ .....+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 22 22 12222 2456788888764 47899999999999884321 1122222 233458999999999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (945)
++.++.+.. ...|.+|.+....+......+++....|..+++....+++++. ..+++|+.....+...+.
T Consensus 183 ~~s~lFv~T----t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT----TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe----cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 988332222 5678999988544344433444557888888887665666654 469999988666555554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.1e-05 Score=74.83 Aligned_cols=247 Identities=13% Similarity=0.135 Sum_probs=136.7
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
....|..-|..++|||...-|+..++.+.+|.|.|+.+...+.. +..| ..+.+++|.-|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDE 247 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCC
Confidence 34458899999999999877889999999999999998766532 3345 789999999875
Q ss_pred C-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEe------cCCCeeEEEEEeCCCcEEEEeCC---CceEE
Q 002264 419 N-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------YPNKLLCVVTCGDDKLIKVWELS---GRKLF 488 (945)
Q Consensus 419 ~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~~~~~~~l~s~s~d~~i~vwd~~---~~~~~ 488 (945)
. +|..|..+|.|.|||+...+.......-.-...+|..++.- +.|. +++..+. .+..|+.. +....
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~p~ 323 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECLPC 323 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCCCc
Confidence 4 66777789999999998655432211111123345444433 2333 3443332 24456611 11111
Q ss_pred Eec-CCCCCEEEEEeeecCCccEEEEEEcCC------eEEE-EEccCCCeeEEe-cCC-CC------eEEEEEEcCCCCE
Q 002264 489 NFE-GHEAPVYSICPHHKENIQFIFSTAIDG------KIKA-WLYDTMGSRVDY-DAP-GH------WCTTMLYSADGSR 552 (945)
Q Consensus 489 ~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~i-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~~~~~ 552 (945)
.+. +..+...++..++..+ ..|++.-.+. .+-. -|-..+..+... ..+ +. .-..+.-.++.++
T Consensus 324 vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 324 VLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred ccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence 111 1233444444444322 3343332210 0000 011111111100 000 10 1112223456666
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEE-cCCCCEEEEEECCCcEEEEECC
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
++..+. ..+.+.+||..+++.++++.... ++..++. .-+++-++..=.|..++||..+
T Consensus 403 iv~~gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 403 IVVVGD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred EEEecC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 666553 47789999999999999887652 4555443 3344444444456678887654
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-06 Score=51.18 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhh
Q 002264 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (945)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (945)
+++++||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00041 Score=76.61 Aligned_cols=286 Identities=12% Similarity=0.054 Sum_probs=152.8
Q ss_pred CCeEEEEEeCcCcEEEEEcCCCCccccccc------ccccccccCcccccccc-cC--CCccEEEEEEc-----CCCCEE
Q 002264 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQASIF-KD--VPISVSRVAWS-----PDGNYV 421 (945)
Q Consensus 356 g~~llasgs~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~--h~~~V~~i~~s-----~~g~~l 421 (945)
.-|.+.||+..|.|+|+-+.+++.+..-++ .-|-....++....... .+ ..+......+| .||+||
T Consensus 65 eyy~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~ 144 (635)
T PRK02888 65 EYYGFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYL 144 (635)
T ss_pred cEEEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEE
Confidence 336678899999999999999888754221 22322222111110000 00 01112222333 278888
Q ss_pred EEEEC-CCcEEEEEccCCcccccce--ee-ccc---------cccEEE-----EEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 422 GVAFT-KHLIQLYSYAGSNDLRQHS--QI-DAH---------VGAVND-----LAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 422 as~~~-dg~i~vwd~~~~~~~~~~~--~~-~~h---------~~~v~~-----l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
..-.. +..|-..+++.-++-+.+. .. ..| ++.|.+ +-++|||+. +..+.-..+.+.+.| .
T Consensus 145 findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~-l~~~~ey~~~vSvID~e 223 (635)
T PRK02888 145 FINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD-LDDPKKYRSLFTAVDAE 223 (635)
T ss_pred EEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCE-eecccceeEEEEEEECc
Confidence 87654 4445555554332211100 00 012 222221 224556652 222333345666667 5
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
+.+...++.--. ....+.+++ +|.++++.+.+ +++..-+.........+.... + -.+.++|++....
T Consensus 224 tmeV~~qV~Vdg-npd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V~-- 294 (635)
T PRK02888 224 TMEVAWQVMVDG-NLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTIG-- 294 (635)
T ss_pred cceEEEEEEeCC-CcccceECC--CCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEEC--
Confidence 444444433211 223445544 55677666522 122222221111111111110 0 1234578877653
Q ss_pred cCCCCceEEEEeCCC-----CceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCee------------E
Q 002264 559 SKDGDSFLVEWNESE-----GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI------------L 620 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------~ 620 (945)
++.|.+.|.++ .+.+..+.... ....+.++|||+++++++ .++++.|.|+.+.+. +
T Consensus 295 ----gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 295 ----GSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred ----CCEEEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 56799999988 45555555433 467799999999998877 689999999987552 3
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
...... . .-...+|.++|....+..-|..|..|++.+
T Consensus 369 aevevG--l-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELG--L-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccC--C-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333331 1 235788999999888888899999999975
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0016 Score=73.68 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=69.6
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCC------eE--EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH------WC--TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i--~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
..++.++.++.+...|..+++....+..... .+ ..+.+. ++..++.++. ++.|+-+|.++|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 4577778889999999988888776654332 00 011111 2245655553 889999999999988776
Q ss_pred ccccCc-----ceEEEEEcCCCCEEEEEE---------CCCcEEEEECCCCeeEEEeec
Q 002264 581 AGFRKK-----SNGVVQFDTTQNHFLAVG---------EDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 581 ~~~~~~-----~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 625 (945)
...... ......+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 543220 01111222 24555554 367899999999998887755
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.7e-05 Score=84.63 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=136.3
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
.++-|+....+..+| .+++..+...-..+.|.-++. +++++.+|...|+|.+-|.++.+.+.++..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 567788788888899 555555544444445666653 558999999999999999999999999999999887654
Q ss_pred EcCCCCEEEEEeecCC-----CCceEEEEeCCCCceeeEeccccCcceEEEEEcCC-CCEEEEEECCCcEEEEECCC-Ce
Q 002264 546 YSADGSRLFSCGTSKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDN-VN 618 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-~~ 618 (945)
-.|+.|++||.+.. -|..|.+||++..+.+..+.-+.+ ...+.|.|. ...+++++..|...+-|..+ +.
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeeccccccCC
Confidence 56889999987432 256789999998877766655544 234677775 36788888999999998332 11
Q ss_pred e-EEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 619 I-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 619 ~-~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
+ ......+...+.+..+.++++|..+|.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 1 222222222335899999999999999999999999984
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0029 Score=66.01 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=108.6
Q ss_pred EEEcCCCCEEEEEEC-CC--cEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCce
Q 002264 412 VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (945)
Q Consensus 412 i~~s~~g~~las~~~-dg--~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~ 486 (945)
=+|.+||+.|+.++. || .+.+.|+.+++..+ |..+. .......++++++ .++-......|+--| .+.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 367889977666554 44 57777888876554 33322 2222466778887 444444456788888 55554
Q ss_pred EEEecCCCCCEEEEEeeecCCccEEEEEEc----------------------CCeEEEEEccCCCeeEEecCCCCeEEEE
Q 002264 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAI----------------------DGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (945)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 544 (945)
...+......+-...|..+.++..++..-. ...|..-|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 444454555555566665656665543321 1234455666655544443 44577889
Q ss_pred EEcCCCCEEEEEeecCCCC---ceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEE-----CCCcEEEEECC
Q 002264 545 LYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVG-----EDSQIKFWDMD 615 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~~---~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~ 615 (945)
.|+|....++.-+..+.-+ ..|.+.+.. +...+.+..+. ...+.-=.|.|+|..+..-+ .+..|.-+|..
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 9999665555443322222 234444433 33333333222 22344456899998776643 24457778888
Q ss_pred CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
+++.......+ ....+..++||++++-=+.|
T Consensus 273 t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 88765444332 34566778899988755544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0077 Score=62.92 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=133.7
Q ss_pred EEeCCCCeEEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccEEEEEEcCCCCEEEEEECC
Q 002264 351 DFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTK 427 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~s~~g~~las~~~d 427 (945)
+|.+||+.||+++..|| .+.+-|+.+++... +..+. .......++|+++.++-....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 57899998888887777 45555777776542 22221 112246677888888776666
Q ss_pred CcEEEEEccCCcccccceeeccccccEEEEEEe--cCCCeeEEEEEe----------------------CCCcEEEEe-C
Q 002264 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCG----------------------DDKLIKVWE-L 482 (945)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~~~l~s~s----------------------~d~~i~vwd-~ 482 (945)
..++-.|+++.+... .+......+-...|. .|+. .++-.- ....|.--| .
T Consensus 102 ~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 788888998876432 333445555455664 3444 332211 011222334 3
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEc---CC-eEEEEEccCCCeeEE-ec--CCCCeEEEEEEcCCCCEEEE
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DG-KIKAWLYDTMGSRVD-YD--APGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg-~i~iwd~~~~~~~~~-~~--~~~~~i~~~~~s~~~~~l~~ 555 (945)
+|+. ..+..-...+..+.|+|.. ...|+.|-+ +. .-|||-+++...... +. .....+..=-|.|||..+..
T Consensus 177 tG~~-~~v~~~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGER-KVVFEDTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--E-EEEEEESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCce-eEEEecCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 3333 3333344556677788763 345555432 22 136787665433221 11 12335666679999998876
Q ss_pred Eee-cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC----------------CcEEEEECCCCe
Q 002264 556 CGT-SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVN 618 (945)
Q Consensus 556 ~~~-~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~ 618 (945)
.+. .+..+..|.-+|+.+++........ ...-.-.+++|++++-=|.| .-|+++++..+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 554 2233557888888887654433221 22335567888877653332 246778888776
Q ss_pred eEEEeecC-------C-CCCCccEEEEcCCCCEEEEEEC-CCcEEEEEC
Q 002264 619 ILTSTDAE-------G-GLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (945)
Q Consensus 619 ~~~~~~~~-------~-~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~ 658 (945)
........ + ....=..+.|+|||++++..++ .|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 54322211 0 0001246899999998876665 566666544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.5e-05 Score=82.23 Aligned_cols=185 Identities=16% Similarity=0.105 Sum_probs=126.8
Q ss_pred cccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe
Q 002264 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS 530 (945)
Q Consensus 451 ~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 530 (945)
...++|++++ ++ .|+-|+.+|.|++.+..|.. .+...|+.. +.+|.++++|+.||+|.|-.+-+...
T Consensus 39 ~D~is~~av~--~~--~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DK--FFALGTHRGAVYLTTCQGNP-KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cc--eeeeccccceEEEEecCCcc-ccccccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 4457777776 44 78999999999999977766 444445443 34789999999999999998888777
Q ss_pred eEEecCCCCeEEEEEEcCC-----CCEEEEEeecCCCCceEEEEeCCCC-ceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 531 RVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~~~d~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
...+..+ .++.+++++|+ .+.++++|. .| +.++.-+-. ...........+.|.++.|. |++++-++
T Consensus 106 ~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~----ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 106 ITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGM----AG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred ceeEecC-CcceeEEeccchhhhhhhheeecCc----ce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 6665544 46899999998 567888874 44 777653321 11111112223478888886 56666666
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCC----CCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGL----PNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.+| |++||+.+++.+..++.+... .--..+.|.++. .|+.|-.| +|+|..++
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 555 899999999988877655421 012457777654 55666555 89998887
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-06 Score=63.47 Aligned_cols=52 Identities=37% Similarity=0.544 Sum_probs=42.1
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHhHhhccCCH
Q 002264 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (945)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~ 90 (945)
+..++++|+.|+|+.|++.+.......... ...+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~-~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLER-NSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhcc-CCCchhHHHHHHHHHHHHcCCc
Confidence 678999999999999999998874332222 2359999999999999998764
|
Alpha-helical motif of unknown function. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0028 Score=68.37 Aligned_cols=95 Identities=18% Similarity=0.363 Sum_probs=72.5
Q ss_pred cCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEE
Q 002264 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~ 908 (945)
....+.+++++|+.+.++.|. ||.|.+||...+....+ ...-.++.++|+| +|.++++|+..|.+.+||+.-+...
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence 577899999999999999998 99999999876543322 2345589999999 9999999999999999998744221
Q ss_pred EE----------------ecCCCcceeEEEecCCc
Q 002264 909 SK----------------LKGHQKRITGLAFSTSL 927 (945)
Q Consensus 909 ~~----------------l~~h~~~V~~l~~s~dg 927 (945)
.+ .-.+......+.|++..
T Consensus 335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 11 12345567778888543
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.2e-06 Score=53.44 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhhCCC
Q 002264 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (945)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (945)
.++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999975
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0001 Score=82.13 Aligned_cols=181 Identities=8% Similarity=0.080 Sum_probs=127.2
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
++..++.|+....+..+|+.+.+..+ ...-..+.|+-|+. +++ ++.+|...|+|.+-| .+.+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45667778887888999998876554 22223334555554 456 889999999999999 88899999999999
Q ss_pred CEEEEEeeecCCccEEEEEEc---------CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC-CEEEEEeecCCCCce
Q 002264 496 PVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSF 565 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~ 565 (945)
.|..+.+ .|+.|+++|. |.-|++||++....+..+..+.++ .-+.|.|.- ..+++++. .|.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9998875 4468888875 445789999887666554444432 345566642 34555553 677
Q ss_pred EEEEeC---CCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 566 LVEWNE---SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 566 i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 613 (945)
..+-|. .+...-.......+..+..+.++++++.++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888883 332211122222232488899999999999999999999997
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0078 Score=67.11 Aligned_cols=249 Identities=12% Similarity=0.073 Sum_probs=134.5
Q ss_pred cEEEEEEeCCCCeEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.+...++||||++++++-+..| .+++.|+.+|+.+.. .+.. .....+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d------------------~i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD------------------GIEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE------------------EEEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC------------------cccc--cccceEEEeCCCCEE
Confidence 4457889999997665545444 699999999976531 0111 112239999999987
Q ss_pred EEEECCC-----------cEEEEEccCCcccccceeecccccc--EEEEEEecCCCeeEEEEEeCCC---cEEEEe-CCC
Q 002264 422 GVAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSG 484 (945)
Q Consensus 422 as~~~dg-----------~i~vwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~~~~~l~s~s~d~---~i~vwd-~~~ 484 (945)
+....+. .|+.|++.++..-. ...+...... ...+..++|++. ++++..... .+.+.+ ..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~-l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRY-LFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSE-EEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccE-EEEEEEccccCCeEEEEecccc
Confidence 7665433 37777776653321 1133333332 678899999996 333333333 466777 332
Q ss_pred ----ceEEEecCCCCCEEEEEeeecCCccEEEEEE---cCCeEEEEEccCCCe---eEEecCCCC--eEEEEEEcCCCCE
Q 002264 485 ----RKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAPGH--WCTTMLYSADGSR 552 (945)
Q Consensus 485 ----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~~~~s~~~~~ 552 (945)
.....+......+....-+. ++.+++... ..+.|...++..... ...+..+.. .+..+. ..+++
T Consensus 263 ~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~ 338 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDY 338 (414)
T ss_dssp TTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTE
T ss_pred CCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCE
Confidence 23444443333343332222 223444332 335677777777653 223334433 344444 44556
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE--E--CCCcEEEEECCCCeeEE
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--G--EDSQIKFWDMDNVNILT 621 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~--~dg~i~iwd~~~~~~~~ 621 (945)
|+.... .++...|+++++..+.............+..+...++++.+... + .-+.++.||+.+++...
T Consensus 339 Lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 339 LVLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 665543 34577899999984444444444333345555555555554432 2 34578888988887543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0015 Score=71.47 Aligned_cols=224 Identities=12% Similarity=0.099 Sum_probs=120.2
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+.........++++|+|++++++ .||.-.|+..... +. ...+.-...+|.+.++ +++-...++|.++.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 33345567899999999999995 5677788873221 21 1334566788998554 66666688999976
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.++.....+.. ...+..+- + |.+|...+ ++.|.+||+.++..+..+... .|..+.|+++|.+++..+
T Consensus 96 n~~~~~~k~i~~-~~~~~~If--~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIF--G---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcC-CcccceEE--c---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 54443233332 12344442 1 45666555 448999999999888887755 388999999999999887
Q ss_pred CCCceEEEEeCCCC-----------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 561 DGDSFLVEWNESEG-----------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 561 d~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
+..+++++.... .....+... ...|.+.+|..+ .++..+.. .|+. +-.|+.-......
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--- 232 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--- 232 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S---
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC---
Confidence 556777765433 011122111 125667777755 45444444 6665 3344432222221
Q ss_pred CCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.++.=+.+.+..+.+.....|+.+..+.+..
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 1567778888778888888999998888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.048 Score=62.01 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=67.0
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCC-eEE----------EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~----------~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++. ++.+.-+|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 4667777788888888888888876654321 111 1122 1234555543 789999999999988
Q ss_pred eEeccccCcceEEEEEcC--CCCEEEEEEC------CCcEEEEECCCCeeEEEeec
Q 002264 578 RTYAGFRKKSNGVVQFDT--TQNHFLAVGE------DSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 625 (945)
-.+.......-..+.-+| .+..++++.. +|.|+.+|.++|+.+-.+..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 765432110000011111 1335555542 68999999999998877644
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.3e-06 Score=89.86 Aligned_cols=205 Identities=13% Similarity=0.195 Sum_probs=132.9
Q ss_pred CCcEEEEEEeCCCC-eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEE
Q 002264 344 GSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (945)
Q Consensus 344 ~~~V~~v~fsp~g~-~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~l 421 (945)
...+.|++++.+.+ -++++|..+|.|.+-.+....-- -.....+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 44788888776544 58999999999999887543211 0123567888999999999 67778
Q ss_pred EEEE----CCCcEEEEEccCCccc-ccceeecc-ccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCC
Q 002264 422 GVAF----TKHLIQLYSYAGSNDL-RQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA 495 (945)
Q Consensus 422 as~~----~dg~i~vwd~~~~~~~-~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 495 (945)
|.|- .|..+.|||+.++-.. +....+.+ -.....+++|..+.+ .+.+|...+.+.++|....+...-.-.+.
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnTk 196 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNTK 196 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhhh
Confidence 8773 3567999999886211 11112222 344566889998777 78889888899999943333222222344
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEE-ccCCCeeEEecCCC-----CeEEEEEEcCCCCE-EEEEeecCCCCceEEE
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAPG-----HWCTTMLYSADGSR-LFSCGTSKDGDSFLVE 568 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~-l~~~~~~~d~~~~i~i 568 (945)
.+..+.+.|-. +.++++-. ||.|.+|| ....+.......+. ..+..++|+|...- +++... ..+.|++
T Consensus 197 ~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrl 271 (783)
T KOG1008|consen 197 YVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRL 271 (783)
T ss_pred hcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEE
Confidence 56666666632 34665544 99999999 44333332222221 25889999996543 444443 3778999
Q ss_pred EeCC
Q 002264 569 WNES 572 (945)
Q Consensus 569 wd~~ 572 (945)
+|+.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 9975
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0036 Score=67.56 Aligned_cols=241 Identities=12% Similarity=0.141 Sum_probs=135.8
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccc----------------------------------------cceee
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR----------------------------------------QHSQI 447 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~----------------------------------------~~~~~ 447 (945)
.|+++.|+++..-|++|...|.|.||.+...+... ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999999764321110 11123
Q ss_pred ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc-eEEE--ecC------CCCCEEEEEee---ecCCc---cEEE
Q 002264 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-KLFN--FEG------HEAPVYSICPH---HKENI---QFIF 512 (945)
Q Consensus 448 ~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~-~~~~--~~~------~~~~v~~~~~~---~~~~~---~~l~ 512 (945)
....++|++++.|.-| +++.|..+|.+.|.|..|- .+.. +.. ....++++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3446889999998666 7999999999999996554 3333 222 23457778775 23333 5788
Q ss_pred EEEcCCeEEEEEccC-CCeeE------EecCCCCeEEEEE-EcCC---------------------CCEEEEEeecCCCC
Q 002264 513 STAIDGKIKAWLYDT-MGSRV------DYDAPGHWCTTML-YSAD---------------------GSRLFSCGTSKDGD 563 (945)
Q Consensus 513 s~~~dg~i~iwd~~~-~~~~~------~~~~~~~~i~~~~-~s~~---------------------~~~l~~~~~~~d~~ 563 (945)
+|...|.+.+|.+.- ....+ ....+...+..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 22111 1112334444443 3221 12455554 6
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEc-----CCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC--CCCccEEE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-----TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLR 636 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 636 (945)
..++++...+.+...+.... ......+.+- ..+..|++-..+|.|++|.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 78999999887766555422 1122333442 3466788888999999999999988888776421 12356677
Q ss_pred EcCCCCEEEEEECCCcEEEEEC
Q 002264 637 FSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
++++|..++..+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 88888877766543 4444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0048 Score=66.60 Aligned_cols=251 Identities=14% Similarity=0.177 Sum_probs=130.9
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCccc------cc------------cccccccccc------Cccccccc
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------SK------------PFKIWDMAAC------SLPFQASI 401 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~------~~~~~~~~ 401 (945)
.|+.+.|+++... |++|...|.|.||.+...+... .. +-++-|+..- ..-....+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999775 8899999999999876543221 00 1112222210 01112234
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeecc------ccccEEEEEEec-----CC-CeeEEE
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~-----~~-~~~~l~ 469 (945)
+....++|++++.| |=-++|.|..+|.+.|.|+++...+.. ..+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999998 556999999999999999977654432 12222 345688898872 22 225788
Q ss_pred EEeCCCcEEEEe-C-C--CceE----EEecCCCCCEEEEEeeecCCc-------------------cEEEEEEcCCeEEE
Q 002264 470 TCGDDKLIKVWE-L-S--GRKL----FNFEGHEAPVYSICPHHKENI-------------------QFIFSTAIDGKIKA 522 (945)
Q Consensus 470 s~s~d~~i~vwd-~-~--~~~~----~~~~~~~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i 522 (945)
.|...|.+.+|. . . +.-. .....+.++|..+..-....| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 999999999997 3 2 2211 122246677766653211111 12444556788999
Q ss_pred EEccCCCeeEEecCCCCeEEEEEEc-----CCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC---cceEEEEEc
Q 002264 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~ 594 (945)
+...+.+..............+.+- ..+..|++.. .+|.+++|.+..-+.+..+..... ..+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655444222233344442 2444555555 389999999998887776654321 112334556
Q ss_pred CCCCEEEEE
Q 002264 595 TTQNHFLAV 603 (945)
Q Consensus 595 ~~~~~l~~~ 603 (945)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666544443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0054 Score=69.41 Aligned_cols=272 Identities=14% Similarity=0.123 Sum_probs=153.3
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE--EEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS--RVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
+..++.++.|.-.|..+|+.+ |........ ..+...+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~-------W~~~~~~~~------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVL-------WRYDPKLPA------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhh-------ceeCCCCCc------cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 566777899999999999876 322111000 00000010 01111 236777888899999999999
Q ss_pred Ccccccceeecccc---ccEE-EEEEecCCCeeEEEEEe---------CCCcEEEEe-CCCceEEEecCCCCC-------
Q 002264 438 SNDLRQHSQIDAHV---GAVN-DLAFAYPNKLLCVVTCG---------DDKLIKVWE-LSGRKLFNFEGHEAP------- 496 (945)
Q Consensus 438 ~~~~~~~~~~~~h~---~~v~-~l~~s~~~~~~~l~s~s---------~d~~i~vwd-~~~~~~~~~~~~~~~------- 496 (945)
|+.+-... ...+. ..+. +..+. + . .++.++ .++.+..+| .+|+.+..+......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-K-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-C-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 98664221 11110 0011 11222 2 2 333443 467889999 889888766532110
Q ss_pred -------------EE-EEEeeecCCccEEEEEEcCC------------------eEEEEEccCCCeeEEecCCCCeEE--
Q 002264 497 -------------VY-SICPHHKENIQFIFSTAIDG------------------KIKAWLYDTMGSRVDYDAPGHWCT-- 542 (945)
Q Consensus 497 -------------v~-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~-- 542 (945)
+. +.++.+ .+..++.++.++ .|.-+|..+++....+........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 10 112211 235677776555 788899999998887653221110
Q ss_pred ----EEEEc----CCCC---EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE--------
Q 002264 543 ----TMLYS----ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-------- 603 (945)
Q Consensus 543 ----~~~~s----~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 603 (945)
...+. -++. .+++++ .++.++.+|..+|+.+-...... ..++.+| ..++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~----~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAP----KNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEEC----CCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEccccccccC
Confidence 00111 1333 344444 37889999999999887654321 1123333 333332
Q ss_pred ----------ECCCcEEEEECCCCeeEEEeecCCCC------CCc--cEEEEcCCCCEEEEEECCCcEEEEECCCCccc
Q 002264 604 ----------GEDSQIKFWDMDNVNILTSTDAEGGL------PNL--PRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (945)
Q Consensus 604 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v--~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~ 664 (945)
..+|.+.-.|+.+|+.+-........ .+. ..++. .+..+++++.||.++.+|..+++..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCcee
Confidence 24678999999999988777654110 011 11222 5678889999999999999999543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=78.76 Aligned_cols=79 Identities=27% Similarity=0.393 Sum_probs=65.5
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
+..+.....|.|++++|+... |+.|..||+|++||...+... +..+.-.++.++|+|+
T Consensus 253 vtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~---------------------~~ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 253 VTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTL---------------------LAKAEFIPTLIAWHPD 310 (545)
T ss_pred EEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeee---------------------eeeecccceEEEEcCC
Confidence 344668999999999999995 899999999999998766432 1224456789999999
Q ss_pred CCEEEEEECCCcEEEEEccCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGS 438 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~ 438 (945)
|..+++|+..|.+.+||+.-+
T Consensus 311 gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 311 GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CcEEEEEcCCceEEEEEeecC
Confidence 999999999999999998643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0031 Score=62.91 Aligned_cols=190 Identities=12% Similarity=0.124 Sum_probs=110.3
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
..++..++|.|+.+.|+|+....+.|...+. +|+.+... .+.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i-----------------~l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRI-----------------PLDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEE-----------------E-SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEE-----------------eCCC-CCCceeEEEECCCEEEEE
Confidence 4479999999998878888888899988886 46665321 1333 356888999888888777
Q ss_pred EECCCcEEEEEccCCcc-c--ccce--ee---ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCC----CceEEEe-
Q 002264 424 AFTKHLIQLYSYAGSND-L--RQHS--QI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----GRKLFNF- 490 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~-~--~~~~--~~---~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~----~~~~~~~- 490 (945)
.-.++.+.++++..... + .... .+ ..++..+-.++|.+.++ .|+.+-+..-..++... +..+...
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~--~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN--RLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT--EEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC--EEEEEeCCCChhhEEEccccCccceeecc
Confidence 66689999998844321 1 1101 11 13556799999999988 44555556666666621 2222111
Q ss_pred -------cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC---------CeEEEEEEcCCCCEEE
Q 002264 491 -------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLF 554 (945)
Q Consensus 491 -------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~ 554 (945)
......+.+++++|. .+++++....+..|..+| ..++....+.... .+.-.|+|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 123345788899886 457888888889999998 5555555444433 2567899999997666
Q ss_pred EE
Q 002264 555 SC 556 (945)
Q Consensus 555 ~~ 556 (945)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 54
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0018 Score=70.66 Aligned_cols=204 Identities=15% Similarity=0.096 Sum_probs=117.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCc---CcEEEEEcCCCCcccccccccccccccCccccccccc
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (945)
+|-.+........+..-...+..-+|+|+++.+....-.. ..+.++++.+++...... +
T Consensus 175 l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~- 236 (425)
T COG0823 175 LALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------F- 236 (425)
T ss_pred EEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------c-
Confidence 4444433222333333566888899999998644442222 359999999887543211 2
Q ss_pred CCCccEEEEEEcCCCCEEEEEE-CCCc--EEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAF-TKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~-~dg~--i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.-...+|||||+.||.+. .||. |.++|+.++...+ +..-.+.-+.-.|+|||+. ++++.+..|.-.||
T Consensus 237 --~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~ 309 (425)
T COG0823 237 --NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIY 309 (425)
T ss_pred --CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceE
Confidence 22334568999999887654 4555 6666777765322 3333333346789999997 34445556654555
Q ss_pred --eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC-Ce--EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 481 --d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+..+.....+......-..-.|+| ||++++..+.. |. |.+.|+.++.....+ ..........+.++++.+..
T Consensus 310 ~~~~~g~~~~riT~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 310 LYDLEGSQVTRLTFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EECCCCCceeEeeccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEE
Confidence 466665555543333222444544 66777776643 44 566666555542222 22223345668888888877
Q ss_pred Eee
Q 002264 556 CGT 558 (945)
Q Consensus 556 ~~~ 558 (945)
.+.
T Consensus 387 ~s~ 389 (425)
T COG0823 387 SSG 389 (425)
T ss_pred ecc
Confidence 653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0042 Score=67.97 Aligned_cols=220 Identities=12% Similarity=0.143 Sum_probs=108.8
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
..-.+..+.++|+|++ +++++ ||.-.|+.....+.. ..+.-...+|++.++ +|
T Consensus 31 ~~~~p~~ls~npngr~-v~V~g-~geY~iyt~~~~r~k------------------------~~G~g~~~vw~~~n~-yA 83 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRF-VLVCG-DGEYEIYTALAWRNK------------------------AFGSGLSFVWSSRNR-YA 83 (443)
T ss_dssp -SS--SEEEE-TTSSE-EEEEE-TTEEEEEETTTTEEE------------------------EEEE-SEEEE-TSSE-EE
T ss_pred CCcCCeeEEECCCCCE-EEEEc-CCEEEEEEccCCccc------------------------ccCceeEEEEecCcc-EE
Confidence 5557899999999996 55544 788888884332211 124455688998555 66
Q ss_pred EEECCCcEEEE-EccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 423 VAFTKHLIQLY-SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 423 s~~~dg~i~vw-d~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
+-...++|.++ +++. +..+.+ .+.. .+..+-. |. +|...+ ++.|.+|| .+++.+.++... +|..+
T Consensus 84 v~~~~~~I~I~kn~~~-~~~k~i-~~~~---~~~~If~---G~--LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKN-EVVKSI-KLPF---SVEKIFG---GN--LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp EE-TTS-EEEEETTEE--TT------SS----EEEEE----SS--SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEE
T ss_pred EEECCCeEEEEEcCcc-ccceEE-cCCc---ccceEEc---Cc--EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEE
Confidence 66668889996 3332 222211 1111 2333322 76 555555 44899999 889988888743 38889
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCC----------CeeEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTM----------GSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
.|++ +|.+++..+.+ .+.+++.+.. +........ ...|.+.+|..+ .++..+ ..+++.+
T Consensus 151 ~Ws~--~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-----~~~lkYl 220 (443)
T PF04053_consen 151 IWSD--DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-----SNHLKYL 220 (443)
T ss_dssp EE-T--TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE------TTEEEEE
T ss_pred EEEC--CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-----CCeEEEE
Confidence 9876 55777777655 5666654432 001222222 456888888766 444443 3356553
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
--.....+..+. .++..+.+.+..+.++....|+.+..+.++.
T Consensus 221 ~~Ge~~~i~~ld----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 221 VNGETGIIAHLD----KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ETTEEEEEEE-S----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EcCCcceEEEcC----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 222112223322 2566667777667777777777777776643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0022 Score=69.95 Aligned_cols=190 Identities=14% Similarity=0.099 Sum_probs=114.6
Q ss_pred CCccEEEEEEcCCCCEEEEEE---CC-CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 405 VPISVSRVAWSPDGNYVGVAF---TK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~---~d-g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
-...+..-+|+|+++.++... .. ..+.++++++++..+.. . -.+.-..-+|+|||+. ++++...|+...+|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-~---~~g~~~~P~fspDG~~-l~f~~~rdg~~~iy 265 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-N---FNGNNGAPAFSPDGSK-LAFSSSRDGSPDIY 265 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee-c---cCCccCCccCCCCCCE-EEEEECCCCCccEE
Confidence 445677789999998876542 22 45999999988765422 2 3333456789999997 56667777765554
Q ss_pred --eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEE-cCCeEEE--EEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKA--WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 481 --d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~i--wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
|..++.+..+....+.-..=.|+| ||+.++..+ ..|.-.| ++.+.... ..+......-..-.|+|||++++.
T Consensus 266 ~~dl~~~~~~~Lt~~~gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 266 LMDLDGKNLPRLTNGFGINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEcCCCCcceecccCCccccCccCCC--CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence 566665655554333333334555 666666554 4555444 45544443 223333222237789999999998
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
.+.. ++.-.|.+.|+.++...+.+.... ....-.+.+++..++..+.
T Consensus 343 ~~~~-~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 343 ESSS-GGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred Eecc-CCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceEEEecc
Confidence 8742 223457777777666444333221 2334567788877776553
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00036 Score=71.10 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC----------HHHHHHHHhccCHHHHHHHHcCCC-CCCCccchhhHHH
Q 002264 6 RELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFT-KVDDNRYSMKIFF 74 (945)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~ 74 (945)
+.+..+|..++...|..+.+..|-+|||...+ +..+-+++..|+-.-|++.+..-. .+.+ ....+-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~--~~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE--KSSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc--ccccHHH
Confidence 34689999999999999999999999998753 678999999999999998875531 1111 1234889
Q ss_pred HHHHHHHhHhhccCCHH--HHHHHHHhhcccccccCHHHHHHHHH
Q 002264 75 EIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQ 117 (945)
Q Consensus 75 ~i~~~~~lell~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (945)
.+..+.|++++..|... +|++..|+.++||...+...++.|-.
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 99999999999999887 99999999999996655444554433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.06 Score=53.88 Aligned_cols=204 Identities=16% Similarity=0.176 Sum_probs=110.0
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC-CCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
.+.+-...+..++|.|+.+. ++++....+.|...+.+|+.+.++.-. .+..-.|++. +++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCe-EEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEEEEE
Confidence 35555667999999998775 677777788887788888888776533 3456777764 3556766665689999998
Q ss_pred ccCCCee------E--EecC---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC--CCCce-eeEec-----cccC
Q 002264 525 YDTMGSR------V--DYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTI-KRTYA-----GFRK 585 (945)
Q Consensus 525 ~~~~~~~------~--~~~~---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~--~~~~~-~~~~~-----~~~~ 585 (945)
+...... . .+.. ....+-.++|++.++.|+++-. .....|+-++. ..... ..... ....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE--~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE--RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE--SSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC--CCChhhEEEccccCccceeecccccccccccee
Confidence 8432211 1 1111 2336889999999888887753 11223444443 11111 11111 1111
Q ss_pred cceEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeeEEEeecCCC-------CCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 586 KSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
..+..++++|....++.- ..+..|..+| ..|+.+..+..... ...--.|+|.++|++.++ +.-+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 246788999976665554 4777888899 67777777665442 124578999999865554 455555444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.063 Score=58.97 Aligned_cols=68 Identities=12% Similarity=0.210 Sum_probs=48.0
Q ss_pred CCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCC-CCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
.+++..+++||+|+++|.-. +|.+.|...+-.+....+... ......+.|+. ++..++ .- ...|.+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l-~~-~~~l~lvg 285 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVL-SW-EDELLLVG 285 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEE-Ee-CCEEEEEC
Confidence 46899999999999999888 688988887666666666543 34678899987 443332 22 34566655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.15 Score=58.14 Aligned_cols=285 Identities=11% Similarity=0.075 Sum_probs=151.0
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~ 439 (945)
++.++.++.|+-.|..+|+.+=+ ........... .......-..+++ .+..++.++.|+.+.-.|.++|+
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~-------~~~~~~~~~~~-~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWK-------YDPKLPDDVIP-VMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeE-------ecCCCCccccc-ccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 66667788899999999987632 21100000000 0000000001222 23466778889999999999998
Q ss_pred ccccceeecccc--ccEEEEEEecCCCeeEEEEEe-----CCCcEEEEe-CCCceEEEecCCCC----------------
Q 002264 440 DLRQHSQIDAHV--GAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGRKLFNFEGHEA---------------- 495 (945)
Q Consensus 440 ~~~~~~~~~~h~--~~v~~l~~s~~~~~~~l~s~s-----~d~~i~vwd-~~~~~~~~~~~~~~---------------- 495 (945)
.+-... ...+. ..+++--..-++. +++..+ .+|.|..+| .+|+.+.++..-..
T Consensus 142 ~~W~~~-~~~~~~~~~~tssP~v~~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 142 VVWSKK-NGDYKAGYTITAAPLVVKGK--VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred EEeecc-cccccccccccCCcEEECCE--EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 764322 11111 1122111111343 333222 368899999 88988766532211
Q ss_pred ---------------CEE-EEEeeecCCccEEEEEEcC-----C-----------eEEEEEccCCCeeEEecCCCC----
Q 002264 496 ---------------PVY-SICPHHKENIQFIFSTAID-----G-----------KIKAWLYDTMGSRVDYDAPGH---- 539 (945)
Q Consensus 496 ---------------~v~-~~~~~~~~~~~~l~s~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~---- 539 (945)
.+. .+++.+ ...+++.+..+ + .|.-.|+++++....+....+
T Consensus 219 ~~~tw~~~~~~~gg~~~W~~~s~D~--~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD 296 (527)
T TIGR03075 219 GAKTWPGDAWKTGGGATWGTGSYDP--ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD 296 (527)
T ss_pred ccCCCCCCccccCCCCccCceeEcC--CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc
Confidence 111 112222 23455554421 2 566778888888876655332
Q ss_pred -----eEEEEEEcCCCC---EEEEEeecCCCCceEEEEeCCCCceeeE--------ec---c-ccC--------------
Q 002264 540 -----WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRT--------YA---G-FRK-------------- 585 (945)
Q Consensus 540 -----~i~~~~~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~--------~~---~-~~~-------------- 585 (945)
...-+.+..+|+ .++.+. ++|.+++.|..+|+++.. .. . ...
T Consensus 297 ~d~~~~p~l~d~~~~G~~~~~v~~~~----K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~ 372 (527)
T TIGR03075 297 YDGVNEMILFDLKKDGKPRKLLAHAD----RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGK 372 (527)
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEeC----CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCC
Confidence 112223334666 344444 589999999999987521 10 0 000
Q ss_pred ---cc-----------eEEEEEcCCCCEEEEEECC---------------------------------CcEEEEECCCCe
Q 002264 586 ---KS-----------NGVVQFDTTQNHFLAVGED---------------------------------SQIKFWDMDNVN 618 (945)
Q Consensus 586 ---~~-----------~~~~~~~~~~~~l~~~~~d---------------------------------g~i~iwd~~~~~ 618 (945)
.. -...+++|+...+++...+ |.|.-+|+.+++
T Consensus 373 ~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk 452 (527)
T TIGR03075 373 KGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK 452 (527)
T ss_pred CCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Confidence 00 0125566666665553322 457778888888
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccc
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (945)
..-..+.... ...+. ..-.+..++.++.+|.++.+|.++++.+.+
T Consensus 453 ~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~ 497 (527)
T TIGR03075 453 IVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWK 497 (527)
T ss_pred eeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEE
Confidence 7776654321 11222 122455777788899999999999955443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.084 Score=55.03 Aligned_cols=229 Identities=12% Similarity=0.114 Sum_probs=128.5
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE-----
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN----- 489 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~----- 489 (945)
..++.|+.|+.+| +.++++........ . .+...|..+...++-+ .++.-+ |+.+.+++ ..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578999999998 99999833322221 1 1334499999999888 444444 59999999 32222110
Q ss_pred ---------ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-----CeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 490 ---------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-----GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 490 ---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
-......+...+......+...+......+|.+|.+... .....+..+ ..+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 111223344444111223344455555668988887653 233344444 567888888 556666
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccC-----------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE--E
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--S 622 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 622 (945)
+. .....+.|+.++.....+..... .++..+... ++.+|++. |..-.+.|. .|+..+ .
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 65 45688899997766554432211 123333333 34555443 223333344 343332 3
Q ss_pred eecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC
Q 002264 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (945)
+.... ...++++. ..+++..+. +.|.||++.++ ++.+.+...
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~ 266 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLP 266 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECC
Confidence 33332 34566663 457777665 46999999998 566655543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.12 Score=56.81 Aligned_cols=168 Identities=11% Similarity=0.134 Sum_probs=90.0
Q ss_pred cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------CCCCeEEEEEEcC
Q 002264 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSA 548 (945)
Q Consensus 476 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~ 548 (945)
.|.+|+..|+.+.++.-..+.+.++.|... ..|+....||.+++||+.... ...+. .....+....+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~---e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD---EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC---CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 488888888888776554588999998653 467788899999999986333 22111 1111122223333
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCc-eeeEec---cccC-----cceE-EEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYA---GFRK-----KSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~---~~~~-----~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
+|-.+++. ++.+++..--... ..+.+. +... .... ...++.+....+....++.+++.+....+
T Consensus 138 ~GivvLt~------~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 138 NGIVVLTG------NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCEEEECC------CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 44333322 3444443322211 111111 1000 0000 02233444444444445555544332221
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
. +. ..+++..++.||+|+++|.-..+|.+.+....
T Consensus 212 ~---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 212 Q---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred c---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 1 11 12378999999999999999999998887653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.1 Score=58.20 Aligned_cols=245 Identities=11% Similarity=0.103 Sum_probs=126.5
Q ss_pred ccEEEEEEcCCCCEEEEE-ECCC----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-------
Q 002264 407 ISVSRVAWSPDGNYVGVA-FTKH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------- 474 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~-~~dg----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d------- 474 (945)
..+...++||||+++|.+ +..| .++++|+++|+.+.. .+.. .....+.|.++++. ++.+...+
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~--~~~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIEN--PKFSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEE--EESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--cccc--cccceEEEeCCCCE-EEEEEeCcccccccC
Confidence 345578999999999866 3334 499999999865532 1111 11223999999984 34443222
Q ss_pred ---CcEEEEe-CCCce--EEEecCCCCC--EEEEEeeecCCccEEEEEEcC----CeEEEEEccCC----CeeEEecC-C
Q 002264 475 ---KLIKVWE-LSGRK--LFNFEGHEAP--VYSICPHHKENIQFIFSTAID----GKIKAWLYDTM----GSRVDYDA-P 537 (945)
Q Consensus 475 ---~~i~vwd-~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~-~ 537 (945)
..|+.|. -++.. ...+...... ...+.. +.++++++..+.. ..+.+.++... .....+.. .
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 2366777 33321 3444444333 344554 4466776654433 23666676653 12222222 2
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce---eeEeccccCcceEEEEEcCCCCEEEEEE-CCC--cEEE
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDS--QIKF 611 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~i~i 611 (945)
......+... +..++..+..+...+.|...++..... ...+..+.. .+....+...+++|+... .++ .|++
T Consensus 277 ~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 277 DGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp SS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEE
Confidence 2223333333 444444443344567888888887653 223333333 222233333455666544 333 5888
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC----CCcEEEEECCCCc
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~----dg~i~iw~~~~~~ 662 (945)
+++..+.....+..... +.|..+...+++..+..... -+++.-+|+.+++
T Consensus 354 ~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99984555555555432 24556665565554443322 2578888888774
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=4.1e-05 Score=81.90 Aligned_cols=190 Identities=12% Similarity=0.106 Sum_probs=121.1
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee--EEecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
..+.|+++....+..+++.|..+|.|-+-..+..... .....+...+++++|++ |...|+++-...+.+..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666655555567888889999988876654332 23344556889999998 55666666544456788999999
Q ss_pred CCC--ceee--EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC-CCeeEEEeecCCCCCCccEEEEcC-CCCEEE
Q 002264 572 SEG--TIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFSK-EGNLLA 645 (945)
Q Consensus 572 ~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~ 645 (945)
.++ .+.. .|.+.......+++|..+.+.+++|.....+.++|++ +......+.. ..+..+..+| .+.+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCCCCCcee
Confidence 876 2221 2222122235578888888899999999999999987 3222223322 1457788888 788888
Q ss_pred EEECCCcEEEEEC-CCCccccccccCCccccccCcceeeeeccccc
Q 002264 646 VTTADNGFKILAN-AIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 646 ~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
+-. ||.|.+||. ..-+..+......+.. ....+..+++.|...
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~-~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENK-KPKQLFALAYCPTRT 256 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCC-cccceeeEEeccCCc
Confidence 766 899999993 3332333333222221 112466777777643
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0089 Score=65.65 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=91.3
Q ss_pred eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+.+.....+.--+++..+++++.|+.-|.+++|+...+.....-. .+....+.....+++..++|.|+..|.|.++-+.
T Consensus 28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccc-cCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 334333345556778889999999999999999988776554333 2233356778889999999999999999999887
Q ss_pred CCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
.+.........+-...+...|+++.|+++|..+++|...+....
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 75444444444444446678999999999999998877766654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.17 Score=55.17 Aligned_cols=266 Identities=11% Similarity=0.118 Sum_probs=164.7
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE-EE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la-s~ 424 (945)
....+.+.|+|..+.++-.....+..-+.. ...... ....-...-..++.++.+..+. +.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~------------------~~~~g~~~p~~i~v~~~~~~vyv~~ 92 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ------------------SLSVGGVYPAGVAVNPAGNKVYVTT 92 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee------------------eccCCCccccceeeCCCCCeEEEec
Confidence 677788888986555554333344444433 111100 0000113445788999888544 44
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
..+..|.+.|..+........ .+. ....++++++++.++++-.+ .++++.+.| .+++.+.....-..+ ..+++
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~ 167 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV 167 (381)
T ss_pred CCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence 456889999977655444221 122 56789999999864433333 478999999 777777765444444 77777
Q ss_pred eecCCccEEEE-EEcCCeEEEEEccCCCeeE-E---ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 503 HHKENIQFIFS-TAIDGKIKAWLYDTMGSRV-D---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 503 ~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.| +|..++. -..++.|.+.|........ . .......-..+.++++|.++.+.-.. +.++.+...|..++...
T Consensus 168 ~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 168 DP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNVLKIDTATGNVT 244 (381)
T ss_pred CC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceEEEEeCCCceEE
Confidence 66 5564444 4578999999966544432 1 11122234578899999987776531 11368999999888776
Q ss_pred eE-eccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCC-CCccEEEEcC
Q 002264 578 RT-YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSK 639 (945)
Q Consensus 578 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~sp 639 (945)
.. ...... ....+.++|+|..+++.. ..+.+.+-|..+............. ..+..+++.+
T Consensus 245 ~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 245 ATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 65 333332 345588999999999885 4588999999888877766543321 1244455544
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.093 Score=54.71 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=89.3
Q ss_pred CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe------
Q 002264 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY------ 580 (945)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~------ 580 (945)
.++.|+.|+.+| +.++++......... .....|..+...++-+.+++.+ ++.++++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-----d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-----DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-----CCccEEEEchhhcccccccccccc
Confidence 457899999998 888888332222222 2222399999999888888876 789999998765443311
Q ss_pred -------ccccCcceEEEE--EcCCCCEEEEEECCCcEEEEECCCC-----eeEEEeecCCCCCCccEEEEcCCCCEEEE
Q 002264 581 -------AGFRKKSNGVVQ--FDTTQNHFLAVGEDSQIKFWDMDNV-----NILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 581 -------~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~sp~g~~l~~ 646 (945)
.......+...+ -...+...++.....+|.+|..... ...+.+... ..+.+++|. ++.++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEe--CCEEEE
Confidence 001111233233 1234444555555568888877653 455666554 367899998 567887
Q ss_pred EECCCcEEEEECCCC
Q 002264 647 TTADNGFKILANAIG 661 (945)
Q Consensus 647 ~~~dg~i~iw~~~~~ 661 (945)
|..+ ...+.|+.++
T Consensus 154 ~~~~-~f~~idl~~~ 167 (275)
T PF00780_consen 154 GTSK-GFYLIDLNTG 167 (275)
T ss_pred EeCC-ceEEEecCCC
Confidence 7755 5778888765
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.2 Score=54.69 Aligned_cols=240 Identities=13% Similarity=0.130 Sum_probs=152.8
Q ss_pred cEEEEEEcCCCCEEEEEECCC-cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKH-LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg-~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
....+...+++..+....... .+...+... ..... ....-...-..++.++.+.. .+++...++.|.+.| ...+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 455678888886555443222 344444331 11111 11111134457888888886 556666678999999 5555
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEc---CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
......-- .....+++.+. ++.++.+.. ++++.+.|-.+............+ ..++++|+|..++.+.. .
T Consensus 108 ~~~~~~vG-~~P~~~~~~~~--~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVG-LGPVGLAVDPD--GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeec-cCCceEEECCC--CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 55444322 25566777664 445555444 688888888877776664333334 88999999998887753 4
Q ss_pred CceEEEEeCCCCceee-E----eccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 563 DSFLVEWNESEGTIKR-T----YAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
++.+.+.|.......+ . ... ......+.++++++.+++.... +.+...|..++............ .-..
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~ 257 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRG 257 (381)
T ss_pred CCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCc
Confidence 8899999977665553 1 111 1134568899999977776543 58999999988877652222221 3467
Q ss_pred EEEcCCCCEEEEEECC-CcEEEEECCCC
Q 002264 635 LRFSKEGNLLAVTTAD-NGFKILANAIG 661 (945)
Q Consensus 635 v~~sp~g~~l~~~~~d-g~i~iw~~~~~ 661 (945)
+..+|+|+.+.+.... +.+.+.|..+.
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 8999999999888554 78888888765
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.06 Score=52.74 Aligned_cols=261 Identities=11% Similarity=0.126 Sum_probs=146.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCc-EEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGE-ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
.--.|+|+|.-..-++.+-.-|+ ..++|..+.+..... .....+.+.||. .|||||.+|...
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-----------~s~~~RHfyGHG------vfs~dG~~LYAT 131 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-----------VSQEGRHFYGHG------VFSPDGRLLYAT 131 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-----------ecccCceeeccc------ccCCCCcEEEee
Confidence 44567888877655666666664 567888877655320 001112355564 699999999876
Q ss_pred EC-----CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEE
Q 002264 425 FT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 425 ~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~ 499 (945)
-. -|.|-|||...+ +....++..|.-....+.|.+||. .++.+ +|-|...-.-|+....+ -+
T Consensus 132 Endfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvva--nGGIethpdfgR~~lNl-------ds 198 (366)
T COG3490 132 ENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVA--NGGIETHPDFGRTELNL-------DS 198 (366)
T ss_pred cCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEe--CCceecccccCccccch-------hh
Confidence 43 367999998743 444557778888888999999999 45544 34454441111111111 11
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec----CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE-eCCCC
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW-NESEG 574 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw-d~~~~ 574 (945)
+ .-++.+.|..+++.+.+.. .+...|..+...+||+.++.+-..+..+..--+. -...+
T Consensus 199 M----------------ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g 262 (366)
T COG3490 199 M----------------EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKG 262 (366)
T ss_pred c----------------CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCC
Confidence 1 1111222222333222222 2334678888888888777665422221111111 11223
Q ss_pred ceeeEeccccC------cceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 575 TIKRTYAGFRK------KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 575 ~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
+.+..+..... ..+.+++.+.+..+++..+ ..+...+||..+|..+....... +..++- ...-+++.
T Consensus 263 ~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d----aaGva~--~~~gf~vs 336 (366)
T COG3490 263 EPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD----AAGVAA--AKGGFAVS 336 (366)
T ss_pred CcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc----ccccee--ccCceEEe
Confidence 33333322111 1466788887777777766 44567789999999887655432 233333 33345666
Q ss_pred ECCCcEEEEEC
Q 002264 648 TADNGFKILAN 658 (945)
Q Consensus 648 ~~dg~i~iw~~ 658 (945)
+.+|.+.++.-
T Consensus 337 sg~G~~~~~s~ 347 (366)
T COG3490 337 SGQGRIIFYSR 347 (366)
T ss_pred cCCceEEeccc
Confidence 67888887744
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0075 Score=64.71 Aligned_cols=94 Identities=17% Similarity=0.297 Sum_probs=62.7
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EEccC-Ccc--cc---cceeecccc-ccEEEEEEecC---C------CeeEEEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQL---YSYAG-SND--LR---QHSQIDAHV-GAVNDLAFAYP---N------KLLCVVTC 471 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~v---wd~~~-~~~--~~---~~~~~~~h~-~~v~~l~~s~~---~------~~~~l~s~ 471 (945)
.++.+|++++||.|..+..+.+ |+... +.. .. -...+.... ..|+++.|-|= . ...+++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999987776555 54321 111 01 011122111 57888777553 1 12389999
Q ss_pred eCCCcEEEEeCCCceEEEecCCCCCEEEEEeee
Q 002264 472 GDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504 (945)
Q Consensus 472 s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~ 504 (945)
..+|.|++|..+|..+..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 999999999999988876667899999887643
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.055 Score=53.00 Aligned_cols=266 Identities=13% Similarity=0.116 Sum_probs=135.2
Q ss_pred EEEEEcCCCC-EEEEEECCCc-EEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 589 GVVQFDTTQN-HFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (945)
Q Consensus 589 ~~~~~~~~~~-~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~ 661 (945)
..++++|... -++.+-.-|+ ..++|..+.+....+.......---.=.|||||.+|...-.| |.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3467777643 3444444443 578899888777666544322223344799999999876543 78999999877
Q ss_pred ccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccc
Q 002264 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 741 (945)
.+.+-.+..+-... ..+.+.+||+.++.+.++-...-+....... ..+..-.+.+.
T Consensus 151 fqrvgE~~t~GiGp-----Hev~lm~DGrtlvvanGGIethpdfgR~~lN-------------------ldsMePSlvll 206 (366)
T COG3490 151 FQRVGEFSTHGIGP-----HEVTLMADGRTLVVANGGIETHPDFGRTELN-------------------LDSMEPSLVLL 206 (366)
T ss_pred cceecccccCCcCc-----ceeEEecCCcEEEEeCCceecccccCccccc-------------------hhhcCccEEEE
Confidence 66666666655543 3588999999987654421110000000000 00000111111
Q ss_pred ccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCC-CCceeeeeccccccCCCccc
Q 002264 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATASAVPQHWLPSSGLL 820 (945)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 820 (945)
+... ...+...++|. ..+.-.|..++..+||..++.+--.|- ..+..+ .+...........+....+.
T Consensus 207 d~at---G~liekh~Lp~-~l~~lSiRHld~g~dgtvwfgcQy~G~-------~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 207 DAAT---GNLIEKHTLPA-SLRQLSIRHLDIGRDGTVWFGCQYRGP-------RNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred eccc---cchhhhccCch-hhhhcceeeeeeCCCCcEEEEEEeeCC-------CccCCcceeeccCCCcCcccCCCHHHH
Confidence 1111 11112223331 114556778888888875444322211 000000 00000000111112111111
Q ss_pred ccccccCCCcCCceeEEeecCCCceEEecC-C-CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEE
Q 002264 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-G-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (945)
Q Consensus 821 ~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d-~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~ 898 (945)
. . ....|-+++...+..+++..+ . +...+||..+|..+..-.- .....++-.. .-+++.+.+|.+.
T Consensus 276 ~-----~--~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~---~gf~vssg~G~~~ 343 (366)
T COG3490 276 A-----A--FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAK---GGFAVSSGQGRII 343 (366)
T ss_pred H-----H--HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceecc---CceEEecCCceEE
Confidence 0 1 234577888888777888777 4 5589999999988655432 1222333332 2344455677777
Q ss_pred EEe
Q 002264 899 IYN 901 (945)
Q Consensus 899 vwd 901 (945)
.+.
T Consensus 344 ~~s 346 (366)
T COG3490 344 FYS 346 (366)
T ss_pred ecc
Confidence 763
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.12 Score=53.77 Aligned_cols=240 Identities=13% Similarity=0.119 Sum_probs=125.7
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccC
Q 002264 592 QFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 592 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
.|.++...|+-+. ..+.|.-|+..++... .+..+.. +.++..-..+..|+++. ..+.+++.+++.. ...+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~---~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~-~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGG---FSSGALIDAGGRLIACE--HGVRLLDPDTGGK-ITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCC---cccceeecCCCeEEEEc--cccEEEeccCCce-eEEecc
Confidence 4666666444444 6778888888766433 2333332 34443333444454443 3466666654422 111111
Q ss_pred CccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCC
Q 002264 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (945)
Q Consensus 671 ~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 750 (945)
..........+.....|+|.+.+...+... . . ..... ..-.+|.+... .
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~--~--~-----------------------~~~~~-~~G~lyr~~p~---g 152 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFD--L--G-----------------------KSEER-PTGSLYRVDPD---G 152 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccc--c--C-----------------------ccccC-CcceEEEEcCC---C
Confidence 111111234566788888888764333100 0 0 00000 11134444310 1
Q ss_pred cceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCC
Q 002264 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (945)
Q Consensus 751 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 829 (945)
....+ +.. +-..-..++||||++.+..+.. .+.|.-|++........+. ........
T Consensus 153 ~~~~l-~~~---~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----------------~~~~~~~~-- 210 (307)
T COG3386 153 GVVRL-LDD---DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----------------RGFVDFDE-- 210 (307)
T ss_pred CEEEe-ecC---cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----------------ceEEEccC--
Confidence 11111 011 2334568999999998877776 4777777654311111111 00000111
Q ss_pred cCCceeEEeecCCCceEEecC-CC-eEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee
Q 002264 830 LEEAVPCIALSKNDSYVMSAT-GG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~s-d~-~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~ 892 (945)
..+..-.++...+|.+.+++- +| .|.+|+.+ ++++..+..+...+++++|-..+.+.|.+.+
T Consensus 211 ~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 211 EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 345556788889999886555 44 79999988 9999998877788899999653444444443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.084 Score=54.88 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=130.1
Q ss_pred EEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcE
Q 002264 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i 430 (945)
.|.|++..|+.+--..+.|.-|+..+++... +. +.+.+.++..-..+..|+++. . -+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~-g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-H-GV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-c-cc
Confidence 4567777677777778899999987765431 11 233445555544555555553 2 36
Q ss_pred EEEEccCCcccccceeec-cc-cccEEEEEEecCCCeeEEEEEeC------C-----CcEEEEeCCCceEEEecCCCCCE
Q 002264 431 QLYSYAGSNDLRQHSQID-AH-VGAVNDLAFAYPNKLLCVVTCGD------D-----KLIKVWELSGRKLFNFEGHEAPV 497 (945)
Q Consensus 431 ~vwd~~~~~~~~~~~~~~-~h-~~~v~~l~~s~~~~~~~l~s~s~------d-----~~i~vwd~~~~~~~~~~~~~~~v 497 (945)
.+++.+++.......... +. ....+.+...|+|. +.++... + |.++..|..+..+..+..+-..-
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 777776655422211111 11 24566788899998 3332222 1 23444444566666667666677
Q ss_pred EEEEeeecCCccEEEEE-EcCCeEEEEEccC-----CCe--eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEE
Q 002264 498 YSICPHHKENIQFIFST-AIDGKIKAWLYDT-----MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~-----~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iw 569 (945)
+.++|+|+ ++.++.+ +..+.|.-|++.. ... ........+..-.++...+|.+.+++.. +.+.|..|
T Consensus 166 NGla~SpD--g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~~ 240 (307)
T COG3386 166 NGLAFSPD--GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVRF 240 (307)
T ss_pred CceEECCC--CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEEE
Confidence 89999885 4555554 4457888887762 111 1122223334456777788887754432 23489999
Q ss_pred eCCCCceeeEeccccCcceEEEEEc-CCCCEEEEEE
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 604 (945)
+.. ++++..+..... .+++++|. ++.+.|++.+
T Consensus 241 ~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 241 NPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 988 888888877654 45566664 4555555554
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00076 Score=45.13 Aligned_cols=39 Identities=33% Similarity=0.455 Sum_probs=34.9
Q ss_pred ceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455677778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.069 Score=57.06 Aligned_cols=214 Identities=15% Similarity=0.132 Sum_probs=116.0
Q ss_pred CcEEEEEcCCCCcccccccccccccccCcccccccccCC--CccEEEEEEcCC----CCEEEEEEC----------CCcE
Q 002264 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSPD----GNYVGVAFT----------KHLI 430 (945)
Q Consensus 367 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~i~~s~~----g~~las~~~----------dg~i 430 (945)
+.|+|.|..+.+.+.... +..+ -..+..+.+..+ ..+|++|+. .|.|
T Consensus 2 s~i~l~d~~~~~~~~~~~-----------------l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri 64 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFE-----------------LEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRI 64 (321)
T ss_dssp -EEEEEETTTSSEEEEEE-----------------EETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEE
T ss_pred cEEEEEeCCCCeEEEEEE-----------------CCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEE
Confidence 357888877776654321 2221 123334444433 467887753 2889
Q ss_pred EEEEccCC----cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc-eEE-EecCCCCCEEEEEee
Q 002264 431 QLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLF-NFEGHEAPVYSICPH 503 (945)
Q Consensus 431 ~vwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~-~~~-~~~~~~~~v~~~~~~ 503 (945)
.++++... ..++.... ....++|++++-- .+ .++.+. .+.|.+|+ ...+ ... .+......+.++...
T Consensus 65 ~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 65 LVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred EEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 99999884 23332222 2457889998877 33 344333 58899999 4444 322 222233366666643
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCe-eE--EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-------
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGS-RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------- 573 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~------- 573 (945)
+++++.|.....+.++.++.... .. ........++++.+-++++.++++- .++.+.++....
T Consensus 139 ----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~~~~~~~~~ 210 (321)
T PF03178_consen 139 ----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYNPEIPNSRD 210 (321)
T ss_dssp ----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-SS-SSTTT
T ss_pred ----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEECCCCccccc
Confidence 25899999888888886655333 22 2233455788999987776665554 488888887652
Q ss_pred C--ceeeEeccccCcceEEE---EEcC--CC------CEEEEEECCCcEEE
Q 002264 574 G--TIKRTYAGFRKKSNGVV---QFDT--TQ------NHFLAVGEDSQIKF 611 (945)
Q Consensus 574 ~--~~~~~~~~~~~~~~~~~---~~~~--~~------~~l~~~~~dg~i~i 611 (945)
+ +......-|-+..++++ ++.| .+ ..++.++.+|.|.+
T Consensus 211 ~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 211 GDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 1 22223333333345554 3333 11 13666777777763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0017 Score=70.17 Aligned_cols=94 Identities=17% Similarity=0.383 Sum_probs=73.2
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE-EEEEcCCCCEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVGV 423 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~i~~s~~g~~las 423 (945)
..|.-+.|+|.-. |+|++..+|.|.+..+.- + ++|. +.-|...++ +++|.|||+.||.
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-q-------Rlwt------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLNW-Q-------RLWT------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEecc-c-------eeEe------------ccCCCCccceeeeecCCCCEEEE
Confidence 4789999999998 899999999999998863 2 2333 333555666 9999999999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEec
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 461 (945)
|-.||+|++.|+.+|..+... ...-..+|.++-|.+
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998766531 223455677787864
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=69.88 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=79.0
Q ss_pred CCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCee-EEEeecCCCceEEEeecCceEEEEecccceEE
Q 002264 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAST-FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~-~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~ 908 (945)
...+.-+.|+|.-.++|.+. +|.|.+..+. .+.+.++..|...++ +++|-| ||++||+|-.||+|++-|+++|..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45678899999999999999 8999999988 788899987887777 999999 8999999999999999999999877
Q ss_pred EEe-cCCCcceeEEEec
Q 002264 909 SKL-KGHQKRITGLAFS 924 (945)
Q Consensus 909 ~~l-~~h~~~V~~l~~s 924 (945)
... ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 662 2345678888886
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.44 Score=51.53 Aligned_cols=84 Identities=12% Similarity=0.209 Sum_probs=60.9
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC----------------C-E-E
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ----------------N-H-F 600 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~-l 600 (945)
..+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+....-+.....+ . + +
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 367889999998876664 3589999999999999999988877444333322211 1 1 2
Q ss_pred EEEECCCcEEEEECCCCeeEEEeecC
Q 002264 601 LAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
+-+-..|.|.||.+++|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 23557899999999999888877654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.013 Score=67.85 Aligned_cols=69 Identities=12% Similarity=0.232 Sum_probs=54.6
Q ss_pred cceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 765 ~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
....|++-+.+|. |++|+.+|.||+||- .|..-.+.+++ -..+|..|+++.||+
T Consensus 578 ~~Fs~~aTt~~G~-iavgs~~G~IRLyd~-----------------------~g~~AKT~lp~--lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 578 NNFSCFATTEDGY-IAVGSNKGDIRLYDR-----------------------LGKRAKTALPG--LGDPIIGIDVTADGK 631 (794)
T ss_pred CCceEEEecCCce-EEEEeCCCcEEeecc-----------------------cchhhhhcCCC--CCCCeeEEEecCCCc
Confidence 3467788888886 999999999999961 12233344666 679999999999999
Q ss_pred eEEecCCCeEEEEec
Q 002264 845 YVMSATGGKISLFNM 859 (945)
Q Consensus 845 ~la~~sd~~i~iwd~ 859 (945)
|+++.++..|.++++
T Consensus 632 wilaTc~tyLlLi~t 646 (794)
T PF08553_consen 632 WILATCKTYLLLIDT 646 (794)
T ss_pred EEEEeecceEEEEEE
Confidence 999998888888885
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.072 Score=56.29 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=110.1
Q ss_pred CccEEEEEE-cCCeEEEEEccCCC----eeEEecC---CC----CeEEEEEEcCCCCEEEEEeec--CCCCceEEEEeCC
Q 002264 507 NIQFIFSTA-IDGKIKAWLYDTMG----SRVDYDA---PG----HWCTTMLYSADGSRLFSCGTS--KDGDSFLVEWNES 572 (945)
Q Consensus 507 ~~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~---~~----~~i~~~~~s~~~~~l~~~~~~--~d~~~~i~iwd~~ 572 (945)
+.++|+..+ ..++|.+.|+.+.. ....+.. .. .....+-.-|+|+.++++-.+ +++.+.+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 67889999987432 1222221 00 122334445899888876553 3456678899998
Q ss_pred CCceeeEeccccCc--ceEEEEEcCCCCEEEEEE--------------------CCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 573 EGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVG--------------------EDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 573 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+.+........... .-..+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88887777654331 244577888888888853 23569999999999999998764322
Q ss_pred CccEEEEcC--CCCEEEEEE-CCCcEEEEEC-CCCc---cccccccCC-----cc-------ccccCcceeeeecccccc
Q 002264 631 NLPRLRFSK--EGNLLAVTT-ADNGFKILAN-AIGL---RSLRAVENP-----PF-------EALRTPIESVALKVSASS 691 (945)
Q Consensus 631 ~v~~v~~sp--~g~~l~~~~-~dg~i~iw~~-~~~~---~~~~~~~~~-----~~-------~~~~~~i~~v~~s~~g~~ 691 (945)
....+.|.. +..+=++++ -...|..|-- ..+. +.+-.+... .. .....-++.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 345566654 444433332 2334444433 3331 011111110 00 011233566777777777
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCC----------
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST---------- 761 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---------- 761 (945)
|. +++..+|.++.||+.+...+...-.+.+-+.-
T Consensus 326 LY------------------------------------vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g 369 (461)
T PF05694_consen 326 LY------------------------------------VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG 369 (461)
T ss_dssp EE------------------------------------EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS--
T ss_pred EE------------------------------------EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc
Confidence 65 56677799999999875555444333332210
Q ss_pred -CCccceEEEEEecCCCeEEEeee
Q 002264 762 -DTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 762 -~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
.-.+...-+..|-||++|....+
T Consensus 370 ~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 370 KRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ----S----EEE-TTSSEEEEE--
T ss_pred cccCCCCCeEEEccCCeEEEEEee
Confidence 01123356778888888876543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0022 Score=42.75 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=34.3
Q ss_pred ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
+++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355677778899999999999 788999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.15 Score=54.50 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=103.9
Q ss_pred cEEEEe-CCCceEEEecC-CCCCEEEEEeee-cC----CccEEEEEEc----------CCeEEEEEccCC----CeeE--
Q 002264 476 LIKVWE-LSGRKLFNFEG-HEAPVYSICPHH-KE----NIQFIFSTAI----------DGKIKAWLYDTM----GSRV-- 532 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~-~~~~v~~~~~~~-~~----~~~~l~s~~~----------dg~i~iwd~~~~----~~~~-- 532 (945)
.|++.| .+.+.+..+.- ....+.+++... .. ...+++.|+. .|.|.++++... ....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577777 56665544432 122344444322 21 1367777753 289999999884 1111
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEE
Q 002264 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 533 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 611 (945)
......++|++++-- +++ ++++. .+.|.+|++...+ ....-..+....+.++.. .++++++|.....+.+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-----g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-----GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-----TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-----cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEE
Confidence 112235578888765 344 55554 6789999998877 544433333323444444 3679999998888888
Q ss_pred EECCC-CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 612 WDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 612 wd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+..+. ...+..+........+.++.+-++++.++.+..+|.+.++...
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 75543 3323333333333367888888776799999999999999875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.024 Score=64.84 Aligned_cols=148 Identities=11% Similarity=0.131 Sum_probs=87.1
Q ss_pred cceEEEEEecCCCeEEEeee------cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEe
Q 002264 765 SKVVRLLYTNSAVGLLALGS------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (945)
Q Consensus 765 ~~v~~l~~s~dg~~l~~~~~------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~ 838 (945)
..+...+++|||+.++.... |+.-.||-.+ . .+.. .....+ ...+.-.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~--------------------~-gg~~-~~lt~g----~~~t~Ps 403 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGP--------------------L-GGVA-VQVLEG----HSLTRPS 403 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEe--------------------C-CCcc-eeeecC----CCCCCce
Confidence 46788999999999887762 4444555321 1 1111 111222 2377889
Q ss_pred ecCCCceEEecCCC-e-EEEE-----------eccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEE---Eec
Q 002264 839 LSKNDSYVMSATGG-K-ISLF-----------NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI---YNV 902 (945)
Q Consensus 839 ~s~dg~~la~~sd~-~-i~iw-----------d~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~v---wd~ 902 (945)
|+|||+.+++.+++ . +++. +++.++... ...+.|..+.||| ||..||... +|.|+| -..
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeC
Confidence 99999988877643 2 3333 333322221 2345799999999 788777665 578887 444
Q ss_pred ccce-EE---EEecC-CCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 903 RVDE-VK---SKLKG-HQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 903 ~~~~-~~---~~l~~-h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
..|+ .+ ..+.. -...+.++.|..++.++ .+..++...+|.+
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 4554 11 11222 23346889999999855 4444444455643
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0018 Score=58.01 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHH
Q 002264 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (945)
Q Consensus 71 ~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (945)
.++|+|+.+.||||+..|..++|..|+.+.-..+...+.+++++|+.+....+..+++....++. +..+-..|
T Consensus 28 ~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL 107 (133)
T cd08044 28 QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLL 107 (133)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHH
Confidence 39999999999999999999999999998877776667899999999988888777776655543 33444566
Q ss_pred HHHHHh
Q 002264 144 LIELKK 149 (945)
Q Consensus 144 ~~~l~~ 149 (945)
+..|++
T Consensus 108 ~~~L~~ 113 (133)
T cd08044 108 LRFLES 113 (133)
T ss_pred HHHHHH
Confidence 665554
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0015 Score=59.25 Aligned_cols=79 Identities=14% Similarity=0.287 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHH
Q 002264 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (945)
Q Consensus 71 ~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (945)
.++|+|+.|.||+|+..|..++|..|+.+.-.-+...+.+++++|..+....+..+++....++. +..+-..|
T Consensus 39 ~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL 118 (142)
T PF04494_consen 39 RLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLL 118 (142)
T ss_dssp GGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHH
Confidence 38999999999999999999999999999877776667788999988777666655554443333 33444555
Q ss_pred HHHHHh
Q 002264 144 LIELKK 149 (945)
Q Consensus 144 ~~~l~~ 149 (945)
+..|+.
T Consensus 119 ~~fL~~ 124 (142)
T PF04494_consen 119 LQFLQE 124 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.091 Score=44.24 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=66.6
Q ss_pred EEEEEEcC---CC-CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 409 VSRVAWSP---DG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 409 V~~i~~s~---~g-~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
|+++++.. || +.|++|+.|..|++|+-+ +.+. ++. -.+.|++++-...+ .|+.+-.+|+|-+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeCcc
Confidence 56676665 33 579999999999999743 2232 222 45678888877764 589999999999999533
Q ss_pred ceEEEecCCCCCEEEEEee-ecCCc-cEEEEEEcCCeEE
Q 002264 485 RKLFNFEGHEAPVYSICPH-HKENI-QFIFSTAIDGKIK 521 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~-~~~~~-~~l~s~~~dg~i~ 521 (945)
+ +...+.... +.++++. ...+| .-|++|-.+|.|-
T Consensus 73 R-lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 R-LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3 334443333 5555543 33232 3578888888764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.16 Score=58.30 Aligned_cols=235 Identities=11% Similarity=0.026 Sum_probs=119.4
Q ss_pred CCCEEEEEECCC------cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC------CcEEEEe-CC
Q 002264 417 DGNYVGVAFTKH------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LS 483 (945)
Q Consensus 417 ~g~~las~~~dg------~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d------~~i~vwd-~~ 483 (945)
.+.+++.||.++ .+..||..++.-.. ...+. +...-.+++... +. +.++||.| .++..|| ..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 455666676663 57888888763321 11222 222234455543 44 78889888 3567788 55
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCe-----EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
++-. .+..-..+-.......- +|.+.++||.||. +-.||..+.+-...-......-..-...-+|+..+++|.
T Consensus 359 ~~W~-~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 359 NQWT-PVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred Ccee-ccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence 4422 22211111111111111 5678889998874 667776654433222111111111122235666667765
Q ss_pred cCCCC--ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCc-----EEEEECCCCeeEEEeecCCCCCC
Q 002264 559 SKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-----IKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 559 ~~d~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
+...+ ..+..||..+.+....-.-.....-..++. -++...++||.|+. |..||..+.+....-........
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 43322 578899998876544332222211112222 24566677776653 77788877665444222221112
Q ss_pred ccEEEEcCCCCEEEEEECCC-----cEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg-----~i~iw~~~~~ 661 (945)
+..+.+ +++..++|+.|| +|..||..++
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 222222 567778888775 3555655544
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.044 Score=58.34 Aligned_cols=139 Identities=8% Similarity=0.062 Sum_probs=92.0
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC--------EEEEEeecCCCCceEEEEeCCCCc--eeeE
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS--------RLFSCGTSKDGDSFLVEWNESEGT--IKRT 579 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~~~d~~~~i~iwd~~~~~--~~~~ 579 (945)
++.++.....++-.|++.++.+-....+.. |+-+.+.|+.+ .|+..+ +..|.-||++-.. .+..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs-----~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLS-----DNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeec-----CCceEEecccccCcceeee
Confidence 445556666788888888888888777766 66777777654 233332 7789999987432 2222
Q ss_pred ecccc---CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 580 YAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 580 ~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
.+++. +....|.+-..+ .++++|+.+|.|++||.-.......+++-+. +|..|..+.+|++|+..+. ..+.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGKwil~Tc~-tyLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGKWILATCK-TYLLLI 497 (644)
T ss_pred eeccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCcEEEEecc-cEEEEE
Confidence 22221 112444444444 5899999999999999844444444554444 8999999999999887664 466665
Q ss_pred EC
Q 002264 657 AN 658 (945)
Q Consensus 657 ~~ 658 (945)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 54
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=2.7 Score=49.73 Aligned_cols=243 Identities=8% Similarity=0.014 Sum_probs=118.8
Q ss_pred ccEEEEEEcCCCCEEEEEEC-----CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----Cc
Q 002264 407 ISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~ 476 (945)
-.+..+.|||||++||.+.. ...|++.|+.+|..+.. .+.+ .. ..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~~--~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-VE--PSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-cc--eEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 45778899999999987643 23588999988864321 1221 11 46999999985 34443322 35
Q ss_pred EEEEe-CCC--ceEEEecCCCCCEEEEEeeecCCccEEEEEEc---CCeEEEEEccC--CCeeEEecCCCCeEEEEEEcC
Q 002264 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (945)
Q Consensus 477 i~vwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~ 548 (945)
|..++ -++ +....+........ +......++++++..+. ++.+.+++.+. +.....+.........+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 66677 444 22333443333333 22222335565554443 34678888533 222222222222222222 22
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEE--ECCCCeeEEEeec
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW--DMDNVNILTSTDA 625 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~ 625 (945)
+..++..+..+.....|...++.. ++....+.......+..+.+.. +..+++...+|.-+++ +..++ .+..+..
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~ 355 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR-EVIGIAF 355 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC-ceEEecC
Confidence 344444442222244455556552 3322333332333567777762 3444455566665544 54333 3333332
Q ss_pred CCCCCCccEEEEc--CCCC-EEEEEEC---CCcEEEEECCCC
Q 002264 626 EGGLPNLPRLRFS--KEGN-LLAVTTA---DNGFKILANAIG 661 (945)
Q Consensus 626 ~~~~~~v~~v~~s--p~g~-~l~~~~~---dg~i~iw~~~~~ 661 (945)
... ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 122223344 3433 4444433 367888888765
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.28 Score=52.08 Aligned_cols=206 Identities=15% Similarity=0.130 Sum_probs=91.3
Q ss_pred CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccccc-CCCccEEEEEEcCCCCEEEEEE--CC----
Q 002264 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAF--TK---- 427 (945)
Q Consensus 355 ~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~i~~s~~g~~las~~--~d---- 427 (945)
+.++|++-|-.++.|.|.|+.+.-... +-.|+.+.. .+.. ..-..-..+-.-|+|+.++++- .+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 456656656578899999987533211 001111110 0010 0111222334447898888763 22
Q ss_pred CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe--------------------CCCcEEEEe-CCCce
Q 002264 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--------------------DDKLIKVWE-LSGRK 486 (945)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s--------------------~d~~i~vwd-~~~~~ 486 (945)
|-+.++|-++-+.......-.+....-+.+-|.|..+ .++|+. ...++.+|| .+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 3477777665443332111112233456777888777 777764 246899999 77888
Q ss_pred EEEecCCC--CCEEEEEeeecCCccEEEEEE-cCCeEEEEEc-cCCC----eeEEecCC-----------------CCeE
Q 002264 487 LFNFEGHE--APVYSICPHHKENIQFIFSTA-IDGKIKAWLY-DTMG----SRVDYDAP-----------------GHWC 541 (945)
Q Consensus 487 ~~~~~~~~--~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~-~~~~----~~~~~~~~-----------------~~~i 541 (945)
++++.--. .....+.|..+++..+-++++ -..+|..|-- +.+. .+..+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88776433 235567776666554444433 3444444432 2221 11111110 2357
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
+.+.+|.|.++|.++.. ..|.++.||+...
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 89999999999998876 6899999999874
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.097 Score=44.08 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=63.5
Q ss_pred EEEEEEe---CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 347 VISMDFH---PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 347 V~~v~fs---p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
|+++++. -||..-|++||.|..|+||+-.. .+.+ +. -.+.|+++.-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E-------------------i~-e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE-------------------IT-ETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE-------------------Ee-cccceEEEEEcCC-CEEEE
Confidence 5555554 45656689999999999998432 2211 11 2457778777666 56888
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEec---CCCeeEEEEEeCCCcEE
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~~~l~s~s~d~~i~ 478 (945)
+..+|+|-+|+-... +- ..+ .+..+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lW---RiK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LW---RIK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--ee---eec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999975321 11 122 222355655543 4443 577887777663
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0093 Score=68.61 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCceEEecC-CCeEEEEeccCc-eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCccee
Q 002264 842 NDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (945)
Q Consensus 842 dg~~la~~s-d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 919 (945)
.+.++|.|+ .|.+...|+... .+...=..-.++|++++|+. +|.+++.|-.+|.|.+||+..++.++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 566788887 567888887642 11122222456799999999 999999999999999999999999998887777766
Q ss_pred EEEe---cCCcceeeeecCCceEEEEec
Q 002264 920 GLAF---STSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 920 ~l~~---s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++-+ ..++..++++..-|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6554 356667888877775 6654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=3.5 Score=48.88 Aligned_cols=242 Identities=10% Similarity=0.042 Sum_probs=120.2
Q ss_pred cEEEEEEeCCCCeEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.+..+.+||||++++.+-+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 6778899999996555433333 688899988764321 1111 11469999999877
Q ss_pred EEEECC------CcEEEEEccCCcc-cccceeeccccccEE-EEEEecCCCeeEEEEEe-CCCcEEEEe--C-CCceEEE
Q 002264 422 GVAFTK------HLIQLYSYAGSND-LRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCG-DDKLIKVWE--L-SGRKLFN 489 (945)
Q Consensus 422 as~~~d------g~i~vwd~~~~~~-~~~~~~~~~h~~~v~-~l~~s~~~~~~~l~s~s-~d~~i~vwd--~-~~~~~~~ 489 (945)
+....+ ..|+.+++.++.. -.. .+........ .+..+.+++.+++-+.+ .++.+.+++ . .+.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 766442 3578888887721 111 2322223333 33334477753322222 245788888 2 3432222
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
+..-......+. +. .+.+++....+ ..|...++........+..+ ...+..+.+. ++.|+.... .++..
T Consensus 265 ~~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLT 338 (686)
T ss_pred EECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEE
Confidence 222222223322 22 22333333222 23433444422222222233 3367777776 445554443 23455
Q ss_pred eEEEEeCCCCceeeEec-cccCcceEEEEEc--CCCC-EEEEEE---CCCcEEEEECCCCe
Q 002264 565 FLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 618 (945)
.+++++..++.. ..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 339 ~l~~~~~~~~~~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTREV-IGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCce-EEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 667777654433 3332 1111 22323344 3333 444433 45678889988765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.05 Score=57.92 Aligned_cols=144 Identities=12% Similarity=0.125 Sum_probs=97.3
Q ss_pred CCCEEE-EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeE-----EEEEeCCCcEEEEe--CCCc-eE
Q 002264 417 DGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC-----VVTCGDDKLIKVWE--LSGR-KL 487 (945)
Q Consensus 417 ~g~~la-s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~-----l~s~s~d~~i~vwd--~~~~-~~ 487 (945)
+.++|+ ++.....++-.|++.|+.+. ...-|.. |.-+.+.|+.+.-. -+.|-.|+.|.-|| ..+. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 45555668888999998776 4544554 77788888754211 13455688999999 5555 23
Q ss_pred EEecCCC----CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 488 FNFEGHE----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
..-.+|. ....|.+- .++ .++++||.+|.|++||--.......+.+-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2222321 23444443 334 4899999999999999644444456777788999999999999999876 6
Q ss_pred ceEEEEeCC
Q 002264 564 SFLVEWNES 572 (945)
Q Consensus 564 ~~i~iwd~~ 572 (945)
..+.+.+..
T Consensus 492 tyLlLi~t~ 500 (644)
T KOG2395|consen 492 TYLLLIDTL 500 (644)
T ss_pred cEEEEEEEe
Confidence 677777753
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.42 Score=54.91 Aligned_cols=190 Identities=13% Similarity=0.084 Sum_probs=97.4
Q ss_pred ccccEEEEEEecCCCeeEEEEE----eCCC--cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC------
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTC----GDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------ 517 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~----s~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------ 517 (945)
....+.+.+++|+|+.+.++.. ..|. .|.+++..+.......+. ....-.|+| +|..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWsp--DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSL--DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECC--CCCceEEEecCcceEEE
Confidence 3346889999999995322221 1244 444445433332222222 255566665 55556555432
Q ss_pred ------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE---EeCCCCcee----eEecccc
Q 002264 518 ------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE---WNESEGTIK----RTYAGFR 584 (945)
Q Consensus 518 ------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i---wd~~~~~~~----~~~~~~~ 584 (945)
+.+.+.+++.+.... .....|..+.|||||.+++... ++.|++ -....|... ..+....
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-----GGKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-----CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence 223323333322222 2234699999999999998876 456766 444444311 1122112
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
...+..+.|..++.. +++..++.-.+|.+.- |.....+.......++..++-+++ .++....+|.+.
T Consensus 496 ~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 496 GDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred CCccccceEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 213466889988874 4555544444454321 222222233222346667776653 455555565443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.014 Score=40.74 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=29.3
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD 378 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~ 378 (945)
...|.+++|+|... |+|.|+.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 35799999999999 8999999999999998 444
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.43 Score=54.96 Aligned_cols=219 Identities=9% Similarity=0.040 Sum_probs=102.7
Q ss_pred cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC------CcEEEEe-CCCceEEEecCCCCCE--EE
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LSGRKLFNFEGHEAPV--YS 499 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d------~~i~vwd-~~~~~~~~~~~~~~~v--~~ 499 (945)
.+..||..+++-.. ...+...... .+++. -++. +++.||.+ ..+..|| .++.- ..+..-..+. .+
T Consensus 273 ~v~~yd~~~~~W~~-l~~mp~~r~~-~~~a~-l~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~ 346 (557)
T PHA02713 273 CILVYNINTMEYSV-ISTIPNHIIN-YASAI-VDNE--IIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFS 346 (557)
T ss_pred CEEEEeCCCCeEEE-CCCCCccccc-eEEEE-ECCE--EEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhcee
Confidence 56778887754221 1122211111 12222 2455 66677753 3467788 44432 2222111111 11
Q ss_pred EEeeecCCccEEEEEEcCC-----eEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCC-----------
Q 002264 500 ICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKD----------- 561 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d----------- 561 (945)
++. - +|.+.+.||.++ .+..||..+..-...-..+ ......+. -+|+..+.||.+..
T Consensus 347 ~~~--~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 347 LAV--I-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred EEE--E-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccc
Confidence 221 1 457777887764 4778887764322211111 11111222 35666666654211
Q ss_pred --------CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC------CcEEEEECCC-CeeEEEeecC
Q 002264 562 --------GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDN-VNILTSTDAE 626 (945)
Q Consensus 562 --------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~ 626 (945)
....+..||..+.+....-.-... ........-++...+.||.+ ..+..||..+ .+-...-..+
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 024578899887654332221111 11111122235566666643 2467899887 4433222222
Q ss_pred CCCCCccEEEEcCCCCEEEEEECCC--cEEEEECCCC
Q 002264 627 GGLPNLPRLRFSKEGNLLAVTTADN--GFKILANAIG 661 (945)
Q Consensus 627 ~~~~~v~~v~~sp~g~~l~~~~~dg--~i~iw~~~~~ 661 (945)
........+++ +|++.++||.+| .+-.||..+.
T Consensus 501 ~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 501 SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 21112222333 788889999887 5666766655
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.13 Score=59.80 Aligned_cols=145 Identities=12% Similarity=0.133 Sum_probs=96.3
Q ss_pred CCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC-EEEEEeeec---CCccEEEEEEcCCeEEEEEccCCCee-EEec-
Q 002264 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSR-VDYD- 535 (945)
Q Consensus 463 ~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~- 535 (945)
...++|........|+-.| ..|+.+..+..+... |..++-... -+..-.+.|-.+..+..||.+..... ..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 3333455555667888889 899999999887654 766653211 01234567778889999999875422 2111
Q ss_pred ---CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 002264 536 ---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (945)
Q Consensus 536 ---~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 612 (945)
......+|++-+.+|. |++++. +|.|++||--..+....+++... +|..+.++.||+++++.+. ..|.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEE
Confidence 1233677888877775 555654 89999999543333344555444 8999999999999988774 456666
Q ss_pred EC
Q 002264 613 DM 614 (945)
Q Consensus 613 d~ 614 (945)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 64
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.024 Score=39.59 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=29.4
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~ 439 (945)
...|.+++|+|..++||.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.98 E-value=3.1 Score=45.24 Aligned_cols=273 Identities=10% Similarity=0.150 Sum_probs=144.3
Q ss_pred CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-----CCCEEEEEECCC
Q 002264 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGVAFTKH 428 (945)
Q Consensus 354 p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-----~g~~las~~~dg 428 (945)
++++..+++||..|.++||+...+..... ++ -+-..-..+|..++.-+ +...||+ -.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l--------------llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL--------------LLETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCc-cE--------------EEEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 34444689999999999999854432211 00 00111245677766543 2334554 4566
Q ss_pred cEEEEEccCC-------cccccceeeccccc--cEEEEEEecC----CCeeEEEEEeCCCcEEEEeCCCceE-EEecC--
Q 002264 429 LIQLYSYAGS-------NDLRQHSQIDAHVG--AVNDLAFAYP----NKLLCVVTCGDDKLIKVWELSGRKL-FNFEG-- 492 (945)
Q Consensus 429 ~i~vwd~~~~-------~~~~~~~~~~~h~~--~v~~l~~s~~----~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~-- 492 (945)
.+.||.+... ...... .+..|.- ....++.-|- |+. .+..=+.||.+.+++.+.-.. ..+.+
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~-~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLE-LIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEE-EEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 7888887321 111111 1223332 2333343332 233 778889999999999544443 33332
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-----------------------eeEEecCCCC--eEEEEEEc
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------SRVDYDAPGH--WCTTMLYS 547 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~--~i~~~~~s 547 (945)
..+++ ++.+.. ..+++++.+..+..|....-. ..+++..... .|..+.++
T Consensus 176 lPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 23443 444544 468888888888888642100 0011111111 33344444
Q ss_pred CCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC----CC---CEEEEEECCCcEEEEECCCCeeE
Q 002264 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
.....+++.+ ...+.+.+. +|......+- .-.......+.. .+ ..+++++.++.+.||.= .+++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEE
Confidence 4444555554 667777775 3543332222 111222222221 22 25888999999999863 3444
Q ss_pred EEeecCCCCCCccEEE---EcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGLPNLPRLR---FSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~---~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
........ +| ++. |..-...|++-+.+|.+.+-=+.|.
T Consensus 322 WsA~l~~~--PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHV--PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCC--CE-EEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 44433221 22 332 2233568888899999998877665
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.1 Score=51.55 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=114.8
Q ss_pred EEEEEeCcC------cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC-C---
Q 002264 359 LLLVGSSNG------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-H--- 428 (945)
Q Consensus 359 llasgs~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d-g--- 428 (945)
+++.|+.++ .+..+|..+++...-.+ +. +...-.+++.. +|...++||.| |
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 677777663 67788877764332100 11 11122233333 56778888888 3
Q ss_pred --cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-----cEEEEeCCCceEEEecCCCCCEEEEE
Q 002264 429 --LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWELSGRKLFNFEGHEAPVYSIC 501 (945)
Q Consensus 429 --~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~v~~~~ 501 (945)
++..||..+++-.. ...+............ +|. +.+.||.|| ++-.||.....-...........+..
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g 422 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG 422 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeE
Confidence 47888887765322 2223222222222222 465 778888886 46678832222222221222222222
Q ss_pred eeecCCccEEEEEEcCC------eEEEEEccCCCeeEEecCCCCeE-EEEEEcCCCCEEEEEeecC-CCCceEEEEeCCC
Q 002264 502 PHHKENIQFIFSTAIDG------KIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCGTSK-DGDSFLVEWNESE 573 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~~~-d~~~~i~iwd~~~ 573 (945)
...- +|.+.++||.++ ++..||..+..-...-....... ..++ .-++...+.+|.++ .....+..||..+
T Consensus 423 v~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 423 VAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCC
Confidence 2222 567888888654 46778776654433222211111 1122 23455666666432 1133477899887
Q ss_pred CceeeEecccc-CcceEEEEEcCCCCEEEEEECCCc-----EEEEECCCCee
Q 002264 574 GTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQ-----IKFWDMDNVNI 619 (945)
Q Consensus 574 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~ 619 (945)
.+....-.-.. ......+. -++...++|+.||. |..||..+.+-
T Consensus 501 ~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 76554421111 11122222 23556667776653 55566555443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.55 Score=54.07 Aligned_cols=195 Identities=5% Similarity=-0.074 Sum_probs=91.9
Q ss_pred CCCEEEEEECC------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-----cEEEEe-CCC
Q 002264 417 DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-LSG 484 (945)
Q Consensus 417 ~g~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-----~i~vwd-~~~ 484 (945)
++...+.||.+ ..+..||..++.-. ....+.........+ .-+|+ +.+.||.++ ++..|| .++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~--~~~g~--IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA--VIDDT--IYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE--EECCE--EEEECCcCCCCCCceEEEEECCCC
Confidence 67777777753 34778888765321 111222111222222 22565 667777654 477889 444
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC-----------------------eEEEEEccCCCeeEEecCCCCeE
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-----------------------KIKAWLYDTMGSRVDYDAPGHWC 541 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~i 541 (945)
+- ..+.....+....+...- +|.+.+.||.++ .+..||..+.+-...-.......
T Consensus 378 ~W-~~~~~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 378 KW-KMLPDMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred eE-EECCCCCcccccccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 32 222221111111111011 456777777653 46667766543222111111111
Q ss_pred EEEEEcCCCCEEEEEeecCCC--CceEEEEeCCC-Ccee--eEeccccCcceEEEEEcCCCCEEEEEECCC--cEEEEEC
Q 002264 542 TTMLYSADGSRLFSCGTSKDG--DSFLVEWNESE-GTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDM 614 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~--~~~i~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~ 614 (945)
..-...-+++..+.||.+... ...+..||..+ .+.. ..+..... ....+.+ ++...++||.+| .+..||.
T Consensus 456 ~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 456 RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 111122345555555542111 13467899887 4433 22322221 2222333 567778888777 6667777
Q ss_pred CCCeeEE
Q 002264 615 DNVNILT 621 (945)
Q Consensus 615 ~~~~~~~ 621 (945)
.+.+-..
T Consensus 533 ~~~~W~~ 539 (557)
T PHA02713 533 YTYEWNH 539 (557)
T ss_pred ccccccc
Confidence 6665443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.92 E-value=5.4 Score=47.43 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=111.9
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCC--------EEEEEeee--------------cCCccEEEEEEcCCeEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP--------VYSICPHH--------------KENIQFIFSTAIDGKIKAW 523 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~iw 523 (945)
.++.++.++.|.-.| .+|+.+.++...... ...+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 345555566666677 667666555422110 11222211 1123478888899999999
Q ss_pred EccCCCeeEEecCCCCe------------EEEEEEcC--CCCEEEEEeecCC------CCceEEEEeCCCCceeeEeccc
Q 002264 524 LYDTMGSRVDYDAPGHW------------CTTMLYSA--DGSRLFSCGTSKD------GDSFLVEWNESEGTIKRTYAGF 583 (945)
Q Consensus 524 d~~~~~~~~~~~~~~~~------------i~~~~~s~--~~~~l~~~~~~~d------~~~~i~iwd~~~~~~~~~~~~~ 583 (945)
|.++++....+...+.. ...+.-.| .+..+++++...| -.+.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99998888765332110 00111112 2345555543222 2688999999999988766421
Q ss_pred c----------------Ccce-EEEEEcCCCCEEEEEE------------------CCCcEEEEECCCCeeEEEeecCCC
Q 002264 584 R----------------KKSN-GVVQFDTTQNHFLAVG------------------EDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 584 ~----------------~~~~-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
. ...+ ...+++++...++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0001 2345666655555532 134567778888988877765322
Q ss_pred C-------CCccEEEEcC-CCC---EEEEEECCCcEEEEECCCCcc
Q 002264 629 L-------PNLPRLRFSK-EGN---LLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 629 ~-------~~v~~v~~sp-~g~---~l~~~~~dg~i~iw~~~~~~~ 663 (945)
. ....-+.+.. +|+ .++.++.+|.+.++|.++++.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 0 0111122322 553 788999999999999999943
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.94 Score=43.37 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=65.3
Q ss_pred EEEEEecCCCeEEEeee-cCeEEEEeec--CCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 768 VRLLYTNSAVGLLALGS-NGVQKLWKWH--RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~-dg~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
.+++|+.|.+.+....+ +-+|.-||.+ ....+.. -.++|+++.+.....+ .-.+++..+|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr--------~~i~dlrk~~~~e~~~--------PDGm~ID~eG~ 224 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR--------KVIFDLRKSQPFESLE--------PDGMTIDTEGN 224 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCc--------ceeEEeccCCCcCCCC--------CCcceEccCCc
Confidence 56888888887766655 6777778743 2222111 1234555443322111 22345566777
Q ss_pred eEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeec
Q 002264 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (945)
Q Consensus 845 ~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (945)
+.++.- .++|.-.|..+|+.+.+++-....|+|++|-.
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 666554 78899999999999999998889999999975
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.02 Score=54.37 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=72.5
Q ss_pred CceEEecC-CCeEEEEeccC-ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCC-ccee
Q 002264 843 DSYVMSAT-GGKISLFNMMT-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRIT 919 (945)
Q Consensus 843 g~~la~~s-d~~i~iwd~~~-~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~ 919 (945)
+..+++|+ +|.|.+|+..- +.....+..-...|-+..-.-+++.+..++..||.|+-|++.-++.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34556665 89988887652 122122222233344443333356689999999999999999999888888888 6777
Q ss_pred EEEecCCcceeeee--cCCceEEEEec
Q 002264 920 GLAFSTSLNILVSS--GADAQVTLCVE 944 (945)
Q Consensus 920 ~l~~s~dg~~l~s~--~~Dg~i~vWdl 944 (945)
.+..+..++.++.+ |.|..++.|++
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcch
Confidence 77777788888888 88888888886
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.29 Score=49.78 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCCEEEEEE---CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE-CCCCc
Q 002264 587 SNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA-NAIGL 662 (945)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~-~~~~~ 662 (945)
.+...+++++++.+++.. ....++++... ....... .. ..+....|++++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 577789999999887766 33445555543 3222221 12 2678889999988887777777777774 33332
Q ss_pred cccccccCCccccccCcceeeeecccccceec
Q 002264 663 RSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 663 ~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
........... ...|..+.++|||.+++.
T Consensus 100 ~~~~~v~~~~~---~~~I~~l~vSpDG~RvA~ 128 (253)
T PF10647_consen 100 GEPVEVDWPGL---RGRITALRVSPDGTRVAV 128 (253)
T ss_pred ceeEEeccccc---CCceEEEEECCCCcEEEE
Confidence 21111211111 116899999999999874
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.16 Score=59.09 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=75.8
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
.+..++.|+..|.|-..|+.+. +.....-..-.++|++++|+.+|. .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999999888764 221111223467999999999999 889999999999999 77888888888888
Q ss_pred CEEEEEeee-cCCccEEEEEEcCCeEEEEEc
Q 002264 496 PVYSICPHH-KENIQFIFSTAIDGKIKAWLY 525 (945)
Q Consensus 496 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~ 525 (945)
+.+++-+.- .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 777765432 334456777777776 4544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.62 E-value=3.6 Score=43.89 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCEEEEEECCCcEEEEECCCCeeEE-EeecCCCC-CCccEEEEcCCCCEEEEEECCCcEE
Q 002264 597 QNHFLAVGEDSQIKFWDMDNVNILT-STDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
+.++++.-..+.|....+..+..+. ....-... ..+..+++.|||.+.++.+.+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3445544456778888876543222 22211222 2688999999999888888788774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.53 E-value=3.8 Score=44.56 Aligned_cols=191 Identities=10% Similarity=0.124 Sum_probs=97.3
Q ss_pred CCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCce--
Q 002264 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA-- 804 (945)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~-- 804 (945)
..+.+-+.||.+.+++-....- ...++. ---..-+.|.+.-..+++++++..+.-|....-.....+..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f-----~~~lp~----~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~ 216 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAF-----SRFLPD----FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ 216 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEE-----EEEcCC----CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence 4567788899999998654221 111221 11123467888888899999998888887643211111000
Q ss_pred --------eeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCee
Q 002264 805 --------TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST 876 (945)
Q Consensus 805 --------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~ 876 (945)
.......-|...-|+. .-.|..+.++.....+++-+..++.+.+. +|......+ .+....
T Consensus 217 ~~~~~~~~~~k~l~~dWs~nlGE~----------~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~kr-Ld~~p~ 284 (418)
T PF14727_consen 217 SGTEQDISSGKKLNPDWSFNLGEQ----------ALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKR-LDYNPS 284 (418)
T ss_pred ccccccccccccccceeEEECCce----------eEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEe-cCCcee
Confidence 0000111233332221 11233344444444555556667777775 455544433 222222
Q ss_pred EEE-e------ecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEE---ecCCcceeeeecCCceEEE
Q 002264 877 FLA-F------HPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA---FSTSLNILVSSGADAQVTL 941 (945)
Q Consensus 877 ~l~-~------s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~---~s~dg~~l~s~~~Dg~i~v 941 (945)
|+. | .+..+..+++++.++++.||.=.+ ++..-+....+| ++. |..-...+++-+.+|.+.+
T Consensus 285 ~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 285 CFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred eEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEE
Confidence 222 1 121123588899999999997433 333222222222 232 2223456777788887765
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.44 E-value=3.4 Score=41.77 Aligned_cols=260 Identities=13% Similarity=0.075 Sum_probs=130.7
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCC------CccccccccCCccccccCcceeeeecccccceeccCCCCCccccc
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAI------GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~------~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~ 705 (945)
-+.++++|.+.+.++....+...+||... ...+.-.+............+.+.|+....+.++..+.
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------- 97 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------- 97 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-------
Confidence 47899999998888888888999999862 11222222211111112234455555444433321110
Q ss_pred cCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC--CCeEEEee
Q 002264 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS--AVGLLALG 783 (945)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~~~~ 783 (945)
.....++-++.||+|.-|...-.........+.+.. .....-...+++... +.+|.++.
T Consensus 98 ------------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaad 158 (336)
T TIGR03118 98 ------------------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAAN 158 (336)
T ss_pred ------------------ccceeEEEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEec
Confidence 011234677888999999853211100011112211 001223345666543 55565554
Q ss_pred -ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccC
Q 002264 784 -SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (945)
Q Consensus 784 -~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~ 861 (945)
.+++|.++|-.-......+......- ..+..-.. +...+..-.|+-..-.++++.=+.+. -|.|-+||+.
T Consensus 159 F~~g~IDVFd~~f~~~~~~g~F~DP~i------PagyAPFn-Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~- 230 (336)
T TIGR03118 159 FRQGRIDVFKGSFRPPPLPGSFIDPAL------PAGYAPFN-VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN- 230 (336)
T ss_pred cCCCceEEecCccccccCCCCccCCCC------CCCCCCcc-eEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-
Confidence 37888888743322111111110000 00000000 00000000111111122222212222 4679999975
Q ss_pred ceEEEEec--CCCCCeeEEEeec-----CCCceEEEeecCceEEEEecccceEEEEecCCC------cceeEEEecC
Q 002264 862 FKVMTTFM--SPPPASTFLAFHP-----QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ------KRITGLAFST 925 (945)
Q Consensus 862 ~~~~~~~~--~h~~~i~~l~~s~-----~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~------~~V~~l~~s~ 925 (945)
+..++++. +.-...+.|+..| -.+.+|+--..||+|..+|..+|+.+..+.... ...+.|+|-.
T Consensus 231 G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 231 GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 67777774 2333456676654 256788888899999999999999888887644 3467888865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.40 E-value=5.5 Score=43.98 Aligned_cols=153 Identities=9% Similarity=0.021 Sum_probs=87.1
Q ss_pred ccEEEEEEecCCCeeEEEEEe--CCCcEEEEeCCCceEEEecCCCCCEEEEEeeecC--CccEEEEEEcCCeEEEEEccC
Q 002264 452 GAVNDLAFAYPNKLLCVVTCG--DDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.+|..++|. ||+. .++|.- .+|.+++=| .+.+ |.-..|..++|.|-. +...+++.-....|.+|.+..
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd--s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD--SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC--ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478899997 6764 444432 223332222 1122 333458889998742 223566777888999998752
Q ss_pred C-----CeeEEecCC---CC--eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC
Q 002264 528 M-----GSRVDYDAP---GH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 528 ~-----~~~~~~~~~---~~--~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
. +.......+ .- --..+.|+|....|++-+. ...-.+++++......+..-...+.|.|.+|.+||
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~----~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA----RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec----CceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 2 111111111 00 1245679999888887764 22334555554332222222334479999999999
Q ss_pred CEEEEEE-CCCcEEEEECCC
Q 002264 598 NHFLAVG-EDSQIKFWDMDN 616 (945)
Q Consensus 598 ~~l~~~~-~dg~i~iwd~~~ 616 (945)
+.|+++- ..=.-++||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 8887754 334567888543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.3 Score=42.21 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=84.6
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.+...++|++|+.+.++...++.-.||-...+.... ..+.+ ..+...+|++++...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------------------~~~~g--~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------------------PVLTG--GSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------------------eeccC--CccccccccCCCCEEEEEc
Confidence 789999999999755555333433444433333221 11222 3788889999988877777
Q ss_pred CCCcEEEEE-ccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEe----CCCc------eEEEecCC
Q 002264 426 TKHLIQLYS-YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWE----LSGR------KLFNFEGH 493 (945)
Q Consensus 426 ~dg~i~vwd-~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd----~~~~------~~~~~~~~ 493 (945)
.+...+++. ..++...........-.+.|.++++||||.++.++.- ..++.|.+=- ..+. ........
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 666677774 2333322111111112228999999999996444442 2345565543 2331 11222233
Q ss_pred CCCEEEEEeeecCCccEEEEEEcC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAID 517 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~d 517 (945)
...+..+.|.. ++.+++.+...
T Consensus 165 ~~~v~~v~W~~--~~~L~V~~~~~ 186 (253)
T PF10647_consen 165 LSDVTDVAWSD--DSTLVVLGRSA 186 (253)
T ss_pred cCcceeeeecC--CCEEEEEeCCC
Confidence 46788999876 44555555443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.36 E-value=4.7 Score=42.94 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=106.7
Q ss_pred EEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeee--cCCccE--EEEEE-cC---CeEEEEEccCCC-eeEEecCC
Q 002264 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH--KENIQF--IFSTA-ID---GKIKAWLYDTMG-SRVDYDAP 537 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~--l~s~~-~d---g~i~iwd~~~~~-~~~~~~~~ 537 (945)
+++...+++-+.+||+.|+.+..+.. +.++.+.+.. .-+|+. |+.++ .+ .+|++|.++... ....+...
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 67777888899999999999988852 3444443321 112222 33443 22 479999886432 22222211
Q ss_pred -------CCeEEEEEE--cC-CCCEEEEEeecCCCCceEEEEeCC---CC----ceeeEeccccCcceEEEEEcCCCCEE
Q 002264 538 -------GHWCTTMLY--SA-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (945)
Q Consensus 538 -------~~~i~~~~~--s~-~~~~l~~~~~~~d~~~~i~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~l 600 (945)
...+..+|+ ++ +|.+.+.... ++|.+..|.+. .+ +.++.|.... .+..+........|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 123556665 33 4665555443 36777777654 33 4567776543 57788888888999
Q ss_pred EEEECCCcEEEEECCC-----CeeEEEeecCCCCCCccEEEEcC--CC-CEEE-EEECCCcEEEEECCCC
Q 002264 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--EG-NLLA-VTTADNGFKILANAIG 661 (945)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~sp--~g-~~l~-~~~~dg~i~iw~~~~~ 661 (945)
+.+-++--|+-|+.+. +..+.......-...|-.+++-. +| .+|+ +.-.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998888888762 22333333333334677777743 33 2444 4444778999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.34 E-value=4.1 Score=48.38 Aligned_cols=157 Identities=12% Similarity=0.082 Sum_probs=93.3
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE-------------EEEeeecCCccEEEEEEc----------CCeEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKA 522 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~i 522 (945)
.++.++.|+.+.-.| .+|+.+..+.. .+.|. .+.-.|.-.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 566788899999999 89998876642 11110 000001001235566642 688999
Q ss_pred EEccCCCeeEEecCC---------CC--------eE-EEEEEcCCCCEEEEEee--------------cCCCCceEEEEe
Q 002264 523 WLYDTMGSRVDYDAP---------GH--------WC-TTMLYSADGSRLFSCGT--------------SKDGDSFLVEWN 570 (945)
Q Consensus 523 wd~~~~~~~~~~~~~---------~~--------~i-~~~~~s~~~~~l~~~~~--------------~~d~~~~i~iwd 570 (945)
+|.++++....+... .+ .+ ..+++.++...++.... ++.-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999988766431 00 01 23455555555544321 011235677788
Q ss_pred CCCCceeeEecc-ccCc-------ceEEEEEcC-CCC---EEEEEECCCcEEEEECCCCeeEEEee
Q 002264 571 ESEGTIKRTYAG-FRKK-------SNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 571 ~~~~~~~~~~~~-~~~~-------~~~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (945)
.++|+..-.++. |++. ...-+.+.. +|+ .++.++.+|.++++|.++|+.+...+
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 889988877765 2210 011122322 442 78888899999999999998877654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.31 E-value=2.1 Score=41.12 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=62.1
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEcc--CCC-----eeEEecC----CCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMG-----SRVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~-----~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
-+.++|..+. -.+.+.-+.+-.|.-||.+ ++. .+..+.. .....-.+++..+|...+++-. .++
T Consensus 160 sNgl~Wd~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~ 234 (310)
T KOG4499|consen 160 SNGLAWDSDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGT 234 (310)
T ss_pred CccccccccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcE
Confidence 3556776432 2455566777788888843 322 2222221 1111234555667777776654 789
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCC-CCEEEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-QNHFLAV 603 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 603 (945)
|...|..+|+.+.++.-... .+++++|... -..+++.
T Consensus 235 V~~~dp~tGK~L~eiklPt~-qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIKLPTP-QITSCCFGGKNLDILYVT 272 (310)
T ss_pred EEEECCCCCcEEEEEEcCCC-ceEEEEecCCCccEEEEE
Confidence 99999999999999887765 7888888643 2344443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.061 Score=51.18 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=59.9
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE-EEEcCCCCEEEEEECCCcEEEEEccCC
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-i~~s~~g~~las~~~dg~i~vwd~~~~ 438 (945)
+++|+.+|.|.+|++....... .....-...|.+ |.--.++.+..+++.||.|+.|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~------------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHS------------------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHH------------------HhhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 7889999999999986322211 011112223333 333345668889999999999999877
Q ss_pred cccccceeecccc-ccEEEEEEecCCCeeEEEEE--eCCCcEEEEe
Q 002264 439 NDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE 481 (945)
Q Consensus 439 ~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~--s~d~~i~vwd 481 (945)
+.+. ....|. .++.....+..+. .++.+ |.|..++.|+
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWN 175 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcc
Confidence 6554 333455 4555555554455 44444 5566666666
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.16 E-value=4 Score=40.92 Aligned_cols=185 Identities=8% Similarity=0.035 Sum_probs=112.7
Q ss_pred CccEEEEEEcCCCCEEEEEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
..-...+.|..+|.++-+.+.-| .|+.+|+.+|+..+.. .+.. .---..++.. ++. +..-.=.++...+|| .
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~-~~FgEGit~~--~d~-l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP-RYFGEGITIL--GDK-LYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT-T--EEEEEEE--TTE-EEEEESSSSEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc-cccceeEEEE--CCE-EEEEEecCCeEEEEccc
Confidence 34455788878888888887766 6999999998765432 2221 1122334443 232 333344688899999 6
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC--CC---eEEEEEEcCCCCEEEEEe
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GH---WCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~---~i~~~~~s~~~~~l~~~~ 557 (945)
+-+.+.++.- .+.=+.++. +++.|+.......+..+|..+.+....+... +. .++.+.|- +|. +.+.-
T Consensus 119 tl~~~~~~~y-~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANV 191 (264)
T PF05096_consen 119 TLKKIGTFPY-PGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANV 191 (264)
T ss_dssp TTEEEEEEE--SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEE
T ss_pred cceEEEEEec-CCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEe
Confidence 7777777753 345667762 4566777777888999998877766654433 22 45666665 454 44433
Q ss_pred ecCCCCceEEEEeCCCCceeeEecc-----------c---cCcceEEEEEcCCCCEEEEEEC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAG-----------F---RKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
. ....|...|..+|+....+.. . .....+.+++.|..+.|++.|.
T Consensus 192 W---~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 192 W---QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp T---TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred C---CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 3 366788999999998776531 0 1236888999998888777764
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.6 Score=42.25 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=82.8
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
...+.+++|+|+.+.|++... ...-.++=..+|+.++++.-..-.....+.+..++.++++--.++.++++.+...
T Consensus 85 ~~nvS~LTynp~~rtLFav~n----~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTN----KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccceeeCCCcceEEEecC----CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345899999999999999874 4444555556788888776443334556778777766666667889999887765
Q ss_pred eeEEEe-----ec--CCC-CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 618 NILTST-----DA--EGG-LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 618 ~~~~~~-----~~--~~~-~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+..+ .. ..+ ....-.++|+|..+.|..+-+-.-+.|+....+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 322211 11 111 235678999999888888888888888877643
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.99 E-value=7.1 Score=42.92 Aligned_cols=311 Identities=13% Similarity=0.063 Sum_probs=149.9
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
-...|.++.|...|. +-.|+.||- ..||..+++.+.... .....+|..+.-+-.|+ |-
T Consensus 163 ~d~~V~aLv~D~~g~--lWvgT~dGL-~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-LW 220 (671)
T COG3292 163 KDTPVVALVFDANGR--LWVGTPDGL-SYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-LW 220 (671)
T ss_pred cCccceeeeeeccCc--EEEecCCcc-eEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-EE
Confidence 455899999999996 566777764 567877776653210 01124566666555555 45
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE-EEecCC--CCCEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGH--EAPVYS 499 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~--~~~v~~ 499 (945)
+|+.+| |.+.+..+..... . -..-..+.|..+.-..+|. +-.|+..|..+.=-...... ...+.| -+.|.+
T Consensus 221 VGTdqG-v~~~e~~G~~~sn-~-~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vns 294 (671)
T COG3292 221 VGTDQG-VYLQEAEGWRASN-W-GPMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNS 294 (671)
T ss_pred EEeccc-eEEEchhhccccc-c-CCCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCccccccc
Confidence 566666 7777766521111 0 0011233444444444444 44455454332211222211 111222 223444
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC--CCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
+.. +.+| -+-+++.+|.+++-+-+-..........+..+...+..| .+..+-... ..+.+.+-+-.++..+
T Consensus 295 L~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~v 367 (671)
T COG3292 295 LWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGELV 367 (671)
T ss_pred eee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcEE
Confidence 433 3343 366677776665433211111111111111111122222 111111111 1334555555667666
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
+.........++.+++..+ ..+-.|+...-+..|+..+ +......... ..++|..+.=.|+++ |..|+.+|.++.
T Consensus 368 ~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~- 443 (671)
T COG3292 368 RSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR- 443 (671)
T ss_pred EEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec-
Confidence 6655555556776777764 4566666554455566655 3333333222 234788888889888 778888876654
Q ss_pred ECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
+.+.+ +....+.........+.+..+.+.|+|+.-+
T Consensus 444 ~pe~~-~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~ 479 (671)
T COG3292 444 DPESG-RVLNLLNPGSHGLDGSRVEQLGLGPDGRLWL 479 (671)
T ss_pred Ccccc-chhcccccccCcCCcchhhhhccCCCCceEE
Confidence 33322 2222222111111223366777888887654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.82 E-value=8.1 Score=42.77 Aligned_cols=115 Identities=8% Similarity=0.027 Sum_probs=69.0
Q ss_pred CeEEEEEEcCC----C-CEEEEEeecCCCCceEEEEeCC-----CCceeeEeccccCcc----eEEEEEcCCCCEEEEEE
Q 002264 539 HWCTTMLYSAD----G-SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 539 ~~i~~~~~s~~----~-~~l~~~~~~~d~~~~i~iwd~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~ 604 (945)
..|..+.|.|- . .+|++-. ...|.+|.+. .++.+..-..+-... ...+.|+|....|++-.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQH-----kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQH-----KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEec-----cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 46889999985 3 3444443 7889999875 223332222211111 23467999988887766
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-CcEEEEECC
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANA 659 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-g~i~iw~~~ 659 (945)
....-.++++......-..+.. ..+-|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5544445565543332223322 23479999999999988776433 345788764
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.68 E-value=5.3 Score=40.03 Aligned_cols=185 Identities=16% Similarity=0.057 Sum_probs=112.1
Q ss_pred ccEEEEEEecCCCeeEEEEEeCCC--cEEEEe-CCCceEEEecCC-CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.-...+.|..+|. ++-|.|.-| .|+.+| .+|+.+....-. .-.--.++.. ++++..-.=.++...+||.++
T Consensus 45 aFTQGL~~~~~g~--LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 45 AFTQGLEFLDDGT--LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp -EEEEEEEEETTE--EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEESSSSEEEEEETTT
T ss_pred ccCccEEecCCCE--EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEecCCeEEEEcccc
Confidence 3466788877887 777777766 788999 788766544321 2222334432 224555566788999999998
Q ss_pred CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEE
Q 002264 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 603 (945)
.+....+.... .-..++ .|++.|+..- |...|+.+|..+.+..+.+....+ ..++-+.+- +|...+=.
T Consensus 120 l~~~~~~~y~~-EGWGLt--~dg~~Li~SD----GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV 191 (264)
T PF05096_consen 120 LKKIGTFPYPG-EGWGLT--SDGKRLIMSD----GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV 191 (264)
T ss_dssp TEEEEEEE-SS-S--EEE--ECSSCEEEE-----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred ceEEEEEecCC-cceEEE--cCCCEEEEEC----CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence 88877776653 334455 5666666542 578999999998887776654322 124445554 34333333
Q ss_pred ECCCcEEEEECCCCeeEEEeecC---------C----CCCCccEEEEcCCCCEEEEEEC
Q 002264 604 GEDSQIKFWDMDNVNILTSTDAE---------G----GLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~---------~----~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
=....|...|..+|+....+... . ...-.+.+|+.|....+.+.+.
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 46677888899999988876431 0 1234789999997666655553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.59 E-value=5.9 Score=40.14 Aligned_cols=204 Identities=13% Similarity=0.102 Sum_probs=117.3
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEeCC-----Cc---eEEEecC-----CCCCEEEEEeeecCC----------cc
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-----GR---KLFNFEG-----HEAPVYSICPHHKEN----------IQ 509 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~-----~~---~~~~~~~-----~~~~v~~~~~~~~~~----------~~ 509 (945)
.-+.|+++|.+. +-++...-+...+||.. +. .+..+.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999988 77777778899999933 21 2333331 123566676653221 12
Q ss_pred EEEEEEcCCeEEEEEccCCCe-----eEEecCC--CCeEEEEEEcC--CCCEEEEEeecCCCCceEEEEeCCCCceee--
Q 002264 510 FIFSTAIDGKIKAWLYDTMGS-----RVDYDAP--GHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTIKR-- 578 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~--~~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~-- 578 (945)
.++.+++||+|.-|....... ...+... ......+++.. .+.+|+.+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 467889999999997433222 1222211 22334455543 4667776654 47889999854332210
Q ss_pred Eecccc---C-cceEEEEE-----------cCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC----
Q 002264 579 TYAGFR---K-KSNGVVQF-----------DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---- 639 (945)
Q Consensus 579 ~~~~~~---~-~~~~~~~~-----------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---- 639 (945)
.|.... . .+.....+ .++...=+.|..-|.|-+||+ .|..++.+...+.-..-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 011000 0 00111111 111112222334578999997 577777776555445567788766
Q ss_pred --CCCEEEEEECCCcEEEEECCCCc
Q 002264 640 --EGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 640 --~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
.|.+|+---.||+|..||..++.
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCc
Confidence 46777777779999999998884
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.96 Score=51.44 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=74.4
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEc-----
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY----- 525 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~----- 525 (945)
.+.-+.-|.-++ ..+.-+....+.||| ..+.....-. ...+.|.++.|...++|+.+++.|..+.|.+|--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344454555555 333444456799999 5555332211 3578899999999999999999999999999842
Q ss_pred cCCC----eeEE--ecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 526 DTMG----SRVD--YDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 526 ~~~~----~~~~--~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
.... .+.. +.. ..++|....|.++|..++.+ .+.+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s------GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS------GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe------CCEEEEECCC
Confidence 1111 1111 222 34688999999999887766 4578888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.1 Score=49.60 Aligned_cols=151 Identities=9% Similarity=0.007 Sum_probs=70.5
Q ss_pred CccEEEEEEcC-----CeEEEEEccCCCeeEEecCCCCe-EEEEEEcCCCCEEEEEeecCCC--CceEEEEeCCCCceee
Q 002264 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKR 578 (945)
Q Consensus 507 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~~d~--~~~i~iwd~~~~~~~~ 578 (945)
++.+++.||.+ ..+..||..+..-...-..+... -.+++ .-+++..+.+|....+ -..+..||+.+.+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 44677777765 24667776654322211111111 11122 2355666666532211 2568899988765433
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECC--------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.-..... .....+...++..++.||.+ ..+.+||..+++-...-...........+.+ ++++++.|+.+
T Consensus 421 ~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 497 (534)
T PHA03098 421 GSPLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK 497 (534)
T ss_pred cCCCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence 2211111 11111222345566666532 2388889887654432211111001112222 66777777654
Q ss_pred -----CcEEEEECCCC
Q 002264 651 -----NGFKILANAIG 661 (945)
Q Consensus 651 -----g~i~iw~~~~~ 661 (945)
..+.++|..+.
T Consensus 498 ~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 498 YEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceeEEEeCCCC
Confidence 35667776654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.32 E-value=9.2 Score=45.09 Aligned_cols=98 Identities=7% Similarity=0.121 Sum_probs=58.8
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
.-.|..|.+||+|++||..|..| |.|..+... ......+.+-...|.|=.+.-+.. ++ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~--~~-~--------------- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--WGKNGEFEDGKKEINCRTVPVDER--FF-T--------------- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--cCccccccCCCcceeEEEEEechh--hc-c---------------
Confidence 45799999999999999998876 555544321 000001222333343333332222 11 1
Q ss_pred eEEEecCCCCCEEEEEeeecC-CccEEEEEEcCCeEEEEEccCCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMG 529 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 529 (945)
..+...|..+.|+|.. ++..|+.-..|+++|+||+....
T Consensus 143 -----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 143 -----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1234567788888864 35678888889999999986543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.28 E-value=6.1 Score=41.97 Aligned_cols=117 Identities=11% Similarity=0.199 Sum_probs=78.3
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
...++|.++.||+|.+ +||+--.|.+|.+.+....+...... ...+..+..|....|+.+ .-+
T Consensus 64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~ 126 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEI 126 (657)
T ss_pred cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeE
Confidence 3667999999999999 79999899999999985443321100 112224456889999876 666
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
|.-...| +-+|.+...+ +.....+.|+..|.-..|+++..-.+++|+-..+++.
T Consensus 127 A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln 180 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN 180 (657)
T ss_pred EEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence 6666655 7788765432 2222455788899999999998853344443444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.28 E-value=8.7 Score=43.74 Aligned_cols=177 Identities=9% Similarity=0.076 Sum_probs=88.8
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccce-eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
.+..+.||.+..+|+ ...+|++++|++.. +.+.... -.......|..+.|..+|= .+. ..+|.+.+-+ ....
T Consensus 85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV--avl--t~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV--AVL--TVSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEEE-EeccceEEEeecch-hhhcccccccccccCceeEEEEecCce--EEE--ecCCcEEEEcCCCcc
Confidence 788999997766554 56899999999864 3232210 1122334566677766653 333 3355665555 3332
Q ss_pred eEEEecCC-CCCEEEEEeeecCC---ccEEEEEE-cCCeEEEEEccCCC-eeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 486 KLFNFEGH-EAPVYSICPHHKEN---IQFIFSTA-IDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 486 ~~~~~~~~-~~~v~~~~~~~~~~---~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.+.++..- .....+.+|.-..+ ...++-.. ..+ ..++...... ....+......+..++.||+.++|+--..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 33333321 11111122221111 11111111 000 0111111111 11122333456888999999999988775
Q ss_pred CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
.|.|.+-+....+....+..........++|..
T Consensus 237 ---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred ---CCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 788888887776666665533322222344543
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.06 E-value=17 Score=43.25 Aligned_cols=100 Identities=12% Similarity=0.222 Sum_probs=59.3
Q ss_pred eecCCCceEEecCCCeEEEEeccCceEEEEecC--CCCCeeEEEeecCCCceEEEeecCceEEE--EecccceEEEEecC
Q 002264 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHI--YNVRVDEVKSKLKG 913 (945)
Q Consensus 838 ~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~~~~~~lasg~~dg~v~v--wd~~~~~~~~~l~~ 913 (945)
|+.|-..++.+|-...+++||+...++++..+- -...|+.+++- +..+++|...-+|.. |+-+..+ +..+-+
T Consensus 940 Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~-l~~fad 1015 (1205)
T KOG1898|consen 940 AICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQ-LIVFAD 1015 (1205)
T ss_pred EEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCe-EEEEeC
Confidence 445766677777788899999987777665442 24557888774 456777776666655 4433333 333322
Q ss_pred --CCcceeEEEecCCcceeeeecCCceEEEE
Q 002264 914 --HQKRITGLAFSTSLNILVSSGADAQVTLC 942 (945)
Q Consensus 914 --h~~~V~~l~~s~dg~~l~s~~~Dg~i~vW 942 (945)
-...|+++.+- |-..++.+..=|.+.+-
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEE
Confidence 22346666555 33456655555554443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=2.7 Score=48.66 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=88.2
Q ss_pred CCCCEEEEEECCC------cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CC
Q 002264 416 PDGNYVGVAFTKH------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LS 483 (945)
Q Consensus 416 ~~g~~las~~~dg------~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~ 483 (945)
.++..++.||.++ .+..||..+++-.. ...+.........+.+ ++. +++.||.+ ..+..|| .+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~--~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF--NNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE--CCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3566667776542 47788877654322 1122211222222222 455 66667765 3466788 44
Q ss_pred CceEEEecCCCCCE--EEEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 484 GRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 484 ~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
++- ........+. .+++. . ++.+.+.||.+ ..+..||..+..-...-..+.......+...+++..+.
T Consensus 368 ~~W-~~~~~lp~~r~~~~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKW-REEPPLIFPRYNPCVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred Cce-eeCCCcCcCCccceEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 332 2221111111 11121 1 44677777632 35778887654322211111111111122235555566
Q ss_pred EeecCCC----CceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCee
Q 002264 556 CGTSKDG----DSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNI 619 (945)
Q Consensus 556 ~~~~~d~----~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 619 (945)
+|..... -..+.+||..+.+....-.... ......+.+ ++..++.||.+ +.+.+||..+..-
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 6542111 1248899988765443211111 101122222 56666666643 4678888776654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.88 E-value=5.7 Score=46.81 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=27.2
Q ss_pred CccEEEEcCC---CCEEEEEECCCcEEEEECCCCcccc
Q 002264 631 NLPRLRFSKE---GNLLAVTTADNGFKILANAIGLRSL 665 (945)
Q Consensus 631 ~v~~v~~sp~---g~~l~~~~~dg~i~iw~~~~~~~~~ 665 (945)
.|..+.|+|. +..|++-..|+++|+||+.......
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCe
Confidence 5778888884 5788888899999999997654333
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.74 E-value=8.5 Score=38.79 Aligned_cols=170 Identities=10% Similarity=0.080 Sum_probs=99.9
Q ss_pred eccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC-CCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 447 ~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
+.+-...+.++.|+|+.+ .|++......-.||= .+|+.+.++.-. -...-.|.+. ++|++.++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI--GGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe--cCCEEEEEehhcceEEEEE
Confidence 335555699999999999 455555555555666 999988776421 1122334443 3567888877888888887
Q ss_pred ccCCCeeEEecC---------C-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc--e-eeEeccccC------
Q 002264 525 YDTMGSRVDYDA---------P-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--I-KRTYAGFRK------ 585 (945)
Q Consensus 525 ~~~~~~~~~~~~---------~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~-~~~~~~~~~------ 585 (945)
++.......... + ......++|.|....|+.+-. ..-+.+|...... . ......+..
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE----r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE----RNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc----cCCcEEEEEecCCcccccccccCcccccceEe
Confidence 766543332111 1 335778999999988888753 3445555443221 1 111111111
Q ss_pred cceEEEEEcCCCCE-EEEEECCCcEEEEECCCCeeEEEeec
Q 002264 586 KSNGVVQFDTTQNH-FLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 586 ~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
..+..+.|++..+. ++.+.+++.+.-.|... ..+..+..
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL 272 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSL 272 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEe
Confidence 13566778775544 44455777777777654 43554443
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.46 E-value=2.2 Score=44.98 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=84.1
Q ss_pred CccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCcee-EEeecC
Q 002264 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP-CIALSK 841 (945)
Q Consensus 763 ~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~l~~s~ 841 (945)
-...+..+-..|||+.+...+. .++.++++........+ +-+..-|.. ...|+ ++..-.
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk---------l~~dspg~~----------~~~Vte~l~lL~ 278 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK---------LVDDSPGDS----------RHQVTEQLYLLS 278 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhh---------hhhcCCCch----------HHHHHHHHHHHh
Confidence 3456788899999998877666 67888887654322110 111111110 01111 111122
Q ss_pred CCceEEecC-CCeEEEE-eccCc-----eEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCC
Q 002264 842 NDSYVMSAT-GGKISLF-NMMTF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 914 (945)
Q Consensus 842 dg~~la~~s-d~~i~iw-d~~~~-----~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 914 (945)
.|.-+.+++ ||-|.-| |+..+ ..++.++-...++..+.--. +.+-+++-+.+|++.++.....+.+-.-. -
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~ 356 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-A 356 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-h
Confidence 344444444 7776655 43321 12223332223444444333 45567777788888877644433322211 1
Q ss_pred CcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 915 QKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 915 ~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
-..+.-+++||.+.+|++-.. |.++++.+
T Consensus 357 ~~~~~~~~~Sp~~~~Ll~e~~-gki~~~~l 385 (733)
T COG4590 357 YQAPQLVAMSPNQAYLLSEDQ-GKIRLAQL 385 (733)
T ss_pred hcCcceeeeCcccchheeecC-CceEEEEe
Confidence 235667899999999996543 45777665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.15 E-value=8.2 Score=43.96 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=100.9
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe----cCCCCCEEEEEe
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEAPVYSICP 502 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~~~~~v~~~~~ 502 (945)
--.|+|++..+ ..+. .+.-..+.+..+.|+.+.. |+....||++.+|+..|..+... ......|..+.+
T Consensus 63 ~~~I~If~~sG-~lL~---~~~w~~~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNISG-QLLG---RILWKHGELIGMGWSDDEE---LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEeccc-cchH---HHHhcCCCeeeecccCCce---EEEEeccceEEEeecchhhhcccccccccccCceeEEEE
Confidence 34588998764 4443 2222334788999998775 67778899999999766655442 112233444444
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeE--EEEEEcCCCC---EEEEEeecCCCCceEEEEeCCCCc-
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWC--TTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT- 575 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i--~~~~~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~- 575 (945)
.. +| ++.-..+|.+.+-+-........+.. +.... .+-+..++++ .++-... .-...++......
T Consensus 136 f~--~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~----~v~~~~~q~~~~~~ 207 (829)
T KOG2280|consen 136 FH--NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV----AVGLHICQVEESRV 207 (829)
T ss_pred ec--Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech----hhhhcccceecccc
Confidence 33 33 44444555554432111111111111 11111 2222222221 1111100 0000111111111
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
....+.... ..+..+.+||+.++|+.-..+|.|.+-+.+..+....+....+. +-..++|..+
T Consensus 208 q~~~~~~~~-~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 208 QLHALSWPN-SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred cccccCCCC-ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence 111111111 24667889999999999999999999998888877777654432 2235666543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.7 Score=51.34 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=64.5
Q ss_pred ceeEEeecCCCc--eEEecCCCeEEEEeccCceE-EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEE
Q 002264 833 AVPCIALSKNDS--YVMSATGGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (945)
Q Consensus 833 ~i~~l~~s~dg~--~la~~sd~~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~ 909 (945)
...++.|.|.-. .+++-.|+.|+|.-+.-... +..+. .....+|++|+| .|+.+++|...|++.-|... ++...
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~ 233 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKS 233 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceee
Confidence 345566666432 33333488888887653222 22222 455689999999 99999999999999888743 44333
Q ss_pred EecC----CCcceeEEEecCCcceeee
Q 002264 910 KLKG----HQKRITGLAFSTSLNILVS 932 (945)
Q Consensus 910 ~l~~----h~~~V~~l~~s~dg~~l~s 932 (945)
.+.+ ....|.+|+|...-.+|++
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEE
Confidence 3322 2468999999977777765
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.00 E-value=28 Score=42.50 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=17.0
Q ss_pred CccceEEEEEecCCCeEEEeeec
Q 002264 763 TSSKVVRLLYTNSAVGLLALGSN 785 (945)
Q Consensus 763 ~~~~v~~l~~s~dg~~l~~~~~d 785 (945)
+-..+.+++++|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 56678899999999866654333
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=15 Score=39.27 Aligned_cols=278 Identities=10% Similarity=0.048 Sum_probs=132.2
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
...+.+|+|..... .+|+|. +|. ||...+ |+.-.. ... .+......+.++.|.++ ..++
T Consensus 45 ~~~l~~v~F~d~~~-g~avG~-~G~--il~T~DgG~tW~~--------~~~-------~~~~~~~~l~~v~~~~~-~~~~ 104 (334)
T PRK13684 45 EANLLDIAFTDPNH-GWLVGS-NRT--LLETNDGGETWEE--------RSL-------DLPEENFRLISISFKGD-EGWI 104 (334)
T ss_pred CCceEEEEEeCCCc-EEEEEC-CCE--EEEEcCCCCCceE--------Ccc-------CCcccccceeeeEEcCC-cEEE
Confidence 45889999986655 477775 453 454433 332211 000 01112234778888654 3444
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~ 501 (945)
+| ..|.|.. .-+.|+.-.....-....+....+.....+. .++. +..|.|..=+..|+.-..+. .-...+.++.
T Consensus 105 ~G-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~-g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~ 179 (334)
T PRK13684 105 VG-QPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEMA-TNVGAIYRTTDGGKNWEALVEDAAGVVRNLR 179 (334)
T ss_pred eC-CCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ceee-eccceEEEECCCCCCceeCcCCCcceEEEEE
Confidence 43 4553322 3344444332211000111122222222232 2333 33454433223343322222 2245677787
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeE--EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 579 (945)
+.+ ++.++ ..+..|.+..- .+.+.... ........++++.+.++++.++++. .+.+++=....+..-..
T Consensus 180 ~~~--~g~~v-~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 180 RSP--DGKYV-AVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSK 250 (334)
T ss_pred ECC--CCeEE-EEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCcccc
Confidence 755 44444 55556655421 12222211 1223345788999999998877654 45554322333332221
Q ss_pred eccc---cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec-CCCCCCccEEEEcCCCCEEEEEECCCcEEE
Q 002264 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (945)
Q Consensus 580 ~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~l~~~~~dg~i~i 655 (945)
.... ....+..+.+.+++. +++++.+|.+. ...+.++.-..... ..-......+.|..+++.++ .+..|.|.-
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEE
Confidence 1111 122466788888765 55566677665 34555554444432 11112467777776666655 456777776
Q ss_pred EEC
Q 002264 656 LAN 658 (945)
Q Consensus 656 w~~ 658 (945)
++-
T Consensus 328 ~~~ 330 (334)
T PRK13684 328 YVG 330 (334)
T ss_pred ecC
Confidence 653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.2 Score=50.78 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=75.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc--CCCCEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS--PDGNYVGV 423 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s--~~g~~las 423 (945)
.++-+.-|.-++ +.++.+...++.|||...+....+. .+ ...+.|.++.|. |+|+.+++
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~-----------------~f-~~~~~I~dLDWtst~d~qsiLa 91 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEE-----------------SF-SEDDPIRDLDWTSTPDGQSILA 91 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEee-----------------ee-cCCCceeeceeeecCCCCEEEE
Confidence 455555566666 4555555568999999887755431 12 356789999996 48888888
Q ss_pred EECCCcEEEEEcc------CC---cccccceeecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 424 AFTKHLIQLYSYA------GS---NDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 424 ~~~dg~i~vwd~~------~~---~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
.|..+.|.+|.-. .+ ..++.+ .+..|+ .+|.+..|.++|. ++.|+ ++.+.|+|
T Consensus 92 VGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i-~i~~~T~h~Igds~Wl~~G~---LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 92 VGFPHHVLLYTQLRYDYTNKGPSWAPIRKI-DISSHTPHPIGDSIWLKDGT---LVVGS-GNQLFVFD 154 (631)
T ss_pred EEcCcEEEEEEccchhhhcCCcccceeEEE-EeecCCCCCccceeEecCCe---EEEEe-CCEEEEEC
Confidence 8899999998531 11 112222 234455 6899999999997 44444 56788888
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.26 Score=56.15 Aligned_cols=126 Identities=16% Similarity=0.263 Sum_probs=80.2
Q ss_pred CCCcEEEEEEe----CCCCeEEEEEeCcCcEEEEEcC--CCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 343 QGSTVISMDFH----PSHQTLLLVGSSNGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 343 h~~~V~~v~fs----p~g~~llasgs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
..++|-.++|- |.+. -.-|...||++. .|+......+ +....-...+.-|.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v--------------~~~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEV--------------TPITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEE--------------eecCcCCCCcceeeecc
Confidence 45567777774 3333 123677889875 3443322111 11222233445566665
Q ss_pred ---CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEE-----------EecCCCeeEEEEEeCCCcEEEEe-
Q 002264 417 ---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA-----------FAYPNKLLCVVTCGDDKLIKVWE- 481 (945)
Q Consensus 417 ---~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~~~l~s~s~d~~i~vwd- 481 (945)
+..++..+-.++.|++.+++.... ..+.+|...+..++ .||||. .|+.+..||.++.|-
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 667888888899999988876432 13556887777665 489999 899999999999887
Q ss_pred -CCCc----eEEEecCCC
Q 002264 482 -LSGR----KLFNFEGHE 494 (945)
Q Consensus 482 -~~~~----~~~~~~~~~ 494 (945)
..|+ +++.++.|+
T Consensus 265 yi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeccccHhhhhccCCCC
Confidence 5664 455666676
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.28 E-value=3.1 Score=45.23 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=55.7
Q ss_pred CcEEEEEEeCCCCeEEEEEe-----------CcC-cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGS-----------SNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
.....|+|.++|+ |+++-. ..+ .|.+++-.++.-... +..++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 3678899999998 555432 223 677776543321110 001232233456789
Q ss_pred EEcCCCCEEEEEECCCcEEEE-EccCCc----ccccc-eeecc----ccccEEEEEEecCCCeeEEEEE
Q 002264 413 AWSPDGNYVGVAFTKHLIQLY-SYAGSN----DLRQH-SQIDA----HVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vw-d~~~~~----~~~~~-~~~~~----h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
++.++| .++ ++... |..| +.+... ..+.+ ..+.. +......++|.|||.. ++..+
T Consensus 78 ~~~~~G-lyV-~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv~~G 142 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YFNHG 142 (367)
T ss_pred eEecCC-EEE-eCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EEecc
Confidence 999999 444 44443 4433 443211 11111 11221 2345778999999972 44444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.10 E-value=12 Score=43.41 Aligned_cols=165 Identities=11% Similarity=0.130 Sum_probs=94.6
Q ss_pred CCeEEEEEeCcCcEEEEEcCCCCccccc-ccccccccccCccccccccc--CCCccEEEEEEcC--CCCEEEEEECCCcE
Q 002264 356 HQTLLLVGSSNGEITLWELAMRDRLVSK-PFKIWDMAACSLPFQASIFK--DVPISVSRVAWSP--DGNYVGVAFTKHLI 430 (945)
Q Consensus 356 g~~llasgs~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~h~~~V~~i~~s~--~g~~las~~~dg~i 430 (945)
+. +|+++. .+.|.||+...-...... +.-................. .-...|+.|.... +...|+.|..||.|
T Consensus 49 ~n-~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RN-LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CC-EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeE
Confidence 44 566654 789999998654442210 01000111000000000010 0223566666655 56689999999999
Q ss_pred EEEEccC-------C----------cccccceeeccccccEEEEEEe--cCCCeeEEEEEeCCCcEEEEe--CC-CceE-
Q 002264 431 QLYSYAG-------S----------NDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCGDDKLIKVWE--LS-GRKL- 487 (945)
Q Consensus 431 ~vwd~~~-------~----------~~~~~~~~~~~h~~~v~~l~~s--~~~~~~~l~s~s~d~~i~vwd--~~-~~~~- 487 (945)
.+|.+++ . ..+++...+. -...++++++. .... ++|.++....|.||- .. .+..
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r--lIAVSsNs~~VTVFaf~l~~~r~~~ 203 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR--LIAVSSNSQEVTVFAFALVDERFYH 203 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--EEEEecCCceEEEEEEecccccccc
Confidence 9997631 0 0111222222 34578999998 5555 788888888888887 32 2211
Q ss_pred EEecCCCCCEEEEEeeecCC---cc-EEEEEEcCCeEEEEEc
Q 002264 488 FNFEGHEAPVYSICPHHKEN---IQ-FIFSTAIDGKIKAWLY 525 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~---~~-~l~s~~~dg~i~iwd~ 525 (945)
..-..+...|.+|+|.+... |. .+++++-.|.+.+|++
T Consensus 204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11113566788999877542 22 7888999999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.48 Score=32.04 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=26.3
Q ss_pred CcEEEEEEeCCCC--eEEEEEeCcCcEEEEEcCC
Q 002264 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAM 376 (945)
Q Consensus 345 ~~V~~v~fsp~g~--~llasgs~dg~i~iwd~~~ 376 (945)
+.|.+|+|||... -||+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999997543 4788888789999999985
|
It contains a characteristic DLL sequence motif. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=9.1 Score=43.37 Aligned_cols=148 Identities=11% Similarity=0.030 Sum_probs=69.1
Q ss_pred CccEEEEEEcC--CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 507 NIQFIFSTAID--GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 507 ~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
++.+.+.||.+ ..+..||..+..-...-..+..........-+|+..+.||.+. ....+..||..+.+....-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCC
Confidence 45677777754 3577787654322221111111111112223566666666422 23567789988765443211111
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECC
Q 002264 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANA 659 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~ 659 (945)
. .....+..-++...+.| |.+.+||..+++-...-......... +++ --+|+..++||.+ ..+..||..
T Consensus 397 ~-r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 P-HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred c-cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECC
Confidence 1 11111222334444444 35778888776544332222111112 222 2267777888754 245566665
Q ss_pred CC
Q 002264 660 IG 661 (945)
Q Consensus 660 ~~ 661 (945)
++
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 44
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=7.3 Score=44.15 Aligned_cols=186 Identities=10% Similarity=-0.063 Sum_probs=80.3
Q ss_pred CCCEEEEEECCC-----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC--CcEEEEe-CCCceEE
Q 002264 417 DGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLF 488 (945)
Q Consensus 417 ~g~~las~~~dg-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd-~~~~~~~ 488 (945)
++..+++||.++ .+..||..++.-.. ...+.........+ .-++. +.+.||.+ .++..|| .+++- .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v--~~~~~--iYviGG~~~~~sve~ydp~~n~W-~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV--PANNK--LYVVGGLPNPTSVERWFHGDAAW-V 344 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE--EECCE--EEEECCcCCCCceEEEECCCCeE-E
Confidence 355566676543 46778877654221 11222111112222 23555 56667653 4577888 44432 2
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.+..-..+....+...- +|.+.+.||.++ .+..||.++..-...-..........+..-+++..+.|+ .
T Consensus 345 ~~~~l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG-------~ 416 (480)
T PHA02790 345 NMPSLLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR-------N 416 (480)
T ss_pred ECCCCCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC-------c
Confidence 22221111111111111 457777777654 466787665432221111111111111223444444432 3
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNV 617 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 617 (945)
+.+||..+.+....-.-.....-..++ .-+++..++||.+ ..+..||..++
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 677888776554322111110111122 2245666666643 23455555443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.17 Score=57.48 Aligned_cols=145 Identities=12% Similarity=0.047 Sum_probs=77.8
Q ss_pred CCCcccccceeecCCcceee-ecCCCCCCccceEEEEEe---cCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccc
Q 002264 736 DKPKPWQLAEIVDSGQCRLV-TMPESTDTSSKVVRLLYT---NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ 811 (945)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s---~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 811 (945)
|...+|++.-....-++... .... .....+.-+.|. ++..++..+-.++++++..+.+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~--p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~------------- 217 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPIT--PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR------------- 217 (1283)
T ss_pred hhhheeehHhhccccccceEEeecC--cCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-------------
Confidence 67788887642211111111 1111 122233444444 4566677777788998876543221
Q ss_pred cccCCCcccccccccCCCcCCceeEEe-----------ecCCCceEEecC-CCeEEEEe-----ccCceEEEEecCCCC-
Q 002264 812 HWLPSSGLLMANDVAGVNLEEAVPCIA-----------LSKNDSYVMSAT-GGKISLFN-----MMTFKVMTTFMSPPP- 873 (945)
Q Consensus 812 ~~~~~~~~~~~~~l~~~~~~~~i~~l~-----------~s~dg~~la~~s-d~~i~iwd-----~~~~~~~~~~~~h~~- 873 (945)
..+.+ |+.+++.++ +||||+.+|.+. ||.++.|- .....++...+.|++
T Consensus 218 -----------~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 218 -----------SLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred -----------HHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 01112 333333332 689999999998 88766554 444566777788874
Q ss_pred CeeEEEeecC------CC--ceEEEee-cCceEEEEecccceEE
Q 002264 874 ASTFLAFHPQ------DN--NIIAIGT-EDSTIHIYNVRVDEVK 908 (945)
Q Consensus 874 ~i~~l~~s~~------~~--~~lasg~-~dg~v~vwd~~~~~~~ 908 (945)
+-.|.-|..+ -+ .++++++ .+..+++|.-...+|+
T Consensus 285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3334334321 01 2333443 3456899987777666
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.4 Score=41.89 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.5
Q ss_pred ccEEEEEEcCCC------CEEEEEECCCcEEEEEccC
Q 002264 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 407 ~~V~~i~~s~~g------~~las~~~dg~i~vwd~~~ 437 (945)
..|.+++|||.| .+||+.+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999953 4788889999999997653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.95 E-value=4.6 Score=38.21 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=81.5
Q ss_pred CccEEEEEEcCC--eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 507 NIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 507 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
+|.++.+.+.-| .|++||+.+++...........+..=-...-|.++..-.. +++.-..+|..+.+.+..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 446676666544 6899999988887765554222221112223444444443 47888899998888777665433
Q ss_pred CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC---CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG---LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
. -+.+ ..++..++.+.....++.-|..+......+..... ...++.+.|- ||...|-.-.+..|...+.++|
T Consensus 132 e--GWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 E--GWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred c--ceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 2 2333 34555677776666777777766544443322211 1223344443 4555554444445555555555
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.90 E-value=4.5 Score=43.56 Aligned_cols=136 Identities=11% Similarity=0.109 Sum_probs=83.6
Q ss_pred EEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC--------CEEEEEeecCCCCceEEEEeCCC-CceeeEecc-
Q 002264 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--------SRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAG- 582 (945)
Q Consensus 513 s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~--------~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~- 582 (945)
.|+....+.--|++.++.+-....+... -+.|.|+. ..|+..+ +..|.-.|.+- |..+.....
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-----~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-----DYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-----ccceEEecccccCCceeeeeeh
Confidence 3444555666677777777776666653 45666643 3344443 55666667653 222221111
Q ss_pred -c-cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 583 -F-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 583 -~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
. ......+. ......++++++..|.|++||.-.......+++-+. .|..+..+.+|+++++.+.. .+.+-|+.
T Consensus 558 dY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 558 DYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred hcccccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 1 11112222 223456999999999999999766555555555444 78999999999998877754 67777764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.81 E-value=26 Score=37.47 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=58.1
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCce---EEEe----cCCCCCEEEEEeeec--CCccEEEEEEcC------
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK---LFNF----EGHEAPVYSICPHHK--ENIQFIFSTAID------ 517 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~---~~~~----~~~~~~v~~~~~~~~--~~~~~l~s~~~d------ 517 (945)
..++|+|.|||. ++++ ...|.|++++..+.. +..+ .........++++|. .++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~--l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSC--EEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCc--EEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 367899999997 6665 559999999944443 2232 223456889999883 233333333321
Q ss_pred --CeEEEEEccCC-------CeeE-Eec---CCCCeEEEEEEcCCCCEEEEEee
Q 002264 518 --GKIKAWLYDTM-------GSRV-DYD---APGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 518 --g~i~iwd~~~~-------~~~~-~~~---~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
..|.-|.+... +.+. ... ...+....+.|.|||.+.++.+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444433 1111 112 23456778999999977777765
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.59 E-value=8 Score=42.06 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=56.8
Q ss_pred CceeEEeecCCCceEEecCCCeEE-EEeccC-------ceEEE-EecCC----CCCeeEEEeecCCCceEEEeecC----
Q 002264 832 EAVPCIALSKNDSYVMSATGGKIS-LFNMMT-------FKVMT-TFMSP----PPASTFLAFHPQDNNIIAIGTED---- 894 (945)
Q Consensus 832 ~~i~~l~~s~dg~~la~~sd~~i~-iwd~~~-------~~~~~-~~~~h----~~~i~~l~~s~~~~~~lasg~~d---- 894 (945)
.....+++.++| ++++ +...|. +.|.+. .+.+. .+... ......++|.| ||++.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence 345789999999 4444 434444 435431 11222 23221 23477899999 77665544411
Q ss_pred ---------------ceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCC
Q 002264 895 ---------------STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 895 ---------------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
|.|.-++..+++. ..+.........++|+++|.++++-..+
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 4456666555543 2332223446789999999988775543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.78 Score=31.08 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=26.9
Q ss_pred CCeeEEEeecCCC--ceEEEeecCceEEEEeccc
Q 002264 873 PASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 873 ~~i~~l~~s~~~~--~~lasg~~dg~v~vwd~~~ 904 (945)
+.|.++.|||..+ .+||.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998444 5899888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=28 Score=37.18 Aligned_cols=267 Identities=11% Similarity=0.069 Sum_probs=125.0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEc-cCCcccccce-eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSY-AGSNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS 483 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~-~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~ 483 (945)
...+.+|+|....+-+|+|. +|. ||.. +.|+.-+... .+......+.++.|.++ . .++. +..+.|..-...
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~--~~~~-G~~g~i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-E--GWIV-GQPSLLLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-c--EEEe-CCCceEEEECCC
Confidence 45788999986666677664 453 3333 4444333211 11112334778888643 3 3444 445544332233
Q ss_pred CceEEEec---CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-e-cCCCCeEEEEEEcCCCCEEEEEee
Q 002264 484 GRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-Y-DAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 484 ~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|+.-..+. ........+.. ..++. +..++..|.|. ....+..... + ......+..+.+.+++.+++++.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~--~~~~~-~~~~g~~G~i~--~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~- 191 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITA--LGPGT-AEMATNVGAIY--RTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS- 191 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEE--ECCCc-ceeeeccceEE--EECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-
Confidence 33222221 01111122221 11222 23334444442 2222222221 1 12234688899999987776664
Q ss_pred cCCCCceEEEE-eCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC--CCCCCccEE
Q 002264 559 SKDGDSFLVEW-NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--GGLPNLPRL 635 (945)
Q Consensus 559 ~~d~~~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v 635 (945)
.|.+..- | ..++.-..........+..+.+.++++.++++ ..|.+++=..+.+..-.....+ .....+.++
T Consensus 192 ----~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v 265 (334)
T PRK13684 192 ----RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDL 265 (334)
T ss_pred ----CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeE
Confidence 4545432 2 12222222233333467888999988766654 5676653234455433322222 111246788
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
.+.+++..++++ .+|.+. .....+ ...+...... ........+.|..+++.+++|.
T Consensus 266 ~~~~~~~~~~~G-~~G~v~-~S~d~G-~tW~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 266 AYRTPGEIWAGG-GNGTLL-VSKDGG-KTWEKDPVGE--EVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred EEcCCCCEEEEc-CCCeEE-EeCCCC-CCCeECCcCC--CCCcceEEEEEeCCCceEEECC
Confidence 999987766554 566554 344444 2222221100 0112355566666665555433
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.18 Score=53.49 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=82.8
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.-++.-..++|..+|..+++.+-..+.+.+||+.+..... + ..-..|.... +.|++.+..+
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L--------------E~gg~~s~sl--l~wsKg~~el 132 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L--------------ESGGTSSKSL--LAWSKGTPEL 132 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H--------------hccCcchHHH--HhhccCCccc
Confidence 3455677888888888767777788999999997643211 0 0011233333 7899999999
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+.|...|.+.|++..+...+. ....|...+++++|.+.+. .+.++.|..+.+-.
T Consensus 133 ~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 133 VIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred cccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 999999999999987764433 3444999999999999885 67777777666555
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=89.78 E-value=28 Score=36.28 Aligned_cols=265 Identities=13% Similarity=0.117 Sum_probs=115.3
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccc---cccEEEEEEecCCCeeEEEEEeCCCcEEEEeC
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH---VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~ 482 (945)
...+..|+|..+..-.|+| ..+. .+-..+.|+.-.... .... .-...++.|..+ . .+++| ..+.|..-..
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~-il~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~~~-~--g~ivG-~~g~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGT-ILKTTDGGKTWQPVS-LDLDNPFDYHLNSISFDGN-E--GWIVG-EPGLLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTE-EEEESSTTSS-EE------S-----EEEEEEEETT-E--EEEEE-ETTEEEEESS
T ss_pred CCceEEEEEecCCEEEEEe-cCCE-EEEECCCCccccccc-cCCCccceeeEEEEEecCC-c--eEEEc-CCceEEEecC
Confidence 4589999999666666666 4453 233444554433211 1111 223667888643 3 44544 3454332224
Q ss_pred CCceEEEec---CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 483 SGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 483 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.|+.-..+. .-.+....+.... ++ .....+..|.| |....+..... .......+..+..++||++++++.
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~--~~-~~~l~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALG--DG-SAELAGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEE--TT-EEEEEETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcC--CC-cEEEEcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC
Confidence 444333321 1223333343322 22 33334455544 33333333322 233345788888999999998876
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE-CCCCeeEEE--eecCCCCCCccE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNVNILTS--TDAEGGLPNLPR 634 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~--~~~~~~~~~v~~ 634 (945)
. ...+.-||.....-...-.. ....+..+.|.|++...+. ...|.|++=+ ....+.... .......-.+..
T Consensus 164 ~----G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld 237 (302)
T PF14870_consen 164 R----GNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILD 237 (302)
T ss_dssp T----SSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEE
T ss_pred c----ccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEE-eCCcEEEEccCCCCccccccccCCcccCceeeEE
Confidence 2 33445677543222222222 2337899999999766554 4888888877 222222222 111112224788
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
++|.+++...++|+.. .+ +.....++.-.+.... ....+.+..+.|..+.+-++
T Consensus 238 ~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~---~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 238 LAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVG---ENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp EEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGG---TTSSS---EEEEEETTEEEE
T ss_pred EEecCCCCEEEEeCCc-cE-EEeCCCCccceECccc---cCCCCceEEEEEcCCCceEE
Confidence 9999998888776644 33 3344445322222111 11223356677765544443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.36 E-value=24 Score=37.61 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=88.6
Q ss_pred ccceEEEEEecCCCeEEEeeecCe------EEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEE
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGV------QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l 837 (945)
-+.+.++.+.+++..+++.+++|. +..+++..... ..+.......+.+-+.. |.... . ......++
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Egi 90 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEGI 90 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhHe
Confidence 356788999977777888888777 55555443111 11111111111222221 22211 1 12256678
Q ss_pred eecCCCceEEecC-C------CeEEEEeccCceEEEEec---------------CCCCCeeEEEeecCCCceEEEeecC-
Q 002264 838 ALSKNDSYVMSAT-G------GKISLFNMMTFKVMTTFM---------------SPPPASTFLAFHPQDNNIIAIGTED- 894 (945)
Q Consensus 838 ~~s~dg~~la~~s-d------~~i~iwd~~~~~~~~~~~---------------~h~~~i~~l~~s~~~~~~lasg~~d- 894 (945)
++.++|.++++.- + -.|.-++.. |+....+. ......-+|+++| +|+.|.++.+.
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECcc
Confidence 8878888777664 4 458888866 65544442 1233478899999 88866655432
Q ss_pred ----c--e-------EEEE--eccc-ceEE----EEecC-----CCcceeEEEecCCcceee
Q 002264 895 ----S--T-------IHIY--NVRV-DEVK----SKLKG-----HQKRITGLAFSTSLNILV 931 (945)
Q Consensus 895 ----g--~-------v~vw--d~~~-~~~~----~~l~~-----h~~~V~~l~~s~dg~~l~ 931 (945)
+ . ++++ |..+ ++.. ..+.. ....|..+.+-+++++|+
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 2 1 4554 4444 3222 22332 356788999999998776
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.36 E-value=1.5 Score=29.17 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=23.9
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCc--CcEEEE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~d--g~i~iw 372 (945)
......-.+..|||||++++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33556788999999999988888777 776666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.04 E-value=26 Score=34.98 Aligned_cols=246 Identities=8% Similarity=-0.026 Sum_probs=131.5
Q ss_pred cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~ 663 (945)
.+.....++-.+||..-+++...|.|--.|..+|+....--..+. .-..|...|||..-++-+.. .|.-+|.++...
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga--~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA--SPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCC--CCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 333456688889998888888888888889888887654433332 45788889998877664433 455556655422
Q ss_pred ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccc
Q 002264 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (945)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (945)
..-.+.. +.-........|.+.|.+.+++..+-..+++-. .+.|++|..
T Consensus 137 t~f~lp~---~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa----------------------------~~~i~vfpa 185 (353)
T COG4257 137 TRFPLPL---EHADANLETAVFDPWGNLWFTGQIGAYGRLDPA----------------------------RNVISVFPA 185 (353)
T ss_pred EEeeccc---ccCCCcccceeeCCCccEEEeeccccceecCcc----------------------------cCceeeecc
Confidence 1111211 111234667789999988776544332221111 144555554
Q ss_pred ceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccc
Q 002264 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (945)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (945)
. .......++..|||..-++.-.+..|-.. |...+.....
T Consensus 186 P------------------qG~gpyGi~atpdGsvwyaslagnaiari----------------------dp~~~~aev~ 225 (353)
T COG4257 186 P------------------QGGGPYGICATPDGSVWYASLAGNAIARI----------------------DPFAGHAEVV 225 (353)
T ss_pred C------------------CCCCCcceEECCCCcEEEEeccccceEEc----------------------ccccCCccee
Confidence 3 22344667888888866554444333322 2222211110
Q ss_pred cccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceE-EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 824 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 824 ~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
..+. .....-..+-.+|.|+..++-. .+.+.-||-.+..- ...+.+....-.++.... .++.-.+-..-|.|.-+|
T Consensus 226 p~P~-~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW~sea~agai~rfd 303 (353)
T COG4257 226 PQPN-ALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVWLSEADAGAIGRFD 303 (353)
T ss_pred cCCC-cccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEEeeccccCceeecC
Confidence 0110 0112223344466777766654 56677777554321 123333334455566655 444444444445566666
Q ss_pred cccc
Q 002264 902 VRVD 905 (945)
Q Consensus 902 ~~~~ 905 (945)
-++.
T Consensus 304 peta 307 (353)
T COG4257 304 PETA 307 (353)
T ss_pred cccc
Confidence 5543
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=89.00 E-value=77 Score=40.35 Aligned_cols=148 Identities=12% Similarity=0.201 Sum_probs=83.1
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
|-..++.|.-+|+|.. +=. .|+.++.||..... |.+. -..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EEe--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 5556677777777764 322 46777777766543 2210 011234555666666666665
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC-C--Cc------eEEEecCC
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-S--GR------KLFNFEGH 493 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~-~--~~------~~~~~~~~ 493 (945)
.++. .|-|+..+.... ..-..|.+...+++|.- .+.++.....+.+|+. . +. ....+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 244555543221 12345777888999983 3666766667799982 2 11 12233333
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.....++.+++ ..|++...+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 33556666643 2588888899887766543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.84 E-value=2.8 Score=44.29 Aligned_cols=161 Identities=15% Similarity=0.171 Sum_probs=85.9
Q ss_pred eccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE--EEecCC-CC----CEE-EEEeeecCCccEEEEEEcCC
Q 002264 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL--FNFEGH-EA----PVY-SICPHHKENIQFIFSTAIDG 518 (945)
Q Consensus 447 ~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~--~~~~~~-~~----~v~-~~~~~~~~~~~~l~s~~~dg 518 (945)
+..-...|..+-..|||+.+++.+| ..+.+++...+.+ .++... .+ .|+ .+.. -..|.-++.++.||
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~l--L~Gg~SLLv~~~dG 290 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYL--LSGGFSLLVVHEDG 290 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHH--HhCceeEEEEcCCC
Confidence 4455667888999999997666665 4677777333222 122111 11 111 1110 11456788899999
Q ss_pred eEEEE-EccCCCee-E----EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEE
Q 002264 519 KIKAW-LYDTMGSR-V----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ 592 (945)
Q Consensus 519 ~i~iw-d~~~~~~~-~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 592 (945)
.|.-| |.+..... . .+......+..+.-..+.+-+++-.. +|++..+.....+.+-.-... . ....++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~----~G~L~~f~st~~~~lL~~~~~-~-~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYR----NGTLQSFYSTSEKLLLFERAY-Q-APQLVA 364 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcC----CCceeeeecccCcceehhhhh-c-Ccceee
Confidence 99887 44332221 1 12222233333332223344444442 666666654433332211111 1 355688
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 593 FDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 593 ~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
++|.+.++++-. .|.++++.+++..+
T Consensus 365 ~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 365 MSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eCcccchheeec-CCceEEEEecCCCC
Confidence 999998887653 56788888776544
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.66 E-value=11 Score=43.69 Aligned_cols=110 Identities=14% Similarity=0.234 Sum_probs=71.0
Q ss_pred ceeEEeecC--CCceEEecC-CCeEEEEeccC-------c----e---------EEEEecCCCCCeeEEEee--cCCCce
Q 002264 833 AVPCIALSK--NDSYVMSAT-GGKISLFNMMT-------F----K---------VMTTFMSPPPASTFLAFH--PQDNNI 887 (945)
Q Consensus 833 ~i~~l~~s~--dg~~la~~s-d~~i~iwd~~~-------~----~---------~~~~~~~h~~~i~~l~~s--~~~~~~ 887 (945)
.|+.+.+.. +...|+.+. ||.|.+|.+++ . + +...+. .....+.++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 355555443 334666665 89999997531 1 0 111122 23468889998 6 7889
Q ss_pred EEEeecCceEEEEecccc--eE-EEEecCCCcceeEEEecCCc---c---eeeeecCCceEEEEec
Q 002264 888 IAIGTEDSTIHIYNVRVD--EV-KSKLKGHQKRITGLAFSTSL---N---ILVSSGADAQVTLCVE 944 (945)
Q Consensus 888 lasg~~dg~v~vwd~~~~--~~-~~~l~~h~~~V~~l~~s~dg---~---~l~s~~~Dg~i~vWdl 944 (945)
||+++....|.||-.... +. ...-..|...|.+|+|.++. . +|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999998888888876542 11 11111266789999998653 2 7888999999988875
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.12 E-value=20 Score=38.82 Aligned_cols=151 Identities=9% Similarity=0.078 Sum_probs=87.9
Q ss_pred EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecC------CccEEEEEEcCCeEEEEEcc
Q 002264 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLYD 526 (945)
Q Consensus 454 v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~ 526 (945)
+..+....+...+++..|+....++--| ..|+.+..+..|...+ +.+.|.. +.+.| .|-.+..|.-.|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceE-EeecccceEEeccc
Confidence 3334444444444666777777777778 8889888888777653 3444432 12334 34445555545555
Q ss_pred CCCeeEEecCCCC-----eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEE
Q 002264 527 TMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 527 ~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 601 (945)
............. ...+..- ....++++++. .|-|++||--.-+....+++... .|..+..+.+|.+++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~il 619 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHIL 619 (776)
T ss_pred ccCCceeeeeehhcccccccccccc-ccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEE
Confidence 4432222111111 2222222 23457888775 77899999655444445555544 677888999999988
Q ss_pred EEECCCcEEEEEC
Q 002264 602 AVGEDSQIKFWDM 614 (945)
Q Consensus 602 ~~~~dg~i~iwd~ 614 (945)
+.+. ..+.+-|+
T Consensus 620 aTCk-~yllL~d~ 631 (776)
T COG5167 620 ATCK-NYLLLTDV 631 (776)
T ss_pred Eeec-ceEEEEec
Confidence 8775 35666554
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=88.01 E-value=2.2 Score=42.19 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCceEEEeecCceEEEEecccceEEEE-------ec-------CCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 884 DNNIIAIGTEDSTIHIYNVRVDEVKSK-------LK-------GHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 884 ~~~~lasg~~dg~v~vwd~~~~~~~~~-------l~-------~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.+.+|++.+.+|.+++||+.+++++.. +. .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 667899999999999999998875432 22 3557899999999998888765 467788875
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.60 E-value=6.2 Score=46.97 Aligned_cols=145 Identities=12% Similarity=0.024 Sum_probs=86.0
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCce------EEEecC------CCCCEEEEEeeecCCccEEEEEEcCCeE
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK------LFNFEG------HEAPVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~------~~~~~~------~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
+|..+...+|+....++..+.+-.|..||...-+ ..-|.. ......++.|+|... ...+.+..|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 5666777778775445555555578889822111 111111 122345666776543 345667788888
Q ss_pred EEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc---cCcceEEEEEcCCC
Q 002264 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF---RKKSNGVVQFDTTQ 597 (945)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 597 (945)
++..+........--.-....++++|+|.|+.++++-. .|++.-|... .+....+.+. ....+.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 88865443322222122346899999999999998863 7888887653 3333333322 22357888887766
Q ss_pred CEEEEE
Q 002264 598 NHFLAV 603 (945)
Q Consensus 598 ~~l~~~ 603 (945)
.++++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 666653
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=87.30 E-value=50 Score=41.90 Aligned_cols=73 Identities=10% Similarity=0.139 Sum_probs=49.7
Q ss_pred ccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEE-EecCCCCCeeEEEeecCCCceEEEeecCceEEEEe
Q 002264 825 VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (945)
Q Consensus 825 l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~-~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd 901 (945)
+.|.. ...|+++|+-.+.++++.-..|.+.... ..+.++. ...+-.+.|..+++.. .. -|.....+|.++--+
T Consensus 697 l~Gl~-~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~-~~-nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 697 LEGLE-DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDE-KQ-NLYALTSTGELFRLP 770 (1774)
T ss_pred ccCCC-cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeecc-cc-ceeEecCCCceeecC
Confidence 44433 6778999998777777666688899888 6565432 2234568899999987 54 455566788776543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.29 E-value=39 Score=40.43 Aligned_cols=175 Identities=11% Similarity=0.089 Sum_probs=93.7
Q ss_pred cEEEEe-CCCceEEEecCC----CCCEEEEEeeecCCccEEEEEE-----------cCCeEEEEEccCCCeeEEecCCCC
Q 002264 476 LIKVWE-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFSTA-----------IDGKIKAWLYDTMGSRVDYDAPGH 539 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~-----------~dg~i~iwd~~~~~~~~~~~~~~~ 539 (945)
.|++.| .+++.+..+.-. .-.+..+.|+..++..++++|+ .+|.++.|++-.......+-.+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 367777 555554443311 1235555666554443444443 234466666544444333222211
Q ss_pred -eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEE--EECC
Q 002264 540 -WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKF--WDMD 615 (945)
Q Consensus 540 -~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i--wd~~ 615 (945)
.-.-.+..|...+++++- ...+++||+...++++...... ...|..+.+ .+..+++|...-.+.+ |+..
T Consensus 934 ~~~~v~Ai~~f~~~~Lagv-----G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGV-----GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred CCccceEEeccCCEEEEec-----ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence 112234557666666654 6689999999888777655433 223444544 3668888875444444 5555
Q ss_pred CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
..+.+..... .-...|+++.+- |...+|.+..=|.+.+..+.
T Consensus 1007 ~n~l~~fadD-~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1007 DNQLIVFADD-PVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCeEEEEeCC-CccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 5554443332 222345555443 55567777777777776654
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=87.08 E-value=22 Score=34.39 Aligned_cols=50 Identities=12% Similarity=0.384 Sum_probs=36.7
Q ss_pred CEEEEEECCCcEEEEECC--CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 598 NHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
..|+.+...+.|.+|++. ..+....+.. .+.|..+.++..|+++++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEee
Confidence 455555677789999988 3445555544 3479999999999999987543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=87.04 E-value=2.8 Score=39.79 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=24.1
Q ss_pred cceeEEEecCCc------ceeeeecCCceEEEEec
Q 002264 916 KRITGLAFSTSL------NILVSSGADAQVTLCVE 944 (945)
Q Consensus 916 ~~V~~l~~s~dg------~~l~s~~~Dg~i~vWdl 944 (945)
..|.+++|||-| -.|++.+.++.|.||..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 479999999954 47888899999999964
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=51 Score=36.00 Aligned_cols=21 Identities=0% Similarity=-0.298 Sum_probs=11.4
Q ss_pred CCCEEEEEEC-CCcEEEEEccC
Q 002264 417 DGNYVGVAFT-KHLIQLYSYAG 437 (945)
Q Consensus 417 ~g~~las~~~-dg~i~vwd~~~ 437 (945)
+++..+.|+. +..+.++|++.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCC
Confidence 4555444443 44567777753
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=86.75 E-value=47 Score=35.35 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=62.6
Q ss_pred ceEEEEEcCCCCEEEEEECCCc------EEEEECCC--C--e---eEEEeecCCCC--------CCccEEEEcCCCCEEE
Q 002264 587 SNGVVQFDTTQNHFLAVGEDSQ------IKFWDMDN--V--N---ILTSTDAEGGL--------PNLPRLRFSKEGNLLA 645 (945)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~~dg~------i~iwd~~~--~--~---~~~~~~~~~~~--------~~v~~v~~sp~g~~l~ 645 (945)
.+..+.+.+++..+++.+.+|. ++.+++.. + . ........... -..-++++.++|.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 4677888877778888888888 76666554 1 1 11111111110 1334788877888887
Q ss_pred EEECC------CcEEEEECCCCccccccccC---C-------ccccccCcceeeeecccccceec
Q 002264 646 VTTAD------NGFKILANAIGLRSLRAVEN---P-------PFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 646 ~~~~d------g~i~iw~~~~~~~~~~~~~~---~-------~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
+.-.+ ..|+-++.. + .....+.- . ..........+++++|+|+.+++
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 76666 678888765 4 22222211 1 11223345789999999996554
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.49 E-value=22 Score=40.82 Aligned_cols=99 Identities=15% Similarity=0.296 Sum_probs=56.8
Q ss_pred eEEEEEecCCCeEEEeeecCe-----EEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC
Q 002264 767 VVRLLYTNSAVGLLALGSNGV-----QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (945)
Q Consensus 767 v~~l~~s~dg~~l~~~~~dg~-----i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~ 841 (945)
-..+.|-|.|..+++.+.||. +.++. + +|- .-|+.-.. + +-...+..++|..
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfE--r-----NGL------------rHGef~lr-~---~~dEk~~~~~wn~ 305 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFE--R-----NGL------------RHGEFDLR-V---GCDEKAFLENWNL 305 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEc--c-----CCc------------ccCCcccc-C---CchhhhhhhhhhH
Confidence 346889999999999886542 22221 1 111 11111000 0 1344567778887
Q ss_pred CCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceE
Q 002264 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (945)
Q Consensus 842 dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~l 888 (945)
....+|.+-.+.+++|-..+........-.-..+.-+.|+|...+.|
T Consensus 306 ~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl 352 (1243)
T COG5290 306 LSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTL 352 (1243)
T ss_pred HHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEE
Confidence 78888888888999998776544333332334456667776433333
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=86.47 E-value=49 Score=35.22 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=34.2
Q ss_pred CccEEEEEEcC-----CeEEEEEccCCCeeEEecCCC-CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 507 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
++.+.+.|+.. ..+..||+.+.+-...-..+. ......+...+++..+.++.+......+..||+.+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 34666666642 357778776544222111111 111222223456666666642211123578898876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.46 E-value=39 Score=34.15 Aligned_cols=328 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred eecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEe---CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEE
Q 002264 446 QIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (945)
Q Consensus 446 ~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (945)
.+.+|- ..|..+.....-. ++..|-.=-..-+|+ .+...+..+....+-+..+.++. ++.+.+..+.-++
T Consensus 36 ~~vghfg~~vsavdv~~~ya--~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse----~yvyvad~ssGL~ 109 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYA--YVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSE----EYVYVADWSSGLR 109 (370)
T ss_pred EEeeeccCCccccccccccc--ccccCceEeeccccCcccccCcceEEEEehhhhhheeEecc----cEEEEEcCCCceE
Q ss_pred EEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC---CceeeEeccccCcceEEEEEcCCCC
Q 002264 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
+.|+.+.........-...-..-.+.-.|++..++-. +.-+.+.|+.+ ..+...+..... ....++++ |+
T Consensus 110 IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadl----ddgfLivdvsdpssP~lagrya~~~~-d~~~v~IS--Gn 182 (370)
T COG5276 110 IVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADL----DDGFLIVDVSDPSSPQLAGRYALPGG-DTHDVAIS--GN 182 (370)
T ss_pred EEeccCCCCcceeccccCCceEEEEEecCCEEEEeec----cCcEEEEECCCCCCceeeeeeccCCC-CceeEEEe--cC
Q ss_pred EEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccC
Q 002264 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (945)
+-+.+..|+-+.+-|+........+......+.+.++..+++.-+++..+.. +.+-|..+.
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg--vlivd~s~~----------------- 243 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG--VLIVDVSGP----------------- 243 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc--eEEEecCCC-----------------
Q ss_pred cceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecC
Q 002264 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (945)
Q Consensus 679 ~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (945)
..+.++...+
T Consensus 244 ---------------------------------------------------------ssp~~~gsye------------- 253 (370)
T COG5276 244 ---------------------------------------------------------SSPTVFGSYE------------- 253 (370)
T ss_pred ---------------------------------------------------------CCceEeeccc-------------
Q ss_pred CCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEe
Q 002264 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (945)
Q Consensus 759 ~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~ 838 (945)
....+.--.+.-.|++...+..+.-+.+-+++.+......... ....-.+-.
T Consensus 254 ----t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~------------------------~t~g~~a~g 305 (370)
T COG5276 254 ----TSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSL------------------------DTAGYQAAG 305 (370)
T ss_pred ----cCCcccccceecccceeeeeccccCceeEeccCCCCCchhccc------------------------cCCCccccc
Q ss_pred ecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 839 ~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
...-+.++..+..+...+-+...-+......+-...+.+...+- +.+++.+...++.+.||+...
T Consensus 306 i~ay~~y~yiadkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~-~~q~~y~~d~~~gl~i~~~~~ 370 (370)
T COG5276 306 IRAYGNYNYIADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSV-DTQIIYSTDYNGGLSIIEYLG 370 (370)
T ss_pred eEEecCeeEeccCCceEEEeCCChhhcccccCcceEeeecceEE-EeeEEEEeecCCCEEEEEecC
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=86.35 E-value=45 Score=34.74 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=126.1
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC-CcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.-...+.+|+|..+.. -.++|. .+. |+...+| +.-..... ..-..-.-...+|.|..+ ..
T Consensus 14 ~t~~~l~dV~F~d~~~-G~~VG~-~g~--il~T~DGG~tW~~~~~--------------~~~~~~~~~l~~I~f~~~-~g 74 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNH-GWAVGA-YGT--ILKTTDGGKTWQPVSL--------------DLDNPFDYHLNSISFDGN-EG 74 (302)
T ss_dssp S-SS-EEEEEESSSS--EEEEET-TTE--EEEESSTTSS-EE-------------------S-----EEEEEEEETT-EE
T ss_pred CCCCceEEEEEecCCE-EEEEec-CCE--EEEECCCCcccccccc--------------CCCccceeeEEEEEecCC-ce
Confidence 3445899999996555 467765 454 4554443 32211000 000001224677888643 34
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE-EEecCCCCCEEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYS 499 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~v~~ 499 (945)
+++| ..+ +.+...+.|+.-..+..-..-.+....+....++. ..+. +..|.|..=...|+.- .....-.+.+..
T Consensus 75 ~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l~-~~~G~iy~T~DgG~tW~~~~~~~~gs~~~ 149 (302)
T PF14870_consen 75 WIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AELA-GDRGAIYRTTDGGKTWQAVVSETSGSIND 149 (302)
T ss_dssp EEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEEE-ETT--EEEESSTTSSEEEEE-S----EEE
T ss_pred EEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEEE-cCCCcEEEeCCCCCCeeEcccCCcceeEe
Confidence 4444 445 55666666765543221111223344455544444 3343 3445543333344332 223344566777
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe-CCCCceee
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKR 578 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd-~~~~~~~~ 578 (945)
+.. .++|.+++++.......-||--...-...-......|.+|.|.|++...+.+. .+.|+.=+ ....+.-.
T Consensus 150 ~~r--~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-----Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 150 ITR--SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-----GGQIQFSDDPDDGETWS 222 (302)
T ss_dssp EEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-----TTEEEEEE-TTEEEEE-
T ss_pred EEE--CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-----CcEEEEccCCCCccccc
Confidence 664 44778887776666667786443222333334456899999999988766552 67777766 22222111
Q ss_pred E--ecc-ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec-CCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 579 T--YAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 579 ~--~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
. ... .....+..+++.+++...++ +..|.+ +...+.|+.-+.... ..-...+..+.|.++.+-++. +.+|.|.
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~-gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll 299 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAV-GGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLL 299 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEE-ESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEE-eCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEE
Confidence 1 111 11223667899887665554 445544 345566665544432 222235788888766444444 5677665
Q ss_pred EE
Q 002264 655 IL 656 (945)
Q Consensus 655 iw 656 (945)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.23 E-value=9.7 Score=46.38 Aligned_cols=166 Identities=13% Similarity=0.187 Sum_probs=95.4
Q ss_pred CcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
|...+..+.|...=+.+-+-|.=++ |--+.|..+.+|+.+++..... +.+-+..|..|.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhhhheeee
Confidence 3344444445555555666665443 2235689999999998655421 444445555554
Q ss_pred E--------cCCCCEEEEEECCCcEEEEEccCCcccccc------eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 414 W--------SPDGNYVGVAFTKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 414 ~--------s~~g~~las~~~dg~i~vwd~~~~~~~~~~------~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
. -|.=++++.-+.--.|.++-+.-.+..... ..+......|.++....+|+ +|++|- ||. +
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G~-dg~--l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAGR-DGN--L 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEeec-CCC--E
Confidence 3 233344444444455777655422211111 12223355788999888888 666555 553 4
Q ss_pred Ee-----CCC---c-e----------------EEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 480 WE-----LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 480 wd-----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
|. .+| + + +..+. .+..+|..+.+..+ ...+++-+..|+|.+||+..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S--R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS--RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc--cceeeeeccCceEEEEEccC
Confidence 43 111 1 1 11223 56778999988543 46889999999999999876
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.99 E-value=18 Score=44.61 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=44.0
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
...+.+..+......++... .+.+.+|+.........+..... ..++++..++++..||.+.+||...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 33445555544444444432 45566666554444444433222 11788999999999999999999988
Q ss_pred ee
Q 002264 618 NI 619 (945)
Q Consensus 618 ~~ 619 (945)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 65
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=85.98 E-value=20 Score=34.72 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=43.6
Q ss_pred ceeEEeecCCCceEEecCCCeEEEEecc--CceEEEEecCCCCCeeEEEeecCCCceEEEeecC
Q 002264 833 AVPCIALSKNDSYVMSATGGKISLFNMM--TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (945)
Q Consensus 833 ~i~~l~~s~dg~~la~~sd~~i~iwd~~--~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~d 894 (945)
....++-+..+.++++++..+|.+|++. ..+.+.+|.. -+.|..+.++. .|.+|++--++
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k 80 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEK 80 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEee
Confidence 4455665554455555667889999987 4566777764 47899999999 89999987543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.87 E-value=4.8 Score=39.79 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=51.0
Q ss_pred EeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccccc-------CCCccEEEEEEcCCCCEEEEE
Q 002264 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-------DVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 352 fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~i~~s~~g~~las~ 424 (945)
+..++.+ |++-+.+|.+++||+.+++.+... ..+. .++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4557776 555677999999999998876532 1111 1122 466789999999999888776
Q ss_pred ECCCcEEEEEccCC
Q 002264 425 FTKHLIQLYSYAGS 438 (945)
Q Consensus 425 ~~dg~i~vwd~~~~ 438 (945)
+ +|..+.|+.+-+
T Consensus 85 s-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 85 S-NGDSYSYSPDLG 97 (219)
T ss_pred e-CCCEEEeccccc
Confidence 4 578899986543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=85.84 E-value=75 Score=36.76 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=90.0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeec-cccccEEEEEEec-----CCCeeEEEEEe-C-C-Cc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAY-----PNKLLCVVTCG-D-D-KL 476 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~-----~~~~~~l~s~s-~-d-~~ 476 (945)
.+.|..|.|.++++.+++...+|.|.+||...+...... .+. .+...+.-=.|-+ +++.++|+.+. . + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~-~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVP-QLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccc-ccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 568999999999999999999999999999332211100 111 1222221113322 23332333333 1 2 24
Q ss_pred EEEEeC--CCceEEEec---CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC----C--CeEEEEE
Q 002264 477 IKVWEL--SGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----G--HWCTTML 545 (945)
Q Consensus 477 i~vwd~--~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~--~~i~~~~ 545 (945)
.+++.. ++..+..+. .+........|... .|.+.-- .+++|.+|++...+...++..+ . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 566664 444444443 22222333344433 3433222 7789999998777655544433 1 2344444
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
--...+.|++. ++.|++.|+.-...+..+.
T Consensus 285 ~~s~nRvLLs~------~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 PPSPNRVLLSV------NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cCCCCeEEEEc------CCEEEEEeehhhhhhhhhh
Confidence 32334445544 6789999987665555544
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.84 E-value=0.17 Score=53.56 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=94.5
Q ss_pred cceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 765 ~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
.......|.+.+.-++.++.+..+..||- ......... ..+....++|..++.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~----------------------agq~~le~n-----~tg~aldm~wDkegd 87 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDK----------------------AGQVILELN-----PTGKALDMAWDKEGD 87 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhh----------------------hcceecccC-----CchhHhhhhhccccc
Confidence 33445677777777888888877766651 111111111 234556678888887
Q ss_pred eEEecC--CCeEEEEeccCceEEEEec-CCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEE
Q 002264 845 YVMSAT--GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (945)
Q Consensus 845 ~la~~s--d~~i~iwd~~~~~~~~~~~-~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 921 (945)
.++... .+.+.+||+.+... .+++ +-...-.-+.|++ +...++.|...|.+.|++-.+.+.+...-.|..+++.+
T Consensus 88 vlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~ 165 (615)
T KOG2247|consen 88 VLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQI 165 (615)
T ss_pred hhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEE
Confidence 776665 67899999875322 2222 1111112278999 88999999999999999998877766666699999999
Q ss_pred EecCCcceeeeecCCc
Q 002264 922 AFSTSLNILVSSGADA 937 (945)
Q Consensus 922 ~~s~dg~~l~s~~~Dg 937 (945)
++.+.+.. +.++.|.
T Consensus 166 av~lEd~v-il~dcd~ 180 (615)
T KOG2247|consen 166 AVTLEDYV-ILCDCDN 180 (615)
T ss_pred Eeccccee-eecCcHH
Confidence 99987643 3344443
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=84.43 E-value=29 Score=30.75 Aligned_cols=113 Identities=10% Similarity=0.041 Sum_probs=64.5
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCCcccc-----cceeeccccccEEEEEEec---CCCeeEEEEEeCCCcEEEEe-C
Q 002264 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR-----QHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 412 i~~s~~g~~las~~~dg~i~vwd~~~~~~~~-----~~~~~~~h~~~v~~l~~s~---~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
-.|......|++++.-|+|.|++........ .+..+ .-...|++++-.+ +...-.|+.|+ ...+..|| .
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4566666688889999999999876443211 11122 2445677776443 32222677676 66788999 4
Q ss_pred CCceEEEecCCCCCEEEEEeeecCC-ccEEEEEEcCCeEEEEEccC
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 527 (945)
++..+ -++.-.+.|+++.+-.-.+ ..-++..+.+..|.-||.+-
T Consensus 82 ~N~d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDL-FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchh-hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 44433 2334456677776632221 12344445566676666543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.38 E-value=71 Score=34.47 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=81.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC-CCceE---
Q 002264 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKL--- 487 (945)
Q Consensus 412 i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~-~~~~~--- 487 (945)
+-|. |.+..+.+...|.+.-|-++....=-....-....++|.++.||+|.+ .++.--.|++|.+++. ..+..
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc--eEEEEecCceEEEEecCCCchhhHH
Confidence 3344 333333344556677776654332111112224567999999999999 8999999999999993 32222
Q ss_pred -EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 488 -FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 488 -~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.+.+.....|.+.+|..+ .-++..+..| +.+|-...... ......+.-.|.-..|.++.+.++.++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS---TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecC---eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 222334455888888654 3354444433 45554433222 222334555677888888888766554
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.27 E-value=55 Score=35.92 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=62.4
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
.-.|..+..|+.|..+|-.|.+|.+..+=.+. ...-..+......|+|=.|.-+.+ |++.+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~r---wG~~s~~eDgk~~v~CRt~~i~~~---~ftss------------- 163 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKR---WGKNSEFEDGKSTVNCRTTPVAER---FFTSS------------- 163 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhh---cCccceecCCCceEEEEeecccce---eeccC-------------
Confidence 34688899999999999999999554442111 111113333444455555544433 33322
Q ss_pred eEEEecCCCCCEEEEEeeecC--CccEEEEEEcCCeEEEEEccCCCeeEEecC
Q 002264 486 KLFNFEGHEAPVYSICPHHKE--NIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (945)
..-.+...+|+|+. | ..|..-+.|..||+||+..........+
T Consensus 164 -------~~ltl~Qa~WHP~S~~D-~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 164 -------TSLTLKQAAWHPSSILD-PHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred -------CceeeeeccccCCccCC-ceEEEEecCcEEEEEecCCcchhhccCC
Confidence 11124455677654 4 4677778899999999987766654433
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=83.22 E-value=4 Score=27.55 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.8
Q ss_pred CCCceEEecC--CCeEEEEeccCceEEEEecCCCCCeeEEEe
Q 002264 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAF 880 (945)
Q Consensus 841 ~dg~~la~~s--d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 880 (945)
||+++|.+++ +++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5777777765 67899999999988888775 233344444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=82.95 E-value=40 Score=38.43 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=54.6
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
....++++.-+|.|..++.+..||.|++|+......-+ +-....+-..+.|...| +++...|..+.-|..+|
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheeeccC
Confidence 34567888889999999999999999999987643321 11233345566776554 46666788888888777
Q ss_pred ceEEEe
Q 002264 485 RKLFNF 490 (945)
Q Consensus 485 ~~~~~~ 490 (945)
-..+.|
T Consensus 85 vvqqqf 90 (1636)
T KOG3616|consen 85 VVQQQF 90 (1636)
T ss_pred cchhhc
Confidence 544444
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=82.55 E-value=57 Score=32.76 Aligned_cols=229 Identities=11% Similarity=0.032 Sum_probs=133.1
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCce
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~ 486 (945)
.-..++-+|||..-.++...+.|--.|..+|+.... --+....-..|..-|||. .-++-+.. -|.-.| .+..
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---pLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~e- 135 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---PLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLE- 135 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEE---ecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccc-
Confidence 345678888998888887777787778888765431 113334455677777777 33432222 444455 3332
Q ss_pred EEEec----CCCCCEEEEEeeecCCccEEEEEEcC---------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 487 LFNFE----GHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 487 ~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
+.+|. .-........|.+ .|.+-+++... +.|++|+.. .+..-..|+..|||..-
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~--~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDP--WGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVW 203 (353)
T ss_pred eEEeecccccCCCcccceeeCC--CccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEE
Confidence 22221 1233455555543 55666665421 234444322 23345678899999987
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEecccc--CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
++.-. .+.|-..|..++... .+.... ......+..+|.+..-++....+.++.||..+.. -......+....
T Consensus 204 yasla----gnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~ar 277 (353)
T COG4257 204 YASLA----GNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKAR 277 (353)
T ss_pred EEecc----ccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCC
Confidence 77543 566777787776322 222111 1134456677888888887788889888877655 444555554445
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
-.++.....++.-.+--..|.|.-+|.++.
T Consensus 278 pys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 278 PYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cceeeeccCCcEEeeccccCceeecCcccc
Confidence 566777666666555555566666666554
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.26 E-value=57 Score=31.29 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=90.0
Q ss_pred EEEEEeCC--CcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEE
Q 002264 467 CVVTCGDD--KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 467 ~l~s~s~d--~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 543 (945)
++.+.+.- ..|++|| .+|+.+..-.-....+..=-....++ .+..-.-.+|.-..+|.++.+....+...+. -..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 66666543 3689999 66776654332211111110111112 2333345677778898888777766655543 122
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe----ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
+ ..|++.|+.+. +...++.-|.++.....++ .+..-..++-+.|- +|...+-.=.+..|...+..+|+.
T Consensus 136 L--t~d~~~Limsd----GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 L--TSDDKNLIMSD----GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred e--ecCCcceEeeC----CceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 2 34566666543 4667777787765444333 22221122333332 343433344555666667777777
Q ss_pred EEEeecCC----------CCCCccEEEEcCCCCEEEE
Q 002264 620 LTSTDAEG----------GLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 620 ~~~~~~~~----------~~~~v~~v~~sp~g~~l~~ 646 (945)
+..+...+ +..-.+.+++.|++..+..
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 66554321 2234678899987744443
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=80.03 E-value=96 Score=33.77 Aligned_cols=225 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
+..+..+..+|.|.-.|.+++..+-...... ....+..-.+..+|+ ++.++.++.+..+| .+|+.+....... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~ 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGG-S 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCC-C
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
..+.=.+-.....++.++.++.+...|..++.......... .....-........++.+... . ++.+.-.|..+|
T Consensus 143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-C-cceEEEEEccCC
Q ss_pred ceeeEeccccCcceEEEEEcCC--------CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTT--------QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~ 646 (945)
...-..............-.|. +..++.++.++.+...+..+++.+..+.................+
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~----- 294 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAG----- 294 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecC-----
Q ss_pred EECCCcEEEEE
Q 002264 647 TTADNGFKILA 657 (945)
Q Consensus 647 ~~~dg~i~iw~ 657 (945)
.||.+.++.
T Consensus 295 --~dG~v~~~~ 303 (370)
T COG1520 295 --ADGKVYIGF 303 (370)
T ss_pred --CCccEEEEE
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 945 | ||||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-10 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 9e-10 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 9e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-09 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 8e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 3e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 4e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 4e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 6e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 7e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 7e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 7e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 8e-04 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 9e-04 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 9e-04 |
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 945 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.8 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.74 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.71 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.69 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.67 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.67 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.67 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.63 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.61 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.59 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.54 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.53 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.52 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.52 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.52 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.52 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.51 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.5 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.5 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.48 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.47 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.46 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.44 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.43 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.43 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.42 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.41 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.38 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.38 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.32 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.29 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.29 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.28 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.27 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.26 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.26 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.26 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.25 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.25 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.25 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.25 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.23 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.22 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.22 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.19 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.17 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.13 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.13 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.12 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.11 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.1 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.1 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.07 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.05 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.04 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.04 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.03 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.01 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.99 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.97 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.94 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.94 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.93 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.87 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.8 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.8 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.78 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.73 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.71 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.69 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.63 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.6 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.53 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.52 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.51 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.5 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.49 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.48 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.45 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.43 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.43 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.43 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.43 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.42 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.41 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.4 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.4 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.38 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.36 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.34 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.34 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.33 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.33 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.33 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.32 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.31 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.29 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.28 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.26 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.25 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.23 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.16 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.14 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.11 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.08 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.07 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.98 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.94 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.93 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.92 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.92 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.91 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.83 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.82 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.8 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.74 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.73 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.72 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.66 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.59 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.57 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.56 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.5 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.5 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.47 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.22 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.2 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.13 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.08 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.07 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 97.07 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.06 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.99 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.95 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 96.91 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.89 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.89 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 96.88 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.82 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.74 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.74 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.62 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.58 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.58 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.46 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.46 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.42 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.32 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.21 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.21 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.12 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.12 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 96.09 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.98 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.96 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.95 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.76 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.74 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.65 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.61 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.36 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.64 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.54 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.24 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.23 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.14 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.69 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 93.65 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.6 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.34 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 90.8 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 89.63 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 88.84 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 88.48 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 87.52 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 87.18 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 85.92 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 83.32 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 80.27 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-63 Score=585.05 Aligned_cols=520 Identities=21% Similarity=0.331 Sum_probs=433.0
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
++.+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+ ..+.+|.+.|++++|+|||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~-------------------~~l~gh~~~V~~l~fspdg 69 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLL-------------------QTLTGHSSSVWGVAFSPDG 69 (577)
T ss_dssp EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEE-------------------EEEECCSSCEEEEEECTTS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEE-------------------EEEeCCCCCEEEEEECCCC
Confidence 44569999999999999995 999999999999995 55544 3378999999999999999
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe--------
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-------- 490 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-------- 490 (945)
++||+++.|++|+|||+. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+.........
T Consensus 70 ~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 143 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 143 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEE
T ss_pred CEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCcee
Confidence 999999999999999964 44444 6889999999999999999 899999999999999444333332
Q ss_pred ---------------------------------cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC
Q 002264 491 ---------------------------------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (945)
Q Consensus 491 ---------------------------------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (945)
..|...|.++++++ ++.++++++.|+.|++||. +++....+..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~ 220 (577)
T 2ymu_A 144 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGH 220 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred eeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecC
Confidence 33455666666655 5678999999999999995 45667778888
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
...|.+++|+|++++|++++. ++.|++||. +++.+..+.+|.. .+.+++|+|+++.+++++.|+.|++|+. ++
T Consensus 221 ~~~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~ 293 (577)
T 2ymu_A 221 SSSVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NG 293 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TS
T ss_pred CCCEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CC
Confidence 999999999999999999885 899999996 5677888888876 7999999999999999999999999997 45
Q ss_pred eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCC
Q 002264 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 618 ~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
+.+..+..+ ...|.+++|+|+++.+++++.|+.|++|+.... .+..+.++ ...+.+++|+|+|+.++++..
T Consensus 294 ~~~~~~~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~-----~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 294 QLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGH-----SSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp CEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCC-----SSCEEEEEECTTSSEEEEEET
T ss_pred cEEEEEecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCC-----CCCEEEEEECCCCCEEEEEeC
Confidence 666666655 448999999999999999999999999998654 23344433 346889999999999999888
Q ss_pred CCCccccccCCCCCCCcccC-----CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEE
Q 002264 698 PANCKVERSSPVRPSPIING-----VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY 772 (945)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 772 (945)
.+..+++..... ....+.+ ....++++++.+++++.|+.|++|+... .... .+.. |...|.+++|
T Consensus 365 dg~v~~~~~~~~-~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~----~~~~--~~~~---~~~~v~~~~~ 434 (577)
T 2ymu_A 365 DKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQ--TLTG---HSSSVWGVAF 434 (577)
T ss_dssp TSEEEEEETTCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC----CEEE--EEEC---CSSCEEEEEE
T ss_pred CCEEEEEcCCCC-EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC----CEEE--EecC---CCCCeEEEEE
Confidence 777666543221 1111111 1235789999999999999999999642 1112 2333 8899999999
Q ss_pred ecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-C
Q 002264 773 TNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G 851 (945)
Q Consensus 773 s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d 851 (945)
+||+++|++++.|+.|++|+... +. +. .+.+ |...|++++|+||+++||+++ |
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~-------~~----------------~~-~~~~--~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNG-------QL----------------LQ-TLTG--HSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTS-------CE----------------EE-EEEC--CSSCEEEEEECTTSCEEEEEETT
T ss_pred CCCCCEEEEEcCCCEEEEEECCC-------CE----------------EE-EEcC--CCCCEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999997421 11 11 1334 889999999999999999998 8
Q ss_pred CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceee
Q 002264 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILV 931 (945)
Q Consensus 852 ~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 931 (945)
++|++||. +++++.++.+|...|++++|+| ++++||+|+.||.|++||. +++++..+.+|.+.|++++|+|||++|+
T Consensus 489 ~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 489 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred CEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 89999995 6788999999999999999999 9999999999999999995 6889999999999999999999999999
Q ss_pred eecCCceEEEEe
Q 002264 932 SSGADAQVTLCV 943 (945)
Q Consensus 932 s~~~Dg~i~vWd 943 (945)
|++.|++|++||
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEeCCCEEEEeC
Confidence 999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-63 Score=581.24 Aligned_cols=539 Identities=14% Similarity=0.188 Sum_probs=427.0
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|++... .......+|.+.|++++|||+|+ +||+|+.||+|+|||+.+++.... ..+.+|.
T Consensus 43 l~~~~~~-~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-----------------~~~~~~~ 103 (611)
T 1nr0_A 43 TVPVGSL-TDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-----------------TTIPVFS 103 (611)
T ss_dssp EEETTCS-SCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-----------------EEEECSS
T ss_pred EecCCCc-ccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee-----------------EeecccC
Confidence 8887642 23333446999999999999999 599999999999999976543311 2367899
Q ss_pred ccEEEEEEcCCCCEEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-
Q 002264 407 ISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd- 481 (945)
+.|.+++|+|+|++||+++.+ +.|++|| .++... .+.+|...|.+++|+|++.. .|++|+.|++|++||
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEG 177 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEET
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEEC
Confidence 999999999999999999875 3677776 455444 67899999999999999874 699999999999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------CCCCeEEEEEEcCCCCEEE
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~ 554 (945)
..++.+..+.+|...|.+++|+| ++++|++++.|++|++||+.+++....+. .|...|.+++|+|++++|+
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 88888899999999999999987 66899999999999999999888877763 6888999999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCc--ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
+++. |+.|++||+.+++.+..+..+... ....+.| ++..+++++.||.+++|+..++.....+..|. ..|
T Consensus 256 s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~--~~v 327 (611)
T 1nr0_A 256 SASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHN--KAI 327 (611)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCS--SCE
T ss_pred EEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC--CCE
Confidence 9986 999999999999988887654321 2334455 67899999999999999999998777776554 489
Q ss_pred cEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCC
Q 002264 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (945)
.+++|+|+|++|++++.|++|++||+.++. ....+. ..+...+.+++|++++. ++++...+..+++........
T Consensus 328 ~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~~----~~h~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 328 TALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFP----DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSS----CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSC
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeecc----cCCcceEEEEEECCCCc-EEEEEcCCceEEeecCCcccc
Confidence 999999999999999999999999998873 333221 12345688999998774 455544444444322211100
Q ss_pred C------ccc--CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee
Q 002264 713 P------IIN--GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 713 ~------~~~--~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
. .+. .....++++++.++++ .++.+++|+.. ....+. +...+.+++|+|||++|++++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~~------~~~~~~------~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG------KLTEVP------ISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT------EEEEEE------CSSCEEEEEECTTSCEEEEEET
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEE-eCceEEEEeCC------ceeeee------cCCCceEEEEeCCCCEEEEeCC
Confidence 0 000 1122356777666666 45778888732 122221 5668999999999999999999
Q ss_pred cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccC-c
Q 002264 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT-F 862 (945)
Q Consensus 785 dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~-~ 862 (945)
|++|++|++.... .. ... ..+ |...|++++|||||++||+++ |++|++|++.+ +
T Consensus 469 D~~v~lwd~~~~~------~~--------------~~~--~~~--h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 469 DSKVHVYKLSGAS------VS--------------EVK--TIV--HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp TSEEEEEEEETTE------EE--------------EEE--EEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred CCeEEEEEccCCc------ee--------------eee--ccC--CCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence 9999999874321 00 000 122 889999999999999999999 89999999987 6
Q ss_pred eEEEE--ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce-EE-EEecCC-CcceeEEEecCCcceeeeecCCc
Q 002264 863 KVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VK-SKLKGH-QKRITGLAFSTSLNILVSSGADA 937 (945)
Q Consensus 863 ~~~~~--~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~-~~-~~l~~h-~~~V~~l~~s~dg~~l~s~~~Dg 937 (945)
++... +.+|...|++++|+| ++++||+|+.|++|++||+.++. .+ ..+.+| .+.|++++|+||++ |+|++.|+
T Consensus 525 ~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~ 602 (611)
T 1nr0_A 525 ELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS 602 (611)
T ss_dssp EESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS
T ss_pred ceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCC
Confidence 66554 345999999999999 99999999999999999999865 33 678899 89999999999998 99999999
Q ss_pred eEEEEecC
Q 002264 938 QVTLCVEH 945 (945)
Q Consensus 938 ~i~vWdl~ 945 (945)
+|++||++
T Consensus 603 ~i~lW~~~ 610 (611)
T 1nr0_A 603 NIKFWNVP 610 (611)
T ss_dssp CEEEEECC
T ss_pred CEEEEecc
Confidence 99999974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-60 Score=558.07 Aligned_cols=510 Identities=14% Similarity=0.214 Sum_probs=414.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
+.+.+.+++|+|||++ ||+++ +++|+||++.+++.. ..+.+|...|++++|||+|++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~-------------------~~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDT-------------------EIYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCC-------------------EEECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccC-------------------eEecCCCCceEEEEECCCCcEEE
Confidence 4678899999999994 88887 679999999877654 34789999999999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC----CcEEEEeCCCceEEEecCCCCCEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~v~ 498 (945)
+|+.||+|+|||+.+++... ...+.+|.++|.+++|+|+++ .|++++.+ +.|++|| .++....+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 99999999999997654432 225778999999999999999 78877765 3688887 4566678899999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
+++|+|+. ...|++++.|++|++||....+....+..|...|.+++|+|+|++|++++. |+.|++||..+++...
T Consensus 152 ~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 99998853 236999999999999999888888888999999999999999999999985 9999999999999888
Q ss_pred Eec-------cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC-CCCccEEEEcCCCCEEEEEECC
Q 002264 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 579 ~~~-------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+. +|.. .+.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ...+..+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 874 5655 899999999999999999999999999999999888765421 123445556 78899999999
Q ss_pred CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcc
Q 002264 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (945)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (945)
+.+++|+..++ .....+.+|. ..|.+++|+|+|+.+ +
T Consensus 304 ~~i~~~~~~~~-~~~~~~~gh~-----~~v~~l~~spdg~~l-------------------------------------~ 340 (611)
T 1nr0_A 304 GFINFVNPELG-SIDQVRYGHN-----KAITALSSSADGKTL-------------------------------------F 340 (611)
T ss_dssp CCEEEEETTTT-EEEEEECCCS-----SCEEEEEECTTSSEE-------------------------------------E
T ss_pred CcEEEEeCCCC-CcceEEcCCC-----CCEEEEEEeCCCCEE-------------------------------------E
Confidence 99999999877 4455555544 468999999998877 5
Q ss_pred ccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCC-----------
Q 002264 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN----------- 799 (945)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~----------- 799 (945)
+++.|++|++|++... ..... + ..+|...|.+++|++++ .+++++.|+.+++|++......
T Consensus 341 s~s~D~~v~~Wd~~~~----~~~~~-~--~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 341 SADAEGHINSWDISTG----ISNRV-F--PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp EEETTSCEEEEETTTC----CEEEC-S--SCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred EEeCCCcEEEEECCCC----ceeee-c--ccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 8888899999998742 22111 1 12488999999999776 5889999999999997654321
Q ss_pred --------CCCceeee---eccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceE--E
Q 002264 800 --------PSGKATAS---AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV--M 865 (945)
Q Consensus 800 --------~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~--~ 865 (945)
+++..... ..+.+|+ .++ ... + .|...+.+++|+|||++||+|+ |++|++||+.++.. .
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~-~---~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~ 485 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTE-V---PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV 485 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEE-E---ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eee-e---ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee
Confidence 12211111 1234454 222 111 1 1567899999999999999999 89999999987653 3
Q ss_pred EEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc-ceEEEE--ecCCCcceeEEEecCCcceeeeecCCceEEEE
Q 002264 866 TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKSK--LKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942 (945)
Q Consensus 866 ~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~-~~~~~~--l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vW 942 (945)
.. .+|...|++++|+| ++++||+++.|++|++|++.+ ++++.. +.+|...|++++|+|||++|+|++.|++|+||
T Consensus 486 ~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 486 KT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp EE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEE
Confidence 44 67999999999999 999999999999999999998 666554 34599999999999999999999999999999
Q ss_pred ecC
Q 002264 943 VEH 945 (945)
Q Consensus 943 dl~ 945 (945)
|+.
T Consensus 564 ~~~ 566 (611)
T 1nr0_A 564 NMN 566 (611)
T ss_dssp ETT
T ss_pred ECC
Confidence 973
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-58 Score=585.11 Aligned_cols=559 Identities=13% Similarity=0.164 Sum_probs=464.6
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....+|.+.|++++|||+|+ +||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~ 668 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSD 668 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTT
T ss_pred EEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecC
Confidence 34456999999999999999 59999999999999999987663 36789999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
|++||+|+.||.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|...
T Consensus 669 ~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 669 DSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745 (1249)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred CCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC
Confidence 9999999999999999999987766 677899999999999965544899999999999999 889999999999999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-------------CCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
|.+++|+| ++.++++++.||.|++||+.++.....+... ...+.+++|+|+|+.+++++ +
T Consensus 746 v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~ 818 (1249)
T 3sfz_A 746 VNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----K 818 (1249)
T ss_dssp EEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----T
T ss_pred EEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----C
Confidence 99999987 5689999999999999999987766554322 22678899999999999886 7
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 643 (945)
+.+.+||+.++.....+...+...+.+++|+|++..+++++.||.|++||+.++..+..+..|. ..|.+++|+|+|++
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSS 896 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSE
T ss_pred CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCE
Confidence 8899999999998888774444589999999999999999999999999999999988887664 48999999999999
Q ss_pred EEEEECCCcEEEEECCCCccc-------------------------------cccccCCccccccCcceeeeecccccce
Q 002264 644 LAVTTADNGFKILANAIGLRS-------------------------------LRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~-------------------------------~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
+++++.||.|++|++.+.... .....+.........+.+++|+|+|+.+
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 999999999999997532100 0000111111223568899999999999
Q ss_pred eccCCCCCccccccCCCCCCCcccC-----CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 693 VSSGTPANCKVERSSPVRPSPIING-----VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
+++...+...++..........+.+ ....++++++.+++++.|+.|++|++..... .... .|...|
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~------~~~~---~~~~~v 1047 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQ---AHQETV 1047 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE------ECCB---CCSSCE
T ss_pred EEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce------EEEe---cCCCcE
Confidence 9988877776644433332222221 2345789999999999999999999875221 1222 388999
Q ss_pred EEEEEecCCCeEEEeeecCeEEEEeecCCC----------------CCCCCceeee----eccccccCCCcccccccccC
Q 002264 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNE----------------QNPSGKATAS----AVPQHWLPSSGLLMANDVAG 827 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~----------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~ 827 (945)
.+++|+|++. +++++.||.+++||+.... ..+++...+. ..+++|+..++..... +.+
T Consensus 1048 ~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~ 1125 (1249)
T 3sfz_A 1048 KDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKG 1125 (1249)
T ss_dssp EEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCC
T ss_pred EEEEEcCCCc-EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-ecc
Confidence 9999999775 7889999999999986532 1334444333 2678999998886554 555
Q ss_pred CCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEe---------cCCCCCeeEEEeecCCCceEEEeecCceE
Q 002264 828 VNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF---------MSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (945)
Q Consensus 828 ~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~---------~~h~~~i~~l~~s~~~~~~lasg~~dg~v 897 (945)
|...|++++|||||++||+++ ||.|++||+.+++.+..+ .+|.+.|++++|+| ++++|++++ |.|
T Consensus 1126 --h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~s~~--g~v 1200 (1249)
T 3sfz_A 1126 --HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYL 1200 (1249)
T ss_dssp --CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECT-TSSCEEEES--SSE
T ss_pred --CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECC-CCCEEEECC--CeE
Confidence 899999999999999999999 899999999999887765 57889999999999 899999885 899
Q ss_pred EEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 898 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++||+.+++.+..+.+|...|++++|+|||++|++++.||.|++|++
T Consensus 1201 ~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1201 KWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 99999999999999999999999999999999999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-57 Score=529.89 Aligned_cols=482 Identities=21% Similarity=0.337 Sum_probs=404.9
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+.|.||++.|++++|||||++||+|+.|+.|+|||. +++.++ ++.+|.+.|++++|+|+++ +|++++.|++|++
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~v 83 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKL 83 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE---EEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEE
Confidence 458999999999999999999999999999999995 555554 7889999999999999999 8999999999999
Q ss_pred EeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-----------------------------
Q 002264 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----------------------------- 530 (945)
Q Consensus 480 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------------------------- 530 (945)
||.+++.+..+.+|...|.+++|+| ++++|++++.|+.+++|+......
T Consensus 84 Wd~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 84 WNRNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp EETTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EECCCCEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccc
Confidence 9988999999999999999999987 668999999999999998643211
Q ss_pred -----------eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCE
Q 002264 531 -----------RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (945)
Q Consensus 531 -----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (945)
......+...+.++.++|+++++++++. ++.|++||. +++.+..+.+|.. .+.+++|+|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~~~~~~~~-~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQT 235 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEEEEECCSS-CEEEEEECTTSSC
T ss_pred ceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEEEEecCCC-CEEEEEECCCCCE
Confidence 1122334557888999999999999885 899999995 5777888888876 7999999999999
Q ss_pred EEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCc
Q 002264 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (945)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (945)
+++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.|++|+... +....+.+|. ..
T Consensus 236 l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~-----~~ 305 (577)
T 2ymu_A 236 IASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHS-----SS 305 (577)
T ss_dssp EEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCS-----SC
T ss_pred EEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCC-----CC
Confidence 999999999999996 456677776554 4899999999999999999999999999753 3445555543 46
Q ss_pred ceeeeecccccceeccCCCCCccccccCCCCCCCcccC-----CCCCccCCCCCccccCCCCCCcccccceeecCCccee
Q 002264 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING-----VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRL 754 (945)
Q Consensus 680 i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 754 (945)
+.+++|+|+++.++++..++..+++....... ..+.+ ....++|+++.+++++.|+.+++|+... ....
T Consensus 306 v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----~~~~- 379 (577)
T 2ymu_A 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQ- 379 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----CEEE-
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----CEEE-
Confidence 88999999999999988877776654332211 11111 1245789999999999999999999642 1111
Q ss_pred eecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCce
Q 002264 755 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 834 (945)
Q Consensus 755 ~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 834 (945)
.+.. |...|.+++|+|+|++|++++.|+.|++|+.. ++. +. .+.+ |...|
T Consensus 380 -~~~~---~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-------~~~----------------~~-~~~~--~~~~v 429 (577)
T 2ymu_A 380 -TLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------GQL----------------LQ-TLTG--HSSSV 429 (577)
T ss_dssp -EEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-------CCE----------------EE-EEEC--CSSCE
T ss_pred -EecC---CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-------CCE----------------EE-EecC--CCCCe
Confidence 2333 88899999999999999999999999999732 111 11 1334 88999
Q ss_pred eEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC
Q 002264 835 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (945)
Q Consensus 835 ~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 913 (945)
++++|+||+++|++++ |++|++||. +++.+..+.+|...|++++|+| ++++||+++.|+.|++|| .+++++..+.+
T Consensus 430 ~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~-~~~~~~~~~~~ 506 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTG 506 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEE-TTSCEEEEEEC
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEc-CCCCEEEEEeC
Confidence 9999999999999998 899999996 5678889999999999999999 999999999999999999 47889999999
Q ss_pred CCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 914 HQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 914 h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
|...|++++|+|||++|++++.||.|+|||.
T Consensus 507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 9999999999999999999999999999996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-56 Score=527.01 Aligned_cols=532 Identities=15% Similarity=0.220 Sum_probs=426.6
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC----CcccccccccccccccCcccccccccCCCcc-EEEEEEcC
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~s~ 416 (945)
.|.+.|++++|+|+|++ ||+|+ ++.|+|||+.++ +.. ..+.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~-------------------~~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPV-------------------VQFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSE-------------------EEECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccc-------------------eEEecCCCceEEEEEECc
Confidence 47889999999999994 88877 899999999877 433 347889999 99999999
Q ss_pred --CCCEEEEEECCCcEEEEEccCCc-----ccccceeeccccccEEEEEEecCCCeeEEEEEeCC----CcEEEEeCCCc
Q 002264 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (945)
Q Consensus 417 --~g~~las~~~dg~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d----~~i~vwd~~~~ 485 (945)
++++||+|+.||.|++||+.++. .......+..|...|.+++|+|+++ ++++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999997651 1122336778999999999999999 88888887 6888888 677
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC---eEEEEEEcCC-CCEEEEEeecCC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSKD 561 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~-~~~l~~~~~~~d 561 (945)
.+..+.+|...|.+++|+|.+. ..+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999987532 3899999999999999999888888888888 9999999999 999999985
Q ss_pred CCceEEEEeCCCCceeeEe-c---cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC--CCCccEE
Q 002264 562 GDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRL 635 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v 635 (945)
++.|++||+.+++.+..+ . .|.. .+.+++|+ ++.++++++.||.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 899999999999999988 5 5555 89999999 999999999999999999999999988876521 2356788
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCC--CCC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR--PSP 713 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 713 (945)
.|+ ++.++++++.||.|++||+.++ +....+.+| ..++.+++| |+ ++++..++..+++...... ...
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~-----~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~ 373 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGH-----NKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSN 373 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCC-----SSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCS
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCC-----CCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccC
Confidence 886 8999999999999999999876 555555554 346899999 88 6676666666654433111 000
Q ss_pred cccCCCCCccCCCCCccccCCCCCCcccccceeecCCccee--------------------eecCC-----CCCCccceE
Q 002264 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRL--------------------VTMPE-----STDTSSKVV 768 (945)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--------------------~~~~~-----~~~~~~~v~ 768 (945)
.+ ....+ +++..+++++.|+.+++|++........... ..... ...+...+.
T Consensus 374 ~v--~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 374 LI--VSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CE--EEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred ce--EEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 00 11123 5578899999999999999875432110000 00000 001344555
Q ss_pred EEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEE
Q 002264 769 RLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (945)
Q Consensus 769 ~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la 847 (945)
+++|+ ++.+++++. ||.+++|++ .++......+.+ |...|++++|+||+++|+
T Consensus 451 ~~~~~--~~~l~~~~~~d~~i~~~~~----------------------~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~ 504 (615)
T 1pgu_A 451 AVSLS--QNYVAVGLEEGNTIQVFKL----------------------SDLEVSFDLKTP--LRAKPSYISISPSETYIA 504 (615)
T ss_dssp EEEEC--SSEEEEEETTTSCEEEEET----------------------TEEEEEEECSSC--CSSCEEEEEECTTSSEEE
T ss_pred EEEEc--CCEEEEeecCCCeEEEEEC----------------------CCccccccccCC--ccCceEEEEECCCCCEEE
Confidence 66666 555666665 666666654 333322122444 889999999999999999
Q ss_pred ecC-CCeEEEEeccCceEEEEecC-CCCCeeEEEeecC---------CCceEEEeecCceEEEEecccc-eEEEEecCCC
Q 002264 848 SAT-GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQ 915 (945)
Q Consensus 848 ~~s-d~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~~---------~~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~ 915 (945)
+++ |+.|++||+.+++.+..+.+ |...|++++|+|. ++++||+|+.||.|++||+.++ +++..+.+|.
T Consensus 505 ~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~ 584 (615)
T 1pgu_A 505 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 584 (615)
T ss_dssp EEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST
T ss_pred EcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCc
Confidence 998 89999999999999999998 9999999999993 5789999999999999999998 7899999999
Q ss_pred cceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 916 KRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 916 ~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+.|++++|+||++ |++++.||+|++||++
T Consensus 585 ~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 585 DGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp TCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred cceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 9999999999999 9999999999999984
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-53 Score=512.62 Aligned_cols=559 Identities=12% Similarity=0.104 Sum_probs=402.5
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
....+|.+.|+|++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 45568999999999999999 69999999999999987655432 224788999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE---------
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--------- 487 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~--------- 487 (945)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++|| .+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 343 778999999999999 899999999999999 555543
Q ss_pred --EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------------------CCeEEEEEEc
Q 002264 488 --FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTMLYS 547 (945)
Q Consensus 488 --~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s 547 (945)
..+.+|.+.|.+++|+|. ++..+++|+.||.| +||+++......+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234678999999999985 34689999999999 9999998877776654 3579999999
Q ss_pred CCCCEEEEEeecCCCCceEEEEeCCCCceeeE--ec---cc------------cCcceEEEEEc----CCC-CEEEEEEC
Q 002264 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFD----TTQ-NHFLAVGE 605 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~~~~~~~~----~~~-~~l~~~~~ 605 (945)
|+|++|++++. |+.|++||+++++.+.. +. .| ....+..++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999986 99999999999887653 21 12 12268899995 443 45666766
Q ss_pred C-----CcEEEEECC------------------CCeeEEEeecCCCCCCccEEEEcC----------CCCEEEEEECCCc
Q 002264 606 D-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTADNG 652 (945)
Q Consensus 606 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~sp----------~g~~l~~~~~dg~ 652 (945)
| +.+.+|++. +.+....+... +...|.++.+.+ ++..+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22334444321 223678888765 3457889999999
Q ss_pred EEEEECCCCccccccccCC-ccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC-----CCCCccCCC
Q 002264 653 FKILANAIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING-----VDPTSRSMD 726 (945)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 726 (945)
|++|++.++.........+ ....+...|.+++|++.+..+..+..... ... ...+.+ ....++|++
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~-----~~~---~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA-----QNK---DYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT-----BCC---CCSCCCSBCCCCCCCCCSEE
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc-----cCC---CCcccCCcCCCCcccccccC
Confidence 9999997764333222111 12223356888888765433221110000 000 011221 124568899
Q ss_pred CCccccCCCCCCcccccceeecCC-cceeeecC--CCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCC---
Q 002264 727 KPRTVDDVTDKPKPWQLAEIVDSG-QCRLVTMP--ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP--- 800 (945)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~--- 800 (945)
+.+++++.|++|++||+....... ......+. -..+|...|.+++|+|||+.|++++.||+|+||++.......
T Consensus 448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence 999999999999999997642111 00111111 001488899999999999999999999999999997653110
Q ss_pred -----CCceeeee-cc--------cc-----ccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEecc
Q 002264 801 -----SGKATASA-VP--------QH-----WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM 860 (945)
Q Consensus 801 -----~~~~~~~~-~~--------~~-----~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~ 860 (945)
........ .+ .+ .....+......+.+ |.+.|++++||||| +||+|+ |++|+|||+.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 00000000 00 00 000001111223555 99999999999999 999999 8999999998
Q ss_pred CceEEE-----Eec-CCCCCeeEEEee-----cCC---CceEEEeecCceEEEEec---ccceEEEEecCCC-----cce
Q 002264 861 TFKVMT-----TFM-SPPPASTFLAFH-----PQD---NNIIAIGTEDSTIHIYNV---RVDEVKSKLKGHQ-----KRI 918 (945)
Q Consensus 861 ~~~~~~-----~~~-~h~~~i~~l~~s-----~~~---~~~lasg~~dg~v~vwd~---~~~~~~~~l~~h~-----~~V 918 (945)
++..+. .+. +|.+.|++|+|+ | | +++|++|+.|++|++||+ .+|+++..+.+|. ++|
T Consensus 605 ~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v 683 (902)
T 2oaj_A 605 GPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPI 683 (902)
T ss_dssp TTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCC
T ss_pred CCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCce
Confidence 877654 243 899999999999 8 6 489999999999999999 8899988888774 778
Q ss_pred eEEE-ec----------------------CCcceeeeecCCceEEEEecC
Q 002264 919 TGLA-FS----------------------TSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 919 ~~l~-~s----------------------~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.+++ |+ +++..|+++ |..|+||+++
T Consensus 684 ~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~ 731 (902)
T 2oaj_A 684 HKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLG 731 (902)
T ss_dssp CEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTT
T ss_pred EEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCc
Confidence 8887 65 566666655 7789999974
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-53 Score=546.55 Aligned_cols=514 Identities=15% Similarity=0.226 Sum_probs=434.2
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|.+.|++++|||+|++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++|+.|+.|++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKI 683 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEE
Confidence 3477899999999999999999999999999999999987666 6789999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+++.+..+.+|...|.+++|++..++.++++|+.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99 89999999999999999999998777789999999999999999999999999999999999999999999999986
Q ss_pred cCCCCceEEEEeCCCCceeeEecccc------------CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFR------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||+.++.....+..
T Consensus 764 ----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~- 837 (1249)
T 3sfz_A 764 ----DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT- 837 (1249)
T ss_dssp ----SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-
T ss_pred ----CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-
Confidence 8999999999988776654321 12467789999999999887 68999999999988887763
Q ss_pred CCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcccccc
Q 002264 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (945)
Q Consensus 627 ~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~ 706 (945)
.+...|.+++|+|++.++++++.||.|++|++.++ .....+.+| ..+|.+++|+|+|+.++++..++..+++..
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h-----~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGH-----LSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCC-----SSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCC-----ccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 33458999999999999999999999999999987 455555554 346999999999999999887777666431
Q ss_pred CCCC-----------------------------CCC----------cc---cCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 707 SPVR-----------------------------PSP----------II---NGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 707 ~~~~-----------------------------~~~----------~~---~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
.... ... .. ......++++++.+++++.+|.|++|++.
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~ 991 (1249)
T 3sfz_A 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP 991 (1249)
T ss_dssp HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT
T ss_pred cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC
Confidence 1000 000 00 01123578899999999999999999987
Q ss_pred eeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCC---------------CCCCceee---
Q 002264 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ---------------NPSGKATA--- 806 (945)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~---------------~~~~~~~~--- 806 (945)
... . ...+.. |...|.+++|+|+|+++++++.||.|++|++..... .+++....
T Consensus 992 ~~~----~-~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 1063 (1249)
T 3sfz_A 992 NNR----V-FSSGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF 1063 (1249)
T ss_dssp TTS----C-EEECCC---CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEES
T ss_pred CCc----e-eeeccc---CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEC
Confidence 422 1 122333 889999999999999999999999999999875321 12222221
Q ss_pred eeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCC
Q 002264 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885 (945)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~ 885 (945)
...+.+||..+++.... +.+ |...|++++|+||++++++++ |++|++||+.+++++.++.+|.+.|++++|+| ++
T Consensus 1064 dg~v~vwd~~~~~~~~~-~~~--~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~-dg 1139 (1249)
T 3sfz_A 1064 DGTVKVWNVITGRIERD-FTC--HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DG 1139 (1249)
T ss_dssp SSEEEEEETTTTCCCEE-EEC--CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECS-SS
T ss_pred CCcEEEEECCCCceeEE-Ecc--cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECC-CC
Confidence 12578999998886654 555 899999999999999999999 89999999999999999999999999999999 99
Q ss_pred ceEEEeecCceEEEEecccceEEEEe---------cCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 886 NIIAIGTEDSTIHIYNVRVDEVKSKL---------KGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 886 ~~lasg~~dg~v~vwd~~~~~~~~~l---------~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++||+|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++++ |.|++||+
T Consensus 1140 ~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~ 1205 (1249)
T 3sfz_A 1140 ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNV 1205 (1249)
T ss_dssp SEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCS
T ss_pred CEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEEC
Confidence 99999999999999999999877665 67999999999999999999886 89999996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-51 Score=495.29 Aligned_cols=526 Identities=10% Similarity=0.064 Sum_probs=387.1
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|+... ......+.|...|++++|+| |+ +|++|+.|++|+|||+.+++.+.. +. |.
T Consensus 43 lw~~~~--~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~-------------------~~-~~ 98 (902)
T 2oaj_A 43 IYGQQQ--VEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT-------------------VF-VP 98 (902)
T ss_dssp EECSTT--CEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE-------------------EE-CS
T ss_pred EEeCCC--cEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEE-------------------Ec-CC
Confidence 787654 34455567899999999999 88 599999999999999998876532 22 66
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccc-c-------eeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-H-------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~-~-------~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
+.|++++|+|++++|++|+.||.|++||+.+++.... . ..+.+|.++|.+++|+|++.. .+++|+.|+.|
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-
T ss_pred CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-
Confidence 7899999999999999999999999999998764210 0 235689999999999997533 78999999999
Q ss_pred EEe-CCCceEEEecCC------------------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec----
Q 002264 479 VWE-LSGRKLFNFEGH------------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---- 535 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 535 (945)
+|| .+++.+..+..| ...|.+++|+| +|.+|++++.||+|++||+++++......
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence 999 888888888765 47799999987 56899999999999999999877654311
Q ss_pred -C-------------CCCeEEEEEEc----CCC-CEEEEEeecCC-CCceEEEEeCC------------------CCcee
Q 002264 536 -A-------------PGHWCTTMLYS----ADG-SRLFSCGTSKD-GDSFLVEWNES------------------EGTIK 577 (945)
Q Consensus 536 -~-------------~~~~i~~~~~s----~~~-~~l~~~~~~~d-~~~~i~iwd~~------------------~~~~~ 577 (945)
. +...|.+++|+ |++ ..+++++.+.+ ....+.+|++. +++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce
Confidence 1 23479999995 454 34555543211 12478888842 22333
Q ss_pred eEeccccCcceEEEEEcC----------CCCEEEEEECCCcEEEEECCCCeeEEE-------------------e-----
Q 002264 578 RTYAGFRKKSNGVVQFDT----------TQNHFLAVGEDSQIKFWDMDNVNILTS-------------------T----- 623 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------~----- 623 (945)
+.+.......+..+.+.+ +...+++++.||.|++|++.++..... +
T Consensus 335 ~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~ 414 (902)
T 2oaj_A 335 KIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN 414 (902)
T ss_dssp EEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH
T ss_pred EEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH
Confidence 444321223566676654 344789999999999999977743221 0
Q ss_pred ---------------ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccc--cccCC----ccccccCccee
Q 002264 624 ---------------DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR--AVENP----PFEALRTPIES 682 (945)
Q Consensus 624 ---------------~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~----~~~~~~~~i~~ 682 (945)
...++...+.+++|+|++++|++|+.|++|++||+.++. ... .+... ....+...|.+
T Consensus 415 ~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~-~~~~~~~~~~l~~~~~~~h~~~V~s 493 (902)
T 2oaj_A 415 KLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD-IQDNASFEVNLSRTLNKAKELAVDK 493 (902)
T ss_dssp HHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT-TTTTBCEEEEHHHHTTCSSSCCEEE
T ss_pred HHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc-ccCCceEEeechhhcCCCCCCceeE
Confidence 011233356677889999999999999999999998872 210 01000 00134457999
Q ss_pred eeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCC------------
Q 002264 683 VALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG------------ 750 (945)
Q Consensus 683 v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~------------ 750 (945)
++|+|||+.|| +|+.|++|++|++.......
T Consensus 494 vafspdg~~LA-------------------------------------sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~ 536 (902)
T 2oaj_A 494 ISFAAETLELA-------------------------------------VSIETGDVVLFKYEVNQFYSVENRPESGDLEM 536 (902)
T ss_dssp EEEETTTTEEE-------------------------------------EEETTSCEEEEEEEECCC--------------
T ss_pred EEecCCCCeEE-------------------------------------EEecCcEEEEEEecCccccCccccCCCcccce
Confidence 99999998885 66666777777765431100
Q ss_pred ---------------------------cce-eeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCC
Q 002264 751 ---------------------------QCR-LVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 802 (945)
Q Consensus 751 ---------------------------~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~ 802 (945)
.+. ...+.+ |...|++++||||| +|++++.|++|++||+....
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~---h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~----- 607 (902)
T 2oaj_A 537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA---NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA----- 607 (902)
T ss_dssp -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC---CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE-----
T ss_pred eeeeccccCCccccccccccCCCCCCCccceeEEEEc---CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe-----
Confidence 001 123333 89999999999999 99999999999999864221
Q ss_pred ceeeeeccccccCCCccccccccc-CCCcCCceeEEeec-----CCC---ceEEecC-CCeEEEEec---cCceEEEEec
Q 002264 803 KATASAVPQHWLPSSGLLMANDVA-GVNLEEAVPCIALS-----KND---SYVMSAT-GGKISLFNM---MTFKVMTTFM 869 (945)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~i~~l~~s-----~dg---~~la~~s-d~~i~iwd~---~~~~~~~~~~ 869 (945)
..... .. ..+. + |...|++++|| ||| ++|++|+ |++|++||+ .+|+...++.
T Consensus 608 -~~~~~----------~~--~~~~~g--h~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~ 672 (902)
T 2oaj_A 608 -IIYME----------NI--REISGA--QSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLM 672 (902)
T ss_dssp -EEEEE----------EG--GGTCSS--CCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEE
T ss_pred -EEEEe----------eh--hHhccc--cccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEec
Confidence 11000 00 1132 4 89999999999 886 8999999 899999999 7888888887
Q ss_pred CCC-----CCeeEEE-ee----------------------cCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEE
Q 002264 870 SPP-----PASTFLA-FH----------------------PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (945)
Q Consensus 870 ~h~-----~~i~~l~-~s----------------------~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 921 (945)
+|. +.|.++. |+ + ++.+|+++ +..|+||++.++++.....+|...+.++
T Consensus 673 ~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v 749 (902)
T 2oaj_A 673 DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI-PGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGL 749 (902)
T ss_dssp EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC-CEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEE
T ss_pred CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCC-CeEEEEEe--ccceEEEeCccccceeeEcccceeeeEE
Confidence 764 6787777 66 4 55566655 7789999999999998887788778887
Q ss_pred ---E------ecCCcceeeeecCCceEEEEecC
Q 002264 922 ---A------FSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 922 ---~------~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
. |++++..|++++.||+|++|+++
T Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p 782 (902)
T 2oaj_A 750 SYISTVEKNNDRKNLTVIITLEINGHLRVFTIP 782 (902)
T ss_dssp EEEEEECSSSCEEEEEEEEEEETTSEEEEEETT
T ss_pred EEEEeccccccccCceEEEEEeCCCcEEEEECc
Confidence 6 78999999999999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=476.35 Aligned_cols=500 Identities=14% Similarity=0.166 Sum_probs=392.9
Q ss_pred cccCCCC--C-cceEEeecCCCc-EEEEEEeC--CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccc
Q 002264 327 TWSLDDL--P-RTVAVSLHQGST-VISMDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (945)
Q Consensus 327 ~~~~~~~--~-~~~~~~~~h~~~-V~~v~fsp--~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (945)
+|++... + .......+|.+. |++++|+| +|+ +||+|+.||+|+|||+.+++....... ....
T Consensus 43 v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~-----------~~~~ 110 (615)
T 1pgu_A 43 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEV-----------NVKS 110 (615)
T ss_dssp EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEE-----------EEEE
T ss_pred EEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccc-----------cccc
Confidence 8988753 1 334444559999 99999999 999 599999999999999976521100000 0113
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
.+.+|...|.+++|+|++++|++++.+ +.|++|| .++.+. .+.+|...|.+++|+|+++. .+++++.|+.
T Consensus 111 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~ 184 (615)
T 1pgu_A 111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGS 184 (615)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTE
T ss_pred hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCc
Confidence 466799999999999999999999987 6888888 444444 67789999999999999975 6899999999
Q ss_pred EEEEe-CCCceEEEecCCCC---CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-c---CCCCeEEEEEEcC
Q 002264 477 IKVWE-LSGRKLFNFEGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D---APGHWCTTMLYSA 548 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~i~~~~~s~ 548 (945)
|++|| .+++.+..+.+|.. .|.+++|+|+ ++.+|++++.||.|++||+.+++....+ . .+...|.+++|+
T Consensus 185 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp EEEEETTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-
T ss_pred EEEEeCCCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-
Confidence 99999 88889999999999 9999999874 1689999999999999999999888888 5 788899999999
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc---CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
+++++++++. ++.|++||+.+++.+..+..+. ...+..+.++ +++.+++++.||.|++||+.+++.+..+..
T Consensus 263 ~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 263 DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred CCCEEEEEcC----CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 9999999985 8999999999999998887762 2256667775 889999999999999999999988888876
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccc
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~ 705 (945)
+. ..|.+++| |+ +++++.||.|++|++. .+. . .+...|.+++| +++..++++...+...++.
T Consensus 338 ~~--~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~-----~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 338 HN--KGITALTV-NP---LISGSYDGRIMEWSSS----SMH--Q-----DHSNLIVSLDN-SKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp CS--SCEEEEET-TT---TEEEETTSCEEETTTT----EEE--C-----CCCSCEEEEEC-CSTTCCEEEETTTEEEETT
T ss_pred CC--CCEEEEEe-cC---cEEECCCCeEEEEEch----hhc--C-----cccCceEEEEE-CCCcEEEEEeCCCCEEEEE
Confidence 54 48999999 88 9999999999999986 111 1 23345777777 5555666555544444322
Q ss_pred cCC----------------------------------CCCCCccc--C--CCCCccCCCCCccccCC-CCCCccccccee
Q 002264 706 SSP----------------------------------VRPSPIIN--G--VDPTSRSMDKPRTVDDV-TDKPKPWQLAEI 746 (945)
Q Consensus 706 ~~~----------------------------------~~~~~~~~--~--~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~ 746 (945)
... ......+. . ....+. ++.+++++. |+.+++|++...
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE
T ss_pred cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCc
Confidence 110 00000000 0 001111 778899998 999999999863
Q ss_pred ecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccccc
Q 002264 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 826 (945)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 826 (945)
... ...+.. |...|.+++|+|+|++|++++.||.|++|++.. ++.+.....
T Consensus 478 ~~~----~~~~~~---~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~----------------------~~~~~~~~~ 528 (615)
T 1pgu_A 478 EVS----FDLKTP---LRAKPSYISISPSETYIAAGDVMGKILLYDLQS----------------------REVKTSRWA 528 (615)
T ss_dssp EEE----EECSSC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------TEEEECCSC
T ss_pred ccc----ccccCC---ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC----------------------CcceeEeec
Confidence 221 122333 889999999999999999999999999998642 222221111
Q ss_pred CCCcCCceeEEeecC----------CCceEEecC-CCeEEEEeccCc-eEEEEecCCCCCeeEEEeecCCCceEEEeecC
Q 002264 827 GVNLEEAVPCIALSK----------NDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (945)
Q Consensus 827 ~~~~~~~i~~l~~s~----------dg~~la~~s-d~~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~d 894 (945)
. |...|++++|+| ++++||+++ |+.|++||+.++ +++..+.+|...|++++|+| +++ |++++.|
T Consensus 529 ~--h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d 604 (615)
T 1pgu_A 529 F--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGAD 604 (615)
T ss_dssp C--CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETT
T ss_pred C--CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC-CCC-eEEecCC
Confidence 1 788999999999 999999999 899999999998 78899999999999999999 888 9999999
Q ss_pred ceEEEEeccc
Q 002264 895 STIHIYNVRV 904 (945)
Q Consensus 895 g~v~vwd~~~ 904 (945)
|.|++|++.+
T Consensus 605 ~~v~iw~~~~ 614 (615)
T 1pgu_A 605 ACIKRWNVVL 614 (615)
T ss_dssp SCEEEEEEC-
T ss_pred ceEEEEeeec
Confidence 9999999875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=477.81 Aligned_cols=476 Identities=14% Similarity=0.183 Sum_probs=385.1
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
..+|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++
T Consensus 9 ~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGT
T ss_pred eecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCC
Confidence 345999999999999999 59999999999999999887653 3678999999999999999
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCCCCE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPV 497 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~~~v 497 (945)
+|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.||.|++|| .++ .....+.+|...|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred EEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence 99999999999999999987665 6778999999999999999 899999999999999 555 6778889999999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-CeEEEEEEcC--CCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.+++|+|. ++..+++++.||.|++||+..+.....+..+. ..+.+++|+| ++.++++++. ++.|++||+.++
T Consensus 144 ~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~ 218 (814)
T 3mkq_A 144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTK 218 (814)
T ss_dssp EEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTT
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCC
Confidence 99999873 45799999999999999998888777776655 7899999999 9999999885 899999999999
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC--EEEEEECCCc
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNG 652 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~--~l~~~~~dg~ 652 (945)
+.+..+.+|.. .+.+++|+|+++.+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+|. ++++++ ++.
T Consensus 219 ~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~-~~~ 294 (814)
T 3mkq_A 219 SCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGF-DNG 294 (814)
T ss_dssp EEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEE-TTE
T ss_pred cEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEe-CCC
Confidence 99999988876 799999999999999999999999999999999988876654 899999999987 455554 667
Q ss_pred EEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcccc
Q 002264 653 FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVD 732 (945)
Q Consensus 653 i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 732 (945)
+.+|++..+ ...+.++|+|+.++++.......- +...
T Consensus 295 ~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~-------------------------~~~~ 331 (814)
T 3mkq_A 295 FTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAASD-------------------------IFTA 331 (814)
T ss_dssp EEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTTC-------------------------EEEE
T ss_pred EEEEEcCCC------------------CceeEECCCCCEEEECccccccee-------------------------eeee
Confidence 889987654 224678888888765433211000 0000
Q ss_pred CCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeecccc
Q 002264 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (945)
Q Consensus 733 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 812 (945)
... ..|++...... ......+.. +...+.+++|+|+|+++++++ +|.+.+|++...
T Consensus 332 ~~~---~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~---------------- 387 (814)
T 3mkq_A 332 VIR---GNEEVEQDEPL-SLQTKELGS---VDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW---------------- 387 (814)
T ss_dssp ECC---SCCCCCSSSCB-CCCCEEECC---CSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT----------------
T ss_pred ecc---cccccccCccc-eeeeecCCC---CccCCceeEECCCCCEEEEec-CCEEEEEECccc----------------
Confidence 000 01111110000 011111122 566789999999999888887 899999974210
Q ss_pred ccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCC---ceE
Q 002264 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN---NII 888 (945)
Q Consensus 813 ~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~---~~l 888 (945)
... +.+.+.+++|+|||+++|+++ +++|++|+ .+.+|...+.++.|+| ++ .+|
T Consensus 388 ------------~~~--~~~~i~~~~~spdg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~-dg~~~~~l 444 (814)
T 3mkq_A 388 ------------RNK--AFGKCQDFVWGPDSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAI-DRLFSGAL 444 (814)
T ss_dssp ------------EEE--EEEECSEEEECTTSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCC-CEEECSSS
T ss_pred ------------ccc--CCCceEEEEEeCCCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCc-cceecceE
Confidence 001 456788999999999999998 88999995 3456788899999999 77 588
Q ss_pred EEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeee------cCCceEEEE
Q 002264 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS------GADAQVTLC 942 (945)
Q Consensus 889 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~------~~Dg~i~vW 942 (945)
++++.|+.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|
T Consensus 445 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 445 LGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp EEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 8899999999999999999999998865 89999999999999 777766665
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-46 Score=413.12 Aligned_cols=285 Identities=21% Similarity=0.373 Sum_probs=263.3
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
..+|.++|++++|+|+++ +|++|+.||+|+|||+.+++.. ..+.+|.+.|.+++|+|+|+
T Consensus 104 l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~-------------------~~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFE-------------------RTLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCC-------------------EEECCCSSCEEEEEECTTSS
T ss_pred ecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEE-------------------EEEeccCCcEEEEEEcCCCC
Confidence 346889999999999999 5999999999999999988765 33788999999999999999
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
+|++|+.|++|++||+.+++.++ .+.+|...|.+++|+|+++ ++++|+.|++|++|| .++.++..+.+|...|.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence 99999999999999999887665 6789999999999999999 899999999999999 88999999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC--------------------CCEEEEEee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--------------------GSRLFSCGT 558 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~ 558 (945)
++++++ ++.++++|+.|++|++||+.+......+..|...|.+++|+|+ +.++++++.
T Consensus 239 ~~~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 239 MVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EEEECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 999876 6689999999999999999999999899999999999999996 668888885
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
|+.|++||++++..+..+.+|.. .+.+++|+|++.+|++|+.||.|++||+.+++++..+..|.. .|.+++|+
T Consensus 317 ----D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~ 389 (410)
T 1vyh_C 317 ----DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFH 389 (410)
T ss_dssp ----TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEEC
T ss_pred ----CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEc
Confidence 99999999999999999999877 899999999999999999999999999999999998887654 89999999
Q ss_pred CCCCEEEEEECCCcEEEEEC
Q 002264 639 KEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~ 658 (945)
|++.+|++|+.||+|++|++
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC-
T ss_pred CCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999986
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=440.18 Aligned_cols=441 Identities=15% Similarity=0.220 Sum_probs=360.6
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+.+.+|.+.|.+++|+|+|++||+|+.||.|++||+.+++.+. .+.+|.++|.+++|+|+++ +|++|+.||.|++
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v 81 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 4578899999999999999999999999999999999987666 6778999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcC-CCCEEEEE
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~ 556 (945)
|| .+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||++++ .....+..+...|.+++|+| ++..++++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 99 88999999999999999999987 5679999999999999999887 55567778889999999999 88899988
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC--CCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+. ++.|++||+.++.....+..+....+..++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.+
T Consensus 160 ~~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~ 233 (814)
T 3mkq_A 160 CL----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (814)
T ss_dssp ET----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEE
Confidence 85 899999999999888888877755799999999 999999999999999999999999988876644 8999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCc
Q 002264 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (945)
++|+|+++++++++.||.|++||+.++ .....+..+. ..+.+++|+|+|..++
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~~~--------------------- 286 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGL-----ERSWCIATHPTGRKNY--------------------- 286 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSS-----SSEEEEEECTTCGGGE---------------------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCC-----CcEEEEEEccCCCceE---------------------
Confidence 999999999999999999999999887 4444444432 3688999999987531
Q ss_pred ccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeE-EEEee
Q 002264 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ-KLWKW 793 (945)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i-~lw~~ 793 (945)
++.+.++.+.+|++.. ....+.++|+|+.+++++.+... .++.
T Consensus 287 ---------------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 330 (814)
T 3mkq_A 287 ---------------IASGFDNGFTVLSLGN--------------------DEPTLSLDPVGKLVWSGGKNAAASDIFT- 330 (814)
T ss_dssp ---------------EEEEETTEEEEEECSC--------------------CSCCEEECSSSEEEEECCTTSCTTCEEE-
T ss_pred ---------------EEEEeCCCEEEEEcCC--------------------CCceeEECCCCCEEEECcccccceeeee-
Confidence 2333345566666542 12346788899888877655321 0110
Q ss_pred cCCCCCCCCceeeeeccccccCCCcccccc---cccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecC
Q 002264 794 HRNEQNPSGKATASAVPQHWLPSSGLLMAN---DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS 870 (945)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~ 870 (945)
......|+...+..... .+.. +...+.+++|+|||+++++++++.+.+|++......
T Consensus 331 -------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~----- 390 (814)
T 3mkq_A 331 -------------AVIRGNEEVEQDEPLSLQTKELGS--VDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNK----- 390 (814)
T ss_dssp -------------EECCSCCCCCSSSCBCCCCEEECC--CSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEE-----
T ss_pred -------------eecccccccccCccceeeeecCCC--CccCCceeEECCCCCEEEEecCCEEEEEECcccccc-----
Confidence 00011233333332211 1222 567789999999999999999999999998755432
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCc---ceeeeecCCceEEEEecC
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL---NILVSSGADAQVTLCVEH 945 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg---~~l~s~~~Dg~i~vWdl~ 945 (945)
+.+.+.+++|+| +++++|+++.+|.|++|+ .+.+|...|.+++|+||| .+|++++.|++|++||+.
T Consensus 391 ~~~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 391 AFGKCQDFVWGP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWD 459 (814)
T ss_dssp EEEECSEEEECT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTT
T ss_pred CCCceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECC
Confidence 235688999999 899999999999999996 345688899999999999 699999999999999973
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=355.86 Aligned_cols=286 Identities=16% Similarity=0.233 Sum_probs=259.6
Q ss_pred cCCCcEEEEEEeCC----CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 342 HQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 342 ~h~~~V~~v~fsp~----g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
+|.+.|++++|+|+ +. +|++|+.|++|+||++.+++... ...+.+|...|.+++|+++
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~-----------------~~~l~gh~~~v~~~~~~~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDL-----------------QWSLEGHQLGVVSVDISHT 91 (321)
T ss_dssp SSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECSS
T ss_pred cCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeee-----------------eeeeccCCCCEEEEEECCC
Confidence 59999999999985 45 69999999999999997765321 1237799999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
+.++++|+.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++....+..|...
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 9999999999999999999987665 6678889999999999999 899999999999999 888888999999999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
|.+++|+| ++++|++|+.||.|++||+++++....+..+...|.+++|+|++++|++++. |+.|++||+++++.
T Consensus 167 v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 167 ILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHANL 240 (321)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCCE
T ss_pred EEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcce
Confidence 99999977 6689999999999999999999988899999999999999999999999985 89999999999999
Q ss_pred eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
...+.+|.. .+.+++|+|++.+|++++.||.|++||+.+++++..+..+. ..|.+++|+|+|++|++++.||.|++|
T Consensus 241 ~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 241 AGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999887 79999999999999999999999999999999999887654 489999999999999999999999999
Q ss_pred ECC
Q 002264 657 ANA 659 (945)
Q Consensus 657 ~~~ 659 (945)
|+.
T Consensus 318 d~p 320 (321)
T 3ow8_A 318 DCP 320 (321)
T ss_dssp ECC
T ss_pred eCC
Confidence 963
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=354.05 Aligned_cols=290 Identities=19% Similarity=0.284 Sum_probs=258.4
Q ss_pred eEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
....+ +|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+. .+..|...|.+++|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 106 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYA 106 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEEC
T ss_pred hheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEEC
Confidence 34444 5999999999999999 59999999999999998887653 266799999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcc-cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++.+..+.+|
T Consensus 107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 9999999999999999999987642 233346779999999999998874 78999999999999 889999999999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
...|.+++|+| ++.++++|+.|+.|++||++++.....+..|...|.+++|+|++++|++++. |+.|++||+++
T Consensus 184 ~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~ 257 (340)
T 1got_B 184 TGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRA 257 (340)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTT
T ss_pred CCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCC
Confidence 99999999987 5689999999999999999999999999999999999999999999999985 89999999999
Q ss_pred CceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCc
Q 002264 574 GTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 574 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
++.+..+.... ...+.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++|+.|+.
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSC
T ss_pred CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEcCCcc
Confidence 88877765332 2258899999999999999999999999999999988887665 48999999999999999999999
Q ss_pred EEEEE
Q 002264 653 FKILA 657 (945)
Q Consensus 653 i~iw~ 657 (945)
|++||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=355.33 Aligned_cols=294 Identities=17% Similarity=0.247 Sum_probs=260.7
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
...+.+ +|.+.|+|++|+|+|+ +||+|+.||+|+|||..+++... .+..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEE
Confidence 334444 5999999999999998 59999999999999998876553 25568889999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcc---cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~ 490 (945)
+|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++|| .+++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 123335678999999999999999 899999999999999 889999999
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
.+|...|.+++++|.+++.+|++|+.||.|++||+++++....+..|...|.+++|+|++.+|++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999998877889999999999999999999999999999999999999999999999986 89999999
Q ss_pred CCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC
Q 002264 571 ESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 571 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
+++++.+..+..+. ...+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEEcC
Confidence 99988777665433 2257889999999999999999999999999999888887654 48999999999999999999
Q ss_pred CCcEEEEE
Q 002264 650 DNGFKILA 657 (945)
Q Consensus 650 dg~i~iw~ 657 (945)
||+|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=351.58 Aligned_cols=293 Identities=15% Similarity=0.242 Sum_probs=258.0
Q ss_pred ceEEEecCCCCCEEEEEeeec--CCccEEEEEEcCCeEEEEEccCCCee--EEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 485 RKLFNFEGHEAPVYSICPHHK--ENIQFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.....+.+|.+.|++++|++. .++.+|++|+.|++|++||+...... ..+.+|...|.+++|++++..+++++.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~-- 100 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL-- 100 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET--
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC--
Confidence 345667789999999999874 24679999999999999999876543 357788889999999999999999986
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
|+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++.||.|++|++.+++....+..+.. .|.+++|+|+
T Consensus 101 --D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spd 175 (321)
T 3ow8_A 101 --DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPD 175 (321)
T ss_dssp --TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTT
T ss_pred --CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCC
Confidence 99999999999999999887766 678899999999999999999999999999998888876654 7999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCC
Q 002264 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (945)
Q Consensus 641 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (945)
|++|++++.||.|++||+.++. .+..
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~-~~~~----------------------------------------------------- 201 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGK-LLHT----------------------------------------------------- 201 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTE-EEEE-----------------------------------------------------
T ss_pred CCEEEEEcCCCeEEEEECCCCc-EEEE-----------------------------------------------------
Confidence 9999999999999999987551 0000
Q ss_pred CccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCC
Q 002264 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (945)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~ 800 (945)
T Consensus 202 -------------------------------------------------------------------------------- 201 (321)
T 3ow8_A 202 -------------------------------------------------------------------------------- 201 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEE
Q 002264 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA 879 (945)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~ 879 (945)
+.+ |...|.+++|+|++++|++|+ |++|++||+.+++...++.+|...|.+++
T Consensus 202 ------------------------~~~--h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 202 ------------------------LEG--HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp ------------------------ECC--CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred ------------------------Ecc--cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 111 667788999999999999998 88999999999999999999999999999
Q ss_pred eecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 880 ~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
|+| ++.+|++|+.||+|+|||+.+++++..+.+|.+.|.+++|+|++++|++++.||+|+|||.|
T Consensus 256 ~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999 89999999999999999999999999999999999999999999999999999999999975
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=349.43 Aligned_cols=295 Identities=21% Similarity=0.285 Sum_probs=256.4
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.+|.+.|++++|+|++..+|++|+.|++|++|++.+....... ....+.+|...|.+++|+|+|++
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEECTTSSE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEECCCCCE
Confidence 3599999999999987447999999999999998654322100 11347899999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~ 500 (945)
|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||..+.++..+.+|...|.++
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV 154 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEE
Confidence 9999999999999999987665 6789999999999999999 8999999999999998888999999999999999
Q ss_pred EeeecC----CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 501 CPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 501 ~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
++.|.. ++..+++++.|+.|++||++..+....+..|...|.+++|+|++++|++++. |+.|++||+.+++.
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAKKA 230 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCcE
Confidence 998743 3458999999999999999998888888999999999999999999999985 99999999999999
Q ss_pred eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC------CCCCCccEEEEcCCCCEEEEEECC
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE------GGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+..+ .+...+.+++|+|||++|++|+.|
T Consensus 231 ~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 231 MYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp EEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence 98887643 68999999999998888765 5999999988777766432 123468899999999999999999
Q ss_pred CcEEEEECCCC
Q 002264 651 NGFKILANAIG 661 (945)
Q Consensus 651 g~i~iw~~~~~ 661 (945)
|.|++|++.++
T Consensus 308 g~i~vWd~~t~ 318 (319)
T 3frx_A 308 NVIRVWQVMTA 318 (319)
T ss_dssp SCEEEEEEEEC
T ss_pred ceEEEEEEeec
Confidence 99999998754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=343.46 Aligned_cols=286 Identities=17% Similarity=0.290 Sum_probs=251.0
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.+|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~ 69 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNW 69 (304)
T ss_dssp EEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTE
T ss_pred cCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeCCCCE
Confidence 35999999999999999 59999999999999999887653 36679999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~~~v~ 498 (945)
|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++|| .++ .....+.+|...|.
T Consensus 70 l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~ 144 (304)
T 2ynn_A 70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (304)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred EEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcEE
Confidence 9999999999999999987765 6789999999999999999 899999999999999 655 45677899999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcC--CCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
+++|+|. ++..|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++. |+.|++||+++++
T Consensus 145 ~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKS 219 (304)
T ss_dssp EEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETTTTE
T ss_pred EEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCCCCc
Confidence 9999875 45799999999999999998877766554 3456788999987 7789999985 9999999999999
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC--EEEEEECCCcE
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGF 653 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~--~l~~~~~dg~i 653 (945)
.+..+.+|.. .+..++|+|+++.|++|+.||.|++||+.+++.+..+..+. ..+.+++|+|++. ++++|+.| .+
T Consensus 220 ~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg~~~-g~ 295 (304)
T 2ynn_A 220 CVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGFDN-GF 295 (304)
T ss_dssp EEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEEETT-EE
T ss_pred cceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEecCC-ce
Confidence 9999999987 79999999999999999999999999999999999887654 3789999999875 57777655 57
Q ss_pred EEEECCC
Q 002264 654 KILANAI 660 (945)
Q Consensus 654 ~iw~~~~ 660 (945)
.+|++.+
T Consensus 296 ~~~~~~~ 302 (304)
T 2ynn_A 296 TVLSLGN 302 (304)
T ss_dssp EEEECC-
T ss_pred EEEEecc
Confidence 7777754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=359.13 Aligned_cols=246 Identities=20% Similarity=0.322 Sum_probs=229.7
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+.+|.++|++++|+|++.+|++|+.||+|++||+.+++..+ .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 67899999999999999999999999999999999987766 7889999999999999999 899999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+++++..+.+|...|.+++|+| ++.+|++|+.|++|++||++++.....+..|...|.++.++|++.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 78889999999999999999987 5579999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC--------------------CCEEEEEECCCcEEEEECCCCeeE
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--------------------QNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
|+.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.||.|++||+.++.++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 89999999999999999988877 8999999996 678999999999999999999999
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+..|.. .|.+++|+|+|++|++++.||.|++||+.++
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 98877654 8999999999999999999999999998655
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=358.99 Aligned_cols=300 Identities=17% Similarity=0.265 Sum_probs=258.8
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
.+.+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++... .+.+|...|.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAF 116 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEE
T ss_pred EEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEE
Confidence 344544 59999999999999995 9999999999999998887653 36789999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcc----cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
+|+|++||+|+.|+.|++|++.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++|| .+++.+..
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999975421 2223357799999999999998654 699999999999999 88888877
Q ss_pred e-----cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 490 F-----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 490 ~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
+ .+|...|.+++|++. ++.++++|+.|++|++||++. ......+..|...|.+++|+|++++|++++. |
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D 270 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----D 270 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----S
T ss_pred eecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----C
Confidence 7 679999999999764 568999999999999999984 4667788889999999999999999999986 9
Q ss_pred ceEEEEeCCCCceeeEeccccC------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec--CCCCCCccEE
Q 002264 564 SFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--EGGLPNLPRL 635 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v 635 (945)
+.|++||+++++.+..+..+.. ..+.+++|+|+++++++|+.||.|++||..+++.+..+.. .+|...|.++
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 9999999999998888765432 1378899999999999999999999999999988877632 2455689999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+|+|+|++|++|+.||+|++|++...
T Consensus 351 ~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 351 GLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999999999999999999765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=352.05 Aligned_cols=293 Identities=15% Similarity=0.163 Sum_probs=238.2
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeC------cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..|...|++++|||||+ +||+|+. |++|++|+..++...... .....+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCCCCCEEEEEE
Confidence 35999999999999999 5999987 678999988776543210 1124568899999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccc-eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~ 492 (945)
+|++++| +++.||+|+|||+.+++..... ....+|...|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 5778999999999988654322 23458999999999999999 899999999999999 88999999999
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec--CCCCeEEEEEEcCCCC-EEEEEeecCCCCceEEEE
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iw 569 (945)
|...|++++|++..+ .++++++.||+|++||+++++....+. .+...+.+++|+|++. +|++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999987643 578999999999999999887765543 4556799999999864 5666664 8899999
Q ss_pred eCCCCceeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCEEEEE
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT 647 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~ 647 (945)
|+++++.+..+.++.. .+.+++|+|++ ++|++|+.||.|++||+++++++..+ +|...|++++|+| ++.+|+++
T Consensus 255 d~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 255 NIKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp ESSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEE
T ss_pred ECCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEE
Confidence 9999999999998877 79999999987 57889999999999999999887765 3455899999999 89999999
Q ss_pred ECCCcEEEEECCCC
Q 002264 648 TADNGFKILANAIG 661 (945)
Q Consensus 648 ~~dg~i~iw~~~~~ 661 (945)
+.||+|++|++.+.
T Consensus 331 s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 331 GWDHKVLHHHLPSE 344 (357)
T ss_dssp ETTSCEEEEECC--
T ss_pred cCCCeEEEEECCCC
Confidence 99999999999765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=342.32 Aligned_cols=248 Identities=16% Similarity=0.219 Sum_probs=226.0
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 477899999999999999999999999999999999887665 6778999999999999999 89999999999999
Q ss_pred e-CCC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 481 E-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 481 d-~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
| .++ .....+.+|...|.++.|++. ..+++++.|++|++||+.++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 443 356778899999999999764 25899999999999999999999999999999999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
++. |+.|++||++++.....+.+|.. .+.+++|+|++++|++|+.||.|++||+++++.+..+..+.....|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 985 99999999999999999999877 8999999999999999999999999999999888877655555579999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+|+|+|++|++|+.||.|++||+.++
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccC
Confidence 99999999999999999999998765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=343.58 Aligned_cols=300 Identities=16% Similarity=0.241 Sum_probs=245.4
Q ss_pred eEEee-cCCC-cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 337 VAVSL-HQGS-TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 337 ~~~~~-~h~~-~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
....+ +|.+ .|++++|+|+|+ +||+|+.|++|+|||+.+++.... .....+|...|.+++|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVAW 69 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEEE
T ss_pred EeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEEE
Confidence 34444 4877 999999999999 599999999999999987653311 1224689999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC---ceEEEe
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNF 490 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---~~~~~~ 490 (945)
+|+|++||+|+.|++|++|++.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++|| ..+ ..+..+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 99999999999999999999987642 22336889999999999999999 899999999999999 554 346678
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe--eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
.+|...|.+++|+| ++.+|++++.|+.|++||.+.... ...+..|...|.+++|+|++++|++++. |+.|++
T Consensus 147 ~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~i 220 (345)
T 3fm0_A 147 NSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRI 220 (345)
T ss_dssp CCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred cCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEE
Confidence 89999999999987 557999999999999999987653 3567888899999999999999999986 999999
Q ss_pred EeCCCC---------------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe----eEE---EeecC
Q 002264 569 WNESEG---------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN----ILT---STDAE 626 (945)
Q Consensus 569 wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~---~~~~~ 626 (945)
||.... +.+..+.+.+...+..++|+|++..+++++.|+.|++|+...+. ... .....
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence 996321 23445555444579999999999999999999999999987643 111 11123
Q ss_pred CCCCCccEEEEcCCC-CEEEEEECCCcEEEEECCCCc
Q 002264 627 GGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 627 ~~~~~v~~v~~sp~g-~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+|...|++++|+|++ .+||+++.||+|++|++.+++
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 455689999999987 599999999999999998774
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=342.93 Aligned_cols=297 Identities=13% Similarity=0.123 Sum_probs=238.1
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCccccccccccccccc-CcccccccccCCCccEEEEEEcCCCCE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAAC-SLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
.|...|.+++|+|||+ +|++|+ |+++++||..... |+.... ...........|...|.+++|+|++ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 3667899999999999 588777 8888888742110 000000 0000011123466789999999985 6
Q ss_pred EEEEECCCcEEEEEccCCcccccc-eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++|| .+++++..+.+|...|+
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998766432 23558999999999999999 899999999999999 88999999999999999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--CCCeEEEEEEcCCC-CEEEEEeecCCCCceEEEEeCCCCc
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
+++|++.+ ..+|++++.|++|++||+++++....+.. +...+.+++|+|++ +++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 99998753 35889999999999999999888776643 45578999999965 56667764 8999999999999
Q ss_pred eeeEeccccCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC-EEEEEECCCcE
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGF 653 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~l~~~~~dg~i 653 (945)
.+..+.+|.. .+.+++|+|++ ++|++|+.||.|++||+.++++.. +. +|...|++++|+|+++ +|++++.|++|
T Consensus 249 ~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 249 CVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999987 89999999998 578999999999999999988654 33 4455899999999886 67799999999
Q ss_pred EEEECCCC
Q 002264 654 KILANAIG 661 (945)
Q Consensus 654 ~iw~~~~~ 661 (945)
++|++.+.
T Consensus 325 ~~w~v~~~ 332 (344)
T 4gqb_B 325 VHHVVPTE 332 (344)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=330.51 Aligned_cols=288 Identities=18% Similarity=0.289 Sum_probs=254.1
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
...+|.+.|++++|+|+|+ +|++|+.||.|+||++.+++.. ..+.+|...|.+++|+|++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~-------------------~~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFE-------------------KTISGHKLGISDVAWSSDS 77 (312)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEE-------------------EEECCCSSCEEEEEECTTS
T ss_pred EEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccc-------------------hhhccCCCceEEEEEcCCC
Confidence 3445999999999999999 5999999999999999887655 2367899999999999999
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v 497 (945)
++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++|| .+++.+..+..|..+|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 152 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence 999999999999999999987665 6778999999999999999 899999999999999 8889999999999999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
.+++|++ ++.++++++.||.|++||+++++....+. .+...+..++|+|+++++++++. ++.|++||+.+++.
T Consensus 153 ~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 153 SAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKC 226 (312)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEE
T ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcE
Confidence 9999977 56899999999999999999888776654 34557999999999999999985 89999999999999
Q ss_pred eeEeccccCcc--eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE--CCCc
Q 002264 577 KRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--ADNG 652 (945)
Q Consensus 577 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~--~dg~ 652 (945)
+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+++++++++ .|+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~~d~~ 304 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALENDKT 304 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECTTTCC
T ss_pred EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEccCCcc
Confidence 99998876532 2223344678899999999999999999999998887664 4899999999999999997 6999
Q ss_pred EEEEECC
Q 002264 653 FKILANA 659 (945)
Q Consensus 653 i~iw~~~ 659 (945)
|++|+.+
T Consensus 305 i~~W~~d 311 (312)
T 4ery_A 305 IKLWKSD 311 (312)
T ss_dssp EEEEECC
T ss_pred EEEecCC
Confidence 9999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=351.92 Aligned_cols=302 Identities=15% Similarity=0.239 Sum_probs=247.8
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEc----CCCCcccccccccccccccCccc-ccccccCCCccEEEEE
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL----AMRDRLVSKPFKIWDMAACSLPF-QASIFKDVPISVSRVA 413 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~i~ 413 (945)
....|.+.|++++|+|+|+.+||+|+.||.|++|++ .+++.+..... ...+. .++ ......+|.+.|++++
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELR---HPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEE---CCCCCC------CBCEEEEE
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccc---ccccccccccCCCCceEEEE
Confidence 334477999999999999834999999999999999 87763100000 00000 000 0011234788999999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC
Q 002264 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (945)
Q Consensus 414 ~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~ 492 (945)
|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.+..+..
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence 999999999999999999999 4454444 6778999999999999999 899999999999999 88888888888
Q ss_pred CCCC---------------EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 493 HEAP---------------VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 493 ~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
+... +.+++|++. ..+++++.||.|++||+.+......+..+...|.+++|+|++++|++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 8776 889999874 4689999999999999999988888888999999999999999999998
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
. ++.|++||+.+++....+..|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|
T Consensus 267 ~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~ 338 (425)
T 1r5m_A 267 D----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRI 338 (425)
T ss_dssp T----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEE
T ss_pred C----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEE
Confidence 5 89999999999999999988776 79999999999 999999999999999999999988886654 8999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC
Q 002264 638 SKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+|++++|++++.||.|++|++.++
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCC
Confidence 999999999999999999999765
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=330.54 Aligned_cols=249 Identities=18% Similarity=0.310 Sum_probs=224.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|.+.|.+++|+|++++|++|+.||.|++||+.++..++ .+..|..+|.+++|+|+++ +|++|+.|++|++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~v 81 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEE
Confidence 4578899999999999999999999999999999999987665 6778999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEecCCCCeEEEEEEcC-CCCEEEEE
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~ 556 (945)
|| .+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||++++.. ...+..|...|.+++|+| ++..|+++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 99 88999999999999999999987 558999999999999999988744 456788899999999999 67889998
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC--CCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+. |+.|++||++++.....+..++...+..+.++| ++.+|++++.||.|++||+++++++..+..|.. .|.+
T Consensus 160 s~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~ 233 (304)
T 2ynn_A 160 CL----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (304)
T ss_dssp ET----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEE
Confidence 85 999999999988877777655545788888876 678999999999999999999999999987654 8999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++|+|++++|++++.||+|++||..++
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999999876
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=335.92 Aligned_cols=249 Identities=14% Similarity=0.168 Sum_probs=224.1
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
.+.+|.+.|.+++|+|++++||+|+.||+|++||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 477899999999999999999999999999999998876655 5667899999999999999 89999999999999
Q ss_pred e-CCC------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC--CCC
Q 002264 481 E-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGS 551 (945)
Q Consensus 481 d-~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~ 551 (945)
+ ... .....+.+|...|.+++|++ ++..|++++.|++|++||+++++....+..|...|.++.++| +++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 8 322 34567778999999999987 457899999999999999999999999999999999999987 568
Q ss_pred EEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
+|++++. |+.|++||+++++.+..+.+|.. .+.+++|+|+++.|++++.|+.|++||++.+..+..+..+.....
T Consensus 212 ~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 9999985 89999999999999999998877 899999999999999999999999999999988877766554457
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.+++|+|+|++|++|+.|+.|++||+.++
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 889999999999999999999999999765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=347.38 Aligned_cols=341 Identities=10% Similarity=0.101 Sum_probs=276.4
Q ss_pred cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCcc-EEEEEEcCCeEEEEEc----cCCC------eeEEecC-------
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLY----DTMG------SRVDYDA------- 536 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~----~~~~------~~~~~~~------- 536 (945)
.+.+|+ ...........|...|.+++|+| ++. +|++++.||.|++||+ .++. ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNP--LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECS--SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccchhhhhheeeeeccCceEEEEECC--CCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 345777 44444444455779999999987 457 9999999999999999 7777 3444433
Q ss_pred ---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 537 ---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 537 ---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 613 (945)
+...|.+++|+|++++|++++. ++.|++|| .+++.+..+..|.. .+.+++|+|++++|++++.||.|++||
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVE----NGELRLWN-KTGALLNVLNFHRA-PIVSVKWNKDGTHIISMDVENVTILWN 177 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEET----TSCEEEEE-TTSCEEEEECCCCS-CEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEe-CCCCeeeeccCCCc-cEEEEEECCCCCEEEEEecCCeEEEEE
Confidence 4668999999999999999985 88999999 67888888888876 899999999999999999999999999
Q ss_pred CCCCeeEEEeecCCCCC-------------CccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcc
Q 002264 614 MDNVNILTSTDAEGGLP-------------NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (945)
Q Consensus 614 ~~~~~~~~~~~~~~~~~-------------~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i 680 (945)
+.+++.+..+..+.... .+.+++|+|++ .+++++.||.|++|++.++. ....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-~~~~------------- 242 (425)
T 1r5m_A 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-PTGK------------- 242 (425)
T ss_dssp TTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-CSEE-------------
T ss_pred CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-eeee-------------
Confidence 99999988887654311 18899999875 57888889999999987641 1100
Q ss_pred eeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCC
Q 002264 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPES 760 (945)
Q Consensus 681 ~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 760 (945)
+.
T Consensus 243 ----------------------------------------------------------------------------~~-- 244 (425)
T 1r5m_A 243 ----------------------------------------------------------------------------LI-- 244 (425)
T ss_dssp ----------------------------------------------------------------------------EC--
T ss_pred ----------------------------------------------------------------------------ec--
Confidence 00
Q ss_pred CCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeec
Q 002264 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (945)
Q Consensus 761 ~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s 840 (945)
.|...|.+++|+|+++.+++++.||.|++|++... +... .+.+ |...|.+++|+
T Consensus 245 -~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~-~~~~--~~~~i~~~~~~ 298 (425)
T 1r5m_A 245 -GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG----------------------NSQN-CFYG--HSQSIVSASWV 298 (425)
T ss_dssp -CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB----------------------SCSE-EECC--CSSCEEEEEEE
T ss_pred -cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC----------------------ccce-EecC--CCccEEEEEEC
Confidence 16678999999999999999999999999976432 1111 1233 78899999999
Q ss_pred CCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce-------------
Q 002264 841 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE------------- 906 (945)
Q Consensus 841 ~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~------------- 906 (945)
|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| ++++|++|+.||.|++||+.+++
T Consensus 299 ~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 376 (425)
T 1r5m_A 299 GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376 (425)
T ss_dssp TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC------------
T ss_pred CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccc
Confidence 999 788877 89999999999999999999999999999999 89999999999999999999988
Q ss_pred -------EEEEecCCCc--ceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 907 -------VKSKLKGHQK--RITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 907 -------~~~~l~~h~~--~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.+..+.+|.. .|++++|+|++++|++++.||.|++||++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 377 LNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8999999977 99999999999999999999999999985
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=334.49 Aligned_cols=296 Identities=17% Similarity=0.272 Sum_probs=242.1
Q ss_pred eecCCCcEEEEEE-----eC-CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 340 SLHQGSTVISMDF-----HP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 340 ~~~h~~~V~~v~f-----sp-~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
..+|.+.|++++| +| +++ +|++|+.|++|+|||+.+++..... ......+.+|...|.+++
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHFVSDLA 83 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSCEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCceEEEE
Confidence 3459999999999 77 888 6999999999999999765432100 001234789999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec--
Q 002264 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-- 491 (945)
Q Consensus 414 ~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-- 491 (945)
|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||..+.......
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~ 158 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFSSAEK 158 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceeeeecc
Confidence 99999999999999999999999987665 6789999999999999999 8999999999999995566555554
Q ss_pred -CCCCCEEEEEeeecCC--------ccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 492 -GHEAPVYSICPHHKEN--------IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 492 -~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
+|...|.+++|+|... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~---- 233 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK---- 233 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET----
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC----
Confidence 7889999999987532 268999999999999994 45566677888999999999999999999985
Q ss_pred CceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE--Eeec---------CCCCC
Q 002264 563 DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDA---------EGGLP 630 (945)
Q Consensus 563 ~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~---------~~~~~ 630 (945)
|+.|++||+.. ......+.. .. .+.+++|+|++.+++ ++.|+.|++|++.+++... .+.. .++..
T Consensus 234 dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC
T ss_pred CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC
Confidence 99999999944 444444432 22 689999999988766 4567889999998876543 3331 13455
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 311 ~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7999999999999999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=331.05 Aligned_cols=291 Identities=15% Similarity=0.215 Sum_probs=229.2
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccc-c-CCCccEEEEEEcCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-K-DVPISVSRVAWSPD 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~i~~s~~ 417 (945)
..+|.+.|++++|+|+ +||+|+.|++|+|||+.++.... ...+ . +|...|.+++|+|+
T Consensus 10 ~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~-----------------~~~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTL-----------------IDVLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEE-----------------EEEECTTCCCSCEEEEEECTT
T ss_pred eccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEE-----------------EEEEecCCccCCEEEEEECCC
Confidence 3459999999999998 59999999999999998753211 0112 3 39999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCc----ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC-CC----ceEE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SG----RKLF 488 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~-~~----~~~~ 488 (945)
+++||+|+.|++|++|++..+. .......+.+|...|.+++|+|+++ +|++|+.|++|++||. .+ +++.
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 9999999999999999986432 1223346789999999999999999 8999999999999993 32 4567
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC--CeeEEecCCCCeEEEEEEcCC--CCEEEEEeecCCCCc
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSKDGDS 564 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~d~~~ 564 (945)
.+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +..|++++. |+
T Consensus 148 ~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----D~ 221 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD----DS 221 (330)
T ss_dssp EECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET----TS
T ss_pred EeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC----CC
Confidence 8899999999999987 5589999999999999998876 456678889999999999998 678888885 89
Q ss_pred eEEEEeCCCC--------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee--EEEeecCCCCC-Ccc
Q 002264 565 FLVEWNESEG--------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLP-NLP 633 (945)
Q Consensus 565 ~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-~v~ 633 (945)
.|++||+..+ .....+.+.+...+.+++|++++ .|++++.||.|++|+..+++. .... ...|.. .|.
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~~v~ 299 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVYEIN 299 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTSCEE
T ss_pred eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccccceEE
Confidence 9999998764 34455555233479999999764 899999999999999988753 2222 223343 799
Q ss_pred EEEEcC--CCCEEEEEECCCcEEEEECCC
Q 002264 634 RLRFSK--EGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 634 ~v~~sp--~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+++|+| ++++|++|+.||+|++|++++
T Consensus 300 ~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 300 VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999 789999999999999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=340.63 Aligned_cols=307 Identities=17% Similarity=0.256 Sum_probs=248.1
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
....++|.+.|+|++|||||+ +||+|+ +++++||++.+++.+.......-. ..............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence 345567999999999999999 488876 789999999988765321000000 00000000011123445699999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
+|++||+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++. +|++++.|++|++|| .+++....+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999886655 6789999999999999999 899999999999999 7787777765 567
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-------cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
.+.+++|+|. ++.+|++|+.||.|++||++++.....+ ..|...|.+++|+|++++|++++. |+.|++
T Consensus 208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 7999999874 5689999999999999999988776655 457779999999999999999986 999999
Q ss_pred EeCCCC------------ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 569 WNESEG------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 569 wd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
||+.+. .....+.+|.. .+.+++|++++.+|++|+.||.|++||..+++.+..+..|.. .|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEE
Confidence 998763 34556777776 789999999999999999999999999999999988887654 899999
Q ss_pred EcC------CCCEEEEEECCCcEEEEECCC
Q 002264 637 FSK------EGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 637 ~sp------~g~~l~~~~~dg~i~iw~~~~ 660 (945)
|++ ++++|++|+.||+|++|++..
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 886 688999999999999999854
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=353.71 Aligned_cols=368 Identities=14% Similarity=0.190 Sum_probs=274.7
Q ss_pred CCCcEEEEEEeCCCCeEEEEE----------eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVG----------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i 412 (945)
+...|.+++|+|+|+.+|++| +.|+.|+|||+.+++.... .....|...|.++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~~ 73 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFNDL 73 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEEE
Confidence 445899999999998679999 8899999999988753210 1123588999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCcc-cccceeeccccccEEEEEEecC-CCeeEEEEEeCCCcEEEEe-CCCc----
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR---- 485 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~~i~vwd-~~~~---- 485 (945)
+|+|++++|++|+.||.|++|++.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++|| .+++
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccc
Confidence 9999999999999999999999987211 1133367789999999999998 66 899999999999999 5554
Q ss_pred --eE---EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------CCeEEEEEEcCCC-CEE
Q 002264 486 --KL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADG-SRL 553 (945)
Q Consensus 486 --~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~-~~l 553 (945)
.. ..+..|...|.+++|++.. +.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred cccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 22 2346799999999998752 579999999999999999998888888776 6789999999998 567
Q ss_pred EEEeecCCCCc---eEEEEeCCCC-ceeeEec-cccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeeEEEeecCC
Q 002264 554 FSCGTSKDGDS---FLVEWNESEG-TIKRTYA-GFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 554 ~~~~~~~d~~~---~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
++++. ++ .|++||++++ .....+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..+.
T Consensus 231 ~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~ 305 (416)
T 2pm9_A 231 ATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG 305 (416)
T ss_dssp EEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred EEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence 77764 55 9999999986 5677777 6765 899999999 89999999999999999999999999888765
Q ss_pred CCCCccEEEEcCCC-CEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcccccc
Q 002264 628 GLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (945)
Q Consensus 628 ~~~~v~~v~~sp~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~ 706 (945)
. .|.+++|+|++ .+|++++.||.|++|++.+...... .... ..........+.+.+..++.........+ .
T Consensus 306 ~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 377 (416)
T 2pm9_A 306 N--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD-EQET---ETKQQESETDFWNNVSREESKEKPSVFHL--Q 377 (416)
T ss_dssp S--CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC-C-------------------------CCSCCCSSCC--C
T ss_pred C--ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc-cccc---cccccCCcccccccccccccccccccccc--c
Confidence 4 89999999999 8999999999999999987632221 1110 00111222333333333332222111111 0
Q ss_pred CCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccce
Q 002264 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (945)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (945)
.+. ...-......++++|+++++++.|+.|++|++..
T Consensus 378 ~~~--~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 378 APT--WYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCS--TTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred CCc--cccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 000 0001112456788888999999999999999863
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=331.10 Aligned_cols=300 Identities=22% Similarity=0.300 Sum_probs=255.3
Q ss_pred eEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
...++ +|.+.|++|+|+|++..+||||+.||+|+|||+.+++.... .....+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEEEC
Confidence 33445 49999999999998544799999999999999987654321 1124578999999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc-eEEEecCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGH 493 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~-~~~~~~~~ 493 (945)
|+|++|++|+.|+.|++|+...+.... ....+...+..+.+++++. +|++++.|+.+++|| .... ....+.+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999998876554 4557888999999999999 899999999999999 3333 34456789
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
...+..++|++.+...++++++.|+.|++||+++......+..+...|++++|+|++++|++++. |+.|++||+.+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~ 246 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNE 246 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTT
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEecc
Confidence 99999999998877788999999999999999999999999999999999999999999999985 89999999999
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec-------CCCCCCccEEEEcCCCCEEEE
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-------EGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~sp~g~~l~~ 646 (945)
++.+..+..+. .+..++|+|++. +++++.|+.|++||++++..+..+.. ..+...|++++|+|+|++|++
T Consensus 247 ~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 247 GKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp TEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred CceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 99998887654 688999999865 55667799999999999887776643 245568999999999999999
Q ss_pred EECCCcEEEEECCCCc
Q 002264 647 TTADNGFKILANAIGL 662 (945)
Q Consensus 647 ~~~dg~i~iw~~~~~~ 662 (945)
|+.||.|+|||+.+|.
T Consensus 324 gs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 324 GYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTSCEEEEEEEC--
T ss_pred EeCCCEEEEEeCCCcC
Confidence 9999999999998873
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=330.54 Aligned_cols=207 Identities=17% Similarity=0.279 Sum_probs=176.7
Q ss_pred ceeeccccc-cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE---EEecCCCCCEEEEEeeecCCccEEEEEEcCC
Q 002264 444 HSQIDAHVG-AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDG 518 (945)
Q Consensus 444 ~~~~~~h~~-~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 518 (945)
..++.+|.. .|++++|+|+|+ +|++|+.|++|++|| ..+... ....+|...|.+++|+| ++++|++++.|+
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~--~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~D~ 83 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGT--LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFDA 83 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSS--CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEETTS
T ss_pred eeeecCCCCCcEEEEEECCCCC--EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEECCC
Confidence 346778988 999999999999 899999999999999 555432 22368999999999987 568999999999
Q ss_pred eEEEEEccCCC--eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc---eeeEeccccCcceEEEEE
Q 002264 519 KIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQF 593 (945)
Q Consensus 519 ~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~ 593 (945)
++++||+.... ....+..|...|.+++|+|++++|++++. |+.|++||+.++. .+..+.+|.. .+.+++|
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~ 158 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR----DKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVW 158 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEE
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC----CCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEE
Confidence 99999998764 45577888899999999999999999986 8999999998763 4556777766 7999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+|++++|++++.|+.|++||..++.........+|...|.+++|+|+|++|++++.|++|++|+..
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 999999999999999999999888654433334455689999999999999999999999999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=352.81 Aligned_cols=332 Identities=13% Similarity=0.165 Sum_probs=263.1
Q ss_pred CccEEEEEEcCCCC-EEEEE----------ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 406 PISVSRVAWSPDGN-YVGVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 406 ~~~V~~i~~s~~g~-~las~----------~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
...|.+++|+|+|+ +|++| +.|+.|++||+.+++..+....+ .|...|.+++|+|++. +|++|+.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~d 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDN 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccC
Confidence 35788999999987 99999 88999999999987643332233 5899999999999999 89999999
Q ss_pred CcEEEEe-CC----CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC------eeEE---ecCCCCe
Q 002264 475 KLIKVWE-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG------SRVD---YDAPGHW 540 (945)
Q Consensus 475 ~~i~vwd-~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~---~~~~~~~ 540 (945)
+.|++|| .. .+.+..+.+|...|.+++|+|+ ++.+|++++.||.|++||+.+.. .... ...+...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999999 44 3588899999999999999875 25799999999999999998876 3332 2445667
Q ss_pred EEEEEEcCC-CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 541 CTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 541 i~~~~~s~~-~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
|.+++|+|+ +..+++++. ++.|++||+++++.+..+..+...
T Consensus 168 v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------- 210 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGS----SNFASIWDLKAKKEVIHLSYTSPN--------------------------------- 210 (416)
T ss_dssp CCEEEECSSCTTEEEEESS----SSCEEEEETTTTEEEEEECCCCCS---------------------------------
T ss_pred eeEEEeCCCCCcEEEEEcC----CCCEEEEECCCCCcceEEeccccc---------------------------------
Confidence 888888887 566666654 667777777766655554433220
Q ss_pred EEEeecCCCCCCccEEEEcCCC-CEEEEEECCC---cEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 620 LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~g-~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
.++...|.+++|+|++ .++++++.|+ .|++||+.++......
T Consensus 211 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------------------------- 256 (416)
T 2pm9_A 211 ------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---------------------------- 256 (416)
T ss_dssp ------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------
T ss_pred ------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------
Confidence 1223479999999987 6899999998 9999998754110000
Q ss_pred CCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC
Q 002264 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (945)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 775 (945)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccccc-CCCcCCceeEEeecC-CCceEEecC-CC
Q 002264 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA-GVNLEEAVPCIALSK-NDSYVMSAT-GG 852 (945)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~i~~l~~s~-dg~~la~~s-d~ 852 (945)
+. + |...|.+++|+| ++++|++++ |+
T Consensus 257 -------------------------------------------------~~~~--~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 257 -------------------------------------------------LNQG--HQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp -------------------------------------------------CCSC--CSSCEEEEEECSSCSSCEEEEESSS
T ss_pred -------------------------------------------------eecC--ccCceeEEEeCCCCCCeEEEEeCCC
Confidence 00 1 566788888888 888899888 88
Q ss_pred eEEEEeccCceEEEEecCCCCCeeEEEeecCCC-ceEEEeecCceEEEEecccceEEEEec-------------------
Q 002264 853 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN-NIIAIGTEDSTIHIYNVRVDEVKSKLK------------------- 912 (945)
Q Consensus 853 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~-~~lasg~~dg~v~vwd~~~~~~~~~l~------------------- 912 (945)
+|++||+.+++++.++.+|...|++++|+| ++ .+|++++.||.|++||+.++.......
T Consensus 286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSR 364 (416)
T ss_dssp EEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC--------------------
T ss_pred CEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccc
Confidence 999999999999999999999999999999 66 899999999999999998765322211
Q ss_pred ----------------CCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 913 ----------------GHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 913 ----------------~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.|..++.+++|+|||++|++++.|++|+||++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 365 EESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp --CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred cccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 16778889999999999999999999999997
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=336.67 Aligned_cols=279 Identities=14% Similarity=0.220 Sum_probs=203.5
Q ss_pred EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC
Q 002264 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~ 426 (945)
-..+.+.+++. ++.++.+.....|++.... ..+|...|++++|||||++||+|+.
T Consensus 8 ~sg~d~g~~~~--~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fSpDG~~las~s~ 62 (357)
T 4g56_B 8 SSGVDLGTENL--YFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYRRDGALLLAASS 62 (357)
T ss_dssp ---------------------------------------------------------CCCSEEEEEEECSSSCEEEEEEC
T ss_pred ccCCCCCccce--EEecCCCccccccCCCCCC-----------------------cccccCCEEEEEECCCCCEEEEEcC
Confidence 34555666664 3444446778889875432 3359999999999999999999998
Q ss_pred ------CCcEEEEEccCCcccccc-eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE----EEecCCC
Q 002264 427 ------KHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----FNFEGHE 494 (945)
Q Consensus 427 ------dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~----~~~~~~~ 494 (945)
|+.|++|+..++...... ....+|...|.+++|+|++. +++++.||+|++|| .+++.. ....+|.
T Consensus 63 d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 139 (357)
T 4g56_B 63 LSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHD 139 (357)
T ss_dssp SSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCS
T ss_pred CCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCC
Confidence 778999998877644322 23457899999999999985 56678899999999 666543 3445899
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC-EEEEEeecCCCCceEEEEeCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
..|++++|+| ++++|++++.|+.|++||+++++....+..|...|.+++|++++. .+++++. ++.|++||+++
T Consensus 140 ~~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~----dg~v~~wd~~~ 213 (357)
T 4g56_B 140 DIVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE----DGRILLWDTRK 213 (357)
T ss_dssp SCEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET----TSCEEECCTTS
T ss_pred CCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc----CCceEEEECCC
Confidence 9999999987 668999999999999999999999999999999999999999886 5677764 89999999999
Q ss_pred CceeeEeccc-cCcceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC-CEEEEEECC
Q 002264 574 GTIKRTYAGF-RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTAD 650 (945)
Q Consensus 574 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~l~~~~~d 650 (945)
++....+... ....+.+++|+|++ .+|++|+.|+.|++||+++++.+..+..+.. .|.+++|+|++ ++|++++.|
T Consensus 214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ--NITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS--CEEEEEECSSSSCCEEEEETT
T ss_pred CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce--eEEEEEEcCCCCCEEEEEeCC
Confidence 8877665432 23368899999974 6888999999999999999999988876654 89999999987 689999999
Q ss_pred CcEEEEECCCC
Q 002264 651 NGFKILANAIG 661 (945)
Q Consensus 651 g~i~iw~~~~~ 661 (945)
++|+|||+.++
T Consensus 292 ~~i~iwd~~~~ 302 (357)
T 4g56_B 292 CTVAVLDADFS 302 (357)
T ss_dssp SCEEEECTTSC
T ss_pred CEEEEEECCCC
Confidence 99999998765
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=323.91 Aligned_cols=248 Identities=19% Similarity=0.305 Sum_probs=219.4
Q ss_pred ccccCCCccEEEEEEcCCC-CEEEEEECCCcEEEEEccCCcc--cccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 400 SIFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g-~~las~~~dg~i~vwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
..+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|++. ++++|+.|++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~ 88 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKT 88 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCE
Confidence 4578999999999999965 8999999999999999875332 122346889999999999999999 8999999999
Q ss_pred EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC------
Q 002264 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD------ 549 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~------ 549 (945)
|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ +.....+..|...+.++.++|.
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence 99999 88999999999999999999977 56899999999999999986 4566777888889999999985
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
+..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 166 ~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--- 237 (319)
T 3frx_A 166 SVTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--- 237 (319)
T ss_dssp CCEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---
T ss_pred ccEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---
Confidence 447888885 99999999999999999999887 8999999999999999999999999999999998888754
Q ss_pred CCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..|.+++|+|++.++++++.+ .+++|++...
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 379999999999999988865 5999998754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=320.94 Aligned_cols=251 Identities=21% Similarity=0.324 Sum_probs=225.4
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|...|++++|+|++++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~v 91 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKI 91 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEE
Confidence 4578999999999999999999999999999999999887655 6778999999999999999 8999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+++++....+..+...|.+++|+|+++++++++.
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99 88999999999999999999987 5589999999999999999999988899899999999999999999999985
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++.|++||+++++.+..+.......+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 170 ----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp ----TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred ----CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 8999999999999888876666557899999999999999999999999999999999888776543223333444
Q ss_pred -CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 -KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 -p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++.++++|+.||.|++||+.++
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTC
T ss_pred eCCCcEEEEECCCCEEEEEECCCc
Confidence 68899999999999999999765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=337.91 Aligned_cols=308 Identities=14% Similarity=0.185 Sum_probs=251.5
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
.+..|+..+....+++.+|.. .|.+++|+|++++|++|+.||+|++||+.+++....+..|.. .|.+++|+|+|++|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQSV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSEE
T ss_pred cccccccceeEEeeccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCEE
Confidence 345577777888889999987 899999999999999999999999999999999988887654 89999999999999
Q ss_pred EEEECCCcEEEEECCCCcc------ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCC
Q 002264 645 AVTTADNGFKILANAIGLR------SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (945)
++|+.|+.+++|++.+... ....+.+ +.+.+.++.|.|++.
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g-----h~~~v~~~~~~~~~~---------------------------- 170 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTG-----HKGYASSCQYVPDQE---------------------------- 170 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCC-----CSSCCCCCBCCSSSS----------------------------
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccC-----CCcceEEEEEecCCC----------------------------
Confidence 9999999999999975421 1122222 233455566655432
Q ss_pred CCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEec-CCCeEEEeeecCeEEEEeecCCC
Q 002264 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN-SAVGLLALGSNGVQKLWKWHRNE 797 (945)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~~~dg~i~lw~~~~~~ 797 (945)
..+++++.|++|++||+..... ...+......+|...|.++++++ ++..+++++.||.|++||+....
T Consensus 171 --------~~l~s~s~D~~i~~wd~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 171 --------TRLITGSGDQTCVLWDVTTGQR---ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp --------SCEEEECTTSCEEEECTTTCCE---EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred --------CEEEEECCCCcEEEEEcCCCcE---EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 3457999999999999975321 12221222235889999999987 88999999999999999864211
Q ss_pred CCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCC---
Q 002264 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP--- 873 (945)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~--- 873 (945)
.. ...+.+ |...|++++|+|++++|++|+ |++|++||+.+++.+..+..+..
T Consensus 240 ---------------------~~-~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 240 ---------------------RA-VRTYHG--HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp ---------------------CC-CEEECC--CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred ---------------------cc-eEEECC--cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc
Confidence 11 112444 899999999999999999999 89999999999999888875432
Q ss_pred ----CeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe----cCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 874 ----ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL----KGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 874 ----~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l----~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.|++++|+| ++++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|+||+.|++|++|++
T Consensus 296 ~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 296 NELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 489999999 9999999999999999999999988877 689999999999999999999999999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=331.39 Aligned_cols=297 Identities=13% Similarity=0.151 Sum_probs=222.6
Q ss_pred EEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-------C----ceeeEeccccCcceE
Q 002264 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-------G----TIKRTYAGFRKKSNG 589 (945)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-------~----~~~~~~~~~~~~~~~ 589 (945)
+.|++..... ..+...|.+++|+|||++|++++ +..+++||... . ........+. ..|.
T Consensus 17 r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-----d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 86 (344)
T 4gqb_B 17 REWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-----SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTE-AGVA 86 (344)
T ss_dssp ------CCSC----SSCCSEEEEEEECTTSCEEEEEE-----CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEES-SCEE
T ss_pred cccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-----CCceEEeeceeeeeccccccCCcceeeeeeccC-CCEE
Confidence 5676654322 23456799999999999998876 45566666321 0 0111111122 2589
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee--cCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccc
Q 002264 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD--AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 667 (945)
+++|+|+ +.+++|+.||.|++||+.+++.+.... ..+|...|.+++|+|+|++|++|+.|++|++||+.++ +.+..
T Consensus 87 ~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-~~~~~ 164 (344)
T 4gqb_B 87 DLTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-VVLSS 164 (344)
T ss_dssp EEEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred EEEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEE
Confidence 9999998 478899999999999999987654432 3355668999999999999999999999999999876 22211
Q ss_pred ccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceee
Q 002264 668 VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIV 747 (945)
Q Consensus 668 ~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 747 (945)
+
T Consensus 165 ~------------------------------------------------------------------------------- 165 (344)
T 4gqb_B 165 Y------------------------------------------------------------------------------- 165 (344)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCCcceeeecCCCCCCccceEEEEEecCCC-eEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccccc
Q 002264 748 DSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 826 (945)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 826 (945)
. +|...|.+++|++++. .+++++.||+|++||+.... .... +.
T Consensus 166 ----------~---~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~----------------------~~~~-~~ 209 (344)
T 4gqb_B 166 ----------R---AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK----------------------PASQ-IG 209 (344)
T ss_dssp ----------C---CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS----------------------CEEE-CC
T ss_pred ----------c---CcCCceEEEEecCCCCCceeeeccccccccccccccc----------------------eeee-ee
Confidence 1 1778899999999885 57888899999999864321 1111 11
Q ss_pred CCCcCCceeEEeecCC-CceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 827 GVNLEEAVPCIALSKN-DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 827 ~~~~~~~i~~l~~s~d-g~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
...+...+.+++|+|+ ++++|+|+ |++|+|||+.+++++.++.+|...|++++|+|++.++||+|+.||+|+|||+.+
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 1115667899999995 56788888 899999999999999999999999999999994347899999999999999999
Q ss_pred ceEEEEecCCCcceeEEEecCCcce-eeeecCCceEEEEecC
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNI-LVSSGADAQVTLCVEH 945 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~-l~s~~~Dg~i~vWdl~ 945 (945)
++++ .+.+|.+.|++|+|+|+++. |+|+|.|++|++|+++
T Consensus 290 ~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 290 SELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp CEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 8765 57899999999999999875 6689999999999974
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=329.02 Aligned_cols=285 Identities=14% Similarity=0.149 Sum_probs=242.6
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
|.+.|.+++|+|||+. ++++..++.+.+|........ ....+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQ-------------------INTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEE-------------------EEEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCcccc-------------------ceeccCCCceEEEEEecCCcEEE
Confidence 5668999999999994 777776666666644332221 11347999999999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc--eEEEecCCCCCE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPV 497 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~--~~~~~~~~~~~v 497 (945)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++|| .+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999877655444444 7999999999999999 899999999999999 6655 567788899999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.+++|++ +++++++++.||.|++||+++++....+..+...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999987 5689999999999999999999888888888999999999999999999985 899999999999888
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..+.. . ..+.+++|+|+++.+++++.+|.|++||+.+++... +. .+...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~-~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-T-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-S-SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-C-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 77753 3 368999999999999999999999999999887653 33 3345899999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9766
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=325.08 Aligned_cols=319 Identities=12% Similarity=0.145 Sum_probs=265.1
Q ss_pred ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
|.++|.+++|+|||+ +++++..++.+..|+ ..........+|...|.+++|++ +++++++++ ||.|++||+.+.
T Consensus 8 ~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp EEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTST
T ss_pred cCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCCC
Confidence 667899999999999 787777777777777 44444445557999999999987 568999988 999999999876
Q ss_pred Cee---EEec--CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc--eeeEeccccCcceEEEEEcCCCCEEE
Q 002264 529 GSR---VDYD--APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 529 ~~~---~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 601 (945)
... ..+. .+...|.+++|+|+++++++++. ++.|++||+.+++ ....+..+.. .+.+++|+|++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCF 157 (337)
T ss_dssp TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEE
T ss_pred CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCCC-ceEEEEECCCCCEEE
Confidence 533 2222 67789999999999999999885 8999999999887 5566666665 789999999999999
Q ss_pred EEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcce
Q 002264 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIE 681 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~ 681 (945)
+++.||.|++||+++++.+..+..+. ..|.+++|+|+++++++++.||.|++||+.++.. ..
T Consensus 158 ~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~--------------- 219 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQ--------------- 219 (337)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EE---------------
T ss_pred EEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCce-Ee---------------
Confidence 99999999999999999988887654 4899999999999999999999999999875410 00
Q ss_pred eeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCC
Q 002264 682 SVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST 761 (945)
Q Consensus 682 ~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 761 (945)
.
T Consensus 220 ------------------------------------------------------------------------~------- 220 (337)
T 1gxr_A 220 ------------------------------------------------------------------------Q------- 220 (337)
T ss_dssp ------------------------------------------------------------------------E-------
T ss_pred ------------------------------------------------------------------------e-------
Confidence 0
Q ss_pred CCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC
Q 002264 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (945)
Q Consensus 762 ~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~ 841 (945)
.. +...+.+++|+|
T Consensus 221 -----------------------------~~-------------------------------------~~~~v~~~~~s~ 234 (337)
T 1gxr_A 221 -----------------------------HD-------------------------------------FTSQIFSLGYCP 234 (337)
T ss_dssp -----------------------------EE-------------------------------------CSSCEEEEEECT
T ss_pred -----------------------------ec-------------------------------------CCCceEEEEECC
Confidence 00 234466777888
Q ss_pred CCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeE
Q 002264 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (945)
Q Consensus 842 dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 920 (945)
+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~ 311 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLS 311 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEE
Confidence 888888777 77788888877665 45677999999999999 8999999999999999999999887554 48899999
Q ss_pred EEecCCcceeeeecCCceEEEEec
Q 002264 921 LAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 921 l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++|+|++++|++++.||.|++||+
T Consensus 312 ~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 312 CDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=339.66 Aligned_cols=342 Identities=10% Similarity=0.090 Sum_probs=275.2
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
..+++++|+|+|++|++|+.||.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| ..++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345578999999999999999999999999876654 34445 4455667899999 899999999999999 7778
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
....+.+|...|.+++|+| ++.+|++++.|+.|++||+.+++....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 8888889999999999987 5689999999999999999999999999999999999999999999999985 899
Q ss_pred EEEEeCCCCceeeEecccc--CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCE
Q 002264 566 LVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 643 (945)
|++||+++++.+..+..+. ...+.++++.+.+... .... +...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~--~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHEI--STSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGGG--CCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eeec--ccCcccceEEcCCCCE
Confidence 9999999999998887643 2256667766543211 1111 2347899999999999
Q ss_pred EEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCcc
Q 002264 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSR 723 (945)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (945)
|++++.||.|++||+.++..... +
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~-~------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQ-L------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEE-E-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEE-c-------------------------------------------------------
Confidence 99999999999999875511000 0
Q ss_pred CCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCc
Q 002264 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (945)
Q Consensus 724 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (945)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc-eEEecC-CCeEEEEeccCceE-EEEecC-CCCCeeEEE
Q 002264 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKV-MTTFMS-PPPASTFLA 879 (945)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~-~la~~s-d~~i~iwd~~~~~~-~~~~~~-h~~~i~~l~ 879 (945)
..+ |...|.+++|+|+++ +|++|+ ||.|++||+.+++. +..+.+ |...|+++.
T Consensus 286 ---------------------~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 342 (420)
T 3vl1_A 286 ---------------------PSK--FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342 (420)
T ss_dssp ---------------------CCT--TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE
T ss_pred ---------------------ccc--cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE
Confidence 000 556677788888887 777777 77888888877643 566665 666788885
Q ss_pred eecCCCceEEEeecCceEEEEecccc---------eEEEEecCCCcceeEEEecCCcc---eeeeecCCceEEEEec
Q 002264 880 FHPQDNNIIAIGTEDSTIHIYNVRVD---------EVKSKLKGHQKRITGLAFSTSLN---ILVSSGADAQVTLCVE 944 (945)
Q Consensus 880 ~s~~~~~~lasg~~dg~v~vwd~~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~l~s~~~Dg~i~vWdl 944 (945)
+ + ++++|++++.||.|++|++... .....+.+|.+.|.+++|+|++. .+++++.+|.+.+|++
T Consensus 343 ~-~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 343 F-A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp E-E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred e-C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 5 4 5789999999999999998863 22334667899999999999999 7888889999999997
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=338.38 Aligned_cols=282 Identities=15% Similarity=0.150 Sum_probs=238.4
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEEE
Confidence 4558999999996 8999999999999998876542 24445 4556668899999999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (945)
.||.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|+.|++|| .+++.+..+.+|...|.+++|+|
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876554 5678999999999999999 899999999999999 88889999999999999999987
Q ss_pred cCCccEEEEEEcCCeEEEEEccCCCeeEEecCC---CCeEEE---------------------EEEcCCCCEEEEEeecC
Q 002264 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTT---------------------MLYSADGSRLFSCGTSK 560 (945)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~---------------------~~~s~~~~~l~~~~~~~ 560 (945)
++.+|++++.||.|++||+++++....+..+ ...+.+ ++|+|+++++++++.
T Consensus 192 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 --RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp --TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred --CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 5689999999999999999998888777642 234444 445789999999885
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCCee-EEEeecCCCCCCccEEEEc
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s 638 (945)
++.|++||+++++....+...+...+.+++|+|++. +|++++.||.|++||+++++. +..+..+. ...|.++.+
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~- 343 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF- 343 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE-
T ss_pred --CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe-
Confidence 899999999999988887665555899999999998 999999999999999998754 66666533 337778855
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++++|++++.||.|++|++...
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999999764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=343.63 Aligned_cols=382 Identities=11% Similarity=0.115 Sum_probs=277.5
Q ss_pred EEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEEEEEECCCc
Q 002264 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHL 429 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~las~~~dg~ 429 (945)
.|+|+++. +++++ .|+. +++.+. .+..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~~-~~~~~------~w~~-~g~~~~------------------~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNL-RGKLIA------------------TLMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGC-CCCEEE------------------EECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCcccc-ccccc------cccc-cceEEe------------------eeccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 36888884 66554 3763 344332 22378999999999999 9999999999999
Q ss_pred EEEEEccC---CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC----CCceEEEecCCCCCEEEEEe
Q 002264 430 IQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL----SGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 430 i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~----~~~~~~~~~~~~~~v~~~~~ 502 (945)
|++||+.+ +...+....+ +|...|.+++|+|+++ +|++|+.|++|++||. .++.+..+.+| .+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~ 162 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL 162 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence 99999987 5433333233 5999999999999999 8999999999999993 56666666555 5666666
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE--EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML--YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
++.+ +...+.++. +++++.++++++. ++.|++||+++++.+..+
T Consensus 163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQII 208 (437)
T ss_dssp GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEE
T ss_pred cCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEE
Confidence 5421 122233444 6789999999985 899999999999999999
Q ss_pred cc--ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc----CCCCEEEEEECCCcEE
Q 002264 581 AG--FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS----KEGNLLAVTTADNGFK 654 (945)
Q Consensus 581 ~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----p~g~~l~~~~~dg~i~ 654 (945)
.+ |.. .+.+++|+|++++|++|+.||.|++||+++++++..+.... ...|.+++|+ |++.+|++++.||.|+
T Consensus 209 ~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 209 ENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp ECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 88 554 89999999999999999999999999999999988876332 2379999665 4688999999999999
Q ss_pred EEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCC
Q 002264 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (945)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (945)
+||+.++ +....+.++.. .+..+.|+|+++.+
T Consensus 287 iwd~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~l------------------------------------------ 318 (437)
T 3gre_A 287 IWNFVKG-HCQYAFINSDE-----QPSMEHFLPIEKGL------------------------------------------ 318 (437)
T ss_dssp EEETTTT-EEEEEEESSSS-----CCCGGGGSCBCSSG------------------------------------------
T ss_pred EEEcCCC-cEEEEEEcCCC-----CCccceeccccccc------------------------------------------
Confidence 9999887 44444433322 22333333333221
Q ss_pred CCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeecccccc
Q 002264 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (945)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (945)
.+..
T Consensus 319 -------------------------------------------------~~~~--------------------------- 322 (437)
T 3gre_A 319 -------------------------------------------------EELN--------------------------- 322 (437)
T ss_dssp -------------------------------------------------GGCC---------------------------
T ss_pred -------------------------------------------------ccce---------------------------
Confidence 0000
Q ss_pred CCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCC---CeeEEEeecCCCceEEE
Q 002264 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAI 890 (945)
Q Consensus 815 ~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~---~i~~l~~s~~~~~~las 890 (945)
+.+..|...|++++|+ ++++|++|+ |+.|++||+.+++....+.+|.. .+....+++ +..+++.
T Consensus 323 ----------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 390 (437)
T 3gre_A 323 ----------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLR 390 (437)
T ss_dssp ----------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEE
T ss_pred ----------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEE
Confidence 0011177889999999 788899998 89999999999998888887654 356666776 5555544
Q ss_pred eecCceEEEEecccceEEEEecCCCcceeEEEecCC--cceeeeecCCceEEEEe
Q 002264 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS--LNILVSSGADAQVTLCV 943 (945)
Q Consensus 891 g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d--g~~l~s~~~Dg~i~vWd 943 (945)
. |+...+........|.+.|++++|+++ +.+|+||+.||.|+||+
T Consensus 391 ~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 K--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp E--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred e--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3 344444555666779999999999988 88999999999999995
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=354.91 Aligned_cols=294 Identities=20% Similarity=0.297 Sum_probs=250.9
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
..+|.+.|+|++|+|++..+|+||+.|++|+||++.+...... .....+.+|...|.+++|+|+|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCC
Confidence 3459999999999998765899999999999999976543211 01134789999999999999999
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe----cCCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEA 495 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~~~~ 495 (945)
+|++|+.||+|++||+.++...+ .+.+|...|.+++|+|++. +|++|+.|++|++||..+.....+ .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987665 6789999999999999999 899999999999999555544443 46888
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|.+++|+|......+++++.|++|++||++.......+..|...|.+++|+|++++|++++. |+.|++||+.+++
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGK 594 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCc
Confidence 999999998655578999999999999999999988899999999999999999999999985 9999999999999
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC-----------------CCCccEEEEc
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-----------------LPNLPRLRFS 638 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~s 638 (945)
.+..+..+ ..+.+++|+|++.++++++ ++.|++||++++..+..+..+.. ...+.+++|+
T Consensus 595 ~~~~~~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 671 (694)
T 3dm0_A 595 KLYSLEAN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671 (694)
T ss_dssp EEECCBCS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred eEEEecCC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence 88777654 3689999999988777665 56699999999998877653211 1136789999
Q ss_pred CCCCEEEEEECCCcEEEEECC
Q 002264 639 KEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~ 659 (945)
|+|++|++|+.||.|++|++.
T Consensus 672 pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 672 ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCEEEEEcCCCeEEEEecc
Confidence 999999999999999999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=327.97 Aligned_cols=289 Identities=14% Similarity=0.220 Sum_probs=238.3
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC-----------------cceEEEEEcCCCC
Q 002264 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----------------KSNGVVQFDTTQN 598 (945)
Q Consensus 536 ~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 598 (945)
.|...|.+++|+|||++|++++ ++.+++|++.+++.+..+..+.. ..+.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-----~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-----NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-----BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-----CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 4777899999999999999875 67899999999998887765432 1388999999999
Q ss_pred EEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccC
Q 002264 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (945)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (945)
+|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++++|++++.|++|++||+.++.. ...+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~---------- 203 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQ--DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTL---------- 203 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEE----------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCC--CEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEE----------
Confidence 999999999999999999999888876654 899999999999999999999999999976621 1000
Q ss_pred cceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecC
Q 002264 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (945)
Q Consensus 679 ~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (945)
.
T Consensus 204 -----------------------------------------------------------------------------~-- 204 (393)
T 1erj_A 204 -----------------------------------------------------------------------------S-- 204 (393)
T ss_dssp -----------------------------------------------------------------------------E--
T ss_pred -----------------------------------------------------------------------------E--
Confidence 0
Q ss_pred CCCCCccceEEEEEec-CCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEE
Q 002264 759 ESTDTSSKVVRLLYTN-SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (945)
Q Consensus 759 ~~~~~~~~v~~l~~s~-dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l 837 (945)
+...+.+++++| +++++++++.||.|++||+.... ..... +.. .....+ |...|+++
T Consensus 205 ----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~------~~~~~-----~~~-----~~~~~~--h~~~v~~v 262 (393)
T 1erj_A 205 ----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF------LVERL-----DSE-----NESGTG--HKDSVYSV 262 (393)
T ss_dssp ----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC------EEEEE-----C-----------CC--CSSCEEEE
T ss_pred ----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc------EEEee-----ccc-----ccCCCC--CCCCEEEE
Confidence 334578899998 89999999999999999864321 11100 000 000123 88999999
Q ss_pred eecCCCceEEecC-CCeEEEEeccC------------ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 838 ALSKNDSYVMSAT-GGKISLFNMMT------------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 838 ~~s~dg~~la~~s-d~~i~iwd~~~------------~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
+|+|+|++|++|+ |++|++||+.+ +.+..++.+|...|.+++|+| ++.+|++|+.||.|++||+.+
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTT
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCC
Confidence 9999999999999 89999999875 345667889999999999999 899999999999999999999
Q ss_pred ceEEEEecCCCcceeEEEecC------CcceeeeecCCceEEEEec
Q 002264 905 DEVKSKLKGHQKRITGLAFST------SLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~------dg~~l~s~~~Dg~i~vWdl 944 (945)
++.+..+.+|.+.|.+++|++ ++.+|+||+.||+|+||++
T Consensus 342 ~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 999999999999999999986 6889999999999999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=327.07 Aligned_cols=290 Identities=13% Similarity=0.184 Sum_probs=242.6
Q ss_pred eecCCCcEEEEEEeCCC-CeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-C
Q 002264 340 SLHQGSTVISMDFHPSH-QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-D 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g-~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~ 417 (945)
..+|.+.|++++|+|+| + +|++|+.||.|+|||+.+++.... ....+|...|.+++|+| +
T Consensus 69 ~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGPGDAITGMKFNQFN 130 (383)
T ss_dssp ECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCSTTCBEEEEEEETTE
T ss_pred ccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCccccee-----------------eecCCcCCceeEEEeCCCC
Confidence 34599999999999999 6 699999999999999988765421 11347999999999999 7
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v 497 (945)
+++|++|+.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|...|
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHKAKV 207 (383)
T ss_dssp EEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSSSCE
T ss_pred CCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCCCcE
Confidence 89999999999999999986 44443333345568899999999999 8999999999999998888999999999999
Q ss_pred EEEEeeecCCcc-EEEEEEcCCeEEEEEccC----CCeeEEecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeC
Q 002264 498 YSICPHHKENIQ-FIFSTAIDGKIKAWLYDT----MGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 498 ~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
.+++|+|. +. ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++.|++||+
T Consensus 208 ~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~ 280 (383)
T 3ei3_B 208 THAEFNPR--CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSS 280 (383)
T ss_dssp EEEEECSS--CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEET
T ss_pred EEEEECCC--CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEEC
Confidence 99999874 45 899999999999999987 4444444 5788999999999 9999999985 899999999
Q ss_pred CCCceeeEeccccC----------------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 572 SEGTIKRTYAGFRK----------------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 572 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
++++....+.++.. ..+..++++|++.+ +++.||.|++||+.+++.+..+..+.+...+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~ 358 (383)
T 3ei3_B 281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLN 358 (383)
T ss_dssp TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEE
T ss_pred CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEE
Confidence 99888777765431 12333555666655 6678999999999999999999876655678888
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCC
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+|+|++++|++++ ||.|++|++++
T Consensus 359 ~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 359 KFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCccEEEEec-CCcEEEEecCC
Confidence 9999999999997 89999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-35 Score=315.61 Aligned_cols=247 Identities=20% Similarity=0.313 Sum_probs=208.6
Q ss_pred ccccCCCccEEEEEE-----cC-CCCEEEEEECCCcEEEEEccCCccc----ccceeeccccccEEEEEEecCCCeeEEE
Q 002264 400 SIFKDVPISVSRVAW-----SP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVV 469 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~-----s~-~g~~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~ 469 (945)
..+.+|.+.|++++| ++ ++++|++|+.|++|++||+.+++.. .....+.+|...|.+++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 458899999999999 77 9999999999999999999765421 22346789999999999999999 899
Q ss_pred EEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec---CCCCeEEEEE
Q 002264 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTML 545 (945)
Q Consensus 470 s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~ 545 (945)
+|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+.. ....... .+...|.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeee
Confidence 999999999999 88999999999999999999987 568999999999999999873 3333332 5667899999
Q ss_pred EcCCC----------CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 546 YSADG----------SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 546 ~s~~~----------~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
|+|++ .++++++. ++.|++|| ...+....+.+|.. .+.+++|+|++++|++|+.||.|++||+.
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 99987 68888885 99999999 45667777888876 79999999999999999999999999994
Q ss_pred -CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 616 -NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 616 -~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.......+.. . ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 244 ~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 244 NLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 4444444432 2 269999999999988765 5778999999765
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=312.97 Aligned_cols=299 Identities=13% Similarity=0.160 Sum_probs=223.9
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEe-cC-CCCeEEEEEEcCCCCEEEEEeec
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDY-DA-PGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~-~~-~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
.+++..+.+|...|.+++|++ + +|++|+.|++|++||+..+. ....+ .. |...|.+++|+|++++|++++.
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~- 78 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF- 78 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEET--T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-
T ss_pred cccceeeccCCCceeeeccCC--C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-
Confidence 456788899999999999875 3 89999999999999998753 23334 33 7789999999999999999986
Q ss_pred CCCCceEEEEeCCC-------CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-C---eeEEEeecCCC
Q 002264 560 KDGDSFLVEWNESE-------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-V---NILTSTDAEGG 628 (945)
Q Consensus 560 ~d~~~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~ 628 (945)
|+.|++||+.. .+.+..+.+|.. .+.+++|+|++++|++|+.|+.|++||++. + +++..+..|
T Consensus 79 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h-- 152 (330)
T 2hes_X 79 ---DSTVSIWAKEESADRTFEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH-- 152 (330)
T ss_dssp ---TSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC--
T ss_pred ---CCcEEEEEcccCcCccccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC--
Confidence 89999999853 356677888876 899999999999999999999999999943 2 455566554
Q ss_pred CCCccEEEEcCCCCEEEEEECCCcEEEEECCCCc-cccccccCCccccccCcceeeeecccccceeccCCCCCccccccC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (945)
...|.+++|+|++.+|++++.|++|++|+..++. ..+
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~------------------------------------------ 190 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV------------------------------------------ 190 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE------------------------------------------
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE------------------------------------------
Confidence 4489999999999999999999999999975431 000
Q ss_pred CCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC--CCeEEEeeec
Q 002264 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS--AVGLLALGSN 785 (945)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~~~~~d 785 (945)
..+. +|...|.+++|+|+ +..|++++.|
T Consensus 191 -----------------------------------------------~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 191 -----------------------------------------------AVLN---GHEGTVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp -----------------------------------------------EEEC---CCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred -----------------------------------------------EEcc---CCCCcEEEEEecCCCCeeEEEEEeCC
Confidence 0111 16666777777776 5567777777
Q ss_pred CeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEE
Q 002264 786 GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVM 865 (945)
Q Consensus 786 g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~ 865 (945)
++|++|++.... . .+. . ...+.
T Consensus 221 ~~v~iw~~~~~~--------------------------------~-----------~~~----------~-----~~~~~ 242 (330)
T 2hes_X 221 STVRVWKYMGDD--------------------------------E-----------DDQ----------Q-----EWVCE 242 (330)
T ss_dssp SCEEEEEEEEEC--------------------------------T-----------TSC----------E-----EEEEE
T ss_pred CeEEEEEecCCC--------------------------------c-----------ccc----------c-----eeEEe
Confidence 777777642100 0 000 0 01234
Q ss_pred EEecC-CCCCeeEEEeecCCCceEEEeecCceEEEEecccce--EEE-EecCCCc-ceeEEEecC--CcceeeeecCCce
Q 002264 866 TTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKS-KLKGHQK-RITGLAFST--SLNILVSSGADAQ 938 (945)
Q Consensus 866 ~~~~~-h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~--~~~-~l~~h~~-~V~~l~~s~--dg~~l~s~~~Dg~ 938 (945)
..+.+ |...|.+++|++ ++ +|++|+.||.|+|||..+++ .+. .+.+|.. .|.+++|+| ++++|+|++.||+
T Consensus 243 ~~~~~~h~~~v~~v~~s~-~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWGF-NG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EECCSCCSSCEEEEEECT-TS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred eecccccccceEEEEEcC-CC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 45554 889999999997 65 89999999999999998874 333 3467887 899999999 7899999999999
Q ss_pred EEEEecC
Q 002264 939 VTLCVEH 945 (945)
Q Consensus 939 i~vWdl~ 945 (945)
|+|||+.
T Consensus 321 v~~W~~~ 327 (330)
T 2hes_X 321 VNFWSLE 327 (330)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9999973
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=342.74 Aligned_cols=349 Identities=9% Similarity=0.036 Sum_probs=245.0
Q ss_pred CCccEEEEEEcCCC---------CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 405 VPISVSRVAWSPDG---------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 405 h~~~V~~i~~s~~g---------~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ .|++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999876420 01368888 899999999
Q ss_pred cEEEEe-CCCce----EEEecCCCCCEEEEEeeec----CCccEEEEEEcCCeEEEEEccCCCe-----------eEEec
Q 002264 476 LIKVWE-LSGRK----LFNFEGHEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGS-----------RVDYD 535 (945)
Q Consensus 476 ~i~vwd-~~~~~----~~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 535 (945)
+|+||| ..++. ...+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..+.. ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 55553 2446678889999999986 3467999999999999999976542 23566
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeEeccccCcceEEE--EEcCCC-CEEEEEECCCcEEE
Q 002264 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVV--QFDTTQ-NHFLAVGEDSQIKF 611 (945)
Q Consensus 536 ~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~l~~~~~dg~i~i 611 (945)
.|...|++++|++++ .|++++. |+.|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999864 7888875 9999999999774 4556778876 78888 578887 89999999999999
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccc
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
||++++++...+..+.....|.+++|+|+++.+++++.|++|++||++++. ....
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~------------------------ 392 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHP------------------------ 392 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEE------------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-ccee------------------------
Confidence 999988776666554332358899999999999999999999999987651 1100
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEE
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 771 (945)
+. +|...|.+++
T Consensus 393 -----------------------------------------------------------------l~---gH~~~V~sva 404 (524)
T 2j04_B 393 -----------------------------------------------------------------LV---SRETTITAIG 404 (524)
T ss_dssp -----------------------------------------------------------------EE---ECSSCEEEEE
T ss_pred -----------------------------------------------------------------ee---cCCCceEEEE
Confidence 01 1778899999
Q ss_pred EecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCC
Q 002264 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (945)
Q Consensus 772 ~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd 851 (945)
|+|+|+.|++++.||+|++|++.... +....+ .....+...+++++|+|+++.+...
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~---------------~~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~~-- 461 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRL---------------LHGIKN------SSATQKSLRLWKWDYSIKDDKYRID-- 461 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSST---------------TTCC------------CCCCEEEECBCCSSSCEEEEC--
T ss_pred eCCCCCeEEEEECCCEEEEEechHhh---------------cccccc------CccceeeeEEEEeccCCCCCeEEcc--
Confidence 99999999999999999999753211 000000 0000022357899999999866332
Q ss_pred CeEEEEecc-CceEEEEecCCCCCeeEEEeecCCC---ceEEEeecCceEEEEeccc
Q 002264 852 GKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDN---NIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 852 ~~i~iwd~~-~~~~~~~~~~h~~~i~~l~~s~~~~---~~lasg~~dg~v~vwd~~~ 904 (945)
+.+.+|+.. ++.++.++.+|...|.+|+|+| ++ .+||+|+.||.|+||++..
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 233344433 4677888999999999999999 64 5999999999999999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=326.54 Aligned_cols=342 Identities=19% Similarity=0.305 Sum_probs=264.6
Q ss_pred cccCCCccE-EEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 401 IFKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 401 ~~~~h~~~V-~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.+.+|...| .++.+ ++++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++|++++ .+++|+.||+|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 467888775 66666 57899999999999999999987665 678999999999999877 6899999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+++.+..+.+|...|.+++|++.+++.++++++.||.|++||+.+............. ..+.+.++
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~--------- 257 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPE--------- 257 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS-SEEESCGG---------
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc-ceEeeccC---------
Confidence 99 88999999999999999999998778899999999999999999876544332211110 00111111
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
........+.+|.. .+.++ +++++++++++.||.|++||+.+++.+..+..+. ..|.+++|+
T Consensus 258 -------------~~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~ 319 (464)
T 3v7d_B 258 -------------ENPYFVGVLRGHMA-SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYD 319 (464)
T ss_dssp -------------GCTTEEEEECCCSS-CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEE
T ss_pred -------------CCeEEEEEccCccc-eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCEEEEEEc
Confidence 11223344555554 45444 6778999999999999999999999998887654 489999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (945)
|+++++++|+.||.|++||+.++. .+..
T Consensus 320 ~~~~~l~sg~~dg~i~vwd~~~~~-~~~~--------------------------------------------------- 347 (464)
T 3v7d_B 320 HERKRCISASMDTTIRIWDLENGE-LMYT--------------------------------------------------- 347 (464)
T ss_dssp TTTTEEEEEETTSCEEEEETTTTE-EEEE---------------------------------------------------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCc-EEEE---------------------------------------------------
Confidence 999999999999999999987651 1100
Q ss_pred CCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCC
Q 002264 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (945)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~ 798 (945)
T Consensus 348 -------------------------------------------------------------------------------- 347 (464)
T 3v7d_B 348 -------------------------------------------------------------------------------- 347 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeE
Q 002264 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF 877 (945)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~ 877 (945)
+.+ |...|.+++|+ ++++++++ ||+|++||+.+++...... |...+..
T Consensus 348 --------------------------~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~ 396 (464)
T 3v7d_B 348 --------------------------LQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAI 396 (464)
T ss_dssp --------------------------ECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCE
T ss_pred --------------------------EeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccE
Confidence 001 45556666665 45677776 7778888887776655554 6677889
Q ss_pred EEeecCCCceEEEeecCceEEEEecccceEEEE-ecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 878 l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
++|++ ++++|++|+ ||.|++||+.+++.+.. +.+|.+.|++++|+ +...+++++.||.+.+|-+
T Consensus 397 ~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 397 TTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99999 899999998 99999999999999986 67899999999997 4456666677887766654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=321.45 Aligned_cols=277 Identities=18% Similarity=0.283 Sum_probs=242.3
Q ss_pred EeecCCCcE-EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 339 VSLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 339 ~~~~h~~~V-~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
...+|.+.| +|+ +++|+ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+
T Consensus 113 ~l~~h~~~v~~~~--~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 113 VLKGHDDHVITCL--QFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp EEECSTTSCEEEE--EEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--
T ss_pred EecccCCCcEEEE--EEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--
Confidence 345687765 554 45677 59999999999999999887663 377899999999997
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
+++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 241 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence 6799999999999999999987665 677999999999996 45 799999999999999 889999999999999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
|.++++ ++.++++++.||.|++||++++.....+..+...|.++.| ++.++++++. ++.|++||+.+++.
T Consensus 242 v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 242 VRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNC 311 (445)
T ss_dssp EEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCE
T ss_pred EEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCE
Confidence 999987 4578999999999999999999988899989999999999 7889999885 89999999999999
Q ss_pred eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC-CCCCccEEEEcCCCCEEEEEECCCcEEE
Q 002264 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (945)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~l~~~~~dg~i~i 655 (945)
+..+.+|.. .+.++.+ +++.+++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++
T Consensus 312 ~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~i 386 (445)
T 2ovr_B 312 IHTLTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL 386 (445)
T ss_dssp EEEECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred EEEEcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEE
Confidence 999988876 6666666 46799999999999999999999998887632 45589999995 679999999999999
Q ss_pred EECCCC
Q 002264 656 LANAIG 661 (945)
Q Consensus 656 w~~~~~ 661 (945)
||+.++
T Consensus 387 wd~~~~ 392 (445)
T 2ovr_B 387 WDLKTG 392 (445)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 999877
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=339.36 Aligned_cols=358 Identities=10% Similarity=0.060 Sum_probs=254.2
Q ss_pred cceEEeecCCCcEEEEEEeCCC---------CeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 335 RTVAVSLHQGSTVISMDFHPSH---------QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g---------~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
.....++.+.+.|++|+|+|++ + +||+|+.++. . .
T Consensus 124 ~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~--------~--~------------------------- 167 (524)
T 2j04_B 124 KRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYM--------D--E------------------------- 167 (524)
T ss_dssp CSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC---------------------------------------
T ss_pred CcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEeccc--------C--C-------------------------
Confidence 4556677788999999999997 5 6888875532 0 0
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccc-ceeeccccccEEEEEEecC------CCeeEEEEEeCCCcEE
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYP------NKLLCVVTCGDDKLIK 478 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~~------~~~~~l~s~s~d~~i~ 478 (945)
..+|+++.+++++.|++|+||++.+++.... ...+.+|.+.|.+++|+|+ +. +|++++.||+|+
T Consensus 168 -------~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 168 -------PLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred -------ccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 1268999999999999999999988764321 1245678899999999997 45 899999999999
Q ss_pred EEe-CCCc-----------eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC-eeEEecCCCCeEEEE-
Q 002264 479 VWE-LSGR-----------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTM- 544 (945)
Q Consensus 479 vwd-~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~- 544 (945)
+|| ..+. +...+.+|...|++++|++ + ..|++|+.||+|++||++++. ....+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999 4443 1246788999999999975 3 479999999999999998764 345678899999999
Q ss_pred -EEcCCC-CEEEEEeecCCCCceEEEEeCCCCceeeEeccccC-cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE
Q 002264 545 -LYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 545 -~~s~~~-~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (945)
.|++++ .+|++++. |++|++||+++++....+.+|.. ..+.+++|+|++..+++++.|+.|++||++++.++.
T Consensus 316 ~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 578888 88899986 99999999999888777777654 246789999999999999999999999999998877
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCc
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC 701 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~ 701 (945)
.+..|. ..|++++|+|+|++|++|+.||+|++|++..+ .+..............+..++|+|+|..+.
T Consensus 392 ~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-------- 459 (524)
T 2j04_B 392 PLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-------- 459 (524)
T ss_dssp EEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE--------
T ss_pred eeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE--------
Confidence 777654 48999999999999999999999999998643 222211110011112366788888886431
Q ss_pred cccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCC---e
Q 002264 702 KVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV---G 778 (945)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~---~ 778 (945)
.. +..++|.... .+. ....+.+ |...|.+++|+|++. .
T Consensus 460 ------------------------------~~--~~~~~~~~~~---~g~-~~~~l~g---h~~~V~~Vafsp~~~~~~~ 500 (524)
T 2j04_B 460 ------------------------------ID--SSYEVYPLTV---NDV-SKAKIDA---HGINITCTKWNETSAGGKC 500 (524)
T ss_dssp ------------------------------EC--CCCCCCC--------------------CCCSCCCEEECCSTTTTTE
T ss_pred ------------------------------cc--CCceeccccc---CCc-ceeeecC---CCceEEEEECCCCCCccHH
Confidence 11 1222332210 011 1123333 889999999999964 8
Q ss_pred EEEeeecCeEEEEeecC
Q 002264 779 LLALGSNGVQKLWKWHR 795 (945)
Q Consensus 779 l~~~~~dg~i~lw~~~~ 795 (945)
+++++.+|.|+||++..
T Consensus 501 lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 501 YAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEECTTSEEEEEECSC
T ss_pred HHhhccCceEEEEEccc
Confidence 99999999999998643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=315.71 Aligned_cols=290 Identities=12% Similarity=0.117 Sum_probs=255.1
Q ss_pred ceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
......+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEEc
Confidence 3455567999999999999999 59999999999999999887653 377899999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CCCc----
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGR---- 485 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~~~---- 485 (945)
|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|++. ++++++.+ +.|++|| ..+.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987665 344 888999999999999 88999988 9999999 4332
Q ss_pred -------eEEEecCCCC--CEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 486 -------KLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 486 -------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+++ ......+..+...|.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3445556666 899999987 568999999999999999998 6677788888899999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC--------------cEEEEECCCCeeEE
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--------------QIKFWDMDNVNILT 621 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~ 621 (945)
++. ++.|++||+.+++.+..+.. . ..+..++|+|++.++++++.++ .+++||..+++.+.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D-CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S-SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C-CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 985 89999999999999888873 2 3688999999999999999888 89999999999999
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+..+.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 310 ~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 310 RVQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred heecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 8877654 8999999999999999999999999999865
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=324.41 Aligned_cols=292 Identities=13% Similarity=0.165 Sum_probs=250.0
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC---
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--- 417 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~--- 417 (945)
.+|.+.|++++|+| + +|++|+.||+|+|||+.+++.... ++ ....+.+|...|.+++|+|+
T Consensus 13 ~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~--~~-----------~~~~~~~h~~~v~~~~~~~~~~~ 76 (397)
T 1sq9_A 13 KAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENP--KD-----------KSYSHFVHKSGLHHVDVLQAIER 76 (397)
T ss_dssp SCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCG--GG-----------GEEEEECCTTCEEEEEEEEEEET
T ss_pred hhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccC--CC-----------cceEEecCCCcEEEEEEeccccc
Confidence 35999999999999 4 699999999999999988762210 00 11336689999999999999
Q ss_pred -C---CEEEEEECCCcEEEEEccCCcc-----cccceeeccc-----cccEEEEEEe----cCCCeeE-EEEEeCCCcEE
Q 002264 418 -G---NYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAH-----VGAVNDLAFA----YPNKLLC-VVTCGDDKLIK 478 (945)
Q Consensus 418 -g---~~las~~~dg~i~vwd~~~~~~-----~~~~~~~~~h-----~~~v~~l~~s----~~~~~~~-l~s~s~d~~i~ 478 (945)
| ++|++++.||.|++|++.+++. +. .+..| ...|.+++|+ |++. + |++++.|+.|+
T Consensus 77 ~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 77 DAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTY 151 (397)
T ss_dssp TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEE
T ss_pred CCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEE
Confidence 9 9999999999999999998875 44 56677 5999999999 9999 8 99999999999
Q ss_pred EEe-CC------CceEE-----Ee-------cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC---
Q 002264 479 VWE-LS------GRKLF-----NF-------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--- 536 (945)
Q Consensus 479 vwd-~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--- 536 (945)
+|| .. ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++......+..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 999 65 55555 66 45889999999977 56 999999999999999999888888888
Q ss_pred C---CCeEEEEEEcCCCCEEEEEeecCCCC---ceEEEEeCCCCceeeEecc-------------ccCcceEEEEEcCCC
Q 002264 537 P---GHWCTTMLYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAG-------------FRKKSNGVVQFDTTQ 597 (945)
Q Consensus 537 ~---~~~i~~~~~s~~~~~l~~~~~~~d~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 597 (945)
| ...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|++
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 303 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSG 303 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSS
T ss_pred ccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCC
Confidence 7 889999999999999999986 7 8999999999999999988 665 89999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEee------cC-------------CCCCCccEEEEcCCC----------CEEEEEE
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTD------AE-------------GGLPNLPRLRFSKEG----------NLLAVTT 648 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~sp~g----------~~l~~~~ 648 (945)
++|++++.||.|++||+.+++.+..+. .+ .|...|.+++|+|+| ++|++++
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 999999999999999999999999988 44 014589999999998 7999999
Q ss_pred CCCcEEEEECCCC
Q 002264 649 ADNGFKILANAIG 661 (945)
Q Consensus 649 ~dg~i~iw~~~~~ 661 (945)
.||.|++|++.++
T Consensus 384 ~dg~i~iw~~~~g 396 (397)
T 1sq9_A 384 LDRSIRWFREAGG 396 (397)
T ss_dssp TTTEEEEEEEEC-
T ss_pred CCCcEEEEEcCCC
Confidence 9999999999765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=321.77 Aligned_cols=314 Identities=18% Similarity=0.301 Sum_probs=268.0
Q ss_pred eeccccccE-EEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEE
Q 002264 446 QIDAHVGAV-NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (945)
Q Consensus 446 ~~~~h~~~v-~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (945)
.+.+|.+.| .+ ++++++ ++++|+.||+|++|| .+++.+..+.+|...|.+++|+ +.++++|+.||+|++|
T Consensus 113 ~l~~h~~~v~~~--~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEEE--EEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEE
T ss_pred EecccCCCcEEE--EEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEE
Confidence 577898875 54 445677 899999999999999 8899999999999999999985 3589999999999999
Q ss_pred EccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE
Q 002264 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (945)
|+.+++....+..|...|.++.++ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.++++ +++.++++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEE
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEE
Confidence 999999999999999999999995 567888885 89999999999999999988876 7888888 68899999
Q ss_pred ECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
+.||.|++||+++++.+..+..+. ..|.+++| ++.++++++.||.|++||+.++. ....+
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~--------------- 315 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTL--------------- 315 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEE---------------
T ss_pred cCCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEE---------------
Confidence 999999999999999998887654 48999999 78999999999999999987651 11000
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCC
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (945)
T Consensus 316 -------------------------------------------------------------------------------- 315 (445)
T 2ovr_B 316 -------------------------------------------------------------------------------- 315 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCC
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg 843 (945)
.+ |...+.++++ ++
T Consensus 316 --------------------------------------------------------------~~--~~~~v~~~~~--~~ 329 (445)
T 2ovr_B 316 --------------------------------------------------------------TG--HQSLTSGMEL--KD 329 (445)
T ss_dssp --------------------------------------------------------------CC--CCSCEEEEEE--ET
T ss_pred --------------------------------------------------------------cC--CcccEEEEEE--eC
Confidence 00 3333444444 45
Q ss_pred ceEEecC-CCeEEEEeccCceEEEEecC---CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe-----cCC
Q 002264 844 SYVMSAT-GGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-----KGH 914 (945)
Q Consensus 844 ~~la~~s-d~~i~iwd~~~~~~~~~~~~---h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l-----~~h 914 (945)
+++++|+ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 330 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 406 (445)
T 2ovr_B 330 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 406 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCC
Confidence 6777777 88899999988888888886 888899999964 69999999999999999999999888 578
Q ss_pred CcceeEEEecCCcceeeeecCCce----EEEEecC
Q 002264 915 QKRITGLAFSTSLNILVSSGADAQ----VTLCVEH 945 (945)
Q Consensus 915 ~~~V~~l~~s~dg~~l~s~~~Dg~----i~vWdl~ 945 (945)
.+.|++++|+|++.+|++++.||+ |.|||+.
T Consensus 407 ~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 407 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 899999999999999999999998 9999984
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=320.20 Aligned_cols=282 Identities=16% Similarity=0.250 Sum_probs=244.3
Q ss_pred eEEeecCCCc-EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 337 VAVSLHQGST-VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 337 ~~~~~~h~~~-V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
.....+|.+. ++|+.|+ ++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+
T Consensus 114 ~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~ 171 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYA 171 (464)
T ss_dssp EEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEEC
T ss_pred eEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEc
Confidence 3444568777 4676664 55 59999999999999999887653 367899999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec--CCCeeEEEEEeCCCcEEEEe-CCCc-------
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGR------- 485 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~~~l~s~s~d~~i~vwd-~~~~------- 485 (945)
|++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .++.
T Consensus 172 ~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 172 HGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp STT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC-----
T ss_pred CCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccc
Confidence 988 99999999999999999987665 6788999999999995 556 899999999999999 5443
Q ss_pred ----------------eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 486 ----------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 486 ----------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
.+..+.+|...+.++. + ++.++++++.||.|++||+.+++....+..+...|.+++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEEc--C--CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 2567788999998884 3 4579999999999999999999999999999999999999999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
++++++++. ++.|++||+.+++.+..+.+|.. .+.+++++ ++++++++.||.|++||+.++........ .
T Consensus 322 ~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~ 391 (464)
T 3v7d_B 322 RKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH---T 391 (464)
T ss_dssp TTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC---T
T ss_pred CCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC---C
Confidence 999999985 89999999999999999999877 78889987 57999999999999999999887666542 2
Q ss_pred CCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+..++|+|+++++++++ ||.|++||+.++
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3678899999999999998 899999999887
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=305.54 Aligned_cols=287 Identities=17% Similarity=0.265 Sum_probs=249.9
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
.....+ +|.+.|++++| |+++ +|++|+.||.|++||+.+++.. ..+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~-------------------~~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLG-------------------TVVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEE-------------------EEEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEE-------------------EEeecCCccEEEEEE
Confidence 344444 49999999999 8998 4999999999999999877654 236678999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 494 (945)
+|++++|++|+.||.|++|++...........+.+|...|.+++| ++. ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876555555578899999999999 466 899999999999999 777888899999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
..+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+++
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999874 457999999999999998 4455556665 778999999999998 777764 89999999999
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i 653 (945)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999998876 89999999998 689999999999999999999999887654 899999999998 5678999999
Q ss_pred EEEECCCC
Q 002264 654 KILANAIG 661 (945)
Q Consensus 654 ~iw~~~~~ 661 (945)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=307.54 Aligned_cols=210 Identities=19% Similarity=0.250 Sum_probs=180.7
Q ss_pred ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-----ceEEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 442 RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-----RKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 442 ~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
....+|.+|.+.|++++|+|++.. +|+|||.|++|++|| .++ .+...+.+|...|.+++|+| ++.+|++++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--dg~~l~s~~ 105 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALSGS 105 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT--TSSEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC--CCCEEEEEc
Confidence 334478999999999999998433 899999999999999 443 24678899999999999977 668999999
Q ss_pred cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE-eccccCcceEEEEEc
Q 002264 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFD 594 (945)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~ 594 (945)
.|+.|++|+............+...+..+.+++++..+++++. ++.+++||......... ..+|.. .+..++|+
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~~~~ 180 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDESHSE-WVSCVRFS 180 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSSCSS-CEEEEEEC
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEeccccC-cccceEEc
Confidence 9999999999998888888888888999999999999999985 89999999987655443 344444 78889998
Q ss_pred CCC--CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 595 TTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 595 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++ ..+++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.||.|++||+.+.
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 764 578889999999999999999998887664 48999999999999999999999999998755
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=331.97 Aligned_cols=294 Identities=17% Similarity=0.237 Sum_probs=237.1
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~ 419 (945)
..|...|+|++|+|.+..+||+|+.||+|+|||+.+++.... ..+.+|.+.|++|+|+| ++.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCC
Confidence 458889999999996555799999999999999987764321 22568999999999998 789
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~ 499 (945)
+|++|+.||+|++||++++. .........+...+.+++|+|++. +|++|+.||.|++||.+++.+..+.+|...|.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEE
T ss_pred EEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEe
Confidence 99999999999999998753 222222234555788999999999 899999999999999778888899999999999
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE---ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~ 576 (945)
++|+|.. ..++++++.|+.|++||+++...... ...|...|++++|+|+|++|++++. |+.|++||+.++..
T Consensus 256 v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 256 VALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDC 330 (435)
T ss_dssp EEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSS
T ss_pred eeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCcc
Confidence 9998864 35889999999999999987665433 3457789999999999999999986 89999999999988
Q ss_pred eeEeccccCc-----ceEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCeeEEEeecCCCCCCccEE-EEc
Q 002264 577 KRTYAGFRKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL-RFS 638 (945)
Q Consensus 577 ~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s 638 (945)
...+..|... ......|+|++..+++++ .++.|++||..+++.+..+..+ +...|.++ +|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fs 409 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFN 409 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEEC
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEEC
Confidence 7777655431 122356777777776664 3457999999999998877543 33477877 699
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|+|++|++|+ |+.|+||+++++
T Consensus 410 pdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 410 PMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCEEEEEc-CCcEEEEECCcC
Confidence 9999999876 789999999877
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=317.36 Aligned_cols=296 Identities=13% Similarity=0.209 Sum_probs=242.9
Q ss_pred cceEEeec-CCCcEEEEEEeCCCCeEEEEEeC---cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE
Q 002264 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (945)
Q Consensus 335 ~~~~~~~~-h~~~V~~v~fsp~g~~llasgs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (945)
......+. |...|++++|+|+|.+++++|+. ||.|+|||+.+++.... ...+|...|.
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~ 69 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIK 69 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEE
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEE
Confidence 33444444 99999999999999878888887 99999999998765421 1236889999
Q ss_pred EEEEcCC---CCEEEEEECCCcEEEEEccCCc-ccccceeeccccccEEEEEE------ecCCCeeEEEEEeCCCcEEEE
Q 002264 411 RVAWSPD---GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 411 ~i~~s~~---g~~las~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~~------s~~~~~~~l~s~s~d~~i~vw 480 (945)
+++|+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++|
T Consensus 70 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 70 CGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVW 144 (357)
T ss_dssp EEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEE
T ss_pred EEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEE
Confidence 9999998 7999999999999999999886 444 67799999999965 67888 89999999999999
Q ss_pred e-CCCc-eEEEecCCCC----CEEEEEeee--cCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC---C
Q 002264 481 E-LSGR-KLFNFEGHEA----PVYSICPHH--KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA---D 549 (945)
Q Consensus 481 d-~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---~ 549 (945)
| .+++ .+..+..|.. .+.+++|.+ .+++.++++++.||.|++||+++...... ..+...|.+++|+| +
T Consensus 145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSS
T ss_pred eCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCC
Confidence 9 6665 6777766554 788888422 23678999999999999999998776443 55677899999999 9
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEec-----cccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCC------
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-----GFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV------ 617 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~------ 617 (945)
+.++++++. ++.|++||+++++....+. +|.. .+.+++|+|++. ++++++.||.|++||++++
T Consensus 224 ~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 224 MNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp CCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred CCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence 999999885 8999999999877665554 6665 899999999998 8999999999999999764
Q ss_pred -------------eeEEEeecCCCCCCccEEEEcCCCCEEE-EEECCCcEEEEECCCC
Q 002264 618 -------------NILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIG 661 (945)
Q Consensus 618 -------------~~~~~~~~~~~~~~v~~v~~sp~g~~l~-~~~~dg~i~iw~~~~~ 661 (945)
+.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 344555544 45899999999999998 8999999999999765
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=317.55 Aligned_cols=292 Identities=15% Similarity=0.107 Sum_probs=246.1
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC--cccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
|.++|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+ ..+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~-------------------~~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-------------------HELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-------------------EEEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEee-------------------eeecCCCCcccEEEEeCCCCE
Confidence 888999999999999 59999999999999998875 33 236789999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc----eEEEecCCCC
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR----KLFNFEGHEA 495 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~----~~~~~~~~~~ 495 (945)
|++++.||.|++||+.+++.... ..+..|...|.+++|+|+++ +|++++.|+.|++|| ..+. ......+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeeee-EEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 99999999999999988764332 23567999999999999999 899999999999999 5554 2333467899
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEcc------------------CCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYD------------------TMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.|.+++|+| ++.+|++++.||.|++||++ .+.....+..+...+.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999987 56899999999999999954 5566777778888999999999999999998
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC--CeeE---------------
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNIL--------------- 620 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 620 (945)
. ++.|++||+++++.+..+..+.. .+.+++|+|++.+++++ .||.|++|++.+ +...
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 5 89999999999999999998866 78999999999877776 999999999987 4310
Q ss_pred -----------------------EEeecCCCCCCccEEEEc-CCC---CEEEEEECCCcEEEEECCCCccccc
Q 002264 621 -----------------------TSTDAEGGLPNLPRLRFS-KEG---NLLAVTTADNGFKILANAIGLRSLR 666 (945)
Q Consensus 621 -----------------------~~~~~~~~~~~v~~v~~s-p~g---~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (945)
..+. .+|...|++++|+ ++| .+|++++.||.|++|++.++.+.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 2455689999976 677 9999999999999999987654443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=321.88 Aligned_cols=290 Identities=15% Similarity=0.236 Sum_probs=242.3
Q ss_pred cCCCcEEEEEEeCC---CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-
Q 002264 342 HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (945)
Q Consensus 342 ~h~~~V~~v~fsp~---g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~- 417 (945)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999984 443566666688999999987765431 1 11112347789999999999
Q ss_pred ---CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCCceEEEe--
Q 002264 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (945)
Q Consensus 418 ---g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-- 490 (945)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.||.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987665 6778999999999999 788 899999999999999 788888888
Q ss_pred -cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec----------------------------CCCCeE
Q 002264 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------------------------APGHWC 541 (945)
Q Consensus 491 -~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~i 541 (945)
.+|...|.+++|+| ++.+|++++.||.|++||+++......+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999987 56899999999999999998765433222 377889
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce--------------eeEeccccCcceEEEEEcCC--CCEEEEEEC
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--------------KRTYAGFRKKSNGVVQFDTT--QNHFLAVGE 605 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 605 (945)
.+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 778888875 89999999987644 667777766 6888999999 999999999
Q ss_pred CCcEEEEECCCCe----eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 606 DSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 606 dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999875 34466666546689999999999999999999999999985
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=317.26 Aligned_cols=315 Identities=11% Similarity=0.071 Sum_probs=246.5
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
-...|.+++|||||+ ++||++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 346899999999999 699999999999 6444332 46899999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCC-----CE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-----PV 497 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-----~v 497 (945)
.++.+.+|+.+....+ .+ .|...|.+++|||+|+ .|++++.||.|++||..+ ++..+. |.. .+
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 5665555554322211 22 4688999999999999 899999999999999444 667777 665 49
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-------eEEe----cCCCCeEEEEEEcCCCCEEEEEeecCCCCceE
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RVDY----DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i 566 (945)
.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. |+.+
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 9999987 679999999999999999988752 3444 5566799999999999 666664 8999
Q ss_pred EEEeCCCCce---eeEec-cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE--cCC
Q 002264 567 VEWNESEGTI---KRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--SKE 640 (945)
Q Consensus 567 ~iwd~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--sp~ 640 (945)
++||+.++.. .+++. +|. ..|..++|+ ++.+++++ ++.|++||+.+++......+ |...|..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCC
Confidence 9999988774 34564 554 479999999 68888887 69999999998887443333 4558999999 999
Q ss_pred CCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCC
Q 002264 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (945)
Q Consensus 641 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (945)
+..+++++.||+ ++|... .++++||+..++
T Consensus 279 ~~~La~a~edG~-klw~~d----------------------~~~~spd~~l~a--------------------------- 308 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED----------------------ELHVTADNIIAP--------------------------- 308 (588)
T ss_dssp CEEEEECSSCEE-EEEESS----------------------SEEEECCCSSHH---------------------------
T ss_pred CCEEEEEcCCCC-EEEeec----------------------cEEECCCceEEE---------------------------
Confidence 999999999999 999875 145778876653
Q ss_pred CccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee
Q 002264 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
+ .|+++++|+..... ...+ . +...|.+++|||||+.+++++.
T Consensus 309 ----------~--~d~~v~lW~~~g~~----l~~~---~---~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 309 ----------Y--LEKKFKKWSTIWNE----FNNY---E---TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----------H--HHHHHHHTTTTTTS----SSSS---C---CEEEEEEEEECTTSSEEEEEEE
T ss_pred ----------E--cCCEEEEEECCCCc----eeee---c---cceEEEEEEECCCCCEEEEEEe
Confidence 2 26889999875321 1111 1 4567999999999998888765
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=306.02 Aligned_cols=301 Identities=16% Similarity=0.228 Sum_probs=253.2
Q ss_pred eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEE
Q 002264 531 RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 610 (945)
...+..|...|++++|+|++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSK----DSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEES----SSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeC----CCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeEE
Confidence 3457788999999999999999999985 88999999999999999998877 899999999999999999999999
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECCCCccccccccCCccccccCcceeeee
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 685 (945)
+||+.+++.+..+.. ...|.+++|+|+++++++++.+ |.|++|++....... .+.. .
T Consensus 100 iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~-~~~~--------------~ 161 (369)
T 3zwl_B 100 LWDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH-ELTK--------------V 161 (369)
T ss_dssp EEETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC-CEEE--------------E
T ss_pred EEECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce-eecc--------------c
Confidence 999999999888873 3479999999999999999999 999999997652111 0000 0
Q ss_pred cccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCcc
Q 002264 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (945)
Q Consensus 686 s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (945)
. ......+. . .....
T Consensus 162 --~------------------------------------------------------------~~~~~~~~--~-~~~~~ 176 (369)
T 3zwl_B 162 --S------------------------------------------------------------EEPIHKII--T-HEGLD 176 (369)
T ss_dssp --C------------------------------------------------------------SSCSEEEE--C-CTTCC
T ss_pred --c------------------------------------------------------------cceeeecc--C-CcCcc
Confidence 0 00000010 0 00233
Q ss_pred ceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 766 ~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
.+.+++|+|+++.+++++.||.|++||+... +.. ...+.. |...|.+++|+|++++
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------------~~~-~~~~~~--~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNN---------------------YEY-VDSIDL--HEKSISDMQFSPDLTY 232 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTT---------------------TEE-EEEEEC--CSSCEEEEEECTTSSE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCC---------------------cEe-EEEEec--CCCceeEEEECCCCCE
Confidence 8999999999999999999999999986421 111 111333 7889999999999999
Q ss_pred EEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCc--------------eEEEEecccceEEEE
Q 002264 846 VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--------------TIHIYNVRVDEVKSK 910 (945)
Q Consensus 846 la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg--------------~v~vwd~~~~~~~~~ 910 (945)
|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++ .+++||+.+++.+..
T Consensus 233 l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred EEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 99998 8999999999999998888 778899999999 899999999988 899999999999999
Q ss_pred ecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 911 LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 911 l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+.+|...|++++|+|++++|++++.||.|++|++.
T Consensus 311 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred eecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 99999999999999999999999999999999974
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=346.84 Aligned_cols=495 Identities=12% Similarity=0.077 Sum_probs=349.4
Q ss_pred eeecCCCCc-cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCc------CcEEEEEcCCCCcccccccccccc
Q 002264 318 VTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN------GEITLWELAMRDRLVSKPFKIWDM 390 (945)
Q Consensus 318 v~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~d------g~i~iwd~~~~~~~~~~~~~~~~~ 390 (945)
++|...+.- +|++.. +.......|...|.+++|||||++ ||.++.+ ..|.+|++.+++..
T Consensus 27 iaf~~~~~l~~~~~~g--g~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~---------- 93 (1045)
T 1k32_A 27 IIFVCCDDLWEHDLKS--GSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK---------- 93 (1045)
T ss_dssp EEEEETTEEEEEETTT--CCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE----------
T ss_pred EEEEECCcEEEEECCC--CcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE----------
Confidence 444443221 455443 455667779999999999999996 6655433 48999999877532
Q ss_pred cccCcccccccccCCCccE-------EEEEEcCCCCEEEEEECC------CcEEEEEccCCcccccceeeccccccEEEE
Q 002264 391 AACSLPFQASIFKDVPISV-------SRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDL 457 (945)
Q Consensus 391 ~~~~~~~~~~~~~~h~~~V-------~~i~~s~~g~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l 457 (945)
.+..|...+ .+++|||||+++++++.+ ..|.+|++.+++... +..+ ....+
T Consensus 94 ----------~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~ 157 (1045)
T 1k32_A 94 ----------RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHI 157 (1045)
T ss_dssp ----------ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEE
T ss_pred ----------EcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--Cccee
Confidence 266788888 999999999977777654 358888887765332 2223 23467
Q ss_pred EEecCCCeeEEEEEeC------------CCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 458 AFAYPNKLLCVVTCGD------------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 458 ~~s~~~~~~~l~s~s~------------d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
+|+| | ++++++. +...++|. ..+.....+.+|...+.++.|++ + .++++++.|+.+.+|.
T Consensus 158 ~~sp-G---~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~ 230 (1045)
T 1k32_A 158 LFAD-G---RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYS 230 (1045)
T ss_dssp EEET-T---EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEE
T ss_pred eeCC-C---EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEE
Confidence 7999 6 4666642 34567776 33355666789999999999975 4 6777888899999998
Q ss_pred ccC-CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc----------CcceEEEEE
Q 002264 525 YDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQF 593 (945)
Q Consensus 525 ~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~ 593 (945)
++. +.....+..+. .+...+|+|||+.++++. ++.|++||+...... .+.++. ...+..++|
T Consensus 231 ~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~ 303 (1045)
T 1k32_A 231 TDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDF 303 (1045)
T ss_dssp EETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEE
T ss_pred EeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceEee-eeccCcccccccccccccccceeee
Confidence 765 33334444443 356679999999998875 789999999544433 444421 124778999
Q ss_pred c-CCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC-CccEEEEcCCCCEEEEEECCCcEE-EEECCCCccccccccC
Q 002264 594 D-TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP-NLPRLRFSKEGNLLAVTTADNGFK-ILANAIGLRSLRAVEN 670 (945)
Q Consensus 594 ~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~ 670 (945)
+ |+|+.+++++ ++.|++|+..++.... +. .+.. .+..++|+ ||+.+++++.++.+. +|++.++.. ..+.+
T Consensus 304 S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~l~~ 376 (1045)
T 1k32_A 304 SPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EKFEE 376 (1045)
T ss_dssp EECGGGCEEEEE-TTEEEEECTTSSBEEE-CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EECCC
T ss_pred cCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eEecC
Confidence 9 9999999888 7899999998887554 32 2233 67899999 999999999988888 999877632 22222
Q ss_pred CccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCC
Q 002264 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (945)
Q Consensus 671 ~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 750 (945)
+ ...+..++|+|||+.++ +++.++.+++|++.. +
T Consensus 377 ~-----~~~~~~~~~SpDG~~la-------------------------------------~~~~~~~v~~~d~~t----g 410 (1045)
T 1k32_A 377 N-----LGNVFAMGVDRNGKFAV-------------------------------------VANDRFEIMTVDLET----G 410 (1045)
T ss_dssp C-----CCSEEEEEECTTSSEEE-------------------------------------EEETTSEEEEEETTT----C
T ss_pred C-----ccceeeeEECCCCCEEE-------------------------------------EECCCCeEEEEECCC----C
Confidence 2 23477899999988874 455567899999864 2
Q ss_pred cceeeecCCCCCCccceEEEEEecCCCeEEEeeecC----------eEEEEeecCCCCCCCCceeeeeccccccCCCccc
Q 002264 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG----------VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (945)
Q Consensus 751 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg----------~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (945)
....+ ... |...+.+++|+|||++|++++.++ .|++||+. +++.
T Consensus 411 ~~~~~-~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----------------------~g~~ 464 (1045)
T 1k32_A 411 KPTVI-ERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME----------------------GRKI 464 (1045)
T ss_dssp CEEEE-EEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT----------------------TTEE
T ss_pred ceEEe-ccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC----------------------CCcE
Confidence 22222 112 677889999999999999887754 78888643 3321
Q ss_pred ccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCce------------------------------------
Q 002264 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK------------------------------------ 863 (945)
Q Consensus 821 ~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~------------------------------------ 863 (945)
. .+.. |...+.+++|+|||++|++++ ++...+|+.....
T Consensus 465 ~--~l~~--~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1045)
T 1k32_A 465 F--AATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 540 (1045)
T ss_dssp E--ECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred E--EeeC--CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccc
Confidence 1 1333 667788899999999999887 4555555432111
Q ss_pred -------EEEEecCCCCCeeEEEeecCCCceEEE-------------eecCceEEEEecccceEEEEecCCCcceeEEEe
Q 002264 864 -------VMTTFMSPPPASTFLAFHPQDNNIIAI-------------GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (945)
Q Consensus 864 -------~~~~~~~h~~~i~~l~~s~~~~~~las-------------g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 923 (945)
.+..+..|.+.+..++++| ++.++++ ......|++||+.+++.. .+. ..+.+++|
T Consensus 541 d~~g~~~~~~~l~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---~~v~~~~~ 615 (1045)
T 1k32_A 541 DLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK---NNLTDLRL 615 (1045)
T ss_dssp CCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE---EEEEEEEE
T ss_pred cccCHhHceEEcCCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee---cCcceEEE
Confidence 1233445667789999999 8887775 123557899999888743 333 66889999
Q ss_pred cCCcceeeeecCCceEEEEec
Q 002264 924 STSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 924 s~dg~~l~s~~~Dg~i~vWdl 944 (945)
||||++|++++.| .|++||+
T Consensus 616 S~DG~~l~~~~~~-~i~~~d~ 635 (1045)
T 1k32_A 616 SADRKTVMVRKDD-GKIYTFP 635 (1045)
T ss_dssp CTTSCEEEEEETT-SCEEEEE
T ss_pred CCCCCEEEEEcCC-cEEEEeC
Confidence 9999999998877 7999997
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=309.41 Aligned_cols=293 Identities=14% Similarity=0.221 Sum_probs=244.4
Q ss_pred EEeecCCCc--EEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 338 AVSLHQGST--VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 338 ~~~~~h~~~--V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
....+|... +.+++|++ .. +++++.||.|++||+.+++.... ....|...|.+++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s 143 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWS 143 (401)
T ss_dssp EECTTCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEEC
T ss_pred eeCCCCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEEC
Confidence 333345555 44566654 44 56677899999999998876531 122388999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C-CCceEEEecCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGH 493 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~-~~~~~~~~~~~ 493 (945)
|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++|| . .+..+..+.+|
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 999999999999999999999987666 677899999999994 45 899999999999999 4 56778899999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~ 573 (945)
...|.+++|++ ++.+|++++.||.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+
T Consensus 217 ~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 217 SSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAAT 293 (401)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTT
T ss_pred CCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCC
Confidence 99999999987 5689999999999999999999888888889999999999998876665431 11389999999999
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
++.+..+..+ ..+.+++|+|+++.+++++ .||.|++||+.++..........+...|.+++|+|+|++|++++.||
T Consensus 294 ~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 294 GARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp CCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred CCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 9998888643 3699999999999999954 89999999999987776655555566899999999999999999999
Q ss_pred cEEEEECCCCcc
Q 002264 652 GFKILANAIGLR 663 (945)
Q Consensus 652 ~i~iw~~~~~~~ 663 (945)
.|++|++.++..
T Consensus 372 ~i~iw~~~~~~~ 383 (401)
T 4aez_A 372 NLKFWRVYDGDH 383 (401)
T ss_dssp EEEEEECCC---
T ss_pred cEEEEECCCCcc
Confidence 999999988743
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=307.57 Aligned_cols=282 Identities=15% Similarity=0.254 Sum_probs=241.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
..++|+||+++ +||+|. |++|+|||..+|+.... ..+.+|...|++|+|+|+|++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~-----------------~~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE-----------------EEecCCCCcEEEEEECCCCCEEEEEE
Confidence 57889999864 688886 99999999999986531 12557889999999999999999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
.||.|++||+.+++.++ .+.+|...+.+++|+ +. ++++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987766 678999999998886 45 899999999999999 4456778899999999999987
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCe----eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 579 (945)
+ ++.++++++.|+.+++|+...++. ......+...|.+++|+|++..+++.+. +..|+.|++||+.+++....
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~-gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE-CTTTCEEEEEETTTTEEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe-ecCCCEEEEEeCCcccccee
Confidence 7 568999999999999999987653 3456677889999999997765543321 12488999999999999988
Q ss_pred eccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
+..+. .+..+.|+++++.+++++ .||.|++||+.+++++..+.+|. ..|.+++|+|||++|++|+.|++|+|||
T Consensus 317 ~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 317 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred ecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 87764 578899999999998876 78999999999999999998764 4899999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
+.+.
T Consensus 393 v~~~ 396 (420)
T 4gga_A 393 CFEL 396 (420)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 9754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=308.06 Aligned_cols=299 Identities=12% Similarity=0.136 Sum_probs=240.7
Q ss_pred eeccccccEEEEEEecCC-CeeEEEEEeCCCcEEEEe-CCCceEEEec--CCCCCEEEEEeeecCCccEEEEEEcCCeEE
Q 002264 446 QIDAHVGAVNDLAFAYPN-KLLCVVTCGDDKLIKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~-~~~~l~s~s~d~~i~vwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (945)
.+.+|...|++++|+|++ + +|++|+.|+.|++|| .+++....+. +|...|.+++|+|. ++.+|++++.|+.|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPT--TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRGATT 144 (383)
T ss_dssp EECCCSSCEEEEEECSSCTT--EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTTEEE
T ss_pred eccCCCCCEEEEEECCCCCC--EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCCEEE
Confidence 577899999999999999 7 899999999999999 7677666665 69999999999874 357999999999999
Q ss_pred EEEccCCCeeEEecCC---CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC
Q 002264 522 AWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (945)
Q Consensus 522 iwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (945)
+||++. .....+..+ ...|.+++|+|+++++++++. ++.|++||+ +++.+..+.+|.. .+.+++|+|+++
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~ 217 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS----TGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCD 217 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET----TSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCT
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC----CCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCC
Confidence 999986 444444433 367999999999999999985 899999999 5778888888876 899999999998
Q ss_pred -EEEEEECCCcEEEEECCC----CeeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEECCCCccccccccCCc
Q 002264 599 -HFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPP 672 (945)
Q Consensus 599 -~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 672 (945)
.+++++.|+.|++||+++ +..+..+. +...|.+++|+| ++++|++++.|+.|++||+.++. ....+.++.
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~ 293 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS-KPDQIIIHP 293 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT-SCSEEEECC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc-ccccccccc
Confidence 999999999999999998 66666663 344899999999 99999999999999999998762 222221111
Q ss_pred cccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcc
Q 002264 673 FEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC 752 (945)
Q Consensus 673 ~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 752 (945)
...
T Consensus 294 ~~~----------------------------------------------------------------------------- 296 (383)
T 3ei3_B 294 HRQ----------------------------------------------------------------------------- 296 (383)
T ss_dssp BCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred eeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCC
Q 002264 753 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 832 (945)
Q Consensus 753 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 832 (945)
..|...+. +.|+|+ .
T Consensus 297 --------~~~~~~~~-~~~~p~--------------------------------------------------------~ 311 (383)
T 3ei3_B 297 --------FQHLTPIK-ATWHPM--------------------------------------------------------Y 311 (383)
T ss_dssp --------CTTSCCCC-CEECSS--------------------------------------------------------S
T ss_pred --------cccccceE-EeccCC--------------------------------------------------------C
Confidence 00112222 233333 3
Q ss_pred ceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecC--CCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 833 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 833 ~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
.+..++|+||+++ +++ |+.|+|||+.+++++.++.+ |.+.+.+++|+| ++++|++|+ ||.|+|||+++
T Consensus 312 ~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 312 DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 4556788999988 666 89999999999999999987 456788889999 899999997 99999999874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-34 Score=319.28 Aligned_cols=296 Identities=13% Similarity=0.187 Sum_probs=240.4
Q ss_pred cceEEee--cCCCcEEEEEEeC-CCCeEEEEEeCcCcEEEEEcCC---CCcccccccccccccccCcccccccccCCCcc
Q 002264 335 RTVAVSL--HQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM---RDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (945)
Q Consensus 335 ~~~~~~~--~h~~~V~~v~fsp-~g~~llasgs~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (945)
+.....+ +|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +.... .....+|...
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~-----------------~~~~~~h~~~ 113 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYS-----------------SSLTYDCSST 113 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCS-----------------CSEEEECSSC
T ss_pred ceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccc-----------------eeeeccCCCC
Confidence 4555555 4899999999999 998 599999999999999876 33111 0112258999
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcc---CCcccccce-----e--ecc--ccccEEEEE--EecCCCeeEEEEEeCC
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYA---GSNDLRQHS-----Q--IDA--HVGAVNDLA--FAYPNKLLCVVTCGDD 474 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~---~~~~~~~~~-----~--~~~--h~~~v~~l~--~s~~~~~~~l~s~s~d 474 (945)
|.+++|+|++++|++|+.||.|++||+. +++...... . +.. +...+.++. +++++. ++++|+.|
T Consensus 114 v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d 191 (437)
T 3gre_A 114 VTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALTNL 191 (437)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEETT
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEeCC
Confidence 9999999999999999999999999995 444332110 1 111 556677777 557777 89999999
Q ss_pred CcEEEEe-CCCceEEEecC--CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-CCCCeEEEEEEcC--
Q 002264 475 KLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA-- 548 (945)
Q Consensus 475 ~~i~vwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~-- 548 (945)
+.|++|| .+++.+..+.+ |...|++++|+| ++.+|++|+.||.|++||++++.....+. .+...|.+++|+|
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence 9999999 88999999988 899999999977 56899999999999999999988877775 5666899996654
Q ss_pred --CCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-------------------------CcceEEEEEcCCCCEEE
Q 002264 549 --DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------------------KKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 549 --~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~ 601 (945)
++.+|++++. ++.|++||+.+++.+..+.++. ...+.+++|+ ++++|+
T Consensus 270 s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~ 344 (437)
T 3gre_A 270 GKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL 344 (437)
T ss_dssp CTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred CCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence 6778888875 8999999999999888877542 2347788999 778999
Q ss_pred EEECCCcEEEEECCCCeeEEEeecCC-----------------------------------CCCCccEEEEcCC--CCEE
Q 002264 602 AVGEDSQIKFWDMDNVNILTSTDAEG-----------------------------------GLPNLPRLRFSKE--GNLL 644 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~v~~sp~--g~~l 644 (945)
+|+.||.|++||+.+++....+..+. |...|++++|+++ +.+|
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEE
T ss_pred ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEE
Confidence 99999999999999988777766531 5568999999998 8899
Q ss_pred EEEECCCcEEEEE
Q 002264 645 AVTTADNGFKILA 657 (945)
Q Consensus 645 ~~~~~dg~i~iw~ 657 (945)
++|+.||.|+||+
T Consensus 425 ~s~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VACDNSGLIGIFQ 437 (437)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCceEEEeC
Confidence 9999999999994
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=320.52 Aligned_cols=285 Identities=13% Similarity=0.091 Sum_probs=224.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCC--CcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.++ +.+ ..+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~-------------------~~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHA-------------------RTFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEEC-------------------CCBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEE-------------------EEEecCCceEEEEEEeCCCCE
Confidence 667999999999999 5999999999999999877 333 337789999999999999999
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc---eEEEecC-CCC
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEG-HEA 495 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~---~~~~~~~-~~~ 495 (945)
|++|+.|+.|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++|| ..++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873334446778999999999999999 899999999999999 5555 3677777 999
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccC------------------CCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.|.+++|+| ++.+|++++.|+.|++||+.. +.....+ .+...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999987 568999999999999999853 2233344 7778899999999999999998
Q ss_pred ecCCCCceEEEEeCCCCce----eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe---------------
Q 002264 558 TSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--------------- 618 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 618 (945)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 5 89999999999887 778888876 79999999999988888766555 77664211
Q ss_pred ------------------------eEEEeec-----------CCCCCCccEEEEcCC-CC---EEEEEECCCcEEEEEC
Q 002264 619 ------------------------ILTSTDA-----------EGGLPNLPRLRFSKE-GN---LLAVTTADNGFKILAN 658 (945)
Q Consensus 619 ------------------------~~~~~~~-----------~~~~~~v~~v~~sp~-g~---~l~~~~~dg~i~iw~~ 658 (945)
....... ..|...|+++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 115568999997664 33 6999999999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-33 Score=330.76 Aligned_cols=249 Identities=20% Similarity=0.275 Sum_probs=215.4
Q ss_pred ccccCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCCccc--ccceeeccccccEEEEEEecCCCeeEEEEEeCCCc
Q 002264 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~ 476 (945)
..+.+|.+.|++++|+|+ +++|++|+.|++|++|++.++... .....+.+|...|.+++|+|+++ +|++|+.|++
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~ 453 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGE 453 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCc
Confidence 357899999999999986 479999999999999999865432 12236789999999999999999 8999999999
Q ss_pred EEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe---cCCCCeEEEEEEcCCC--
Q 002264 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADG-- 550 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~s~~~-- 550 (945)
|++|| .++..+..+.+|...|.+++|+| ++.+|++++.|++|++||.......... ..|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 99999 88889999999999999999987 5689999999999999997654332222 3466789999999987
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
..+++++. |+.|++||+++++....+.+|.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+..+ .
T Consensus 532 ~~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~ 603 (694)
T 3dm0_A 532 PTIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---S 603 (694)
T ss_dssp CEEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---S
T ss_pred ceEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---C
Confidence 57888875 89999999999999999999887 8999999999999999999999999999999988777543 3
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|.+++|+|++.++++++ ++.|++||+.++
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 799999999999888776 456999999887
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=308.57 Aligned_cols=252 Identities=9% Similarity=0.071 Sum_probs=216.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc---cccceeeccccccEEEEEEecC----C---CeeEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYP----N---KLLCVV 469 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~----~---~~~~l~ 469 (945)
..+.+|.+.|++++|+| ++|++|+.||.|++|++.+++. ......+.+|...|.+++|+|+ + . +|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEE
Confidence 45789999999999999 8999999999999999998761 1123367789999999999999 8 8 899
Q ss_pred EEeCCCcEEEEe-CCCce-----EEEecCC-----CCCEEEEEeeec--CCccE-EEEEEcCCeEEEEEccC------CC
Q 002264 470 TCGDDKLIKVWE-LSGRK-----LFNFEGH-----EAPVYSICPHHK--ENIQF-IFSTAIDGKIKAWLYDT------MG 529 (945)
Q Consensus 470 s~s~d~~i~vwd-~~~~~-----~~~~~~~-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~iwd~~~------~~ 529 (945)
+++.|+.|++|| .+++. +..+..| ...|.+++|++. +++.+ |++++.||.|++||+.. ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999 66766 8888888 599999999822 25678 99999999999999988 55
Q ss_pred eeE-----Ee-------cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc---c---cCcceEEE
Q 002264 530 SRV-----DY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKKSNGVV 591 (945)
Q Consensus 530 ~~~-----~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~---~---~~~~~~~~ 591 (945)
... .+ ..+...+.+++|+|++ .+++++. ++.|++||+++++.+..+.. | .. .+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i 239 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSV 239 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCC-ccceE
Confidence 554 55 4467789999999999 8888875 89999999999999999988 6 55 79999
Q ss_pred EEcCCCCEEEEEECC---CcEEEEECCCCeeEEEeecCC-----------CCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 592 QFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 592 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
+|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|++||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999 999999999999998887611 344899999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
+.++
T Consensus 320 ~~~~ 323 (397)
T 1sq9_A 320 VKTK 323 (397)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 9877
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=306.75 Aligned_cols=300 Identities=11% Similarity=0.108 Sum_probs=228.1
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcC-------cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNG-------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
-..+|+|++|+|||+ +||+|+.|. .|++|++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 455899999999998 689987543 5999999776543211110 00112367888899888765
Q ss_pred CCCCEEEEEE-----------CCCcEEEEEccCCcccc-cc-----eeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 416 PDGNYVGVAF-----------TKHLIQLYSYAGSNDLR-QH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 416 ~~g~~las~~-----------~dg~i~vwd~~~~~~~~-~~-----~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
++.+++|. .|+.+++|++.++.... .. .....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 55666653 47789999987654321 11 1122455678999999999954455667899999
Q ss_pred EEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ecCCCCeEEEEEEcCCCCEEEE
Q 002264 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
+|| .+++++..+. |...|.+++|+| +|+++++++.+ .+++|+..++..... ...+...|.+++|+|+++.+++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888876 778899999977 66899888855 566676666665543 3446668999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCce----eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEe-ecCCCCC
Q 002264 556 CGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLP 630 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 630 (945)
++.++.....+++|++..... ...+.+|.. .+.+++|+|+|++|++|+.|+.|+|||+.+++++..+ .+| ..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 987444444788999876643 345566665 7999999999999999999999999999999998875 444 45
Q ss_pred CccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.|++++|+|||++||+|+.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999755
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=304.41 Aligned_cols=246 Identities=15% Similarity=0.132 Sum_probs=214.1
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+..|.++|.+++|+|++++|++|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 112236778999999999999999 899999999999999
Q ss_pred -CCCceE--EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe----eEEecCCCCeEEEEEEcCCCCEEE
Q 002264 482 -LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 482 -~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.+++.. ..+..|...|.+++|++ ++.+|++++.|+.|++||++.... ......+...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 666544 34477999999999987 568999999999999999998773 223355678999999999999999
Q ss_pred EEeecCCCCceEEEEeC------------------CCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 555 SCGTSKDGDSFLVEWNE------------------SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
+++. ++.|++||+ ..++.+..+..|.. .+.+++|+|++++|++++.||.|++||+++
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9985 899999995 46788888887766 799999999999999999999999999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999998886644 89999999999988887 899999999977
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=292.77 Aligned_cols=252 Identities=19% Similarity=0.292 Sum_probs=212.4
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~ 478 (945)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. +...++.+|.++|.+++|+++ ++ +|++|+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 3678999999999999999999999999999999975321 223378899999999999864 77 899999999999
Q ss_pred EEe-CCCc--eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe--eEEecCCCCeEEEEEEcCC----
Q 002264 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSAD---- 549 (945)
Q Consensus 479 vwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~---- 549 (945)
+|| .+++ .+..+.+|...|.+++|+|..++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 6553 567788899999999999865578999999999999999987632 4566788889999999997
Q ss_pred ---------CCEEEEEeecCCCCceEEEEeCCCCc----eeeEeccccCcceEEEEEcCCC---CEEEEEECCCcEEEEE
Q 002264 550 ---------GSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWD 613 (945)
Q Consensus 550 ---------~~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd 613 (945)
+++|++++. |+.|++||+++++ ....+.+|.. .+.+++|+|++ .+|++++.|+.|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 568998885 8999999998765 5667888877 89999999984 8999999999999999
Q ss_pred CCCCe---eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+++.. ....+....+...|.+++|+|+|++||+++.||.|++|+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 98743 222332234456899999999999999999999999999763
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=308.81 Aligned_cols=363 Identities=12% Similarity=0.117 Sum_probs=249.6
Q ss_pred CCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------------CCCC
Q 002264 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------APGH 539 (945)
Q Consensus 474 d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~ 539 (945)
++.+++|+ ..++....+.+|.+.|++++|+|. ++.+|++++.||.|++||+.+......+. .+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 45677888 677778889999999999999772 45799999999999999999876654432 4778
Q ss_pred eEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC---CCEEEEEECCCcEEEEECC
Q 002264 540 WCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 540 ~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~ 615 (945)
.|.+++|+| ++.++++++. ++.|++||+.+++....+... . .+..+.+++. +.++++++.||.|++||+.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp CEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred cEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 999999999 7778888875 899999999999988887632 2 6788888884 4599999999999999999
Q ss_pred CCeeEEEeecCCCCCCccEEEEcCCCC-EEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceec
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
+++.+..+..+. ..|.+++|+|+++ ++++++.||.|++||+.++......+..+.....
T Consensus 175 ~~~~~~~~~~~~--~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------------ 234 (408)
T 4a11_B 175 SGSCSHILQGHR--QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS------------------ 234 (408)
T ss_dssp SSCCCEEECCCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC------------------
T ss_pred CcceeeeecCCC--CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc------------------
Confidence 999888887654 4899999999998 5999999999999999877433333322111000
Q ss_pred cCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEec
Q 002264 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (945)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 774 (945)
..+ .... ..|...|.+++|+|
T Consensus 235 -----------------------------------------~~~---------------~~~~---~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 235 -----------------------------------------QAV---------------ESAN---TAHNGKVNGLCFTS 255 (408)
T ss_dssp -----------------------------------------CCT---------------TTSS---CSCSSCEEEEEECT
T ss_pred -----------------------------------------eee---------------cccc---ccccCceeEEEEcC
Confidence 000 0001 12788999999999
Q ss_pred CCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeE
Q 002264 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKI 854 (945)
Q Consensus 775 dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i 854 (945)
+++++++++.||.|++|++........ . .+.... . ..............+.+++++.++.|
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------~---~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLV-----------N---YGKVCN----N-SKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCC-----------C---CCCCCC----C-CSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred CCCEEEEecCCCeEEEEECCCCcccee-----------c---cccccc----c-ccccceeEEecCCCceEEEEecCCEE
Confidence 999999999999999999764331100 0 000000 0 01122223333344555555559999
Q ss_pred EEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecC-Ccceeeee
Q 002264 855 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST-SLNILVSS 933 (945)
Q Consensus 855 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~ 933 (945)
++||+.+++++..+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+ +...+.+.
T Consensus 317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 392 (408)
T 4a11_B 317 AVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSS 392 (408)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------
T ss_pred EEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeeccc
Confidence 9999999999999999999999999999 8999999999999999999999877665543322 23333 33456677
Q ss_pred cCCceEEEEecC
Q 002264 934 GADAQVTLCVEH 945 (945)
Q Consensus 934 ~~Dg~i~vWdl~ 945 (945)
+.|+.+++|+.+
T Consensus 393 ~~~~~~~~W~~~ 404 (408)
T 4a11_B 393 DEEGGTSAWSHP 404 (408)
T ss_dssp ------------
T ss_pred CccCceeecCCc
Confidence 889999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=305.17 Aligned_cols=303 Identities=16% Similarity=0.180 Sum_probs=240.9
Q ss_pred eecCCCcEEEEEEeC-CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-C
Q 002264 340 SLHQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-D 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp-~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~ 417 (945)
..+|.+.|++++|+| +|+ +|++|+.||.|+|||+.+++.......... .........+|...|.+++|+| +
T Consensus 39 ~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEEECTTC
T ss_pred eeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEEEccCC
Confidence 344999999999999 998 599999999999999998776532110000 0000112346999999999999 7
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC---CCeeEEEEEeCCCcEEEEe-CCCceEEEecCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
+.+|++++.||.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++|| .+++.+..+.+|
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCC
T ss_pred CcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCC
Confidence 8899999999999999999987654 23 37788999999984 44 789999999999999 888889999999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe-eEEe---------------cCCCCeEEEEEEcCCCCEEEEEe
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDY---------------DAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
...|.+++|+|.+. .++++++.||.|++||++.... ...+ ..+...|.+++|+|++++|++++
T Consensus 186 ~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 186 RQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 99999999987532 3699999999999999987652 2222 45677899999999999999998
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
. ++.|++||+.+++....+..+.. ...........+..+++++.++.|++||+.+++.+..+..+. ..|.
T Consensus 265 ~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~v~ 338 (408)
T 4a11_B 265 T----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY--KTVD 338 (408)
T ss_dssp T----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS--SCEE
T ss_pred C----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC--CeEE
Confidence 5 89999999999876655443211 112222233445677788889999999999999999887664 4899
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+++|+|++++|++++.||.|++|++.++.
T Consensus 339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 99999999999999999999999998873
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=290.18 Aligned_cols=282 Identities=15% Similarity=0.254 Sum_probs=235.7
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
...+|+||+++ +||+|. |++|+|||+.+++.+.. ..+.+|...|++++|+|++++||+|+
T Consensus 27 y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~-----------------~~~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE-----------------EEecCCCCeEEEEEECCCCCEEEEEE
Confidence 35789999986 688876 99999999999887632 12567889999999999999999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
.||+|++|++.+++.+. .+.+|...+.++.+. +. .+++++.++.+++|+ .....+..+.+|...+..+.+.
T Consensus 87 ~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp TTSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999997766 677899988876664 55 899999999999999 3446678889999999999987
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCe----eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 579 (945)
+ ++.++++++.||.|++||+.+++. ......+...|.++.++|++..++.... ...++.|++||.........
T Consensus 160 ~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 160 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEE
T ss_pred C--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEeccccccccc
Confidence 6 568999999999999999987653 3345566778999999998776654322 23478999999998887766
Q ss_pred eccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
..... .+..+.|+++++.+++++ .||.|++||+.+++++..+.+|. ..|++++|+|+|++|++|+.||+|+|||
T Consensus 237 ~~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 237 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 55433 588899999999988765 79999999999999999998764 4899999999999999999999999999
Q ss_pred CCCC
Q 002264 658 NAIG 661 (945)
Q Consensus 658 ~~~~ 661 (945)
+.+.
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8653
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=311.12 Aligned_cols=289 Identities=10% Similarity=0.082 Sum_probs=214.3
Q ss_pred cceEEEEEcCCCCEEEEEECCC-------cEEEEECCCCe--------eEEEeecCCCCCCccEEEEcCCCCEEEEEE--
Q 002264 586 KSNGVVQFDTTQNHFLAVGEDS-------QIKFWDMDNVN--------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-- 648 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~--------~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-- 648 (945)
.+|.+++|+|++++|++||.+. .|++|++..+. ....+....+...|.++++ ++..+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence 4799999999999999988543 59999987643 2233334444456777766 456777664
Q ss_pred ---------CCCcEEEEECCCCccccccc---cCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCccc
Q 002264 649 ---------ADNGFKILANAIGLRSLRAV---ENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (945)
Q Consensus 649 ---------~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (945)
.|+.+++|++.+........ ...........+.+++|+|||+++++
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~---------------------- 150 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAI---------------------- 150 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEE----------------------
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEE----------------------
Confidence 46789999987653322221 11111122234678899999988742
Q ss_pred CCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCC
Q 002264 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (945)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~ 796 (945)
++++.|++|++||+...... ..+ . |...|.+++|+|||+++++++.++ +.+|+...
T Consensus 151 -------------as~~~d~~i~iwd~~~~~~~---~~~---~---~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~- 206 (365)
T 4h5i_A 151 -------------ASSKVPAIMRIIDPSDLTEK---FEI---E---TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVT- 206 (365)
T ss_dssp -------------EESCSSCEEEEEETTTTEEE---EEE---E---CSSCCCEEEECTTSSEEEEECSSC-EEEEETTT-
T ss_pred -------------EECCCCCEEEEeECCCCcEE---EEe---C---CCCceEEEEEccCCceEEecccee-EEEEEecc-
Confidence 46667899999998753221 111 1 667899999999999999888665 45554211
Q ss_pred CCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CC----eEEEEeccCceE----EEE
Q 002264 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG----KISLFNMMTFKV----MTT 867 (945)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~----~i~iwd~~~~~~----~~~ 867 (945)
..........+ |...|.+++|+||++++++++ ++ .+++|++..... ...
T Consensus 207 --------------------~~~~~~~~~~~--~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~ 264 (365)
T 4h5i_A 207 --------------------GSCIARKTDFD--KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ 264 (365)
T ss_dssp --------------------CCEEEEECCCC--TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred --------------------CcceeeeecCC--CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee
Confidence 11111111223 788899999999999999998 55 488898876543 456
Q ss_pred ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEE-ecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 868 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 868 ~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+.+|...|++++||| ++++||+|+.|++|+|||+.+++++.. +.+|...|++|+|||||++|||+|.|++|+|||+|
T Consensus 265 ~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 265 VTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred ecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 778999999999999 999999999999999999999999987 47999999999999999999999999999999985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-33 Score=302.63 Aligned_cols=295 Identities=13% Similarity=0.149 Sum_probs=234.8
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC---CCEEEEEECCCcEE
Q 002264 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIK 610 (945)
Q Consensus 534 ~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~ 610 (945)
...|...|.+++|+|++..+++++....+++.|++||+.+++........+...+.+++|+|+ ++++++++.||.|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 456888999999999998777666422238999999999988765544333348999999998 69999999999999
Q ss_pred EEECCCCe-eEEEeecCCCCCCccEEE------EcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 611 FWDMDNVN-ILTSTDAEGGLPNLPRLR------FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 611 iwd~~~~~-~~~~~~~~~~~~~v~~v~------~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
+||+.+++ .+..+..+. ..|.++. |+|++++|++++.||.|++||+.++......+..+..
T Consensus 94 iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---------- 161 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG---------- 161 (357)
T ss_dssp EECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT----------
T ss_pred EEeCCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC----------
Confidence 99999988 777777554 4899995 5789999999999999999999876322222211100
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCC
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (945)
.+
T Consensus 162 ------------------------------------------------------------------------------~~ 163 (357)
T 3i2n_A 162 ------------------------------------------------------------------------------EN 163 (357)
T ss_dssp ------------------------------------------------------------------------------SC
T ss_pred ------------------------------------------------------------------------------CC
Confidence 02
Q ss_pred ccceEEEE----EecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEee
Q 002264 764 SSKVVRLL----YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (945)
Q Consensus 764 ~~~v~~l~----~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~ 839 (945)
...+.+++ |+|+++.+++++.||.|++||+... +... ... |...|.+++|
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~--~~~--~~~~v~~~~~ 217 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------------------ALRW--ETN--IKNGVCSLEF 217 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------------------EEEE--EEE--CSSCEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------------------ceee--ecC--CCCceEEEEc
Confidence 23556666 7889999999999999999986432 1111 122 7789999999
Q ss_pred cC---CCceEEecC-CCeEEEEeccCceEEEEec-----CCCCCeeEEEeecCCCc-eEEEeecCceEEEEecccc----
Q 002264 840 SK---NDSYVMSAT-GGKISLFNMMTFKVMTTFM-----SPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVD---- 905 (945)
Q Consensus 840 s~---dg~~la~~s-d~~i~iwd~~~~~~~~~~~-----~h~~~i~~l~~s~~~~~-~lasg~~dg~v~vwd~~~~---- 905 (945)
+| ++.++++++ ||.|++||+.+++....+. +|...|++++|+| +++ +|++|+.||.|++||+.++
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRS 296 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccc
Confidence 99 999999998 8999999998876655554 8999999999999 777 8999999999999999854
Q ss_pred ---------------eEEEEecCCCcceeEEEecCCcceee-eecCCceEEEEecC
Q 002264 906 ---------------EVKSKLKGHQKRITGLAFSTSLNILV-SSGADAQVTLCVEH 945 (945)
Q Consensus 906 ---------------~~~~~l~~h~~~V~~l~~s~dg~~l~-s~~~Dg~i~vWdl~ 945 (945)
+++..+.+|...|++++|+|++++|+ |++.||.|+|||+.
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 297 KKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp -CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 46778899999999999999999998 89999999999973
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=313.64 Aligned_cols=315 Identities=9% Similarity=0.014 Sum_probs=237.8
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+..+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 346899999999999999999999999 755543 346899999999999998 377777777444
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC-----eEEEEEEcCCCCEEEEEeec
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~~ 559 (945)
..+..+ .|...|.+++|+| +|..|++++.||.|++||.+. ....+. +.. .+.+++|||||++|++++.
T Consensus 77 ~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~- 149 (588)
T 2j04_A 77 NGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE- 149 (588)
T ss_dssp SCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET-
T ss_pred ceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC-
Confidence 443333 4588899999987 678999999999999999543 444445 443 5999999999999999996
Q ss_pred CCCCceEEEEeCCCCce-------eeEe----ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee---EEEeec
Q 002264 560 KDGDSFLVEWNESEGTI-------KRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI---LTSTDA 625 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~ 625 (945)
||.|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|+.|++||+.++.. ...+..
T Consensus 150 ---DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 150 ---DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp ---TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred ---CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 99999999998853 5665 45544 89999999998 88999999999999988774 244532
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccc
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~ 705 (945)
.+...|.+++|+ |+.+|+++ +++|++|++.++.......
T Consensus 224 -~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~------------------------------------- 262 (588)
T 2j04_A 224 -ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT------------------------------------- 262 (588)
T ss_dssp -CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-------------------------------------
T ss_pred -cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-------------------------------------
Confidence 233489999999 68999987 6999999998662111100
Q ss_pred cCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEE--ecCCCeEEEee
Q 002264 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY--TNSAVGLLALG 783 (945)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--s~dg~~l~~~~ 783 (945)
+|...|..++| +||+..+++++
T Consensus 263 --------------------------------------------------------gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 263 --------------------------------------------------------GSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp --------------------------------------------------------SCCSCCCEEEETTCSSCEEEEECS
T ss_pred --------------------------------------------------------CCCceEEEEEeeeCCCCCEEEEEc
Confidence 15566777777 77777777777
Q ss_pred ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCce
Q 002264 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK 863 (945)
Q Consensus 784 ~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~ 863 (945)
.+|+ ++|.. + .++++||+..+|++ |+++++|+...+.
T Consensus 287 edG~-klw~~------------------------------------d-----~~~~spd~~l~a~~-d~~v~lW~~~g~~ 323 (588)
T 2j04_A 287 KTSY-KVLLE------------------------------------D-----ELHVTADNIIAPYL-EKKFKKWSTIWNE 323 (588)
T ss_dssp SCEE-EEEES------------------------------------S-----SEEEECCCSSHHHH-HHHHHHTTTTTTS
T ss_pred CCCC-EEEee------------------------------------c-----cEEECCCceEEEEc-CCEEEEEECCCCc
Confidence 7777 77742 1 25577777777665 6777777765443
Q ss_pred EEEEecCCCCCeeEEEeecCCCceEEEee
Q 002264 864 VMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (945)
Q Consensus 864 ~~~~~~~h~~~i~~l~~s~~~~~~lasg~ 892 (945)
+..+.+ ...|.+++||| ||+++|+++
T Consensus 324 -l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 324 -FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp -SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred -eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 334443 45577777777 777777765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=301.45 Aligned_cols=250 Identities=15% Similarity=0.237 Sum_probs=211.9
Q ss_pred ccccCCCccEEEEEEcCC----CCEEEEEECCCcEEEEEccCCcccccceeec--cccccEEEEEEecC----CCeeEEE
Q 002264 400 SIFKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYP----NKLLCVV 469 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~----g~~las~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~~~l~ 469 (945)
.+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+..+.... .|...|.+++|+|+ +. +|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence 346689999999999984 4566666677799999999887665433322 26688999999999 55 899
Q ss_pred EEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe---cCCCCeEEEEE
Q 002264 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTML 545 (945)
Q Consensus 470 s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~ 545 (945)
+|+.||.|++|| .+++.+..+.+|...|.+++|+|. ++.+|++++.||.|++||+++++....+ ..+...|.+++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 999999999999 889999999999999999999873 4579999999999999999998888877 67888999999
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc----------------------------ccCcceEEEEEcCCC
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG----------------------------FRKKSNGVVQFDTTQ 597 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~ 597 (945)
|+|++++|++++. ++.|++||+++++....+.. |.. .+.+++|+ +
T Consensus 169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~ 241 (366)
T 3k26_A 169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--G 241 (366)
T ss_dssp ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--T
T ss_pred ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--C
Confidence 9999999999985 89999999998765544432 544 78899998 7
Q ss_pred CEEEEEECCCcEEEEECCCCee--------------EEEeecCCCCCCccEEEEcCC--CCEEEEEECCCcEEEEECCCC
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNI--------------LTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~sp~--g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++++++.||.|++||+.++.. +..+..+. ..|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 7999999999999999987643 55565554 48999999999 999999999999999999876
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=313.77 Aligned_cols=300 Identities=13% Similarity=0.218 Sum_probs=232.9
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC------------cc
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP------------IS 408 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 408 (945)
+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCc
Confidence 45778999999999999 5999999999999999887631100000 000113467887 88
Q ss_pred EEEEEEcCCC--CEEEEEECCCcEEEEEccCCcccc------------------------------------ccee-ecc
Q 002264 409 VSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLR------------------------------------QHSQ-IDA 449 (945)
Q Consensus 409 V~~i~~s~~g--~~las~~~dg~i~vwd~~~~~~~~------------------------------------~~~~-~~~ 449 (945)
|.+++|+|++ .+|++++.|+.|++||+.++.... .... ..+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999997643210 0001 357
Q ss_pred ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C-CCceEE-------EecCCCCCEEEEEeeecCCccEEEEEEcCCeE
Q 002264 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLF-------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~-~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
|...|.+++|+|+++ +|++| .|+.|++|| . .++.+. .+.+|...|.+++|+|.+ ..+|++++.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCCeE
Confidence 999999999999999 88998 799999999 4 344444 256899999999998742 2799999999999
Q ss_pred EEEEccCCCe----eEEecCCCC------------eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-CceeeEeccc
Q 002264 521 KAWLYDTMGS----RVDYDAPGH------------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGF 583 (945)
Q Consensus 521 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~ 583 (945)
++||++++.. ...+..+.. .|.+++|+|++++|++++ ++.|++||+++ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998876 567777765 899999999999999886 48999999997 8888888877
Q ss_pred cCcc--------------eEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC-----------------------
Q 002264 584 RKKS--------------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----------------------- 626 (945)
Q Consensus 584 ~~~~--------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 626 (945)
.... +..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 5310 223899999999999999999999999998876422110
Q ss_pred -------CCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 627 -------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 627 -------~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.....|..++|+|++++||+++.++ +.+|..+
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1224688999999999999998774 8888653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=288.14 Aligned_cols=250 Identities=14% Similarity=0.200 Sum_probs=206.4
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC--
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-- 417 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-- 417 (945)
..+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++
T Consensus 5 ~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~-----------------~~~~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHK-----------------LIDTLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBC-----------------CCEEECCCSSCEEEEEECCGGG
T ss_pred ccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcE-----------------EEEEEccccCCeEEEEecCCCc
Confidence 346999999999999999 5999999999999999754211 01347899999999999874
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCCc--eEEEecC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEG 492 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~~--~~~~~~~ 492 (945)
+++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++|| ..+. ....+.+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred CCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeec
Confidence 899999999999999999887422 22256789999999999998 77 899999999999999 5442 2466789
Q ss_pred CCCCEEEEEeeecC-----------CccEEEEEEcCCeEEEEEccCCC----eeEEecCCCCeEEEEEEcCCC---CEEE
Q 002264 493 HEAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG---SRLF 554 (945)
Q Consensus 493 ~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~~---~~l~ 554 (945)
|...|.+++|+|.. ++++|++|+.|++|++||++... ....+..|...|.+++|+|++ .+|+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 99999999998852 25799999999999999998766 445677889999999999985 7888
Q ss_pred EEeecCCCCceEEEEeCCCCc---eeeEe--ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 555 SCGTSKDGDSFLVEWNESEGT---IKRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
+++. |+.|++||+.+.. ....+ ..+.. .+..++|+|++++|++++.||.|++|+..
T Consensus 224 s~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8885 9999999987743 12223 33433 78999999999999999999999999976
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=311.01 Aligned_cols=242 Identities=14% Similarity=0.106 Sum_probs=200.5
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC--cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+..|.++|++++|+|+|++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3346779999999999999999999999999999987 4444 6778999999999999999 8999999999999
Q ss_pred Ee-CCCc---eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe---eEEecC-CCCeEEEEEEcCCCC
Q 002264 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDA-PGHWCTTMLYSADGS 551 (945)
Q Consensus 480 wd-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~~~~ 551 (945)
|| .+++ ....+.+|...|.+++|+| ++.+|++++.|+.|++||++..+. ...+.. |...|.+++|+|+++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 99 6655 6788889999999999987 568999999999999999998763 556666 888999999999999
Q ss_pred EEEEEeecCCCCceEEEEeCC------------------CCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 552 RLFSCGTSKDGDSFLVEWNES------------------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 613 (945)
+|++++. ++.|++||+. .++.+..+ +|.. .+.+++|+|++++|++++.||.|++||
T Consensus 160 ~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 160 LLAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999986 8999999985 34556666 5555 799999999999999999999999999
Q ss_pred CCCCee----EEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 614 MDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 614 ~~~~~~----~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+.+++. +..+..+. ..|.+++|+|+|++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999877 55666554 489999999999999998766655 66665
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=285.71 Aligned_cols=240 Identities=15% Similarity=0.227 Sum_probs=210.9
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
..+.+|.+.|.+++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~ 85 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMING 85 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEE
Confidence 457899999999999 999999999999999999998876555 5678999999999999999 8999999999999
Q ss_pred Ee-CC---CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcC-CCCEEE
Q 002264 480 WE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLF 554 (945)
Q Consensus 480 wd-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~ 554 (945)
|+ .. ++.+..+.+|...|.+++|. +.++++++.||.|++|| .......+..+...+.++.|+| ++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 99 33 35678889999999999982 36899999999999999 6667778888899999999988 899999
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+++. ++.|++|| .++....+.......+.+++|+|++. +++++.||.|++||+++++.+..+..+.. .|.+
T Consensus 160 ~~~~----d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~ 230 (313)
T 3odt_A 160 TASA----DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYC 230 (313)
T ss_dssp EEET----TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEE
T ss_pred EEEC----CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEE
Confidence 9885 89999999 55677777774455899999999987 99999999999999999999998876654 8999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++|+|++ .+++++.||.|++||+.++
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCC
Confidence 9999999 5889999999999999766
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=302.96 Aligned_cols=288 Identities=14% Similarity=0.174 Sum_probs=223.7
Q ss_pred cCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCCCceee--EeccccCcceEEEEEcC-CCCEEEEEECCCcEE
Q 002264 535 DAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIK 610 (945)
Q Consensus 535 ~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~ 610 (945)
..+...|++++|+| ++++|++++. ||.|++||+.+++... .+.+|.. .|.+++|+| ++++|++++.||+|+
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~----dg~i~lWd~~~~~~~~~~~~~gH~~-~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSK----GGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEET----TSCEEEECSSCCSCCEEECCCSSSC-CCCEEEECSSCTTEEEEECSSSCEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeC----CCEEEEEECCCCCceeEEEccCCCC-CEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34566799999999 5668888875 8999999998776443 4456766 899999998 688999999999999
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccc
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
+||++++........+.....+.+++|+|++++|++|+.||.|++||+... . +..
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~-~~~----------------------- 245 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-E-LWN----------------------- 245 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-B-CCC-----------------------
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-e-eEE-----------------------
Confidence 999988766555555555556889999999999999999999999998532 1 100
Q ss_pred ceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEE
Q 002264 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (945)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 770 (945)
+ .+|...|.++
T Consensus 246 ------------------------------------------------------------------~---~~h~~~v~~v 256 (435)
T 4e54_B 246 ------------------------------------------------------------------L---RMHKKKVTHV 256 (435)
T ss_dssp ------------------------------------------------------------------S---BCCSSCEEEE
T ss_pred ------------------------------------------------------------------E---ecccceEEee
Confidence 0 1177789999
Q ss_pred EEecCCC-eEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEec
Q 002264 771 LYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (945)
Q Consensus 771 ~~s~dg~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~ 849 (945)
+|+|++. .+++++.|+.|++||+..... .........|...|++++|+|||++|+++
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~----------------------~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRG----------------------KASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCS----------------------SSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred eecCCCceEEEEecCcceeeEEecccccc----------------------cceEEEeeeccccccceeECCCCCeeEEE
Confidence 9999887 566778899999998643221 00001111288999999999999999999
Q ss_pred C-CCeEEEEeccCceEEEEecCCCCC------eeEEEeecCCCceEEEee------------cCceEEEEecccceEEEE
Q 002264 850 T-GGKISLFNMMTFKVMTTFMSPPPA------STFLAFHPQDNNIIAIGT------------EDSTIHIYNVRVDEVKSK 910 (945)
Q Consensus 850 s-d~~i~iwd~~~~~~~~~~~~h~~~------i~~l~~s~~~~~~lasg~------------~dg~v~vwd~~~~~~~~~ 910 (945)
+ |++|+|||+.+++....+..|... +....|+| ++.++++++ .++.|++||..+|+++..
T Consensus 315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 9 899999999999888877766532 34456666 555555543 346799999999999888
Q ss_pred ec-CCCcceeEE-EecCCcceeeeecCCceEEEEecC
Q 002264 911 LK-GHQKRITGL-AFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 911 l~-~h~~~V~~l-~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+. +|...|.++ +|+|+|++|++|+ |++|+|||+.
T Consensus 394 l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 394 LYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp ECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred EeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 64 688899988 6999999999876 7899999973
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=301.34 Aligned_cols=273 Identities=19% Similarity=0.292 Sum_probs=235.9
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
+|...|+|++| +|+ +|++|+.||+|++||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788999887 677 59999999999999999887653 37789999999999 78999
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE---EEecCCCCCE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPV 497 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~---~~~~~~~~~v 497 (945)
++|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++|| .++... ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999987665 6778999999999974 4 799999999999999 666544 6788999999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
.++++ ++.++++|+.||.|++||+++++....+..+...|.++.+ +++++++++. ++.|++||+++++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99998 3479999999999999999999999999999999999998 4678998885 899999999999999
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe---------eEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
..+.+|.. .+.++++ ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEEEEEe
Confidence 99998876 7888888 68899999999999999997665 677776554 48999999 788999999
Q ss_pred CCCcEEEEECCCCc
Q 002264 649 ADNGFKILANAIGL 662 (945)
Q Consensus 649 ~dg~i~iw~~~~~~ 662 (945)
.||.|++||+.+..
T Consensus 403 ~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 403 HDDTILIWDFLNDP 416 (435)
T ss_dssp SSSEEEEEC-----
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998763
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=328.03 Aligned_cols=433 Identities=14% Similarity=0.105 Sum_probs=319.6
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
+.+.+.+.+|||+ . ||..+ ++.|.+|++.+++.. .+.+|...+.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~-~~~l~~~~~~gg~~~--------------------~lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVC-CDDLWEHDLKSGSTR--------------------KIVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEE-TTEEEEEETTTCCEE--------------------EEECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEE-CCcEEEEECCCCcEE--------------------EeeeCCCcccCeEECCCCCEEE
Confidence 4568999999964 4 55555 378999999877543 2667999999999999999999
Q ss_pred EEECC------CcEEEEEccCCcccccceeeccccccE-------EEEEEecCCCeeEEEEEeCC------CcEEEEeCC
Q 002264 423 VAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDD------KLIKVWELS 483 (945)
Q Consensus 423 s~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v-------~~l~~s~~~~~~~l~s~s~d------~~i~vwd~~ 483 (945)
+++.+ ..|++|++.+++. + .+..|...+ .+++|+|||+ ++++++.+ ..|.+|+..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999988753 2 567788888 9999999998 77777754 357778854
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEc------------CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCC
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI------------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 551 (945)
+.....+..+. ...++|+| | ++++++. +...++|..........+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 44445555443 34566765 5 7777753 345667754444555566788889999999988 4
Q ss_pred EEEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC---
Q 002264 552 RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--- 627 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 627 (945)
.++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|+.++++. ++.|++|++..... ..+..+.
T Consensus 216 l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGDLES 287 (1045)
T ss_dssp EEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCCCCB
T ss_pred EEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCcccc
Confidence 444443 256667776542 33444455444 345679999999888874 89999999955443 3443321
Q ss_pred ------CCCCccEEEEc-CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 628 ------GLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 628 ------~~~~v~~v~~s-p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
+...+.+++|+ |||+.+++++ ++.|.+|+..++.. .. +
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~~-~-------------------------------- 332 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-LK-V-------------------------------- 332 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-EE-C--------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-EE-c--------------------------------
Confidence 12258899999 9999999887 77899988765410 00 0
Q ss_pred ccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCcc-ceEEEEEecCCCeE
Q 002264 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS-KVVRLLYTNSAVGL 779 (945)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~dg~~l 779 (945)
.. +.. .+..++|+ ||+.+
T Consensus 333 ---------------------------------------------------------~~---~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 333 ---------------------------------------------------------PE---PLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp ---------------------------------------------------------SC---CSCEEEEEECSS-SEEEE
T ss_pred ---------------------------------------------------------cC---CCcceEEeeeEc-CCCeE
Confidence 00 333 56788888 88888
Q ss_pred EEeeecCeEE-EEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEE
Q 002264 780 LALGSNGVQK-LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (945)
Q Consensus 780 ~~~~~dg~i~-lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iw 857 (945)
++++.++.+. +|++. ++.... +.+ |...+.+++|||||++||+++ ++.|++|
T Consensus 352 ~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYR----------------------TGKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEETTEEEEEEEETT----------------------TCCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCceEEEEECC----------------------CCCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 8888776666 66542 222211 223 677899999999999999988 7899999
Q ss_pred eccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCc----------eEEEEecccceEEEEecCCCcceeEEEecCCc
Q 002264 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----------TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 927 (945)
Q Consensus 858 d~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg----------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 927 (945)
|+.+++....+.+|.+.+.+++||| ||++||+++.++ .|++||+.+++ +..+..|...+.+++|+|||
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS
T ss_pred ECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC
Confidence 9999998888878999999999999 899998887654 89999999987 77888899999999999999
Q ss_pred ceeeeecCCceEEEEec
Q 002264 928 NILVSSGADAQVTLCVE 944 (945)
Q Consensus 928 ~~l~s~~~Dg~i~vWdl 944 (945)
++|++++.++...+|+.
T Consensus 484 ~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CEEEEEESCCCCCEECS
T ss_pred CEEEEEecccCCcCcch
Confidence 99999998888888864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=294.84 Aligned_cols=280 Identities=15% Similarity=0.217 Sum_probs=227.2
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
.++.++|+++ +.|+++. |+.|++||..+++....+..+. ...|++++|+|+|++|++|+.||.|++||+.+++
T Consensus 107 y~~~l~wS~~-n~lAvgl-----d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cceeEEECCC-CEEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 4567899976 4666654 8899999999999888776432 2369999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
.+..+..|.. .+.++++ ++.++++|+.|+.+++|+..........
T Consensus 181 ~~~~~~~h~~--~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~------------------------------- 225 (420)
T 4gga_A 181 RLRNMTSHSA--RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT------------------------------- 225 (420)
T ss_dssp EEEEECCCSS--CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------------------------------
T ss_pred EEEEEeCCCC--ceEEEee--CCCEEEEEeCCCceeEeeecccceeeEE-------------------------------
Confidence 9998876644 6777666 5789999999999999998654211111
Q ss_pred CCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCe
Q 002264 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (945)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 778 (945)
+. +|...+..+.++|+|+.
T Consensus 226 ----------------------------------------------------------~~---~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 226 ----------------------------------------------------------LS---GHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp ----------------------------------------------------------EE---CCSSCEEEEEECTTSSE
T ss_pred ----------------------------------------------------------ec---ccccceeeeeecCCCCe
Confidence 11 17778899999999999
Q ss_pred EEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc-eEEe--cC-CCeE
Q 002264 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMS--AT-GGKI 854 (945)
Q Consensus 779 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~-~la~--~s-d~~i 854 (945)
+++++.||.+++|+........ ........ |...|.+++|+|++. ++++ |+ |++|
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~-------------------~~~~~~~~--~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGW-------------------VPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCS-------------------CCSEEECC--CSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred eeeeeccccceEEeeccccccc-------------------eeeeeecc--cCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 9999999999999865432110 00011222 788999999999765 4444 34 7899
Q ss_pred EEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee--cCceEEEEecccceEEEEecCCCcceeEEEecCCcceeee
Q 002264 855 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS 932 (945)
Q Consensus 855 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s 932 (945)
++||+.++++...+..| ..+.++.|++ +++.+++++ .||.|+|||+.+++++..+.+|.+.|++|+|+|||++|+|
T Consensus 304 ~iwd~~t~~~~~~~~~~-~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp EEEETTTTEEEEEEECS-SCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred EEEeCCccccceeeccc-cceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99999999999988854 5689999999 777776654 7999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEec
Q 002264 933 SGADAQVTLCVE 944 (945)
Q Consensus 933 ~~~Dg~i~vWdl 944 (945)
||.|++|+|||+
T Consensus 382 ~s~D~tvriWdv 393 (420)
T 4gga_A 382 AAADETLRLWRC 393 (420)
T ss_dssp EETTTEEEEECC
T ss_pred EecCCeEEEEEC
Confidence 999999999997
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=290.83 Aligned_cols=279 Identities=10% Similarity=0.113 Sum_probs=235.8
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC-E
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~-~ 420 (945)
+|.+.|++++|+|+|+ +|++|+.||.|+||++.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 5899999999999999 58999999999999998776211 0012447999999999999999 9
Q ss_pred EEEEECCCcEEEEEc-cCCcccccceeecc--ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC---------CceE
Q 002264 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS---------GRKL 487 (945)
Q Consensus 421 las~~~dg~i~vwd~-~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~---------~~~~ 487 (945)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 87654 25778 999999999999 87 899999999999999 65 6656
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCe--eEEecCCCCeEEEEEEcC-CCCEEEEEeecCCCC
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGD 563 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~ 563 (945)
..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 6666 889999999975 33 99999999999999988 443 334455677899999999 9999999985 8
Q ss_pred ceEEEEeCCCC------ceeeEeccccC--------cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 564 SFLVEWNESEG------TIKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 564 ~~i~iwd~~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
+.+++|++... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+. .
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~ 294 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-E 294 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-S
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-C
Confidence 99999999887 77777877643 268999999999999999999999999999999998887651 3
Q ss_pred CCccEEEEcCCCCEEEEEECCCc-EEEE
Q 002264 630 PNLPRLRFSKEGNLLAVTTADNG-FKIL 656 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~dg~-i~iw 656 (945)
..|.+++ |++++|++++.||. .+.+
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred CCceEec--CCCCeEEEEecCCcccccc
Confidence 4899999 99999999999998 4443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=301.59 Aligned_cols=295 Identities=13% Similarity=0.159 Sum_probs=240.1
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC-CCCEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~g~~las~ 424 (945)
...+++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++|++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4557899999876667788999999999865433210 1134778999999999999 99999999
Q ss_pred ECCCcEEEEEccCCccc----ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe--cCCCCCE
Q 002264 425 FTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPV 497 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~--~~~~~~v 497 (945)
+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987432 223367899999999999999843 899999999999999 888888898 8899999
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCCCe-EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.+++|+| ++.+|++++.||.|++||+++++....+ ..+... +.++.|+|++++++++.. ...++.|++||+++++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 9999987 6689999999999999999998888877 566654 899999999998888721 1238999999999876
Q ss_pred e-eeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCee-EEEeecCCCCCCccEEEEcCCCCEEEEEECCCc
Q 002264 576 I-KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 576 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
. ...........+..++|+|+++.+++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 3333323333688999999999997655 799999999998874 555555445568999999999998875 4679
Q ss_pred EEEEECCCC
Q 002264 653 FKILANAIG 661 (945)
Q Consensus 653 i~iw~~~~~ 661 (945)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999875
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-30 Score=278.41 Aligned_cols=279 Identities=15% Similarity=0.194 Sum_probs=223.7
Q ss_pred EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 541 i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
.+.++||+++ .|+++. |+.|++||+.+++.++.+..+. ...|.+++|+|+++++++|+.||.|++||+++++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 4678999886 565553 8899999999999988876432 23699999999999999999999999999999999
Q ss_pred EEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCC
Q 002264 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (945)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~ 699 (945)
+..+..|.. .+ .++++++..+++++.++.+++|+..........+
T Consensus 102 ~~~~~~h~~--~~--~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~------------------------------- 146 (318)
T 4ggc_A 102 LRNMTSHSA--RV--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL------------------------------- 146 (318)
T ss_dssp EEEEECCSS--CE--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE-------------------------------
T ss_pred EEEecCccc--eE--EEeecCCCEEEEEecCCceEeeecCCCceeEEEE-------------------------------
Confidence 998887643 44 4556677899999999999999886552211111
Q ss_pred CccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeE
Q 002264 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779 (945)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 779 (945)
. +|...+..++++++++.+
T Consensus 147 ----------------------------------------------------------~---~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 147 ----------------------------------------------------------S---GHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp ----------------------------------------------------------E---CCSSCEEEEEECTTSSEE
T ss_pred ----------------------------------------------------------c---CccCceEEEEEcCCCCEE
Confidence 1 166788899999999999
Q ss_pred EEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceE---EecC-CCeEE
Q 002264 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV---MSAT-GGKIS 855 (945)
Q Consensus 780 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~l---a~~s-d~~i~ 855 (945)
++++.||.|++||+....... ........ +...|.+++++|++..+ ++++ +++|+
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~-------------------~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGW-------------------VPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBS-------------------CCSEEECC--CCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EEEecCcceeEEECCCCcccc-------------------cceeeecc--cCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 999999999999875432100 00011122 67889999999987644 3455 68899
Q ss_pred EEeccCceEEEEecCCCCCeeEEEeecCCCceEEEe--ecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeee
Q 002264 856 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG--TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 856 iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg--~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~ 933 (945)
+||........... +...+.++.|+| ++..++++ +.|+.|+|||+.+++++..+.+|.+.|++|+|+|||++|+|+
T Consensus 225 lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 225 IWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 99999888766654 677899999999 66666554 489999999999999999999999999999999999999999
Q ss_pred cCCceEEEEec
Q 002264 934 GADAQVTLCVE 944 (945)
Q Consensus 934 ~~Dg~i~vWdl 944 (945)
|.||+|+|||+
T Consensus 303 s~D~~v~iWd~ 313 (318)
T 4ggc_A 303 AADETLRLWRC 313 (318)
T ss_dssp ETTTEEEEECC
T ss_pred ecCCeEEEEEC
Confidence 99999999997
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=290.75 Aligned_cols=250 Identities=17% Similarity=0.293 Sum_probs=204.1
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i 477 (945)
.++.+|.+.|++++|+|+|++||+|+.|++|++||+.++... ....+.+|.+.|.+++|+++ ++ +|++|+.|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v 83 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKV 83 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEE
Confidence 347789999999999999999999999999999999886431 22367899999999999863 77 89999999999
Q ss_pred EEEe-CCC--ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCe---eEEecCCCCeEEEEEEcCC--
Q 002264 478 KVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD-- 549 (945)
Q Consensus 478 ~vwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~-- 549 (945)
++|| .++ ..+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 9999 655 4667888999999999999875578999999999999999987543 2344567778999999997
Q ss_pred ---------------CCEEEEEeecCCCCceEEEEeCCCC---ceeeEeccccCcceEEEEEcCCC----CEEEEEECCC
Q 002264 550 ---------------GSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDS 607 (945)
Q Consensus 550 ---------------~~~l~~~~~~~d~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg 607 (945)
+++|++++. |+.|++||+... +....+.+|.. .+.+++|+|++ ..|++++.||
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp C------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTC
T ss_pred CccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCC
Confidence 468888875 899999999755 46677888876 89999999986 8899999999
Q ss_pred cEEEEECCCC---e-eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 608 QIKFWDMDNV---N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 608 ~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
.|++|++.+. . ....+..+ ...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 239 ~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999998762 1 12223333 3489999999999999999999999999975
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=290.12 Aligned_cols=289 Identities=17% Similarity=0.239 Sum_probs=236.1
Q ss_pred CcceEEeec-CCCcEEEEEEeCC---CCeEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCcc
Q 002264 334 PRTVAVSLH-QGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (945)
Q Consensus 334 ~~~~~~~~~-h~~~V~~v~fsp~---g~~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (945)
+......+. |.+.|+|++|+|+ |+ +|++|+.||.|+|||+.+ +..+. ..+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCC
Confidence 344555554 9999999999999 56 699999999999999987 33321 236779999
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEE--ecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF--AYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~--s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
|.+++|+|++++|++|+.||.|++||+.+++.+. +.+|...|.+++| ++++. +|++++.|+.|++|| .+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999886553 5579999999999 88888 899999999999999 8888
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--CCCeEEEEEEcCCCCE----EEEEeec
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSR----LFSCGTS 559 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~----l~~~~~~ 559 (945)
.+..+..+. .+.++.+.+ ..+++++.++.+++|+++.......... ....+.++.+.++... +++++.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI- 236 (368)
T ss_dssp CSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-
T ss_pred EEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-
Confidence 888888665 566666542 4788999999999999987665543322 3345666666665554 788775
Q ss_pred CCCCceEEEEeCCCC---ceeeEeccccCc-----------ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 560 KDGDSFLVEWNESEG---TIKRTYAGFRKK-----------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
++.|++||+... .....+.+|... .+.+++|+|++++|++++.||.|++||+.+++++..+..
T Consensus 237 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 237 ---EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ---TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 999999999987 556677776542 589999999999999999999999999999999988876
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
+. ..|.+++|+|+|++|++++.|+..+.|+.
T Consensus 314 ~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 314 LD--QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CS--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CC--CCceEEEECCCCCeEEEEecccccccccc
Confidence 54 48999999999999999999875554443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=289.51 Aligned_cols=249 Identities=15% Similarity=0.217 Sum_probs=202.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CC
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g 418 (945)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|++ ++
T Consensus 10 ~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp ----CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGS
T ss_pred ccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCC
Confidence 36999999999999999 59999999999999998764321 133778999999999986 48
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCCce---EEEecC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEG 492 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~~~---~~~~~~ 492 (945)
++|++|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 99999999999999999886422 22357789999999999998 66 899999999999999 54422 345678
Q ss_pred CCCCEEEEEeeecC---------------CccEEEEEEcCCeEEEEEccCCC---eeEEecCCCCeEEEEEEcCCC----
Q 002264 493 HEAPVYSICPHHKE---------------NIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADG---- 550 (945)
Q Consensus 493 ~~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~~---- 550 (945)
|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSC
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCC
Confidence 99999999998752 14689999999999999997552 445677888899999999987
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCc----eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
.+|++++. |+.|++||+.+.. ....+..|.. .+.+++|+|++++|++++.||.|++|+..
T Consensus 229 ~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 229 STIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ceEEEEcC----CCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999885 9999999987631 2233445544 79999999999999999999999999975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=292.78 Aligned_cols=239 Identities=17% Similarity=0.200 Sum_probs=205.1
Q ss_pred CCCcc--EEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 404 DVPIS--VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 404 ~h~~~--V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
+|... +.+++|++ ..+++++.|+.|++||+.+++.... +. .|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~---~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSAL---AETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEE---EECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEe---eecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 45444 45566664 5688888999999999999876552 33 3889999999999999 89999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
| .+++.+..+.+|...|.+++|+ +.++++++.||.|++||++. ......+..+...|.+++|+|++++|++++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 9 8889999999999999999983 36899999999999999984 5556678889999999999999999999985
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCC-EEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCccEE
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (945)
++.|++||+++++....+..|.. .+.+++|+|++. .+++++ .||.|++||+.+++.+..+..+ ..|.++
T Consensus 238 ----d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~ 309 (401)
T 4aez_A 238 ----DNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSL 309 (401)
T ss_dssp ----TSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEE
T ss_pred ----CCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEE
Confidence 89999999999999999888876 799999999775 555554 6999999999999999888643 379999
Q ss_pred EEcCCCCEEEEEE--CCCcEEEEECCCC
Q 002264 636 RFSKEGNLLAVTT--ADNGFKILANAIG 661 (945)
Q Consensus 636 ~~sp~g~~l~~~~--~dg~i~iw~~~~~ 661 (945)
+|+|+++.+++++ .||.|++|++.++
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 9999999999954 8999999998654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-31 Score=296.70 Aligned_cols=249 Identities=12% Similarity=0.180 Sum_probs=204.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc--------cccceeecccc------------ccEEEEEEecCC
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHV------------GAVNDLAFAYPN 463 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~--------~~~~~~~~~h~------------~~v~~l~~s~~~ 463 (945)
.|.+.|++++|+|+|++||+|+.||.|+||++.+++. ......+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3678999999999999999999999999999987752 11233677898 889999999998
Q ss_pred --CeeEEEEEeCCCcEEEEe-CCCceE---------------------------------------EE-ecCCCCCEEEE
Q 002264 464 --KLLCVVTCGDDKLIKVWE-LSGRKL---------------------------------------FN-FEGHEAPVYSI 500 (945)
Q Consensus 464 --~~~~l~s~s~d~~i~vwd-~~~~~~---------------------------------------~~-~~~~~~~v~~~ 500 (945)
. .|++++.|++|++|| ..+... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 6 899999999999999 443321 12 36899999999
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--------ecCCCCeEEEEEEcCCC-CEEEEEeecCCCCceEEEEeC
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--------YDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~~~-~~l~~~~~~~d~~~~i~iwd~ 571 (945)
+|+| ++.+|++| .|+.|++||++....... +..+...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9987 56899998 899999999985443332 45677899999999998 89999885 899999999
Q ss_pred CCCce----eeEeccccC-----------cceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCC----
Q 002264 572 SEGTI----KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPN---- 631 (945)
Q Consensus 572 ~~~~~----~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 631 (945)
++++. ...+..+.. ..+.+++|+|++++|++++. |.|++||+++ ++++..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 677877764 27999999999999999999 9999999997 888877776642111
Q ss_pred ---------ccEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002264 632 ---------LPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 632 ---------v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~ 662 (945)
+..++|+|++++|++++.||.|++||+.++.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 2349999999999999999999999998873
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=288.69 Aligned_cols=298 Identities=9% Similarity=0.115 Sum_probs=218.2
Q ss_pred EeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--
Q 002264 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-- 416 (945)
Q Consensus 339 ~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-- 416 (945)
...+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~ 69 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPE 69 (351)
T ss_dssp EECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGG
T ss_pred cCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCC
Confidence 3456999999999999999 599999999999999987643211 1134678999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCccc------ccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCCceE
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDL------RQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKL 487 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~------~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~~~~ 487 (945)
++++|++|+.||.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| .+++.+
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCT
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHh
Confidence 6999999999999999999886421 233467789999999999999 88 899999999999999 666543
Q ss_pred EEec-------------CCCCCEEEEEeeec-CCccEEEEEEcCCeEEEEEccCCCe--eEEecCCCCeEEEEEEcCCC-
Q 002264 488 FNFE-------------GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG- 550 (945)
Q Consensus 488 ~~~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~- 550 (945)
..+. .|...+.+++|+|. .++..+++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~ 227 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG 227 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSS
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCC
Confidence 3222 67888999999885 1257999999999998888776665 45666788899999999998
Q ss_pred ---CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE----ECCCcEEEEECCCCeeEEEe
Q 002264 551 ---SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV----GEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 551 ---~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~ 623 (945)
++|++++. |+.|++||++++........... ........+....+..+ .....+.+|+....+.+..+
T Consensus 228 ~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 228 RWYQLIATGCK----DGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CSSEEEEEEET----TSCEEEEEEEECC----------------------------------------CCSEEEEEEEEE
T ss_pred CcceEEEEEcC----CCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 78888885 89999999987655444333222 22223333333333333 34455666666666777777
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..|. ..|.+++|+|++++|++++.||.|++|++.++
T Consensus 303 ~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 303 DDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred eccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 6554 48999999999999999999999999999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-30 Score=286.06 Aligned_cols=252 Identities=15% Similarity=0.203 Sum_probs=209.5
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC--C
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~--g 418 (945)
-+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.... ...+.+|...|.+++|+++ +
T Consensus 8 ~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h~~~v~~~~~~~~~~~ 69 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFG 69 (379)
T ss_dssp EECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCGGGC
T ss_pred cCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCccee-----------------eeEecCCCCcEEEEEeCCCCCC
Confidence 35999999999999999 59999999999999997432211 1347789999999999987 9
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCC--ceEEEecCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGH 493 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~--~~~~~~~~~ 493 (945)
++|++|+.||.|++||+.+++.. ....+..|...|.+++|+|+ +. ++++++.|+.|++|| ..+ .....+.+|
T Consensus 70 ~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 146 (379)
T 3jrp_A 70 TILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 146 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred CEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence 99999999999999999987521 22257789999999999999 88 899999999999999 554 345677889
Q ss_pred CCCEEEEEeeecC-----------CccEEEEEEcCCeEEEEEccCCCee----EEecCCCCeEEEEEEcCC---CCEEEE
Q 002264 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD---GSRLFS 555 (945)
Q Consensus 494 ~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~---~~~l~~ 555 (945)
...|.+++|+|.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +++|++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 9999999998842 4689999999999999999876533 456678889999999999 889999
Q ss_pred EeecCCCCceEEEEeCCCCc---eeeEe--ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 556 CGTSKDGDSFLVEWNESEGT---IKRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
++. ++.|++||+.++. ....+ ..+.. .+.+++|+|++++|++++.||.|++|++..+.
T Consensus 227 ~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 227 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 885 8999999998864 12222 22433 78999999999999999999999999998544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=276.61 Aligned_cols=248 Identities=10% Similarity=-0.017 Sum_probs=209.9
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
..+|.+.|++++|+|++++|++|+.||.|++|++.++........+.+|...|.+++|+|+++. +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5579999999999999999999999999999999987632222345689999999999999873 478899999999999
Q ss_pred C-CCceEEEecC--CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC---------CCeeEEecCCCCeEEEEEEcCC
Q 002264 482 L-SGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---------MGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 482 ~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
. .......+.+ |...|.+++|++ +.++++++.|+.|++||+++ .+....+. +...+.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred eccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 7 8878889999 999999999987 47999999999999999987 55555554 6778999999998
Q ss_pred CCEEEEEeecCCCCceEEEEeCCC-Cce--eeEeccccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCC------ee
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV------NI 619 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~ 619 (945)
+ +++++. ++.|++||+++ +.. ......+. ..+.+++|+| +++++++++.||.|++|+++.. +.
T Consensus 162 ~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 162 R--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp E--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS-SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred c--EEEEeC----CCeEEEEECCccccccceeeecCCC-CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 8 777764 88999999988 543 22333333 3799999999 9999999999999999999887 77
Q ss_pred EEEeecCCC-------CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 620 LTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 620 ~~~~~~~~~-------~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 777776532 348999999999999999999999999999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=282.51 Aligned_cols=254 Identities=19% Similarity=0.296 Sum_probs=216.8
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i 477 (945)
.++.+|.+.|++++|+|++++||+|+.||.|++||+..+.. .....+.+|...|++++|+++ +. +|++|+.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v 81 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKV 81 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEE
Confidence 34788999999999999999999999999999999984321 223367889999999999987 77 89999999999
Q ss_pred EEEe-CCCc--eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcC----
Q 002264 478 KVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA---- 548 (945)
Q Consensus 478 ~vwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~---- 548 (945)
++|| .+++ .+..+..|...|.+++|+|..++.++++++.|+.|++||+.... ....+..+...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 9999 6776 77888899999999999886436899999999999999998874 3445667888999999999
Q ss_pred ---------CCCEEEEEeecCCCCceEEEEeCCCCc----eeeEeccccCcceEEEEEcCC---CCEEEEEECCCcEEEE
Q 002264 549 ---------DGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFW 612 (945)
Q Consensus 549 ---------~~~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iw 612 (945)
++..+++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +++|++++.||.|++|
T Consensus 162 ~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp --------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999885 8999999998764 4456677766 7999999999 8999999999999999
Q ss_pred ECCCCe---eEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 613 DMDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 613 d~~~~~---~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|+.++. .........+...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 999874 3344444445568999999999999999999999999999754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=275.42 Aligned_cols=209 Identities=16% Similarity=0.221 Sum_probs=178.4
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (945)
.+.+|.+.|++++|+|+++ +|++|+.||.|++|| .++ +.+..+.+|...|.+++|++..++.+|++++.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR--HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSS--EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCC--EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4678999999999999999 899999999999999 554 466778899999999999886456899999999999
Q ss_pred EEEEccCC---------CeeEEecCCCCeEEEEEEcCC--CCEEEEEeecCCCCceEEEEeCCCCceeeEec--------
Q 002264 521 KAWLYDTM---------GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-------- 581 (945)
Q Consensus 521 ~iwd~~~~---------~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~-------- 581 (945)
++||++.+ .....+..+...|.+++|+|+ +.++++++. ++.|++||+++++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN----DGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC----CCcEEEecCCChHHhcccccccccccc
Confidence 99999886 345677788889999999999 999999985 8999999999887654433
Q ss_pred -----cccCcceEEEEEcCC---CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC----CEEEEEEC
Q 002264 582 -----GFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG----NLLAVTTA 649 (945)
Q Consensus 582 -----~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g----~~l~~~~~ 649 (945)
.+. ..+.+++|+|+ +..+++++.++.+.+|+...+..........+...|.+++|+|++ ++|++++.
T Consensus 160 ~~~~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 160 SIPPANHL-QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SCCCSSCS-CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred ccccCCcc-cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 233 36889999997 899999999999988988888764444444556689999999998 89999999
Q ss_pred CCcEEEEECCCC
Q 002264 650 DNGFKILANAIG 661 (945)
Q Consensus 650 dg~i~iw~~~~~ 661 (945)
||.|++||+.++
T Consensus 239 dg~i~iwd~~~~ 250 (351)
T 3f3f_A 239 DGRIRIFKITEK 250 (351)
T ss_dssp TSCEEEEEEEEC
T ss_pred CCeEEEEeCCCC
Confidence 999999999755
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=283.67 Aligned_cols=233 Identities=16% Similarity=0.290 Sum_probs=207.5
Q ss_pred cCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd- 481 (945)
.+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 79999999999999999999987665 67899999999999 677 899999999999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCee---EEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
.+++.+..+.+|...|.+++|++ ..+++|+.||.|++||+.+.... ..+..+...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 88999999999999999999852 58999999999999999887765 566778889999998 7889999885
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++.|++||+.+++.+..+.+|.. .+.++.++ ++.+++|+.||.|++||+++++.+..+..+. ..|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe-
Confidence 89999999999999999998876 78888884 6899999999999999999999999887654 48999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=280.18 Aligned_cols=277 Identities=14% Similarity=0.184 Sum_probs=220.8
Q ss_pred ccccCCCccEEEEEEcCC---CCEEEEEECCCcEEEEEccC-CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC
Q 002264 400 SIFKDVPISVSRVAWSPD---GNYVGVAFTKHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~---g~~las~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~ 475 (945)
..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg 108 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDK 108 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTS
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCC
Confidence 347889999999999999 69999999999999999987 44331 25778999999999999999 899999999
Q ss_pred cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.|++|| .+++.+ .+.+|...|.+++|.+.+++.+|++++.||.|++||+++++....+..+. .+.++.+.+ ..++
T Consensus 109 ~v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~ 184 (368)
T 3mmy_A 109 TAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAV 184 (368)
T ss_dssp EEEEEETTTTEEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEE
T ss_pred cEEEEEcCCCCce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeE
Confidence 999999 555544 46779999999999777788999999999999999999988888877665 455666554 4666
Q ss_pred EEeecCCCCceEEEEeCCCCceee-EeccccCcceEEEEEcCCCCE----EEEEECCCcEEEEECCCC---eeEEEeecC
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNH----FLAVGEDSQIKFWDMDNV---NILTSTDAE 626 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~ 626 (945)
+++. ++.+.+|++....... ...........++++.++... +++++.||.|++|+++.. ..+..+..+
T Consensus 185 ~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 185 VATA----ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp EEEG----GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred EEeC----CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 6664 8899999998765433 233223334566666655544 999999999999999987 455556554
Q ss_pred CCC----------CCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceec
Q 002264 627 GGL----------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 627 ~~~----------~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
... ..|.+++|+|++++|++++.||.|++||+.++ ..+..+.++ ..++.+++|+|+|+++++
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-----~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQL-----DQPISACCFNHNGNIFAY 332 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCC-----SSCEEEEEECTTSSCEEE
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCC-----CCCceEEEECCCCCeEEE
Confidence 321 15999999999999999999999999999987 555555544 346899999999988853
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=282.63 Aligned_cols=275 Identities=14% Similarity=0.157 Sum_probs=225.4
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEEccCCcc-cccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CC
Q 002264 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 408 ~V~~i~~s~~g~~la-s~~~dg~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
....++++|+...++ +++.||.|+||++..... ......+.+|.+.|.+++|+| ++. +|++|+.||+|++|| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 445688998876544 578899999999965432 233446779999999999999 888 899999999999999 66
Q ss_pred C-------ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe--cCCCCeEEEEEEcCCCCEEE
Q 002264 484 G-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 484 ~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~ 554 (945)
+ +.+..+.+|...|.+++|+|.+ ..+|++++.||.|++||+++++....+ ..+...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 5 5678899999999999998853 269999999999999999999888888 77888999999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEe-ccccCcceEEEEEcCCCCEEEEE---ECCCcEEEEECCCCee-EEEeecCCCC
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAV---GEDSQIKFWDMDNVNI-LTSTDAEGGL 629 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 629 (945)
+++. ++.|++||+++++.+..+ .+|....+..+.|+|++.++++| +.|+.|++||++++.. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9985 899999999999999888 67776558889999999999998 6899999999998764 333332 233
Q ss_pred CCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 630 PNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
..+.+++|+|+++++++++ .||.|++|++.++...+..+..+. +..++.+++|+|++..++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCG
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEecccccce
Confidence 4799999999999997554 699999999998754344443322 345789999999987663
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=280.52 Aligned_cols=298 Identities=12% Similarity=0.060 Sum_probs=231.1
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCC---ccccccccccccccc----------------------------
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD---RLVSKPFKIWDMAAC---------------------------- 393 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 393 (945)
.++.|++|+|+|+ +|++++ ++.|++||+.+|+ .+. .|.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~~-~~~i~v~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAII-KNCILSFKYQSPNHWEFAG-----KWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEEE-TTEEEEEEEETTTEEEEEE-----EEECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEEe-CCeEEEEECCCCCcceeee-----ecCCccccccccccccchhhccccccccccccccc
Confidence 3789999999999 466654 7899999999988 332 1211000
Q ss_pred ------------CcccccccccCCCccEEEEEEcCCCCEE-EEEECCCcEEEEEcc--CCcccccceeeccccccEEEEE
Q 002264 394 ------------SLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLA 458 (945)
Q Consensus 394 ------------~~~~~~~~~~~h~~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~ 458 (945)
..........+|.+.|.+++|+|+|++| ++|+.||.|++||+. +++.+..+. ...|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000011123677789999999999996 889999999999999 776665321 125778999999
Q ss_pred EecCCCeeEEEEEeCCCcEEEEe-CCCceE----EEecCCCCCEEEEEeeec-CCccEEEEEEcCCeEEEEEccCCCeeE
Q 002264 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----FNFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (945)
Q Consensus 459 ~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~----~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 532 (945)
|+|+++ +|++|+.|+.|++|+ .++... ..+.+|...|.+++|+|+ ..+.+|++++.|+.|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 665543 377889999999999985 126899999999999999999888777
Q ss_pred E-ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc------------------------Ccc
Q 002264 533 D-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------------------KKS 587 (945)
Q Consensus 533 ~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~------------------------~~~ 587 (945)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999985 8999999999999888776321 235
Q ss_pred eEEEEEcCCCCEEEEEE-CCCcEEEEEC--CCC---eeEEEeecCCCCCCccEEEEcCCCCEEEEEEC------CCcEEE
Q 002264 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDM--DNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKI 655 (945)
Q Consensus 588 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~------dg~i~i 655 (945)
+..++|+|+++++++++ .|+.|++|++ .++ ..+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999999 8999999999 555 666666655 37999999996544443332 455888
Q ss_pred EECCC
Q 002264 656 LANAI 660 (945)
Q Consensus 656 w~~~~ 660 (945)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=248.88 Aligned_cols=294 Identities=14% Similarity=0.129 Sum_probs=207.2
Q ss_pred cEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCC---ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 453 AVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 453 ~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.+.++-|-. ..+.+.+++++ ...|++|+ .++ ++++++..|..+|..+.+.|+.-+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 355666644 34445677777 67899999 888 7899999999999999998864332222211
Q ss_pred CCeeEEecCCCCeEEEEEEcCC----CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE
Q 002264 528 MGSRVDYDAPGHWCTTMLYSAD----GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (945)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.++
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss 151 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSS 151 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEE
T ss_pred -------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEec
Confidence 123457899999999 888888763 36666432 33333332
Q ss_pred E--CCCcEEEEEC-CCCeeEEEeecCCCCCCccEEEEcC---CCCEEEEEECCCcEEEEECCCCccccccccCCcccccc
Q 002264 604 G--EDSQIKFWDM-DNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 604 ~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
+ .|+.|++|++ .+++.+..+..+.. .+..++|+| ++..|++++.|++|+|||+.++ +.++++.++..
T Consensus 152 ~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~---- 224 (356)
T 2w18_A 152 GTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS---- 224 (356)
T ss_dssp SSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-----
T ss_pred ccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc----
Confidence 2 4888888888 44777777777665 788999999 7899999999999999999988 44444332110
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEE
Q 002264 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l 837 (945)
+...+.+++|+|+|+.+++++.+..
T Consensus 225 -----~v~~v~~vafSpdG~~lvs~s~~~~-------------------------------------------------- 249 (356)
T 2w18_A 225 -----YQASVCHKAYSEMGLLFIVLSHPCA-------------------------------------------------- 249 (356)
T ss_dssp -------CCCEEEEEEETTEEEEEEC------------------------------------------------------
T ss_pred -----ceeeeEEEEECCCCCEEEEeccCCC--------------------------------------------------
Confidence 2235678889999987777654311
Q ss_pred eecCCCceEEecC-CCeEEEEeccCceEEEEe-----cCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe
Q 002264 838 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF-----MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (945)
Q Consensus 838 ~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~-----~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l 911 (945)
...+++|+ |++|++||..+++.+.++ .+|...+.+..+ ++.++|+|+.||+|+|||+.+|+++.++
T Consensus 250 -----~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 250 -----KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp -------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred -----cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEe
Confidence 11467888 788999999999887765 467666544443 3679999999999999999999999999
Q ss_pred cCCCccee-EEEecCCcceeeeecCCceEEEEecC
Q 002264 912 KGHQKRIT-GLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 912 ~~h~~~V~-~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
.+|...+. .++|+|||++|+||+.|++|+|||+.
T Consensus 322 ~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 322 PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 99988766 58999999999999999999999973
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-28 Score=266.14 Aligned_cols=274 Identities=9% Similarity=0.047 Sum_probs=221.5
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE-EEEECCCcEEEEEcc
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA 436 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~ 436 (945)
+++++++.|+.|++||+.+++.+. .+.+| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~-------------------~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA-------------------TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-------------------EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE-------------------EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 578999999999999999887653 24445 458999999999987 566689999999999
Q ss_pred CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEE-EEE
Q 002264 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FST 514 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 514 (945)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence 987665 344343 8999999999994 345666789999999 777777777654 5689999977 45655 788
Q ss_pred EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEc
Q 002264 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (945)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 594 (945)
+.++.|++||+.+++....+..+. .+.+++|+|+++.+++++. .++.|++||+.+++....+..+. .+..++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 889999999999888777766554 5689999999998865543 37899999999998887776432 57889999
Q ss_pred CCCCEEEEEE---CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE-EEEECCCcEEEEECCCCcccccccc
Q 002264 595 TTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (945)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+|+++ ++++.|+.|++||+.++ +....+.
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~ 283 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMA 283 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEE
Confidence 9999999988 68999999999999988887643 57899999999987 56678999999999987 4444443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-30 Score=305.12 Aligned_cols=252 Identities=15% Similarity=0.196 Sum_probs=209.9
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC--C
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~--g 418 (945)
.+|.+.|++++|+|+|++ |++|+.||+|+|||+.++.... ...+.+|.+.|.+++|+|+ +
T Consensus 6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSC
T ss_pred ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCC
Confidence 459999999999999995 9999999999999987433211 1347789999999999998 9
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEEEEe-CCC--ceEEEecCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGH 493 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~vwd-~~~--~~~~~~~~~ 493 (945)
++|++|+.||.|++||+.+++. .....+.+|...|++++|+|+ +. ++++|+.||.|++|| ..+ .....+.+|
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 9999999999999999998752 122367789999999999999 88 899999999999999 544 345667889
Q ss_pred CCCEEEEEeeecC-----------CccEEEEEEcCCeEEEEEccCCC----eeEEecCCCCeEEEEEEcCC---CCEEEE
Q 002264 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSAD---GSRLFS 555 (945)
Q Consensus 494 ~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~---~~~l~~ 555 (945)
...|.+++|+|.. ++.++++|+.||.|++||++++. ....+..|...|.+++|+|+ ++++++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 9999999998841 46799999999999999998874 34466778889999999999 899999
Q ss_pred EeecCCCCceEEEEeCCCCc-----eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 556 CGTSKDGDSFLVEWNESEGT-----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
++. ++.|++||+.++. .......+.. .+.+++|+|+++++++++.||.|++|++.++.
T Consensus 225 ~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred Eec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 886 8999999998864 2222233444 78899999999999999999999999998643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=302.11 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=213.6
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC--CCeeEEEEEeCCCcEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~~l~s~s~d~~i~ 478 (945)
++.+|.+.|++++|+|+|++|++|+.||.|++||+.++.. .....+.+|.++|++++|+|+ ++ +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 4789999999999999999999999999999999985322 233367899999999999988 77 899999999999
Q ss_pred EEe-CCCc--eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcC-----
Q 002264 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (945)
Q Consensus 479 vwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 548 (945)
+|| .+++ .+..+.+|...|.+++|+|..++..+++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67888899999999999986436899999999999999998773 3456677888999999999
Q ss_pred --------CCCEEEEEeecCCCCceEEEEeCCCC----ceeeEeccccCcceEEEEEcCC---CCEEEEEECCCcEEEEE
Q 002264 549 --------DGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 549 --------~~~~l~~~~~~~d~~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (945)
++..+++++. ++.|++||++++ .....+.+|.. .+.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999885 899999999877 55667777776 8999999999 89999999999999999
Q ss_pred CCCCeeE---EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 614 MDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 614 ~~~~~~~---~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.++... .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 22223334568999999999999999999999999999865
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-27 Score=267.07 Aligned_cols=371 Identities=13% Similarity=0.157 Sum_probs=272.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE---EcCCCC
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA---WSPDGN 419 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~---~s~~g~ 419 (945)
....|..+.|+|....++..+.......++... ....+..++ |+|++.
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~ 76 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE 76 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence 445788999999765434433222222332211 223455666 666666
Q ss_pred EEEEE--------------ECCCcEEEEEcc--CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 420 YVGVA--------------FTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 420 ~las~--------------~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
.++.. +.++.+.+|.++ ++. ......+..+ ..+.+++|+|++. ++++++.|+.|++|| .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~ 152 (433)
T 3bws_A 77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN 152 (433)
T ss_dssp EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence 55443 233333455443 332 2222234333 4466999999665 788888899999999 7
Q ss_pred CCceEE-----EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 483 SGRKLF-----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 483 ~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
+++.+. .+.+|...|.+++|++ ++.++++++.|+.|++||+++++....+..+...+.+++|+|+++.+++++
T Consensus 153 ~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 153 SGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp TCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred CCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 788776 4557888999999965 568999999999999999999888888888888999999999999987665
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE--------CCCcEEEEECCCCeeEEEeecCCCC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--------EDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
. .++.|++||+.+++.+..+..+. .+..++|+|+++.+++++ .||.|++||+.+++.+..+....
T Consensus 231 ~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-- 303 (433)
T 3bws_A 231 W---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG-- 303 (433)
T ss_dssp T---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--
T ss_pred c---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--
Confidence 3 37899999999999888877643 488899999999999988 48899999999998877764332
Q ss_pred CCccEEEEcCCCCEE-EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCC
Q 002264 630 PNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (945)
.+.+++|+|+++.+ ++++.|+.|++||+.++. ....+
T Consensus 304 -~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-~~~~~---------------------------------------- 341 (433)
T 3bws_A 304 -NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-VQKSI---------------------------------------- 341 (433)
T ss_dssp -CEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-EEEEE----------------------------------------
T ss_pred -CcceEEECCCCCEEEEEecCCCEEEEEECCCCc-EEEEe----------------------------------------
Confidence 67899999999755 566889999999997652 11100
Q ss_pred CCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeE
Q 002264 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (945)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i 788 (945)
. +...+.+++|+|+|+.+++++.+..
T Consensus 342 -----------------------------------------------~------~~~~~~~~~~s~dg~~l~~~~~~~~- 367 (433)
T 3bws_A 342 -----------------------------------------------P------VFDKPNTIALSPDGKYLYVSCRGPN- 367 (433)
T ss_dssp -----------------------------------------------E------CSSSEEEEEECTTSSEEEEEECCCC-
T ss_pred -----------------------------------------------c------CCCCCCeEEEcCCCCEEEEEecCCC-
Confidence 0 2345678999999998887765410
Q ss_pred EEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEE
Q 002264 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTT 867 (945)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~ 867 (945)
. .+..++++|+ ||.|++||+.+++.+..
T Consensus 368 --------------------------------------------~-------~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 368 --------------------------------------------H-------PTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp --------------------------------------------C-------TTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred --------------------------------------------c-------cccccccccccceEEEEEECCCCcEEEE
Confidence 0 0334567777 89999999999999888
Q ss_pred ecCCCCCeeEEEeecCCCceEEEeec-CceEEEEeccc
Q 002264 868 FMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRV 904 (945)
Q Consensus 868 ~~~h~~~i~~l~~s~~~~~~lasg~~-dg~v~vwd~~~ 904 (945)
+.. ...+.+++|+| ++++|++++. |+.|++|++..
T Consensus 397 ~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 397 WEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 886 45799999999 8888887764 99999999864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=274.94 Aligned_cols=285 Identities=11% Similarity=0.082 Sum_probs=226.1
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc---eeeEeccccC------------------------------
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRK------------------------------ 585 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~---~~~~~~~~~~------------------------------ 585 (945)
.++.+++|+++|++++++. ++.|++||+.+++ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678899999999777664 7789999999998 5555543211
Q ss_pred -----------------------cceEEEEEcCCCCEE-EEEECCCcEEEEECC--CCeeEEEeecCCCCCCccEEEEcC
Q 002264 586 -----------------------KSNGVVQFDTTQNHF-LAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 586 -----------------------~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
..+.+++|+|++++| ++++.||.|++||+. ++..+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 148899999999996 788899999999999 888888887555555899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCC
Q 002264 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (945)
++++|++++.+|.|++|++.++.. ...
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~-~~~---------------------------------------------------- 186 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPE-EKF---------------------------------------------------- 186 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCC-SSC----------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccc-ccc----------------------------------------------------
Confidence 999999999999999999876521 000
Q ss_pred CCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC---CCeEEEeeecCeEEEEeecCC
Q 002264 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS---AVGLLALGSNGVQKLWKWHRN 796 (945)
Q Consensus 720 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~l~~~~~dg~i~lw~~~~~ 796 (945)
.+ . .+ .+|...|.+++|+|+ +++|++++.|+.|++|++..
T Consensus 187 -----------------~~-----------~-----~~---~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~- 229 (450)
T 2vdu_B 187 -----------------TQ-----------E-----PI---LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ- 229 (450)
T ss_dssp -----------------CC-----------C-----CS---EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-
T ss_pred -----------------cc-----------e-----ee---ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-
Confidence 00 0 00 117778999999999 99999999999999998643
Q ss_pred CCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCC----
Q 002264 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP---- 871 (945)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h---- 871 (945)
+..+...+.+ |...|.+++|+ |+++|++++ |++|++||+.+++++..+..+
T Consensus 230 ---------------------~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 285 (450)
T 2vdu_B 230 ---------------------CFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIK 285 (450)
T ss_dssp ---------------------TTCEEEECCC--CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHG
T ss_pred ---------------------CceeeeeecC--CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhh
Confidence 2222222334 88999999999 999999999 899999999999988887632
Q ss_pred ---------------------CCCeeEEEeecCCCceEEEee-cCceEEEEec--ccc---eEEEEecCCCcceeEEEec
Q 002264 872 ---------------------PPASTFLAFHPQDNNIIAIGT-EDSTIHIYNV--RVD---EVKSKLKGHQKRITGLAFS 924 (945)
Q Consensus 872 ---------------------~~~i~~l~~s~~~~~~lasg~-~dg~v~vwd~--~~~---~~~~~l~~h~~~V~~l~~s 924 (945)
...|.+++|+| ++++|++++ .|+.|+||++ .++ +.+..+.+| +.|.+++|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~ 363 (450)
T 2vdu_B 286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAH 363 (450)
T ss_dssp GGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEE
T ss_pred hhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEec
Confidence 35699999999 899999998 8999999999 665 778888888 889999999
Q ss_pred CCcceeeeecC------CceEEEEec
Q 002264 925 TSLNILVSSGA------DAQVTLCVE 944 (945)
Q Consensus 925 ~dg~~l~s~~~------Dg~i~vWdl 944 (945)
|++.++++++. +..|.+|.+
T Consensus 364 ~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 364 NDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp TTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CCcEEEEEecccCCCCCCcceEEEEE
Confidence 97655554443 556888875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-28 Score=271.08 Aligned_cols=302 Identities=8% Similarity=0.056 Sum_probs=243.4
Q ss_pred cccCCCCC--cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccC
Q 002264 327 TWSLDDLP--RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (945)
Q Consensus 327 ~~~~~~~~--~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (945)
+|.++... ......+.+...+.+++|+|++. ++++++.++.|++||+.+++...... ...+.+
T Consensus 103 l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~ 167 (433)
T 3bws_A 103 LIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKK 167 (433)
T ss_dssp EEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHT
T ss_pred EEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccc
Confidence 56555422 24555566666788999999554 78888889999999999887653211 113567
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
|...|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++|| .+
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCC
Confidence 99999999999999999999999999999999887665 56678999999999999994 346666899999999 78
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEE--------cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
++.+..+..+ ..+.+++|+| +++.+++++ .||.|++||+.+++....+ .+...+.+++|+|+++.+++
T Consensus 244 ~~~~~~~~~~-~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTDKI-GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECCCC-SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred CcEEEEecCC-CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence 8887777654 4588999876 557888887 5889999999887665544 33346889999999987766
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC---------------CCcEEEEECCCCeeE
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---------------DSQIKFWDMDNVNIL 620 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~ 620 (945)
++. .++.|++||+.+++....+.. . ..+..++|+|+++++++++. ||.|++||+.+++.+
T Consensus 320 ~~~---~~~~v~v~d~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 320 SDM---CCSKIEVYDLKEKKVQKSIPV-F-DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EET---TTTEEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred Eec---CCCEEEEEECCCCcEEEEecC-C-CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 543 488999999999988887763 2 36889999999999998886 579999999999998
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~ 659 (945)
..+..+ ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus 395 ~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 888763 26899999999999998875 9999999985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=267.30 Aligned_cols=277 Identities=13% Similarity=0.160 Sum_probs=212.7
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~ 420 (945)
-.|.+.|+|++|+|||+ +||+|+.+| ++||++.+++.... .+...+..++++++++.
T Consensus 16 ~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ---CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSE
T ss_pred ccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCE
Confidence 34899999999999999 589888665 78999887655421 12225788899999888
Q ss_pred EE-EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC-ceEEEecCCCCCE
Q 002264 421 VG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPV 497 (945)
Q Consensus 421 la-s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~-~~~~~~~~~~~~v 497 (945)
++ +|+.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++|| .++ +.+..+.. +.
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CC
Confidence 84 57778999999999987765 343 67799999998764 33333 88999999 665 55555543 33
Q ss_pred EEEEeeecCCccEEEE--EEcCCeEEEEEccCCC----------------eeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 498 YSICPHHKENIQFIFS--TAIDGKIKAWLYDTMG----------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
..+++++ .++++ |+.||.|++||+.++. ....+..|...|.+++|+|+|++|++++.
T Consensus 141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~- 215 (355)
T 3vu4_A 141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ- 215 (355)
T ss_dssp EEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-
Confidence 4445544 34555 6899999999998765 25678889999999999999999999986
Q ss_pred CCCCce-EEEEeCCCCceeeEec-c-ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE--EEe-----------
Q 002264 560 KDGDSF-LVEWNESEGTIKRTYA-G-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL--TST----------- 623 (945)
Q Consensus 560 ~d~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~----------- 623 (945)
|+. |++||+++++.+..+. + |.. .+.+++|+|++++|++++.|+.|++||+..+... ..+
T Consensus 216 ---d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 291 (355)
T 3vu4_A 216 ---DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQS 291 (355)
T ss_dssp ---TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCC
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccc
Confidence 898 9999999999999998 5 554 8999999999999999999999999999765311 111
Q ss_pred -------ecC-CCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 624 -------DAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 624 -------~~~-~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
... ........++|+++|+.+++++.||.+++|++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 292 EWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 011 11123477999999999999999999999998654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=274.38 Aligned_cols=265 Identities=14% Similarity=0.246 Sum_probs=214.1
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
......|.+.|++++|+|++..+||+|+.||.|+|||+.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 45667799999999999985557999999999999999763111000 000001134678999999999999
Q ss_pred CCC-EEEEEECCCcEEEEEccCCccc----ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC---ceE
Q 002264 417 DGN-YVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKL 487 (945)
Q Consensus 417 ~g~-~las~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~---~~~ 487 (945)
++. +|++|+.||.|++|++.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999874331 223356789999999999995443 899999999999999 555 567
Q ss_pred EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEecCCCCeEEEEEEcCCCCE-EEEEeecCCCCce
Q 002264 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSF 565 (945)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~~d~~~~ 565 (945)
..+..|...|++++|+|.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++. +++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 7888999999999998853 24799999999999999998 4567778888999999999999964 666664 899
Q ss_pred EEEEeCCC--------------CceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 002264 566 LVEWNESE--------------GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 566 i~iwd~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (945)
|++||+.. .+.+..+.+|.. .+..++|+|++. ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356666777765 799999999998 8999999999999998753
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=270.54 Aligned_cols=309 Identities=14% Similarity=0.203 Sum_probs=233.2
Q ss_pred CCcEEEEEEeCCCC---------eEEEEEeC----cCcEEEEEcCCCCccccccccccccc--------ccCcccccccc
Q 002264 344 GSTVISMDFHPSHQ---------TLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMA--------ACSLPFQASIF 402 (945)
Q Consensus 344 ~~~V~~v~fsp~g~---------~llasgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 402 (945)
.-+..++.|.|+.. ..+++|+. ...|.++++.-...........++.. .....+.....
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 124 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK 124 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence 34678899998752 24677754 35677776541000000000001000 01111222345
Q ss_pred cCCCccEEEEEEcCC-CCEEEEEECCCcEEEEEccCC-------cccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 403 KDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~-g~~las~~~dg~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
.+|.+.|++++|+|+ +.+||+|+.||.|++|++.+. ........+.+|...|++++|+|++.. +|++|+.|
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~d 203 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASDD 203 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECTT
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeCC
Confidence 679999999999997 789999999999999999862 112333467899999999999999876 78999999
Q ss_pred CcEEEEe-CCCce-------EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC---CeeEEecCCCCeEEE
Q 002264 475 KLIKVWE-LSGRK-------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTT 543 (945)
Q Consensus 475 ~~i~vwd-~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~ 543 (945)
|.|++|| ..+.. ...+.+|...|.+++|+|. ++.+|++++.||.|++||+++. .....+..+...|++
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 9999999 44221 4567789999999999885 3479999999999999999987 456677788889999
Q ss_pred EEEcCCCCE-EEEEeecCCCCceEEEEeCCC-CceeeEeccccCcceEEEEEcCCCC-EEEEEECCCcEEEEECCC----
Q 002264 544 MLYSADGSR-LFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN---- 616 (945)
Q Consensus 544 ~~~s~~~~~-l~~~~~~~d~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~---- 616 (945)
++|+|++.. +++++. ++.|++||+++ ...+..+..|.. .+.+++|+|++. .+++++.||.|++||+..
T Consensus 283 i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 283 LSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred EEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 999999984 667664 89999999998 567788888766 899999999985 688999999999999987
Q ss_pred ----------CeeEEEeecCCCCCCccEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 002264 617 ----------VNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (945)
Q Consensus 617 ----------~~~~~~~~~~~~~~~v~~v~~sp~g~-~l~~~~~dg~i~iw~~~~~ 661 (945)
...+..+..+ ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2445555444 44899999999999 9999999999999999754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=260.63 Aligned_cols=238 Identities=10% Similarity=0.161 Sum_probs=187.3
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
..+|...|.+++|||||++||+|+.++ +++|++++++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998775 7899998765432 1 22235888999998884 446788889999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEEEE-ee
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSC-GT 558 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~ 558 (945)
.+++.+..+. +...|.++++++ + .++++ .|+.|++||+.+. +....+.. ....+++++ ..++++ +.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 8888888887 667899999865 2 34443 4889999999887 54444433 445566777 666665 32
Q ss_pred cCCCCceEEEEeCCCCc----------------eeeEeccccCcceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeeEE
Q 002264 559 SKDGDSFLVEWNESEGT----------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILT 621 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~ 621 (945)
.++.|++||+.++. .+..+.+|.. .+.+++|+|++++|++|+.||+ |++||+.+++++.
T Consensus 157 ---~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 157 ---NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp ---CTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred ---cCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 48899999999865 2677888877 8999999999999999999998 9999999999999
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+....|...|.+++|+|+|++|++++.|++|++||+..+
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 8873223458999999999999999999999999999765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-26 Score=255.13 Aligned_cols=332 Identities=9% Similarity=0.072 Sum_probs=252.0
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEE-EEEEcCCeEEEEEccCCCeeEEecCCCCeEEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 544 (945)
++++++.|+.|++|| .+++.+..+..|. .+.+++|++ +++++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788999999999999 8888888888765 489999977 55655 677799999999999888877776655 79999
Q ss_pred EEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEE-EEEECCCcEEEEECCCCeeEEEe
Q 002264 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 623 (945)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999877663 36899999999999888877654 57889999999988 56778999999999999998888
Q ss_pred ecCCCCCCccEEEEcCCCCEE-EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~ 702 (945)
..+. .+.+++|+|+|+.+ ++++.++.|++||+.++. ....+
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~---------------------------------- 196 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTV---------------------------------- 196 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE----------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEE----------------------------------
Confidence 7643 56999999999988 566778999999997652 11100
Q ss_pred ccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEe
Q 002264 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (945)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 782 (945)
. +...+.+++|+|+|++++++
T Consensus 197 -----------------------------------------------------~------~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 197 -----------------------------------------------------K------VEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp -----------------------------------------------------E------CSSEEEEEEECTTSSEEEEE
T ss_pred -----------------------------------------------------e------cCCCccceEECCCCCEEEEE
Confidence 0 23356788999999999888
Q ss_pred e---ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceE-EecC-CCeEEEE
Q 002264 783 G---SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV-MSAT-GGKISLF 857 (945)
Q Consensus 783 ~---~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~l-a~~s-d~~i~iw 857 (945)
+ .++.|++||+.. ++.+.. +. ....+.+++|+|||+++ ++++ ++.|++|
T Consensus 218 ~~~~~~~~v~~~d~~~----------------------~~~~~~-~~---~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGT----------------------NKITAR-IP---VGPDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EECSSCCEEEEEETTT----------------------TEEEEE-EE---CCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ecCcCCCcEEEEECCC----------------------CeEEEE-Ee---cCCCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 8 589999997532 221111 22 12357899999999977 4555 8899999
Q ss_pred eccCceEEEEecCCCCCee---EEE------------eecCCC----------ceEEEeecCceEEEEecccceEEEEec
Q 002264 858 NMMTFKVMTTFMSPPPAST---FLA------------FHPQDN----------NIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (945)
Q Consensus 858 d~~~~~~~~~~~~h~~~i~---~l~------------~s~~~~----------~~lasg~~dg~v~vwd~~~~~~~~~l~ 912 (945)
|+.+++.+..+..|..+.. .+. |+. +. ..+...+.|..+++|++.+|...
T Consensus 272 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~-~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~---- 346 (391)
T 1l0q_A 272 DTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKS-NITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS---- 346 (391)
T ss_dssp ETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEE-SCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----
T ss_pred ECCCCcEEEEEECCcCCCccceeeeccccccccccccccc-ccccccccccceEEEEeCCCCceEEEEECCCCccc----
Confidence 9999999988877655421 122 322 11 34666677889999999888642
Q ss_pred CCCcceeEEEecCCcceeeee---cCCc
Q 002264 913 GHQKRITGLAFSTSLNILVSS---GADA 937 (945)
Q Consensus 913 ~h~~~V~~l~~s~dg~~l~s~---~~Dg 937 (945)
.+..+ ...|+++|.|.++. +.||
T Consensus 347 ~~~~~--~~~~~~~g~y~~~~~~~~~~g 372 (391)
T 1l0q_A 347 KKQNP--THTYSETGIYTVRLTVSNSNG 372 (391)
T ss_dssp CSSSC--EECCSSCEEEEEEEEEEETTE
T ss_pred CcCCC--eEEeCCCceEEEEEEEECCCC
Confidence 22232 36899999988764 3455
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=265.80 Aligned_cols=303 Identities=12% Similarity=0.090 Sum_probs=199.2
Q ss_pred CCcEEEEEE---eCCCCeEEEEEeCcCcEEEEEcCCCCccccc-----ccccccccccC-----cccccccccCCCccEE
Q 002264 344 GSTVISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVSK-----PFKIWDMAACS-----LPFQASIFKDVPISVS 410 (945)
Q Consensus 344 ~~~V~~v~f---sp~g~~llasgs~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~~h~~~V~ 410 (945)
+....++.| +|++..++++|. ++.|.+|+.......... ....|...... ..........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 346667777 455555666665 888999986433221110 01111110000 0000111234445555
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccc--cceeeccccccEEEEEEec--------CCCeeEEEEEeCCCcEEEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAY--------PNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~--------~~~~~~l~s~s~d~~i~vw 480 (945)
...+++++.+||+|+.|++|+|||+++++... ....+.+|.+.|.+++|+| |++ +|+|||.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 55666778899999999999999999876532 2335789999999999998 777 89999999999999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-------------------------
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY------------------------- 534 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------- 534 (945)
| .++.++..+.+|...|.+++|+|.+ +.+|++++.||+|++||+.++......
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 9 7788888888899999999999852 358999999999999999876543321
Q ss_pred cCCCCeEEEEEEc-CCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEE------------------EEEcC
Q 002264 535 DAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV------------------VQFDT 595 (945)
Q Consensus 535 ~~~~~~i~~~~~s-~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~~~ 595 (945)
..+...+.++.|+ ++++.+++++. ++.+++||+..+.....+..+.. .+.. ..+++
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 2344567788876 79999999885 89999999988776655544332 1111 22333
Q ss_pred -CCC-EEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 596 -TQN-HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 596 -~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.+. ++++|+.||.|++||+.+++.......+.. +|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 333 556677899999999999988877766544 899999999999999998765 666655
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=261.30 Aligned_cols=274 Identities=8% Similarity=0.061 Sum_probs=203.0
Q ss_pred EecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC
Q 002264 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (945)
Q Consensus 459 ~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (945)
+.+++. ++++|+.||+|++|| .+++.+..+. ...|.++.++|. +++++.|++|++|+...
T Consensus 44 ~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~---------- 104 (343)
T 3lrv_A 44 MYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN---------- 104 (343)
T ss_dssp SSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT----------
T ss_pred hcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC----------
Confidence 345666 899999999999999 8888887776 456777777663 99999999999998642
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC--CCCEEEEEECCCcEEEEECC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 615 (945)
.+.+||..+++.+..+...+...+.+++|+| +++++++++.||.|++||++
T Consensus 105 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~ 157 (343)
T 3lrv_A 105 ---------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE 157 (343)
T ss_dssp ---------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS
T ss_pred ---------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC
Confidence 3567888888866666533334799999999 99999999999999999999
Q ss_pred CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
+++.......+ +...|.+++|+|+|.+|++|+.||.|++||+.++......+.
T Consensus 158 ~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-------------------------- 210 (343)
T 3lrv_A 158 DDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-------------------------- 210 (343)
T ss_dssp SSCEEEEECCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC--------------------------
T ss_pred CCcEEEEEecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe--------------------------
Confidence 99987665443 234699999999999999999999999999976521100000
Q ss_pred CCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC
Q 002264 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (945)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 775 (945)
.
T Consensus 211 ------------------------------------------------------------------~------------- 211 (343)
T 3lrv_A 211 ------------------------------------------------------------------V------------- 211 (343)
T ss_dssp ------------------------------------------------------------------C-------------
T ss_pred ------------------------------------------------------------------c-------------
Confidence 0
Q ss_pred CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEE
Q 002264 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKIS 855 (945)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~ 855 (945)
.|...|++++|+|+|.+|+++++++|+
T Consensus 212 -----------------------------------------------------~h~~~v~~l~fs~~g~~l~s~~~~~v~ 238 (343)
T 3lrv_A 212 -----------------------------------------------------DEEAKIKEVKFADNGYWMVVECDQTVV 238 (343)
T ss_dssp -----------------------------------------------------CTTSCEEEEEECTTSSEEEEEESSBEE
T ss_pred -----------------------------------------------------cCCCCEEEEEEeCCCCEEEEEeCCeEE
Confidence 045566667777777777776655777
Q ss_pred EEeccCceEEEEecC---CCCCe--eEEEeecCCCceEEEeec-CceEEEEecccceEEEEecCCCcceeEEEecC---C
Q 002264 856 LFNMMTFKVMTTFMS---PPPAS--TFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQKRITGLAFST---S 926 (945)
Q Consensus 856 iwd~~~~~~~~~~~~---h~~~i--~~l~~s~~~~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~---d 926 (945)
+||+.+++....+.. |...+ .+++|+| ++++|++++. |+.|+||++.++...... .++..++|++ +
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred EEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 777766655444433 33334 4699999 8999999998 999999999765433222 5677888888 8
Q ss_pred cceeeeecCCceEEEE
Q 002264 927 LNILVSSGADAQVTLC 942 (945)
Q Consensus 927 g~~l~s~~~Dg~i~vW 942 (945)
+..+++++.||.++++
T Consensus 314 ~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCEEEEEEETTEEEEE
T ss_pred cceeEEEecCCceEEE
Confidence 8888888888888776
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=262.46 Aligned_cols=267 Identities=8% Similarity=0.066 Sum_probs=210.3
Q ss_pred EEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcE
Q 002264 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (945)
Q Consensus 351 ~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i 430 (945)
.+.+++. ++++|+.||+|++||+.+++.+.. +. ...|.++.|+|+ +++|+.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3445676 699999999999999999876632 11 356778888888 9999999999
Q ss_pred EEEEccC---------CcccccceeeccccccEEEEEEec--CCCeeEEEEEeCCCcEEEEe-CCCceEEEec-CCCCCE
Q 002264 431 QLYSYAG---------SNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPV 497 (945)
Q Consensus 431 ~vwd~~~---------~~~~~~~~~~~~h~~~v~~l~~s~--~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~-~~~~~v 497 (945)
++|+... ++.++. ...+|.+.|.+++|+| +++ ++++|+.|++|++|| .+++.+.... .|...+
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 9997663 322221 1225778999999999 999 899999999999999 7777766654 455689
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCee-EEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.+++|+| ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999987 6689999999999999999998887 67777 889999999999999999998 4499999999987
Q ss_pred eeeEeccccC--cce--EEEEEcCCCCEEEEEEC-CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC---CCCEEEEE
Q 002264 576 IKRTYAGFRK--KSN--GVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVT 647 (945)
Q Consensus 576 ~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~l~~~ 647 (945)
....+..+.. ..+ .+++|+|++++|++++. |+.|++|++......... .++..++|++ ++..++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 7665543211 122 36999999999999998 999999999765443332 2567788888 88999999
Q ss_pred ECCCcEEEEECC
Q 002264 648 TADNGFKILANA 659 (945)
Q Consensus 648 ~~dg~i~iw~~~ 659 (945)
+.||.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999988654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=233.08 Aligned_cols=287 Identities=13% Similarity=0.067 Sum_probs=191.5
Q ss_pred cEEEEEEeCCC-Ce-EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 346 TVISMDFHPSH-QT-LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 346 ~V~~v~fsp~g-~~-llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+.++.|-.-| +. .+++++ ...|++|+..++..-. ..+.+++|+.+|..+.++||..-|++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWE----------------KLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEE----------------EEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccce----------------eeEEEeccCceeEEEEEcCcccceee
Confidence 46666665443 32 244554 7899999999873211 11335667777777777775433322
Q ss_pred EE-CCCcE-EEEEcc--CC-cccccceeeccccccEEEEEEecCCCeeEEEEEe--CCCcEEEEe--CCCceEEEecCCC
Q 002264 424 AF-TKHLI-QLYSYA--GS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHE 494 (945)
Q Consensus 424 ~~-~dg~i-~vwd~~--~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd--~~~~~~~~~~~~~ 494 (945)
.. .+=.+ .++-+. .. +.......-.+|...|.++ ++++ ++.+++ .|+.|++|+ .+|+.+..+.+|.
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 21 11111 111111 00 1111111112344444443 4454 444433 588899998 4577888888999
Q ss_pred CCEEEEEeee-cCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCC---eEEEEEEcCCCCEEEEEee--------cCCC
Q 002264 495 APVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGT--------SKDG 562 (945)
Q Consensus 495 ~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~--------~~d~ 562 (945)
..++.++|++ .+++.+|++++.|++|++||+.+++....+..+.. .+.+++|+|+|.++++++. .+..
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 9999999998 66789999999999999999999999988876443 5778899999998865331 1224
Q ss_pred CceEEEEeCCCCceeeEe-----ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 563 DSFLVEWNESEGTIKRTY-----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
+++|++||..+++.+..+ .+|.. .+. ..+.++..+++++.||+|+|||+.+++++..+..|.. ..+.+++|
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vvs~vaf 334 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLPPGQAG-RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHWSFVKW 334 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCTTCCC-CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC---CCCCEEEE
T ss_pred CcEEEEEECCCCEEEEEEEeeccCCCcc-eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeEEEEEE
Confidence 899999999999887665 24443 232 3333478899999999999999999999999976543 13446899
Q ss_pred cCCCCEEEEEECCCcEEEEEC
Q 002264 638 SKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~ 658 (945)
+|||++|++|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=259.29 Aligned_cols=250 Identities=6% Similarity=-0.066 Sum_probs=175.0
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC---
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--- 416 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--- 416 (945)
...|...+....+++++. +||+|+.|++|+|||..+++..... ....+.+|.+.|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~ 149 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYS 149 (393)
T ss_dssp CC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEEC
T ss_pred ccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEccccc
Confidence 334555666666666776 6999999999999999887654211 1134789999999999998
Q ss_pred -----CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE-
Q 002264 417 -----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (945)
Q Consensus 417 -----~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~- 489 (945)
||++||+|+.|++|+|||+.++..+. .+.+|..+|.+++|+|++.. +|++|+.|++|++|| .+++....
T Consensus 150 ~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 150 ADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp TTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-----
T ss_pred cccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccc
Confidence 89999999999999999998876554 56679999999999999865 799999999999999 66654322
Q ss_pred ------------------------ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEE
Q 002264 490 ------------------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (945)
Q Consensus 490 ------------------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 545 (945)
..+|...+.++.|.. +++..+++++.|+++++||+........+..+...+..+.
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp -----CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred cccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 245777888888863 4778999999999999999987665554444333333222
Q ss_pred ------------------EcC-CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC
Q 002264 546 ------------------YSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (945)
Q Consensus 546 ------------------~s~-~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 606 (945)
++| .+..+++++. .++.|++||..+++....+.++.. .|.+++|+|+|++|++++.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs---~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHS---QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEET---TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESS
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEEC---CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCC
Confidence 333 3344444332 389999999999998888888776 89999999999999999877
Q ss_pred CcEEEEEC
Q 002264 607 SQIKFWDM 614 (945)
Q Consensus 607 g~i~iwd~ 614 (945)
| +.+|.+
T Consensus 381 G-v~lvrL 387 (393)
T 4gq1_A 381 S-VLLTRL 387 (393)
T ss_dssp E-EEEEEE
T ss_pred C-eEEEEE
Confidence 6 555554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-25 Score=250.11 Aligned_cols=335 Identities=11% Similarity=0.075 Sum_probs=248.1
Q ss_pred EecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEc--cCCCeeEEec
Q 002264 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDYD 535 (945)
Q Consensus 459 ~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~ 535 (945)
|+|++. ++++++.|++|.+|| .+++++.++..+.. +.+++|+| +|++|++++.|++|.+||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 778887 889999999999999 88999988884333 88888876 6789999999999999999 7777666666
Q ss_pred CCCCeEEEEEEcC----CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc----------cCcceEEEEEcCCCCEEE
Q 002264 536 APGHWCTTMLYSA----DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF----------RKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 536 ~~~~~i~~~~~s~----~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~ 601 (945)
.+..+..++|+| ||+++++++. .++.|.+||..+++++..+..+ ....+..+.++|++..++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 455689999999 9999998874 3789999999999998887652 233577899999876655
Q ss_pred E-EECCCcEEEEECCCCeeEE--EeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCcccccc
Q 002264 602 A-VGEDSQIKFWDMDNVNILT--STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 602 ~-~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
+ ...++.|.+||+.+.+.+. .+.. ...+.+++|+|+|+++++++ .+++|.+||..++ ++...+....
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~----- 366 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGK----- 366 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS-----
T ss_pred EEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCC-----
Confidence 4 5588999999998866544 3332 23678999999999877665 5889999999887 3322221100
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
T Consensus 367 -------------------------------------------------------------------------------- 366 (543)
T 1nir_A 367 -------------------------------------------------------------------------------- 366 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceEEEEEecC-CCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCcee
Q 002264 758 PESTDTSSKVVRLLYTNS-AVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP 835 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~d-g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 835 (945)
..|......+ ++|+ |..++++. .|++|.+|++....... ...+.+. .+.+ |...+.
T Consensus 367 ---~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~---------------~~~~~v~-~l~~--~g~~~~ 424 (543)
T 1nir_A 367 ---TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---------------YAWKKVA-ELQG--QGGGSL 424 (543)
T ss_dssp ---SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT---------------TBTSEEE-EEEC--SCSCCC
T ss_pred ---CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch---------------hcCeEEE-EEEc--CCCCce
Confidence 0032222222 4677 44455544 47999999875421000 0011111 2444 667788
Q ss_pred EEeecCCCceEEecC--------CCeEEEEeccCceEE-EEe--------cCCCCCeeEEEeecCCCceEEEee-----c
Q 002264 836 CIALSKNDSYVMSAT--------GGKISLFNMMTFKVM-TTF--------MSPPPASTFLAFHPQDNNIIAIGT-----E 893 (945)
Q Consensus 836 ~l~~s~dg~~la~~s--------d~~i~iwd~~~~~~~-~~~--------~~h~~~i~~l~~s~~~~~~lasg~-----~ 893 (945)
.++++|||++|++++ +++|.|||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence 999999999999986 458999999998876 443 34567799999999 888777653 4
Q ss_pred CceEEEEecccceEEEEecCC
Q 002264 894 DSTIHIYNVRVDEVKSKLKGH 914 (945)
Q Consensus 894 dg~v~vwd~~~~~~~~~l~~h 914 (945)
|+.|.|||..+++++.+++.+
T Consensus 504 ~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 504 SSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CCEEEEEETTTTEEEEEECCT
T ss_pred CCeEEEEECCCceEEEeecCC
Confidence 799999999999999999865
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-25 Score=251.11 Aligned_cols=316 Identities=13% Similarity=0.056 Sum_probs=241.3
Q ss_pred CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC--CCCceeeEecccc
Q 002264 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTYAGFR 584 (945)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~--~~~~~~~~~~~~~ 584 (945)
++.++++++.|++|.+||..+++....+..... +..++|+|||+++++++. ++.|.+||+ .+++.+..+....
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEECCS
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC----CCeEEEEECcCCCCcEEEEEecCC
Confidence 568899999999999999999988888774433 889999999999999985 689999999 8888888887433
Q ss_pred CcceEEEEEcC----CCCEEEEEE-CCCcEEEEECCCCeeEEEeecCC---------CCCCccEEEEcCCCCE-EEEEEC
Q 002264 585 KKSNGVVQFDT----TQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEG---------GLPNLPRLRFSKEGNL-LAVTTA 649 (945)
Q Consensus 585 ~~~~~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~sp~g~~-l~~~~~ 649 (945)
....++|+| +|+++++++ .++.|.+||..+++++..+...+ ....+.++.++|++.. +++...
T Consensus 223 --~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 223 --EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp --EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred --CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 578899999 999999988 58999999999999998887532 1226789999997665 556667
Q ss_pred CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCc
Q 002264 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (945)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (945)
++.|.+||..+... +.
T Consensus 301 ~g~i~vvd~~~~~~-l~--------------------------------------------------------------- 316 (543)
T 1nir_A 301 TGKVLLVNYKDIDN-LT--------------------------------------------------------------- 316 (543)
T ss_dssp TTEEEEEECTTSSS-CE---------------------------------------------------------------
T ss_pred CCeEEEEEecCCCc-ce---------------------------------------------------------------
Confidence 89999999876521 00
Q ss_pred cccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeee
Q 002264 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASA 808 (945)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~ 808 (945)
+..+ . +...+..++|+|+|+++++++ .+++|.+||... ++.....
T Consensus 317 ----------~~~i------------~------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t------g~l~~~i 362 (543)
T 1nir_A 317 ----------VTSI------------G------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD------RRLSALV 362 (543)
T ss_dssp ----------EEEE------------E------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT------TEEEEEE
T ss_pred ----------eEEe------------c------cCcCccCceECCCCCEEEEEecCCCeEEEEECCC------CeEEEee
Confidence 0000 0 122345688999999877665 478999997532 2221110
Q ss_pred ccccccCCCcccccccccCCCcCCceeEEeecCC-CceEEecC--CCeEEEEeccC-------ceEEEEecCCCCCeeEE
Q 002264 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-DSYVMSAT--GGKISLFNMMT-------FKVMTTFMSPPPASTFL 878 (945)
Q Consensus 809 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d-g~~la~~s--d~~i~iwd~~~-------~~~~~~~~~h~~~i~~l 878 (945)
. . + ...|.+....+ ++|+ |.++++++ +++|.|||+.+ ++++.++.+|.+.+..+
T Consensus 363 ~-----~--g--------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v 426 (543)
T 1nir_A 363 D-----V--G--------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI 426 (543)
T ss_dssp E-----C--S--------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE
T ss_pred c-----c--C--------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE
Confidence 0 0 0 01143333333 4676 67777764 68999999998 89999999999999999
Q ss_pred EeecCCCceEEEee-------cCceEEEEecccceEE-EEe--------cCCCcceeEEEecCCcceeeee-----cCCc
Q 002264 879 AFHPQDNNIIAIGT-------EDSTIHIYNVRVDEVK-SKL--------KGHQKRITGLAFSTSLNILVSS-----GADA 937 (945)
Q Consensus 879 ~~s~~~~~~lasg~-------~dg~v~vwd~~~~~~~-~~l--------~~h~~~V~~l~~s~dg~~l~s~-----~~Dg 937 (945)
+|+| ++++|++++ .+++|.|||+.+++.. ..+ ..+...+..++|+|||++|+++ +.|+
T Consensus 427 ~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~ 505 (543)
T 1nir_A 427 KTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 505 (543)
T ss_dssp ECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCC
T ss_pred EcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCC
Confidence 9999 999999987 3789999999998876 554 4567899999999999998865 3489
Q ss_pred eEEEEec
Q 002264 938 QVTLCVE 944 (945)
Q Consensus 938 ~i~vWdl 944 (945)
.|.|||.
T Consensus 506 ~i~v~D~ 512 (543)
T 1nir_A 506 ALVVVDD 512 (543)
T ss_dssp EEEEEET
T ss_pred eEEEEEC
Confidence 9999996
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=244.68 Aligned_cols=304 Identities=8% Similarity=0.019 Sum_probs=231.0
Q ss_pred CcEEEEEEeCCCCeEEEEEe----CcC----cEEEEEc--CCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGS----SNG----EITLWEL--AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..|...+|++.|..++++|+ .|| +|+|||+ .+++.+.. ..+.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-----------------NSYKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-----------------EEEEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-----------------eEEEcChhHHHHHHH
Confidence 47888999999987788886 457 8999999 88876532 225567777777766
Q ss_pred cC--------------CCCEEEEEECC------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 415 SP--------------DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 415 s~--------------~g~~las~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
++ .+..++.++.+ +.|++||++++ ..+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 64 26677766654 79999999853 333 5678999999999999999 78888877
Q ss_pred C---cEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEE-EEEcCCe--EEEEEccCCCeeEEecCCCCeEEEEEEc
Q 002264 475 K---LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (945)
Q Consensus 475 ~---~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s 547 (945)
+ .|++|| .+++. ..+..|...+.+++|+| +|+.|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 999999 66665 46777888999999987 567666 6666654 99999987665 4566677789999999
Q ss_pred CCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeeEEEee
Q 002264 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 624 (945)
|||+.|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ +.|++||+.+++... +.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec
Confidence 99999998874 223448999999887643 3333333 67789999999999988854 589999999988743 43
Q ss_pred cCCCCCCccEEEEcCCCCEEEEEECCC---cEEEEECCCCccccccccCCccccccCcceeeeecccc
Q 002264 625 AEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (945)
Q Consensus 625 ~~~~~~~v~~v~~sp~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g 689 (945)
.+ . .+.+++|+|||++|++++.++ .|++||+..+ ..+.+..+. +.+.+++|+|.-
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~-----~~v~~~~~~~~~ 409 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATD-----GQVKFPAWSPYL 409 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSS-----SEEEEEEECCCC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCC-----CCCcCCcccccc
Confidence 32 2 689999999999999988877 7999998754 334444433 458889998863
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=232.18 Aligned_cols=304 Identities=13% Similarity=0.079 Sum_probs=220.7
Q ss_pred CEEEEEeeecCCccEEEEEE----cCC----eEEEEEc--cCCCeeE--EecCCCCeEEEEEEcC--------------C
Q 002264 496 PVYSICPHHKENIQFIFSTA----IDG----KIKAWLY--DTMGSRV--DYDAPGHWCTTMLYSA--------------D 549 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~----~dg----~i~iwd~--~~~~~~~--~~~~~~~~i~~~~~s~--------------~ 549 (945)
.+....|.+.+ ..++++|+ .|| .+++||+ .+++.+. .+..+...+..+++++ .
T Consensus 64 ~~~~~~w~~~g-~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 64 EVQPAAWSALG-IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GCCHHHHHTTT-CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred CcCHHHHHhcC-CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 45555665542 35666776 467 8999999 8887663 4666666565555553 2
Q ss_pred CCEEEEEeecCCCC---ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC---cEEEEECCCCeeEEEe
Q 002264 550 GSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTST 623 (945)
Q Consensus 550 ~~~l~~~~~~~d~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 623 (945)
+..++.++.+. ++ +.|++||+.. ...+.+.++.. .+.+++|+|+|+.|++++.++ .|++||+.+++... +
T Consensus 143 ~~~l~~~s~~~-~~~~~~~i~i~d~~g-~~~~~l~~~~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l 218 (415)
T 2hqs_A 143 RTRIAYVVQTN-GGQFPYELRVSDYDG-YNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V 218 (415)
T ss_dssp TCEEEEEEECS-SSSCCEEEEEEETTS-CSCEEEEEESS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred CCEEEEEEecC-CCCccceEEEEcCCC-CCCEEEeCCCC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence 66777666532 23 7999999974 44566666665 789999999999999999775 99999999988764 3
Q ss_pred ecCCCCCCccEEEEcCCCCEEE-EEECCCc--EEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLA-VTTADNG--FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~-~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
..+ ...+.+++|+|||+.|+ +++.++. |++||+.++.. ..+
T Consensus 219 ~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l-------------------------------- 262 (415)
T 2hqs_A 219 ASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQV-------------------------------- 262 (415)
T ss_dssp ECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEC--------------------------------
T ss_pred ecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeC--------------------------------
Confidence 333 23789999999999888 5555554 88899876521 100
Q ss_pred ccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEE
Q 002264 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (945)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 780 (945)
.. +...+.+++|+|||+.|+
T Consensus 263 ---------------------------------------------------------~~---~~~~~~~~~~spdg~~l~ 282 (415)
T 2hqs_A 263 ---------------------------------------------------------TD---GRSNNTEPTWFPDSQNLA 282 (415)
T ss_dssp ---------------------------------------------------------CC---CSSCEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------cC---CCCcccceEECCCCCEEE
Confidence 00 445678899999999888
Q ss_pred Eeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-C---CeEE
Q 002264 781 ALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G---GKIS 855 (945)
Q Consensus 781 ~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d---~~i~ 855 (945)
+++. ++...+|.+ +..+++... +.. +...+.+++|||||++|++++ + ..|+
T Consensus 283 ~~s~~~g~~~i~~~--------------------d~~~~~~~~--l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 283 FTSDQAGRPQVYKV--------------------NINGGAPQR--ITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp EEECTTSSCEEEEE--------------------ETTSSCCEE--CCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred EEECCCCCcEEEEE--------------------ECCCCCEEE--Eec--CCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence 8876 454444422 233333211 222 556788999999999999887 3 3699
Q ss_pred EEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCc---eEEEEecccceEEEEecCCCcceeEEEecCCcc
Q 002264 856 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS---TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (945)
Q Consensus 856 iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg---~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 928 (945)
+||+.+++. ..+..+. .+.+++|+| ++++|++++.++ .|++||+. +..+..+.+|.+.|.+++|+|.-.
T Consensus 339 ~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 339 KQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 999998877 4565554 899999999 899999888877 79999987 556788999999999999999754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-24 Score=254.57 Aligned_cols=333 Identities=12% Similarity=0.063 Sum_probs=229.1
Q ss_pred CCcEEEEEEeCCCCeEEEEEeC-cC-----cEEEEEcCCCCcccccccccccccc-----cCcccccccccCCCccEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSS-NG-----EITLWELAMRDRLVSKPFKIWDMAA-----CSLPFQASIFKDVPISVSRV 412 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~i 412 (945)
...|.+++|||||++ |++++. |+ +|.+||+.+++.............. .........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 347999999999995 777776 88 9999999988754211000000000 00000000000001348899
Q ss_pred EEcCCCCEEEEEECCCcEEEEEccCCc--ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 413 ~~s~~g~~las~~~dg~i~vwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ +|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999986 899999999872 233 4567888999999999999 777777 56999999 55555443
Q ss_pred ecCCCCC----------------EEEEEeeecCCccEEEEEEcCC---------------------------------eE
Q 002264 490 FEGHEAP----------------VYSICPHHKENIQFIFSTAIDG---------------------------------KI 520 (945)
Q Consensus 490 ~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 520 (945)
...+... +.+++|+| ||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 3333332 36678876 678888887765 78
Q ss_pred EEEEccC-CCeeEEec--CCCCeEEEEEEcCCCCEEEEEeec-CCCCceEEEEeCCCCceeeEeccccCc---ceEEEEE
Q 002264 521 KAWLYDT-MGSRVDYD--APGHWCTTMLYSADGSRLFSCGTS-KDGDSFLVEWNESEGTIKRTYAGFRKK---SNGVVQF 593 (945)
Q Consensus 521 ~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~-~d~~~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~ 593 (945)
.+||+.+ ++...... .+...+..++| |||+.|++.+.+ ...+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8899887 66544332 25568899999 999999977642 234678999999999887777655432 2356899
Q ss_pred cCCCCEEEEEECCCcEEEEECC-CCeeEEEeecCCCCCCccEE-EEcCCCCEEEEEEC-CC--cEEEEECCCCccccccc
Q 002264 594 DTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTA-DN--GFKILANAIGLRSLRAV 668 (945)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~sp~g~~l~~~~~-dg--~i~iw~~~~~~~~~~~~ 668 (945)
+|+|+.+++++.||.+.+|.++ ++. ...+..+. ..+..+ .|+|+|+.|+..+. ++ .+++|++.........+
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence 9999988888899988887765 344 55555443 367777 59999998765544 44 89999986432333333
Q ss_pred cCCccccccCcceeeeecccccceeccC
Q 002264 669 ENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 669 ~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
.. ...+..++|+|||+.++...
T Consensus 422 ~~------~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 422 SK------APGMHSASFARNASVYVDSW 443 (741)
T ss_dssp CC------SCSEEEEEECTTSSEEEEEE
T ss_pred cc------CCCceEEEECCCCCEEEEEe
Confidence 32 12366899999999987643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=253.08 Aligned_cols=324 Identities=12% Similarity=0.033 Sum_probs=233.4
Q ss_pred cccEEEEEEecCCCeeEEEEEeC-CC-----cEEEEe-CCCceEEEecCCCCC------------------------EEE
Q 002264 451 VGAVNDLAFAYPNKLLCVVTCGD-DK-----LIKVWE-LSGRKLFNFEGHEAP------------------------VYS 499 (945)
Q Consensus 451 ~~~v~~l~~s~~~~~~~l~s~s~-d~-----~i~vwd-~~~~~~~~~~~~~~~------------------------v~~ 499 (945)
...+.+++|+|||+ +|++++. |+ .|++|| .+++....+..+... +.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 45699999999999 7888887 88 899999 777766666544332 677
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
++|+| ||++|++++. +.|.+||+.++. ....+..+...+..++|+|||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECT--TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECC--CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 88876 6788888886 999999998873 3445556667899999999999999886 568999999988776
Q ss_pred eEeccccCcc---------------eEEEEEcCCCCEEEEEECCC---------------------------------cE
Q 002264 578 RTYAGFRKKS---------------NGVVQFDTTQNHFLAVGEDS---------------------------------QI 609 (945)
Q Consensus 578 ~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~dg---------------------------------~i 609 (945)
.....+.... +..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 5544332211 36689999999999988665 78
Q ss_pred EEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC-----CCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 610 KFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-----DNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 610 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
++||+.+ ++.........+...+..++| |||+.|++++. +..|++||+.++.. ..
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~----------------- 326 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RV----------------- 326 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE-EE-----------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce-EE-----------------
Confidence 9999988 876554433233447889999 99999997764 34577777655410 00
Q ss_pred eecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCC
Q 002264 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (945)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (945)
T Consensus 327 -------------------------------------------------------------------------------- 326 (741)
T 2ecf_A 327 -------------------------------------------------------------------------------- 326 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCC
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg 843 (945)
+.....++ .-..+.+++|+|||
T Consensus 327 ---------------~~~~~~~~-------------------------------------------~~~~~~~~~~spdg 348 (741)
T 2ecf_A 327 ---------------LAHETSPT-------------------------------------------WVPLHNSLRFLDDG 348 (741)
T ss_dssp ---------------EEEEECSS-------------------------------------------CCCCCSCCEECTTS
T ss_pred ---------------EEEcCCCC-------------------------------------------cCCcCCceEECCCC
Confidence 00000000 00123457888888
Q ss_pred ceEEecC-CCeEEEEecc-CceEEEEecCCCCCeeEE-EeecCCCceE-EEeecCc--eEEEEeccc-ceEEEEecCCCc
Q 002264 844 SYVMSAT-GGKISLFNMM-TFKVMTTFMSPPPASTFL-AFHPQDNNII-AIGTEDS--TIHIYNVRV-DEVKSKLKGHQK 916 (945)
Q Consensus 844 ~~la~~s-d~~i~iwd~~-~~~~~~~~~~h~~~i~~l-~~s~~~~~~l-asg~~dg--~v~vwd~~~-~~~~~~l~~h~~ 916 (945)
+++++++ +|.++||.++ +++ ...+..|...|..+ .|+| +++.| ++++.++ .++||++.. +..+..+.. ..
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~ 425 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP 425 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC
Confidence 8777777 6766666554 344 67788788888887 5999 77655 5556565 899999874 666677775 66
Q ss_pred ceeEEEecCCcceeeeecCC----ceEEEEec
Q 002264 917 RITGLAFSTSLNILVSSGAD----AQVTLCVE 944 (945)
Q Consensus 917 ~V~~l~~s~dg~~l~s~~~D----g~i~vWdl 944 (945)
.+.+++|||||++|+....+ ..+.+|++
T Consensus 426 ~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 426 GMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred CceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 78899999999998876443 46777774
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=257.16 Aligned_cols=321 Identities=9% Similarity=0.081 Sum_probs=226.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc---cEEEEEEcCCCCEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVG 422 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~i~~s~~g~~la 422 (945)
.+.+++|||||+ ++++ +.||+|++||+.+++... .+.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEEE
Confidence 577899999999 4666 679999999999887542 2444543 499999999999999
Q ss_pred EEECC---------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC
Q 002264 423 VAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (945)
Q Consensus 423 s~~~d---------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~ 492 (945)
+++.+ +.+.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++|| .+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7788999998865 22223345666689999999999 6777774 7999999 66666655554
Q ss_pred CCCCE------------------EEEEeeecCCccEEEEEEcCC----------------------------------eE
Q 002264 493 HEAPV------------------YSICPHHKENIQFIFSTAIDG----------------------------------KI 520 (945)
Q Consensus 493 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 520 (945)
+...+ .+++|+| ||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44333 6788876 668888887553 79
Q ss_pred EEEEccCCCeeEEecCC------CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce----EE
Q 002264 521 KAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN----GV 590 (945)
Q Consensus 521 ~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~----~~ 590 (945)
++||+.+++....+..+ ...+..++|+|||+.+++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887755555543 457899999999998877765333457899999999987776654432232 36
Q ss_pred EEEcCCCCEEEEE--ECCC------cEEEEE-CCCCee--EEEeecCCCCCCccE-EEEcCCCCEEEEEECC---CcEEE
Q 002264 591 VQFDTTQNHFLAV--GEDS------QIKFWD-MDNVNI--LTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD---NGFKI 655 (945)
Q Consensus 591 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~sp~g~~l~~~~~d---g~i~i 655 (945)
++|+|+|+.|+.. ..++ .|++|| ..++.. ...+... + ..+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977764 4666 577787 444441 3333321 1 23444 6999999999877665 78999
Q ss_pred EECCCCcc-ccccccCCccccccCcceeeeecccccceeccCC
Q 002264 656 LANAIGLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 656 w~~~~~~~-~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
|++..... ....+.... .....+..++|+|||+.++....
T Consensus 389 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDL--VENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTTS--SSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceecccc--cCCCCeEEEEECCCCCEEEEEcc
Confidence 99865421 222222100 01234678999999998876544
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-22 Score=236.77 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=165.3
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEccCCccc-ccceeecccc-----------------ccEEEEEEecCCCeeEEEE
Q 002264 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHV-----------------GAVNDLAFAYPNKLLCVVT 470 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~v~~l~~s~~~~~~~l~s 470 (945)
+..+.|+ |+.+++++.|+ | +||+.+|+.+ . .+..|. ..|.+++|+|| . .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457888 67777787888 8 9999998763 3 222232 56999999999 5 3444
Q ss_pred EeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-----CCeeEEecCCCCe-----
Q 002264 471 CGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHW----- 540 (945)
Q Consensus 471 ~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~----- 540 (945)
+. ++.|++||..+.....+..+...+.+++|+| ||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EE-TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EE-CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 43 5999999944444455566777788889877 66788884 789999999988 6555433333222
Q ss_pred ---------EEEEEEcCCCCEEEEEeecC-----------------------------CCCceEEEEeCCCCceeeEecc
Q 002264 541 ---------CTTMLYSADGSRLFSCGTSK-----------------------------DGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 541 ---------i~~~~~s~~~~~l~~~~~~~-----------------------------d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
+.++.|+|||++|++++.+. ..+..|++||+.+++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 47899999999999887321 1357899999999886554432
Q ss_pred -ccCcceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeeEEEeecCCCC---CCccEEEEcC--CCCEEEEEECCC
Q 002264 583 -FRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGL---PNLPRLRFSK--EGNLLAVTTADN 651 (945)
Q Consensus 583 -~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp--~g~~l~~~~~dg 651 (945)
.....+..++|+|+|+.|++++.++ .|++||+.+++....+...... ..+.+++|+| ||+++++++.|+
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 2233688899999999999988665 8999999998333333211111 1346789999 999998888888
Q ss_pred cEEEEECC
Q 002264 652 GFKILANA 659 (945)
Q Consensus 652 ~i~iw~~~ 659 (945)
.+++|.+.
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-21 Score=210.70 Aligned_cols=279 Identities=10% Similarity=0.055 Sum_probs=203.7
Q ss_pred EEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC-CC
Q 002264 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KH 428 (945)
Q Consensus 350 v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~-dg 428 (945)
..|.+++++++++++.++.|.+||..+++.... +..+...+ +++|+|+|+++++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777787889999999999999998876532 22345556 9999999997777666 88
Q ss_pred cEEEEEccCCcc-cccceeeccccccEEEEEEecCCCeeEEEEEeCCC---cEEEEe-CCCceEEEecCCCCCEEEEEee
Q 002264 429 LIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 429 ~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~---~i~vwd-~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
.|.+||+.+++. .. .+..+..+..+++|+|+|+ +++++..++ .|.+|| .+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999998875 33 4555666665699999999 666555443 899999 777777776644 456889997
Q ss_pred ecCCcc-EEEEEEcCCe-EEEEEccCCCeeE----EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce-
Q 002264 504 HKENIQ-FIFSTAIDGK-IKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI- 576 (945)
Q Consensus 504 ~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~- 576 (945)
| +|+ ++++...++. |.+|+++...... ...........++|+|+|+++++++. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 7 455 4455566688 9999988654432 22233456789999999998777653 478999999999888
Q ss_pred --eeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCee--EEEeecC--CCCCC---ccEEEEcCCCCEEEE
Q 002264 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI--LTSTDAE--GGLPN---LPRLRFSKEGNLLAV 646 (945)
Q Consensus 577 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~v~~sp~g~~l~~ 646 (945)
+..+... ..+..++|+|+|+++++++ .++.|.+||+.+++. +..+... ..... ...++|+|||++|++
T Consensus 212 ~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 7666654 2467799999999887765 578899999999887 4433322 11111 245899999998876
Q ss_pred EEC-CCcEEEEECCCC
Q 002264 647 TTA-DNGFKILANAIG 661 (945)
Q Consensus 647 ~~~-dg~i~iw~~~~~ 661 (945)
++. ++.|.+|++.+.
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 665 569999999765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=243.19 Aligned_cols=347 Identities=10% Similarity=0.055 Sum_probs=229.9
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC---CEEEEEeeecCCccEEEEEEcC---------Ce
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA---PVYSICPHHKENIQFIFSTAID---------GK 519 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~d---------g~ 519 (945)
.+.+++|+|||+ ++++ +.||+|++|| .+++....+..|.. .|.+++|+| ||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~--~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTE--FIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSC--BCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCc--EEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccceeecceee
Confidence 467899999999 6666 7899999999 88888777777765 489999977 67899998774 78
Q ss_pred EEEEEccCCCeeEEecC---CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc----------
Q 002264 520 IKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK---------- 586 (945)
Q Consensus 520 i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~---------- 586 (945)
+.+||+.+++. ..+.. +...+..++|||||+.|++++ ++.|++||+.+++..+....+...
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-----~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEE-----CCeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 88999988765 22322 233478899999999999987 578999999998877665543321
Q ss_pred -------ceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 587 -------SNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 587 -------~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.+..++|+|||+.|++++. ++.+.+|++..... .....+..+.|.++|.. ..+..|++||+
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~G~~----~~~~~l~~~d~ 235 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------SIYPTVKPYHYPKAGSE----NPSISLHVIGL 235 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------SSSCCCEEEECCBTTSC----CCEEEEEEEES
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC-------cCCCcceeccCCCCCCC----CCeeEEEEEEC
Confidence 1256888888888888764 34666776543211 11224677777777652 23457888887
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
.++. ....+..+..
T Consensus 236 ~~~~-~~~~l~~~~~----------------------------------------------------------------- 249 (723)
T 1xfd_A 236 NGPT-HDLEMMPPDD----------------------------------------------------------------- 249 (723)
T ss_dssp SSSC-CCEECCCCCC-----------------------------------------------------------------
T ss_pred CCCc-eeEEeeCCcc-----------------------------------------------------------------
Confidence 6652 1111110000
Q ss_pred cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeec----CeEEEEeecCCCCCCCCceeeeecccccc
Q 002264 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN----GVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (945)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d----g~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (945)
+ ..+...+..++|+|||+.+++.... ..|++||+
T Consensus 250 ------------------~---~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~--------------------- 287 (723)
T 1xfd_A 250 ------------------P---RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA--------------------- 287 (723)
T ss_dssp ------------------G---GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET---------------------
T ss_pred ------------------C---CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC---------------------
Confidence 0 0034567889999999987666542 45666654
Q ss_pred CCCcccccccccCCCcCCce----eEEeecCCCceEEec-C--CC------eEEEEe-ccCce--EEEEecCCCCCeeE-
Q 002264 815 PSSGLLMANDVAGVNLEEAV----PCIALSKNDSYVMSA-T--GG------KISLFN-MMTFK--VMTTFMSPPPASTF- 877 (945)
Q Consensus 815 ~~~~~~~~~~l~~~~~~~~i----~~l~~s~dg~~la~~-s--d~------~i~iwd-~~~~~--~~~~~~~h~~~i~~- 877 (945)
.+++........ +...+ ..++|||||+.|+.. + ++ .|.+|| ..+++ +...+..+...+..
T Consensus 288 -~~g~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~ 364 (723)
T 1xfd_A 288 -TTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI 364 (723)
T ss_dssp -TTCCEEEEEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred -CCCcceEEEEec--cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEee
Confidence 333321110011 22333 378999999988865 3 56 477777 34444 14555544444554
Q ss_pred EEeecCCCceEEEeecC---ceEEEEecccc--eEEEEecC---CCcceeEEEecCCcceeeee
Q 002264 878 LAFHPQDNNIIAIGTED---STIHIYNVRVD--EVKSKLKG---HQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 878 l~~s~~~~~~lasg~~d---g~v~vwd~~~~--~~~~~l~~---h~~~V~~l~~s~dg~~l~s~ 933 (945)
++|+| +++.|+..+.+ +.+++|++... .....+.. |...+..++|+|||++|+..
T Consensus 365 ~~~sp-dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 365 LAYDE-KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEET-TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred eEEcC-CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 79999 88887665554 78999998743 23444543 67789999999999988764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-21 Score=209.59 Aligned_cols=275 Identities=11% Similarity=0.091 Sum_probs=212.4
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEEeC------cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
......+..++|+|+|+++++++.. ++.|.+||..+++.+.. +. ....+..++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 3445688999999999975444432 67899999998876532 11 1234678999
Q ss_pred cCCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccc---------cEEEEEEecCCCeeEEEEE--eCCCcEEEEe-
Q 002264 415 SPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVG---------AVNDLAFAYPNKLLCVVTC--GDDKLIKVWE- 481 (945)
Q Consensus 415 s~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~---------~v~~l~~s~~~~~~~l~s~--s~d~~i~vwd- 481 (945)
+|+|++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+|+. ++++ +.++.|.+||
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWVVDG 171 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEEEET
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEEEcC
Confidence 9999966555 4578999999999876553 333322 2789999999995 4433 4588999999
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC----CCCeEEEEEEcCCCCEEEEEe
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~ 557 (945)
.+++.+..+..+...+.+++|++ +++.+++++.++.|.+||..+++....+.. +...+..++|+|++++++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 78888888775666688888876 567899999999999999998887766654 344678899999999888776
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
. .++.|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++
T Consensus 250 ~---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 320 (353)
T 3vgz_A 250 S---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLA 320 (353)
T ss_dssp S---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEE
T ss_pred C---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEE
Confidence 4 368999999999998887775432 4589999999777766 68999999999999988887543 578999
Q ss_pred EcCCCCEEEEEECCC
Q 002264 637 FSKEGNLLAVTTADN 651 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg 651 (945)
|+|+|++++++..++
T Consensus 321 ~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSADGKTLYVSVKQK 335 (353)
T ss_dssp ECTTSCEEEEEEECC
T ss_pred EcCCCCEEEEEEccc
Confidence 999999887776553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-22 Score=236.18 Aligned_cols=317 Identities=12% Similarity=0.099 Sum_probs=218.6
Q ss_pred EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceE-EEecCCC-----------------CCEEEEEeeecCCccEEEEE
Q 002264 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FNFEGHE-----------------APVYSICPHHKENIQFIFST 514 (945)
Q Consensus 454 v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~~~l~s~ 514 (945)
+..+.|+ |. .+++++.|+ | +|| .+|+.+ ..+..+. ..|.+++|+|+ ..++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd---~~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR---GLVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT---TEEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC---CeEEEE
Confidence 4557888 55 566677777 8 999 777663 3443332 46899999774 344444
Q ss_pred EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-----CceeeEeccccCcc--
Q 002264 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-----GTIKRTYAGFRKKS-- 587 (945)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-----~~~~~~~~~~~~~~-- 587 (945)
.++.|++||+.+++... +..+...+.+++|+|||+.|+++. ++.|++||+.+ ++.......+....
T Consensus 99 -~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 46999999998765443 344455688899999999999864 78999999998 77665444333211
Q ss_pred -----------eEEEEEcCCCCEEEEEE---------------------------------CCCcEEEEECCCCeeEEEe
Q 002264 588 -----------NGVVQFDTTQNHFLAVG---------------------------------EDSQIKFWDMDNVNILTST 623 (945)
Q Consensus 588 -----------~~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 623 (945)
+..++|+|+|++|++++ .++.|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 46799999999999987 4467999999998876554
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCC-----cEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADN-----GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
....+...+.+++|+|||+.|++++.++ .|++||+.++... ..
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~-~~------------------------------- 299 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV-RT------------------------------- 299 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE-EE-------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee-eE-------------------------------
Confidence 3333344688999999999999887665 7777777654100 00
Q ss_pred CCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCe
Q 002264 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (945)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 778 (945)
T Consensus 300 -------------------------------------------------------------------------------- 299 (706)
T 2z3z_A 300 -------------------------------------------------------------------------------- 299 (706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC--CCceEEecC-CCeEE
Q 002264 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK--NDSYVMSAT-GGKIS 855 (945)
Q Consensus 779 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~--dg~~la~~s-d~~i~ 855 (945)
+......+ ....+.+++|+| ||+++++++ ++.++
T Consensus 300 ~~~~~~~~-------------------------------------------~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 300 LFVETDKH-------------------------------------------YVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp EEEEECSS-------------------------------------------CCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred EEEccCCC-------------------------------------------eECccCCceeecCCCCEEEEEEccCCccE
Confidence 00000000 011235578888 888888887 77788
Q ss_pred EEecc-CceEEEEecCCCCCeeE-EEeecCCCceEEE-eecCc----eEEEEecccceEEEEecCCCcceeEEEecCCcc
Q 002264 856 LFNMM-TFKVMTTFMSPPPASTF-LAFHPQDNNIIAI-GTEDS----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (945)
Q Consensus 856 iwd~~-~~~~~~~~~~h~~~i~~-l~~s~~~~~~las-g~~dg----~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 928 (945)
||+++ +++.+..+..+...+.+ ++|+| +++.|+. ++.++ .|+.||+.+++ +..+. |...+.+++|||||+
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGS 413 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSS
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCC
Confidence 88776 66777888878777877 89999 7766554 44444 67777777765 44454 677899999999999
Q ss_pred eeeeecCC----ceEEEEec
Q 002264 929 ILVSSGAD----AQVTLCVE 944 (945)
Q Consensus 929 ~l~s~~~D----g~i~vWdl 944 (945)
+|+.++.+ +.|++||+
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EEEEEEECSSCSCEEEEEES
T ss_pred EEEEEecCCCCCcEEEEEEC
Confidence 98876443 56999986
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=207.27 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=191.0
Q ss_pred EEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccC-Ccc
Q 002264 362 VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-SND 440 (945)
Q Consensus 362 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~-~~~ 440 (945)
+++.|++|++||+.+++... +..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999998876532 445788999999999999999987 78999999998 765
Q ss_pred cccceeeccc-cccEEEEEEecCCCeeEEEEEe--CCCcEEEEe--CCCceEEEecCCCCCEEEEEeeecCCccEEE-EE
Q 002264 441 LRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-ST 514 (945)
Q Consensus 441 ~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~ 514 (945)
.. ....| ...+.+++|+|+++ ++++++ .++...+|. ..+.....+..+. .+..++|+| +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 43 33344 46789999999999 777777 345556655 4444455555444 488888877 556665 78
Q ss_pred EcCCeEEEEEccCC-CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCceeeEeccccCcceEEEE
Q 002264 515 AIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQ 592 (945)
Q Consensus 515 ~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 592 (945)
+.++.+++|+++.. .....+..+...+.+++|+|+++.+++++. .++.+.+|++. .+.....+..+.. .+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCeE
Confidence 89999999997543 344455566678999999999999887763 25667777765 4445556665544 678899
Q ss_pred EcCCCCEEEEEECC-----------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC
Q 002264 593 FDTTQNHFLAVGED-----------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 593 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|+|+.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999988865 569999999887654444323334789999999999998887653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-21 Score=203.96 Aligned_cols=277 Identities=6% Similarity=0.049 Sum_probs=193.8
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCee-EE
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNI-LT 621 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~ 621 (945)
..|.+++.++++... .++.|.+||..+++....+..+.. .. .++|+|+++++++++. ++.|++||+.+++. ..
T Consensus 3 ~~~~~~~~~~~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQ---HLRRISFFSTDTLEILNQITLGYD-FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp ----CCCCEEEEEEG---GGTEEEEEETTTCCEEEEEECCCC-EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred eeEcCCCCEEEEEec---CCCeEEEEeCcccceeeeEEccCC-cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence 346666777555543 378999999999999888776544 45 8999999998877775 89999999999887 66
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCC---cEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~ 698 (945)
.+..+.. +..+++|+|+|++++++..++ .|.+||+.++. ....+.
T Consensus 78 ~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~----------------------------- 125 (331)
T 3u4y_A 78 AIQEGQS--SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIP----------------------------- 125 (331)
T ss_dssp EEEECSS--CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEE-----------------------------
T ss_pred ecccCCC--CccceEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEE-----------------------------
Confidence 6655433 445599999999999555553 89999997662 111110
Q ss_pred CCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCe
Q 002264 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (945)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 778 (945)
......+++|+|||++
T Consensus 126 ----------------------------------------------------------------~~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 126 ----------------------------------------------------------------IPYDAVGIAISPNGNG 141 (331)
T ss_dssp ----------------------------------------------------------------CCTTEEEEEECTTSSC
T ss_pred ----------------------------------------------------------------CCCCccceEECCCCCE
Confidence 1123467889999987
Q ss_pred EEEeee-cCe-EEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeE
Q 002264 779 LLALGS-NGV-QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKI 854 (945)
Q Consensus 779 l~~~~~-dg~-i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i 854 (945)
+++++. ++. +.+|++... +... +.. ... +. ....+..++|+|||+++++++ ++.|
T Consensus 142 l~~~~~~~~~~i~~~~~~~~-----g~~~--------~~~-~~~----~~---~~~~~~~~~~spdg~~l~v~~~~~~~v 200 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDAD-----GVLF--------DTG-QEF----IS---GGTRPFNITFTPDGNFAFVANLIGNSI 200 (331)
T ss_dssp EEEEEETTTTEEEEEEECTT-----CCEE--------EEE-EEE----EC---SSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEecCCCceEEEEEECCC-----CcEe--------ecC-Ccc----cc---CCCCccceEECCCCCEEEEEeCCCCeE
Confidence 766655 477 999987532 1111 000 000 11 344578999999999665554 6889
Q ss_pred EEEeccCceE---EEEecCCCCCeeEEEeecCCCceEEEe-ecCceEEEEecccceE--EEEecCC----Ccc---eeEE
Q 002264 855 SLFNMMTFKV---MTTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNVRVDEV--KSKLKGH----QKR---ITGL 921 (945)
Q Consensus 855 ~iwd~~~~~~---~~~~~~h~~~i~~l~~s~~~~~~lasg-~~dg~v~vwd~~~~~~--~~~l~~h----~~~---V~~l 921 (945)
.+||+.+++. +..+.. ...+..++|+| ++++|+++ ..++.|.+||+.+++. +..+..+ ... +..+
T Consensus 201 ~v~d~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (331)
T 3u4y_A 201 GILETQNPENITLLNAVGT-NNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQM 278 (331)
T ss_dssp EEEECSSTTSCEEEEEEEC-SSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCE
T ss_pred EEEECCCCcccceeeeccC-CCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccce
Confidence 9999999887 777764 46678999999 88866544 4678999999999876 4444322 222 2458
Q ss_pred EecCCcceeeee-cCCceEEEEec
Q 002264 922 AFSTSLNILVSS-GADAQVTLCVE 944 (945)
Q Consensus 922 ~~s~dg~~l~s~-~~Dg~i~vWdl 944 (945)
+|+|||++|+++ ..++.|.+||+
T Consensus 279 ~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 279 ALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEecCCCCcEEEEEe
Confidence 999999988654 55679999997
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=202.03 Aligned_cols=300 Identities=9% Similarity=0.061 Sum_probs=208.7
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc--
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-- 584 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-- 584 (945)
.++++++.++.|.+||+.+++....+..... .+..++|+|+|+.++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999998877776654432 4778999999988776653 36799999999998887766432
Q ss_pred --CcceEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 585 --KKSNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 585 --~~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
...+..++|+|+++.+++++ .++.|++||+.+++.+..+.... .+.+++|+|+|++++++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11356689999999999886 57999999999998888776532 57889999999988887 6
Q ss_pred CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcc
Q 002264 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (945)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (945)
+.|.+||+.++ +....+..... ...+.|+|+|+.++
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~------~~~~~~s~dg~~l~------------------------------------- 189 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSW------EAETYAQPDVLAVW------------------------------------- 189 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTT------TTTTBCCCBCCCCC-------------------------------------
T ss_pred CeEEEEECCCC-cEeeeeecccc------CCCceeCCCccEEe-------------------------------------
Confidence 89999999887 33333322110 11235666665543
Q ss_pred ccCCCCCCc--ccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeee
Q 002264 731 VDDVTDKPK--PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (945)
Q Consensus 731 ~~~~d~~i~--vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~ 808 (945)
.....+... +|.. ....++.... ......+.+||+
T Consensus 190 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~-~~~~~~v~~~d~--------------- 226 (337)
T 1pby_B 190 NQHESSGVMATPFYT---------------------------ARKDIDPADP-TAYRTGLLTMDL--------------- 226 (337)
T ss_dssp CCCTTTTEEEEEEEE---------------------------EBTTSCTTSG-GGEEEEEEEEET---------------
T ss_pred eeccCCCceeeeeec---------------------------cccccccccc-cccccceEEEeC---------------
Confidence 111111100 0000 0000000000 011124556653
Q ss_pred ccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceE
Q 002264 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (945)
Q Consensus 809 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~l 888 (945)
.+++.....+.. +...+.+++|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|
T Consensus 227 -------~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l 294 (337)
T 1pby_B 227 -------ETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVST-DGSTV 294 (337)
T ss_dssp -------TTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-TSCEE
T ss_pred -------CCCCceEeecCC--CCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC-CCceeeEEECC-CCCEE
Confidence 333322111222 45678899999999999888 78999999999998888764 35688999999 88888
Q ss_pred EEeecCceEEEEecccceEEEEecCCC
Q 002264 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (945)
Q Consensus 889 asg~~dg~v~vwd~~~~~~~~~l~~h~ 915 (945)
++++.++.|++||+.+++.+..+..+.
T Consensus 295 ~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 888999999999999999888876553
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-20 Score=201.31 Aligned_cols=306 Identities=8% Similarity=0.083 Sum_probs=200.8
Q ss_pred EEEEEEcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC--CCce--eeEeccc
Q 002264 510 FIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTI--KRTYAGF 583 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~--~~~~--~~~~~~~ 583 (945)
++++++.|+.|++||++... .......+...+.+++|+|+++++++++. .++.|.+|++. +++. +..+...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeec---CCCeEEEEEecCCCCceeeccccccC
Confidence 44455789999999996432 22222345557888999999999988874 24899999987 5553 3344432
Q ss_pred cCcceEEEEEcCCCCEEEEEEC-CCcEEEEECCC---CeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEEC
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDN---VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILAN 658 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~ 658 (945)
. .+..++|+|+++++++++. ++.|.+||+.+ ......+... ..+.+++|+|+|+++++++ .++.|.+|++
T Consensus 84 ~--~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 84 G--SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp S--CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred C--CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC---CCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 2 5778999999998888775 88899999943 3444444332 3588999999999888887 7899999999
Q ss_pred CCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCC
Q 002264 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (945)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (945)
.+......... .
T Consensus 159 ~~~~~~~~~~~-------------~------------------------------------------------------- 170 (343)
T 1ri6_A 159 SDDGHLVAQDP-------------A------------------------------------------------------- 170 (343)
T ss_dssp CTTSCEEEEEE-------------E-------------------------------------------------------
T ss_pred cCCCceeeecc-------------c-------------------------------------------------------
Confidence 75211100000 0
Q ss_pred cccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCC
Q 002264 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (945)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (945)
..... ....+..++|+|+|+++++++ .++.+.+|++.... +.......+. ..
T Consensus 171 ---------------~~~~~----~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~----g~~~~~~~~~--~~-- 223 (343)
T 1ri6_A 171 ---------------EVTTV----EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH----GNIECVQTLD--MM-- 223 (343)
T ss_dssp ---------------EEECS----TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT----SCCEEEEEEE--CS--
T ss_pred ---------------ccccC----CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC----CcEEEEeecc--cc--
Confidence 00000 123467799999999776665 68999999874311 1110000000 00
Q ss_pred cccccccccCCCcCCceeEEeecCCCceEEec-C-CCeEEEEecc----CceEEEEecCCCCCeeEEEeecCCCceEEEe
Q 002264 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-T-GGKISLFNMM----TFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (945)
Q Consensus 818 ~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~-s-d~~i~iwd~~----~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg 891 (945)
..+......+.+++|+|||++|+++ . ++.|.+||+. +.+.+..+..+.. +.+++|+| ++++|+++
T Consensus 224 -------~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~ 294 (343)
T 1ri6_A 224 -------PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAA 294 (343)
T ss_dssp -------CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEE
T ss_pred -------CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEe
Confidence 0000023456789999999887744 3 7889999998 3455556655444 89999999 88877777
Q ss_pred e-cCceEEEEecc--cce--EEEEecCCCcceeEEEecCCcc
Q 002264 892 T-EDSTIHIYNVR--VDE--VKSKLKGHQKRITGLAFSTSLN 928 (945)
Q Consensus 892 ~-~dg~v~vwd~~--~~~--~~~~l~~h~~~V~~l~~s~dg~ 928 (945)
+ .++.|.+|++. +++ .+..+... ....+++|.++.+
T Consensus 295 ~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp CTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred cCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence 6 68999999654 553 34445432 4566788887643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-20 Score=201.42 Aligned_cols=273 Identities=14% Similarity=0.155 Sum_probs=190.4
Q ss_pred CCeEEEEEeCcCcEEEEEcCC-CCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC-CcEEEE
Q 002264 356 HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-HLIQLY 433 (945)
Q Consensus 356 g~~llasgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d-g~i~vw 433 (945)
+++++++++.|+.|.+|++.. ++... .....|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTL------------------TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEE------------------EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEE------------------eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345666668899999999963 32211 0012366788999999999999998886 899999
Q ss_pred Ecc--CCcccccceeeccccccEEEEEEecCCCeeEEEE-EeCCCcEEEEe-CCCc---eEEEecCCCCCEEEEEeeecC
Q 002264 434 SYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVWE-LSGR---KLFNFEGHEAPVYSICPHHKE 506 (945)
Q Consensus 434 d~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s-~s~d~~i~vwd-~~~~---~~~~~~~~~~~v~~~~~~~~~ 506 (945)
+++ +++. .....+..+. .+.+++|+|+++ ++++ +..++.|.+|| ..+. .+..+.. ...+.+++|+|
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-- 138 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-- 138 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--
Confidence 998 5432 2222343333 789999999999 5544 44588999999 4332 3334443 34578888876
Q ss_pred CccEEEEEE-cCCeEEEEEccC-CCeeE----EecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC--Cce-
Q 002264 507 NIQFIFSTA-IDGKIKAWLYDT-MGSRV----DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI- 576 (945)
Q Consensus 507 ~~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~--~~~- 576 (945)
+++++++++ .++.|.+||+.+ +.... .... ....+..++|+|+++++++++. .++.+.+||+.. ++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 557777777 899999999987 43321 2222 3447889999999998877653 378999999953 433
Q ss_pred -eeEecccc-----CcceEEEEEcCCCCEEEEEE-CCCcEEEEECC--CC--eeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 577 -KRTYAGFR-----KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD--NV--NILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 577 -~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
...+.... ...+..++|+|+++++++++ .++.|.+|++. ++ +.+..+.... .+.+++|+|+|++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEE
Confidence 22222111 12355799999999888655 78999999998 33 3444444332 378999999999988
Q ss_pred EEE-CCCcEEEEECC
Q 002264 646 VTT-ADNGFKILANA 659 (945)
Q Consensus 646 ~~~-~dg~i~iw~~~ 659 (945)
+++ .++.|.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 888 57999999554
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-21 Score=200.84 Aligned_cols=254 Identities=9% Similarity=0.031 Sum_probs=189.9
Q ss_pred CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcCC
Q 002264 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
.++.|++||+.+++..... .+.. .+.+++|+|+++++++++ ++.|++||+.+ ++.......+. ...+.+++|+|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spd 95 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVW-QTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-TICNNDHGISPD 95 (297)
T ss_dssp CCEEEEEEETTTTEEEEEE-EESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-CCBCSCCEECTT
T ss_pred cceeEEEEeCCCCceeeec-cCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-cccccceEECCC
Confidence 4889999999998876444 3444 789999999999999987 78999999999 87766554432 246899999999
Q ss_pred CCEEEEEEC--CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCC
Q 002264 641 GNLLAVTTA--DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (945)
Q Consensus 641 g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (945)
|++|++++. ++...||.+........
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~---------------------------------------------------- 123 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPR---------------------------------------------------- 123 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCE----------------------------------------------------
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceE----------------------------------------------------
Confidence 999999983 45566665432100000
Q ss_pred CCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEE-EeeecCeEEEEeecCCC
Q 002264 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL-ALGSNGVQKLWKWHRNE 797 (945)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-~~~~dg~i~lw~~~~~~ 797 (945)
.+ . ....+..++|+|||+.++ ++..++.+++|++...
T Consensus 124 -----------------------------------~~--~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~- 161 (297)
T 2ojh_A 124 -----------------------------------LM--T----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID- 161 (297)
T ss_dssp -----------------------------------EC--C----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT-
T ss_pred -----------------------------------Ee--e----cCCCccceEECCCCCEEEEEECCCCceEEEEEECC-
Confidence 00 0 112367789999999887 6667899999986421
Q ss_pred CCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEecc-CceEEEEecCCCCC
Q 002264 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM-TFKVMTTFMSPPPA 874 (945)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~-~~~~~~~~~~h~~~ 874 (945)
++.... +.. +...+.+++|+|||+++++++ ++.++||++. .+.....+..|...
T Consensus 162 -------------------~~~~~~--~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 218 (297)
T 2ojh_A 162 -------------------SGVETR--LTH--GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG 218 (297)
T ss_dssp -------------------TCCEEE--CCC--SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE
T ss_pred -------------------CCcceE--ccc--CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc
Confidence 121111 222 567899999999999887664 6789999886 55666788888888
Q ss_pred eeEEEeecCCCceEEEeecC-----------ceEEEEecccceE--EEEecCCCcceeEEEecCCcceeeeecCCc
Q 002264 875 STFLAFHPQDNNIIAIGTED-----------STIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (945)
Q Consensus 875 i~~l~~s~~~~~~lasg~~d-----------g~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 937 (945)
+.+++|+| ++++|++++.+ +.|++||+.+++. +..+.+|...+.+++|+|||++|++++.|.
T Consensus 219 ~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 219 DWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999 89888888766 5799999998865 445557889999999999999999887664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=197.60 Aligned_cols=269 Identities=12% Similarity=0.100 Sum_probs=208.6
Q ss_pred CccEEEEEEcCCCCEEEEEEC-------CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 406 PISVSRVAWSPDGNYVGVAFT-------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~-------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
...+..++|+|+|+++++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. +++++..++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 346889999999999988874 56899999999876653 32 2345788999999995 456667789999
Q ss_pred EEe-CCCceEEEecCCCCC---------EEEEEeeecCCccEEEEEE--cCCeEEEEEccCCCeeEEecCCCCeEEEEEE
Q 002264 479 VWE-LSGRKLFNFEGHEAP---------VYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY 546 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 546 (945)
+|| .+++.+..+..+... +.+++|++ +++.+++++ .++.|.+||..+++....+......+..++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 999 788888777654432 68888877 456666655 4789999999988888777655666788999
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc---cCcceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeeEEE
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF---RKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTS 622 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 622 (945)
+|++++++++.. ++.|.+||..+++....+... ....+..++|+|+++.+++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999988864 789999999999988777642 1224677999999998887775 59999999999999888
Q ss_pred eecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 623 TDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
+.... ...++|+|+|+++++++ .++.|.+||..++ +....+... .....++|+|+|+.++++.
T Consensus 269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~------~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY-KVVKTFDTP------THPNSLALSADGKTLYVSV 332 (353)
T ss_dssp EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEEECC------SEEEEEEECTTSCEEEEEE
T ss_pred EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC-eEEEEEecC------CCCCeEEEcCCCCEEEEEE
Confidence 87643 26799999999776666 6899999999887 444444322 2367899999999776543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-20 Score=198.48 Aligned_cols=267 Identities=7% Similarity=0.004 Sum_probs=197.8
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc-cEEEEEEcCCCCEEEE-EECCCcEEEEEcc
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-SVSRVAWSPDGNYVGV-AFTKHLIQLYSYA 436 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~i~~s~~g~~las-~~~dg~i~vwd~~ 436 (945)
++++++.++.|.+||..+++.+.. +..++.. .+.+++|+|+|+++++ ++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV------------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE------------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE------------------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 588999999999999998876532 0112222 4788999999987654 4557899999999
Q ss_pred CCcccccceeecc---ccccEEEEEEecCCCeeEEEEEe------------CCCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 437 GSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG------------DDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 437 ~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~~~l~s~s------------~d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
+++.+..+. ... |...+.+++|+|+|+ ++++++ .++.|.+|| .+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRID-LSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEEE-CCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeEE-cCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 887654321 111 233678899999999 566664 579999999 77777766654 4457778
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc----------------
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS---------------- 564 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~---------------- 564 (945)
+|+| ++++++++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 8876 55777776 68999999998877666554431 012368899987765542 122
Q ss_pred -------eEEEEeCCCCceee-EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 565 -------FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 565 -------~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
.|.+||+.+++... .+..+. ..+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMD-VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCC-CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 47899999987752 222222 256789999999999988 7899999999999888876543 578999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCC
Q 002264 637 FSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|+|+|+++++++.++.|.+||+.++
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC
Confidence 9999999999988999999999887
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-20 Score=214.86 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=193.3
Q ss_pred CcEEEEEEeCCCCeEEEEEeC-cCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccEEEEEEcCCCCEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVG 422 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~s~~g~~la 422 (945)
.+|++++|+|||++ ||+++. ||++.||++.+++... +..|. ..+.+++|||| +.++
T Consensus 22 ~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~ 79 (582)
T 3o4h_A 22 VEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVIL 79 (582)
T ss_dssp SCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEE
T ss_pred cchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEE
Confidence 38999999999996 666655 9999999986654321 33444 68999999999 7788
Q ss_pred EEEC---CCcEEEEEccC--CcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 423 VAFT---KHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 423 s~~~---dg~i~vwd~~~--~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
+++. +....+|.++. ..... .+..+ ..+...+|+|+|+.+++++++.++ +.+|| .+++... +..+..
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~-l~~~~~- 152 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRE-LARLPG- 152 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEE-EEEESS-
T ss_pred EeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEE-eecCCC-
Confidence 7775 45566766543 22112 12222 234467999999865666666555 45999 6665443 333333
Q ss_pred EEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 497 VYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
.+++|+| ||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++.. ++...|++||+.
T Consensus 153 -~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~ 226 (582)
T 3o4h_A 153 -FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPR 226 (582)
T ss_dssp -CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTT
T ss_pred -ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCC
Confidence 7778877 66899988877 78999998877654 56677778999999999999995442 223489999999
Q ss_pred CCceeeEeccccCcceEEEE--------EcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 573 EGTIKRTYAGFRKKSNGVVQ--------FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
+++.. .+.++.. .+..+. |+|+|..+++++.||.+++|++ ++.... . ...+.+++|+ +|+++
T Consensus 227 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 227 DGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLV 296 (582)
T ss_dssp TCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEE
T ss_pred CCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEE
Confidence 98877 6655543 444455 9999988888999999999999 665441 1 2368899999 99999
Q ss_pred EEEECCCc---EEEEECC
Q 002264 645 AVTTADNG---FKILANA 659 (945)
Q Consensus 645 ~~~~~dg~---i~iw~~~ 659 (945)
++++.+.+ +.+|+..
T Consensus 297 ~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEETTEEEEEEEETTC
T ss_pred EEEcCCCCCCeEEEEcCC
Confidence 98887744 5666554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-19 Score=190.15 Aligned_cols=285 Identities=10% Similarity=0.115 Sum_probs=181.6
Q ss_pred EEEEeecCCCCceEEEEe--CCCCceeeE-eccccCcceEEEEEcCCCCEEEEEEC---CCcEEEEECCCCee--EEEee
Q 002264 553 LFSCGTSKDGDSFLVEWN--ESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNI--LTSTD 624 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~--~~~~~ 624 (945)
+++++.....++.|++|+ ..+++.... ...+. .....++|+|+|+ +++++. ++.|++|++.++.. +..+.
T Consensus 5 ~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~-~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 5 ILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAAT-QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEEC-SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeecc-CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 444443222344555555 455655432 22222 2466799999998 666554 68999999987764 33322
Q ss_pred cCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 625 AEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 625 ~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
.+. ..+..++|+|||++|++++ .++.|.+|++...... ..+ ..+. ..+.
T Consensus 83 ~~~--~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~-~~~------------~~~~--~~~~------------- 132 (347)
T 3hfq_A 83 APG--TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL-TLT------------DTVQ--HSGH------------- 132 (347)
T ss_dssp EES--CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE-EEE------------EEEE--CCCC-------------
T ss_pred cCC--CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe-eec------------ceee--cCCC-------------
Confidence 232 3678999999999999888 6789999998532110 000 0000 0000
Q ss_pred cccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee
Q 002264 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (945)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 783 (945)
+ +. . ......+.+++|+|||+.+++..
T Consensus 133 --------------------------------~------------p~------~---~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 133 --------------------------------G------------PR------P---EQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp --------------------------------C------------SS------T---TCSSCCEEEEEECTTSCEEEEET
T ss_pred --------------------------------C------------CC------c---cccCCCceEEEECCCCcEEEEeC
Confidence 0 00 0 00334678899999999555555
Q ss_pred ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccC
Q 002264 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT 861 (945)
Q Consensus 784 ~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~ 861 (945)
.++.|.+|++.. .+........ ... ....+..++|+|||+++++++ ++.|.+|++..
T Consensus 160 ~~~~v~~~~~~~-----~g~~~~~~~~-------------~~~---~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 160 GSDKVYVYNVSD-----AGQLSEQSVL-------------TME---AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp TTTEEEEEEECT-----TSCEEEEEEE-------------ECC---TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCEEEEEEECC-----CCcEEEeeeE-------------EcC---CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 588999998752 1111110000 000 223567899999999776654 67899999874
Q ss_pred --ceE--EEEecCCC------CCeeEEEeecCCCceE-EEeecCceEEEEeccc-c--eEEEEecCCCcceeEEEecCCc
Q 002264 862 --FKV--MTTFMSPP------PASTFLAFHPQDNNII-AIGTEDSTIHIYNVRV-D--EVKSKLKGHQKRITGLAFSTSL 927 (945)
Q Consensus 862 --~~~--~~~~~~h~------~~i~~l~~s~~~~~~l-asg~~dg~v~vwd~~~-~--~~~~~l~~h~~~V~~l~~s~dg 927 (945)
++. +..+.... ..+..++|+| +|++| ++...++.|.+|++.. + +.+..+..+...+.+++|+|||
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg 297 (347)
T 3hfq_A 219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE 297 (347)
T ss_dssp TTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS
T ss_pred CCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC
Confidence 443 23333222 3488999999 88866 5556689999999972 2 5666677777789999999999
Q ss_pred ceeeeecC-CceEEEEec
Q 002264 928 NILVSSGA-DAQVTLCVE 944 (945)
Q Consensus 928 ~~l~s~~~-Dg~i~vWdl 944 (945)
++|++++. ++.|.+|++
T Consensus 298 ~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 298 AFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp SEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEcCCCcEEEEEE
Confidence 98888765 489999965
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-19 Score=195.90 Aligned_cols=259 Identities=12% Similarity=0.086 Sum_probs=175.5
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE--
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-- 422 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la-- 422 (945)
..+.++++++++. ++++|+.++ |+||+........... .+.. ............|...|.+++|+|+|++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 588888887 8998864321100000 0000 000000011223667899999999999999
Q ss_pred --EEECCCcEEEEEccCC--------cccccceeeccccccEEEEEEecC-CCeeEEEEEeCCCcEEEEe-CCCceEEEe
Q 002264 423 --VAFTKHLIQLYSYAGS--------NDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 423 --s~~~dg~i~vwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~~i~vwd-~~~~~~~~~ 490 (945)
+|+.|+.|++||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++|| .++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999999765 222233456789999999999998 56 899999999999999 777777677
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-------CCeEEEEEEcCCCCEEEEEeecC---
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSK--- 560 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~--- 560 (945)
.+|...|.+++|+| +|++|++|+.||.|++||++ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 189 ~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 78999999999987 56899999999999999988 4444444333 22799999999888877655421
Q ss_pred CCCceEEEEeCCCCc-----eeeEec-------cccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 002264 561 DGDSFLVEWNESEGT-----IKRTYA-------GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD 615 (945)
Q Consensus 561 d~~~~i~iwd~~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 615 (945)
+....+++|++...+ ....+. +... ....+..-++.+++++++ ..+.|.++...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEec
Confidence 111348999998642 111111 1111 122233336667777765 44456666543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=223.18 Aligned_cols=310 Identities=11% Similarity=0.075 Sum_probs=208.3
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCc---cEEEEEEcCCCCEEEEEE
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~i~~s~~g~~las~~ 425 (945)
.++|+|||+ +++++ .|++|++||+.+++... ++.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYT-------------------ILSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEE-------------------EECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEE-------------------EEccccccccceeeEEECCCCCeEEEEe
Confidence 679999996 56655 59999999999887542 1223322 488999999999999987
Q ss_pred C---------CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe-cCCC
Q 002264 426 T---------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHE 494 (945)
Q Consensus 426 ~---------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-~~~~ 494 (945)
. ++.|++||+++++.+... .+ ...+.+++|||||+ .|+.++ |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998752111 12 24688999999999 677665 78999999 666654322 2333
Q ss_pred CCE-----------------EEEEeeecCCccEEEEEEcCC----------------------------------eEEEE
Q 002264 495 APV-----------------YSICPHHKENIQFIFSTAIDG----------------------------------KIKAW 523 (945)
Q Consensus 495 ~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iw 523 (945)
..| .+++|+| ||+.|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 322 3788876 678999887652 78899
Q ss_pred EccCCCee--EE------ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEe----CCCCceeeEe----ccccCcc
Q 002264 524 LYDTMGSR--VD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN----ESEGTIKRTY----AGFRKKS 587 (945)
Q Consensus 524 d~~~~~~~--~~------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd----~~~~~~~~~~----~~~~~~~ 587 (945)
|+.++... .. +..+...+..++|+||++.+++.....++...|.+|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99876642 12 2346668899999999876666443223345699999 8887766555 23333 3
Q ss_pred eE-----EEEEcCCCCEEEE--EECCC--cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC-----CcE
Q 002264 588 NG-----VVQFDTTQNHFLA--VGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGF 653 (945)
Q Consensus 588 ~~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i 653 (945)
+. .+.|+|+|+.++. ...+| .|++||+.+++. ..+..+ ...+..+.++ +++.++..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 44 6889999986655 33455 577778877763 344332 2256777777 88888777665 788
Q ss_pred EEEECCC--CccccccccCCccccccCcceeeeecccccceec
Q 002264 654 KILANAI--GLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 654 ~iw~~~~--~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
++|.+.. +....+.+... .......+..+.|+|+|+.++.
T Consensus 385 ~l~~~~~~~g~~~~~~l~~~-~~~~~~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 385 NIYRISIGSYPPSKKCVTCH-LRKERCQYYTASFSDYAKYYAL 426 (719)
T ss_dssp EEEEEECSSSSCCEEESSTT-TTTTTBCBEEEEECGGGSSEEE
T ss_pred EEEEEeCCCCCCCceeccCc-cCCCCCceEEEEECCCCCEEEE
Confidence 8998754 21111111110 0001223567899999998774
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=214.06 Aligned_cols=236 Identities=10% Similarity=0.031 Sum_probs=159.7
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccc---cEEEEEEecCCCeeEEEEEeC---------CCcEE
Q 002264 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGD---------DKLIK 478 (945)
Q Consensus 411 ~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~~~l~s~s~---------d~~i~ 478 (945)
+++|+|||++++++ .|+.|++||+.+++... .+.+|.. .+.+++|||||+ +|++++. ++.|+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~SpDg~--~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT---ILSNRTMKSVNASNYGLSPDRQ--FVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE---EECHHHHHTTTCSEEEECTTSS--EEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE---EEccccccccceeeEEECCCCC--eEEEEecCceeEEeecceEEE
Confidence 78999999766554 69999999999987554 3334433 489999999999 6776665 78999
Q ss_pred EEe-CCCceE--EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCCCeE-------------
Q 002264 479 VWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWC------------- 541 (945)
Q Consensus 479 vwd-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i------------- 541 (945)
+|| .+++.+ ..+ ...+..++|+| ||+.|+++. ++.|++||+.++...... ..+...+
T Consensus 94 ~~d~~~g~~~~~~~l---~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 94 IYDLSNGEFVRGNEL---PRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEETTTTEECCSSCC---CSSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred EEECCCCccccceec---CcccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 999 555442 222 34678889877 667888875 789999999877654322 1211112
Q ss_pred ----EEEEEcCCCCEEEEEeecCC------------------------------CCceEEEEeCCCCcee---e-----E
Q 002264 542 ----TTMLYSADGSRLFSCGTSKD------------------------------GDSFLVEWNESEGTIK---R-----T 579 (945)
Q Consensus 542 ----~~~~~s~~~~~l~~~~~~~d------------------------------~~~~i~iwd~~~~~~~---~-----~ 579 (945)
.+++|+|||+.|++++.+.. ....|++||+.+++.. . .
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 48999999999999875321 1227899999987753 1 1
Q ss_pred eccccCcceEEEEEcCCCCEEEEEECC----CcEEEEE----CCCCeeEEEee--cCCCCCCcc-----EEEEcCCCCEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWD----MDNVNILTSTD--AEGGLPNLP-----RLRFSKEGNLL 644 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~--~~~~~~~v~-----~v~~sp~g~~l 644 (945)
+.++.. .+..++|+|+++.+++.... ..|++|| ..+++....+. ...+...+. .++|+|||+.+
T Consensus 248 ~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 248 IASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp HHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred CCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence 223333 67889999998766664433 2488999 87777654442 012222455 78999999966
Q ss_pred EE--EECCCc--EEEEECC
Q 002264 645 AV--TTADNG--FKILANA 659 (945)
Q Consensus 645 ~~--~~~dg~--i~iw~~~ 659 (945)
+. ...+|. |.+|++.
T Consensus 327 ~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 327 YKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp EEEEECTTSCEEEEEESSC
T ss_pred EEEEEccCCceEEEEEECC
Confidence 54 445554 4444443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-19 Score=190.41 Aligned_cols=294 Identities=9% Similarity=0.009 Sum_probs=195.8
Q ss_pred CCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc
Q 002264 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (945)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~ 584 (945)
.++.++++++.++.|.+||+.+++....+..+. ..+..++|+|+|+.++++.. .++.|.+||+.+++....+....
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEccc
Confidence 356889999999999999999887776666543 14678999999997776653 47899999999998887765432
Q ss_pred -----CcceEEEEEcCCCCEEEEEECC------------CcEEEEECCCCee---EEEeecCCCCCCccEEEEcCCCCEE
Q 002264 585 -----KKSNGVVQFDTTQNHFLAVGED------------SQIKFWDMDNVNI---LTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 585 -----~~~~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
...+..++|+|+|+++++++.+ +.|.+||+.+++. +..+..+ ..+.+++|+|+|+ +
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS-L 161 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-E
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-E
Confidence 2236678999999999998865 8999999988543 3333332 2578999999999 5
Q ss_pred EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccC
Q 002264 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (945)
++++ +.|.+||+.++. ....+........ ..+.+
T Consensus 162 ~~~~--~~i~~~d~~~~~-~~~~~~~~~~~~~------~~~~~------------------------------------- 195 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGK-YTVALPLRNWNRK------GYSAP------------------------------------- 195 (349)
T ss_dssp EEES--SSEEEECTTTCC-EEEEECSTTCCCT------TBCCC-------------------------------------
T ss_pred EEcc--CcEEEEeCCCCc-eeccccccccCCc------cccCc-------------------------------------
Confidence 5554 349999998773 2222211100000 00000
Q ss_pred CCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEE-----------EeeecCeEEEEee
Q 002264 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL-----------ALGSNGVQKLWKW 793 (945)
Q Consensus 725 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-----------~~~~dg~i~lw~~ 793 (945)
..+.+|.... ... .......+++++++.... .....+.+++|++
T Consensus 196 -----------~~~~~~~~~~---~~~-----------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 196 -----------DVLYFWPHQS---PRH-----------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp -----------BCCCCCCCCC---TTC-----------EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred -----------cceeeecCCC---cce-----------eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 1112222211 000 001223455665543221 1112233333332
Q ss_pred cCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC-CCceEEecCCCeEEEEeccCceEEEEecCCC
Q 002264 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFKVMTTFMSPP 872 (945)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~-dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~ 872 (945)
.. +...+.+++|+| ||++++++ ++.|.+||+.+++.+..+.. .
T Consensus 251 --------------------------------~~--~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~ 294 (349)
T 1jmx_B 251 --------------------------------AD--LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-D 294 (349)
T ss_dssp --------------------------------EE--CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-S
T ss_pred --------------------------------cc--CCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-C
Confidence 11 345678999999 99999988 88999999999998888763 3
Q ss_pred CCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCC
Q 002264 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 914 (945)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 914 (945)
..+.+++|+| ++++|++++.++.|++||+.+++.+..+..+
T Consensus 295 ~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 295 HTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCccceEECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 4578999999 8888888888999999999999988877644
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-18 Score=205.18 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=181.9
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-----ccEEEEEEcCCCCE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-----ISVSRVAWSPDGNY 420 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~i~~s~~g~~ 420 (945)
....++|+|||+ +++++ ||+|++||+.+++... ++.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCCE
Confidence 466899999998 57876 9999999999987542 133332 23345899999999
Q ss_pred EEEEECC---------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE-
Q 002264 421 VGVAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (945)
Q Consensus 421 las~~~d---------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~- 489 (945)
|+.++.+ +.+.+||+.+++.. .+..|.+.+...+|||||+ .|+.++ |+.|++|| ..+.....
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9998876 56779999998754 3556788899999999999 566664 78999999 55554321
Q ss_pred ecCCCCCE-----------------EEEEeeecCCccEEEEEEcCCe-EEEEEccCCCeeEEecCCCCeEEEEEEcCCCC
Q 002264 490 FEGHEAPV-----------------YSICPHHKENIQFIFSTAIDGK-IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (945)
Q Consensus 490 ~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 551 (945)
..++...+ ..+.|+| ||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333323 2367766 7788888876554 8888764221110 1233566777777664
Q ss_pred EEEEEeecCCCCceEEEEeCCC---Cc--eeeEecc-----ccCcceEEEEEcCCCCEEEEEEC----CCcEEEEECCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESE---GT--IKRTYAG-----FRKKSNGVVQFDTTQNHFLAVGE----DSQIKFWDMDNV 617 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~---~~--~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~ 617 (945)
.. ....|++||+.+ ++ ....+.. .+...+..++|+|+|+.++.... +..|++||+.++
T Consensus 224 ~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 224 VN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp CC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred cC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 31 244699999998 73 2222322 12336888999999987766542 347999999988
Q ss_pred e----eE--EEeecCCCCCCcc-----EEEEcCCCCEEE-EEEC-CC--cEEEEECCCC
Q 002264 618 N----IL--TSTDAEGGLPNLP-----RLRFSKEGNLLA-VTTA-DN--GFKILANAIG 661 (945)
Q Consensus 618 ~----~~--~~~~~~~~~~~v~-----~v~~sp~g~~l~-~~~~-dg--~i~iw~~~~~ 661 (945)
+ +. ..+....+...|. .++|+|||+.++ ..+. +| .|.+|+..++
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 7 22 1110011222333 789999999887 6654 33 4777777644
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-19 Score=207.50 Aligned_cols=261 Identities=13% Similarity=0.167 Sum_probs=192.7
Q ss_pred CccEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEeC---CCcEEEE
Q 002264 406 PISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~---d~~i~vw 480 (945)
..+|.+++|+|||++||+++. ||+++||++++++.. .+..|. ..+.+++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776543 344455 68999999999 5 6776664 5556676
Q ss_pred e--C--CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEE
Q 002264 481 E--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 481 d--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
. . .+... .+.... .+...+|+|++++..+++++.++ +.+||+.+++.......+. .+++|+|||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 4 55554 444332 34466888876655555555555 4599998876555443333 788999999999988
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC--cEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChhh
Confidence 764333378999999988765 4555544 678899999999999888888 8999999998877 554433 35666
Q ss_pred EE--------EcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 635 LR--------FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 635 v~--------~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
++ |+|||.++++++.|+.+++|++ + +..... .+.+.+++|+ +|+.++++.
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~~~--------~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVEAP--------QGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEECCC--------SSEEEEEEEE-TTEEEEEEE
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-CeeccC--------CCceEEEEec-CCEEEEEEc
Confidence 77 9999999999999999999999 4 322211 2357788999 888876543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=182.68 Aligned_cols=300 Identities=9% Similarity=0.057 Sum_probs=186.9
Q ss_pred CCCEEEEEeecCCCCceEEEEeC--CCCceeeEeccccCcceEEEEEcCCCCEEEEEECC----CcEEEEECCC--CeeE
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDN--VNIL 620 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~~ 620 (945)
...++++++.....++.|++|++ .+++....... .......++|+|++++|++++.+ +.|.+|++.. +...
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 34456666554444667888865 55655433322 23356679999999999999875 7999998765 5443
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~ 699 (945)
.......+......+++ +++++++++ .++.|.+|++...... ..... .+.. .|.
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~-----------~~~~--~g~--------- 145 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL-LPASD-----------VIEF--KGS--------- 145 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB-CSCSE-----------EEEC--CCC---------
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC-cccce-----------eEEc--cCC---------
Confidence 32222222224566777 888888776 5789999999754211 10000 0000 000
Q ss_pred CccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeE
Q 002264 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779 (945)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 779 (945)
+ .... ..+...+.+++|+|||+++
T Consensus 146 ------------------------------------~------------~~~~--------~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 146 ------------------------------------G------------PDKE--------RQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp ------------------------------------C------------SCTT--------TCSSCCEEEEEECTTSSEE
T ss_pred ------------------------------------C------------CCcc--------ccCCCcceEEEECCCCCEE
Confidence 0 0000 0033457889999999977
Q ss_pred EEeee-cCeEEEEeecCCCCCCCCc-eeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEE
Q 002264 780 LALGS-NGVQKLWKWHRNEQNPSGK-ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKIS 855 (945)
Q Consensus 780 ~~~~~-dg~i~lw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~ 855 (945)
++++. ++.+.+|++.........+ .... +........ +...+..++|+|||+++++++ ++.|.
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~ 236 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---PGSGPRHLIFNSDGKFAYLINEIGGTVI 236 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---TTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---CCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence 76664 7899999875422100000 0000 000000011 345577899999999887765 68899
Q ss_pred EEeccCceE--EEEec---CCCCCeeEEEeecCCCceEEEeec--CceEEEEecc--cce--EEEEecCCCcceeEEEec
Q 002264 856 LFNMMTFKV--MTTFM---SPPPASTFLAFHPQDNNIIAIGTE--DSTIHIYNVR--VDE--VKSKLKGHQKRITGLAFS 924 (945)
Q Consensus 856 iwd~~~~~~--~~~~~---~h~~~i~~l~~s~~~~~~lasg~~--dg~v~vwd~~--~~~--~~~~l~~h~~~V~~l~~s 924 (945)
+|++.+++. +..+. .+...+.+++|+| ++++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|+
T Consensus 237 v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s 314 (361)
T 3scy_A 237 AFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT 314 (361)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred EEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence 999987754 23332 3344578999999 8888866655 4899999996 454 4555554 5678899999
Q ss_pred CCcceeeeec-CCceEEEEecC
Q 002264 925 TSLNILVSSG-ADAQVTLCVEH 945 (945)
Q Consensus 925 ~dg~~l~s~~-~Dg~i~vWdl~ 945 (945)
|||++|++++ .++.|.+|+++
T Consensus 315 pdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 315 PNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp TTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEE
Confidence 9999888877 67899998653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-18 Score=185.63 Aligned_cols=269 Identities=14% Similarity=0.119 Sum_probs=184.1
Q ss_pred cccCCCCCcce--EEeecCCCcEEEEEEeCCCCeEEEEEeC--cCcEEEEEcCCCCcccccccccccccccCcccccccc
Q 002264 327 TWSLDDLPRTV--AVSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (945)
Q Consensus 327 ~~~~~~~~~~~--~~~~~h~~~V~~v~fsp~g~~llasgs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (945)
+|.++...+.. .....+...+..++|+|||+ +++++.. ++.|.+|++.+++.... ..+
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------~~~ 81 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------------NTV 81 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------EEE
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------eee
Confidence 55555433333 23455678899999999998 6666643 78999999976653210 112
Q ss_pred cCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCcccccceeecc---------ccccEEEEEEecCCCeeEEEEEe
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDA---------HVGAVNDLAFAYPNKLLCVVTCG 472 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~-~dg~i~vwd~~~~~~~~~~~~~~~---------h~~~v~~l~~s~~~~~~~l~s~s 472 (945)
..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|+|+ ++++..
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeC
Confidence 34567788999999999999888 678999999964333332222211 123488999999999 788888
Q ss_pred CCCcEEEEe-C-CCceE--EEecCC-CCCEEEEEeeecCCccEEEE-EEcCCeEEEEEccC--CCee--EEecCCC----
Q 002264 473 DDKLIKVWE-L-SGRKL--FNFEGH-EAPVYSICPHHKENIQFIFS-TAIDGKIKAWLYDT--MGSR--VDYDAPG---- 538 (945)
Q Consensus 473 ~d~~i~vwd-~-~~~~~--~~~~~~-~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~--~~~~--~~~~~~~---- 538 (945)
.++.|.+|+ . +++.. ..+..+ ...+..++|+| +|+++++ +..++.|.+|+++. +... ..+....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 899999999 5 45432 222222 33577889877 5675555 56788999999885 3221 1222211
Q ss_pred --CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-C--ceeeEeccccCcceEEEEEcCCCCEEEEEEC-CCcEEEE
Q 002264 539 --HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-G--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFW 612 (945)
Q Consensus 539 --~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw 612 (945)
..+..++|+|||++|+++.. +++.|.+|++.. + +.+..+..+.. .+..++|+|+|++|++++. ++.|.+|
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 45889999999998866554 478999999873 2 44444544333 5678999999999998885 4899999
Q ss_pred --ECCCCeeEE
Q 002264 613 --DMDNVNILT 621 (945)
Q Consensus 613 --d~~~~~~~~ 621 (945)
|..+++...
T Consensus 314 ~~d~~tg~l~~ 324 (347)
T 3hfq_A 314 ARDLTSGKLSL 324 (347)
T ss_dssp EECTTTCCEEE
T ss_pred EEeCCCCeEEe
Confidence 555666553
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-18 Score=186.58 Aligned_cols=296 Identities=11% Similarity=0.005 Sum_probs=193.2
Q ss_pred eEEeecCCCcEEE-----EEEeCCCCeEEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccccCCCccE
Q 002264 337 VAVSLHQGSTVIS-----MDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (945)
Q Consensus 337 ~~~~~~h~~~V~~-----v~fsp~g~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (945)
......|...+.. .+|||||++|++++..+| .|.+||+.+++... +..++...+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~ 83 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNT 83 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCc
Confidence 3344446666666 899999997444444367 48888988876542 234455555
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEE--EecCCCeeEEEEE----------------
Q 002264 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTC---------------- 471 (945)
Q Consensus 410 ~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~~~~~~~l~s~---------------- 471 (945)
..++|||||+.|+.++.++.|++||+.+++... .+..+...+.... +++++. +++..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHH
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchh
Confidence 577899999999999999999999999987544 2334445454444 489998 55532
Q ss_pred ------eCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCCC
Q 002264 472 ------GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 472 ------s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~ 538 (945)
+.+..|.+|| .+++ ...+..+...+..++|+|. +|+.|+.+..+ ..|.++|....... .+..+.
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~ 235 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA 235 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC
T ss_pred hhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC
Confidence 2456899999 5554 4555567777889998771 34677776653 36777776654433 333333
Q ss_pred --CeEEEEEEcCCCCEEEEEeecCCC-CceEEEEeCCCCceee--EeccccC--cceEEEEEcCCCCEEEEE--------
Q 002264 539 --HWCTTMLYSADGSRLFSCGTSKDG-DSFLVEWNESEGTIKR--TYAGFRK--KSNGVVQFDTTQNHFLAV-------- 603 (945)
Q Consensus 539 --~~i~~~~~s~~~~~l~~~~~~~d~-~~~i~iwd~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~l~~~-------- 603 (945)
..+..+.|+|||+.|+..+..... +..|++||+.+++... .+.++.. .......|+|+|+.|+..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 357889999999988776642211 2349999999887543 2322100 001113689999888764
Q ss_pred -ECCCcEEEEECCCCeeEEEeecCCCCC--------CccEEEEcCCCCEEEEEEC-CCcEEEEECC
Q 002264 604 -GEDSQIKFWDMDNVNILTSTDAEGGLP--------NLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (945)
Q Consensus 604 -~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~ 659 (945)
..+..|++||+.+++............ .+.+++|+|||+.|+..+. +|...||.+.
T Consensus 316 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 456689999999887654433322100 3678899999998887764 6666666553
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-18 Score=187.18 Aligned_cols=275 Identities=11% Similarity=0.052 Sum_probs=185.2
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC-CccEEEEEEcCCCCEEEE-EEC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGV-AFT 426 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~s~~g~~las-~~~ 426 (945)
.+++++++. ++++++.+++|.+||..+++.+.. +..+ ...+..++|+|+|+++++ +..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 456788776 689999999999999998876532 1112 125778999999997654 456
Q ss_pred CCcEEEEEccCCcccccceeeccc-----cccEEEEEEecCCCeeEEEEEeCC------------CcEEEEe-CCCc---
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWE-LSGR--- 485 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h-----~~~v~~l~~s~~~~~~~l~s~s~d------------~~i~vwd-~~~~--- 485 (945)
++.|.+||+.+++...... + .+ ...+.+++|+|+|+ ++++++.+ +.|.+|| .+++
T Consensus 64 ~~~i~~~d~~t~~~~~~~~-~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHAN-L-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TTEEEEEETTTTEEEEEEE-S-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CCcEEEEeCCCCcEEEEEE-c-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 8899999999887654221 1 12 23478899999999 66766654 8999999 5533
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC---------------------C---eE
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------------H---WC 541 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~i 541 (945)
.+..+.. ...+.+++|++ +|+ +++++ +.|.+||+.+++....+.... . ..
T Consensus 140 ~~~~~~~-~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 140 PVRTFPM-PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp CSEEEEC-CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred eeeeccC-CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 2333433 34578888876 556 55544 349999998887766554332 0 33
Q ss_pred EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeeE
Q 002264 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
..+++++++........ ....+..+|..+++....-.......+..++++| ++++++++ ++.|++||+.+++.+
T Consensus 214 ~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~ 288 (349)
T 1jmx_B 214 YTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI 288 (349)
T ss_dssp EEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE
T ss_pred eeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE
Confidence 45666665432211100 0112223555554432211111223577899999 99999888 889999999999988
Q ss_pred EEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..+.... .+.+++|+|+|++|++++.++.|.+||..++
T Consensus 289 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 289 KAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 8876533 4689999999999988888999999999887
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-17 Score=176.84 Aligned_cols=271 Identities=14% Similarity=0.168 Sum_probs=181.8
Q ss_pred EEEEEe----CcCcEEEEEcC--CCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC----C
Q 002264 359 LLLVGS----SNGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----H 428 (945)
Q Consensus 359 llasgs----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d----g 428 (945)
.+++|+ .++.|.+|++. +++.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 456664 35689999774 4443210 112 56677889999999999999886 7
Q ss_pred cEEEEEccCC-cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEE------EecC--------
Q 002264 429 LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF------NFEG-------- 492 (945)
Q Consensus 429 ~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~------~~~~-------- 492 (945)
.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+|+ .....+. ...+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999998763 223333334445566778888 7773 344444688999999 4332221 1111
Q ss_pred CCCCEEEEEeeecCCccEEEEEE-cCCeEEEEEccCCCe------e-------EEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 493 HEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS------R-------VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
+...+.+++|+| +|+++++++ .++.|.+|+++.... . ............++|+|||++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123357888877 567665554 589999999886542 1 122233456789999999998887763
Q ss_pred cCCCCceEEEEeCCCCcee--eEecccc--CcceEEEEEcCCCCEEEEEEC--CCcEEEEECC--CCe--eEEEeecCCC
Q 002264 559 SKDGDSFLVEWNESEGTIK--RTYAGFR--KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMD--NVN--ILTSTDAEGG 628 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 628 (945)
.++.|.+||+.+++.. ..+.... ......++|+|+|++|+++.. ++.|.+|++. ++. .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 3788999999877542 2222211 123568999999999988775 4899999986 455 3334433 2
Q ss_pred CCCccEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 002264 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~ 659 (945)
..+.+++|+|||++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 3678999999999998888 57899997654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-18 Score=186.34 Aligned_cols=284 Identities=10% Similarity=0.006 Sum_probs=188.1
Q ss_pred ccCCCccEEE-----EEEcCCCCEEEEEEC-CC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC
Q 002264 402 FKDVPISVSR-----VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (945)
Q Consensus 402 ~~~h~~~V~~-----i~~s~~g~~las~~~-dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~ 473 (945)
+..|...... .+|||||++|+.++. +| .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4556555555 899999999999887 66 48888998876544 3345555566788999999 7888888
Q ss_pred CCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE----------------------cCCeEEEEEccCCCe
Q 002264 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------------------IDGKIKAWLYDTMGS 530 (945)
Q Consensus 474 d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~ 530 (945)
++.|++|| .+++....+..+...+....|..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 7777666666666656555554456777776432 346799999988765
Q ss_pred eEEecCCCCeEEEEEEcC-CCCEEEEEeecCC--CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC-C
Q 002264 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKD--GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-D 606 (945)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d 606 (945)
.. +..+...+..+.|+| ||+.|+.+..... ....|.++|...+.............+....|+|+|+.|+..+. +
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 44 334455688999999 9999988764211 14478889987665443333222224667899999998766542 2
Q ss_pred C----cEEEEECCCCeeEEEeecCCCC---CCccEEEEcCCCCEEEEE---------ECCCcEEEEECCCCccccccccC
Q 002264 607 S----QIKFWDMDNVNILTSTDAEGGL---PNLPRLRFSKEGNLLAVT---------TADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 607 g----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
+ .|++||+.+++........... .....++|+|||+.|+.. ..+..|++||+.++.. ..+..
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~ 337 (388)
T 3pe7_A 260 GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVAR 337 (388)
T ss_dssp TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--EEEEE
T ss_pred CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEecc
Confidence 2 3999999998754433322200 012334799999988854 4466899999988732 22222
Q ss_pred Cccc------cccCcceeeeeccccccee
Q 002264 671 PPFE------ALRTPIESVALKVSASSAV 693 (945)
Q Consensus 671 ~~~~------~~~~~i~~v~~s~~g~~l~ 693 (945)
+... .....+..++|+|||+.++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~ 366 (388)
T 3pe7_A 338 HDTSWKVFEGDRQVTHPHPSFTPDDKQIL 366 (388)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred ccCcccccccccccCCCCccCCCCCCEEE
Confidence 2110 0001256678899988775
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-17 Score=198.51 Aligned_cols=366 Identities=9% Similarity=0.008 Sum_probs=222.0
Q ss_pred ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE-----EEEEeeecCCccEEEEEEcC--------
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV-----YSICPHHKENIQFIFSTAID-------- 517 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~s~~~d-------- 517 (945)
....+++|+|||+ +++++ |++|++|| .++++...+.+|.... ..+.|+| ||++|+.++.+
T Consensus 17 ~~~~~~~w~~dg~--~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 17 LKLYSLRWISDHE--YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCCEEECSSSE--EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCE
T ss_pred ccccccEECCCCc--EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECCeeeEEEcc
Confidence 3466899999998 77876 99999999 8888877777776432 2355655 77899988876
Q ss_pred -CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec-cccC----------
Q 002264 518 -GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFRK---------- 585 (945)
Q Consensus 518 -g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~-~~~~---------- 585 (945)
+.+.+||+.+++.. .+..+...+..++|||||+.|+.+. ++.|++||+.+++..+... ++..
T Consensus 91 ~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-----~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 91 TASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp EEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred ceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-----CCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence 56679999887654 3455566799999999999999885 7789999998887554322 2221
Q ss_pred ------cceEEEEEcCCCCEEEEEECC-CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 586 ------KSNGVVQFDTTQNHFLAVGED-SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 586 ------~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.....+.|+|||+.|+.++.| +.+.+|++...... ..+...+..+.+.+.|.. .....|++||+
T Consensus 165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~-----~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~ 235 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE-----SLQYPKTVRVPYPKAGAV----NPTVKFFVVNT 235 (740)
T ss_dssp HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST-----TCSSCEEEEEECCBTTSC----CCEEEEEEEET
T ss_pred ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC-----CCCCCcceeecCCCCcCc----CCeeEEEEEEC
Confidence 011347899999999888744 44777775321100 012234556666666542 11236888888
Q ss_pred CC---Ccc-ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCC
Q 002264 659 AI---GLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (945)
Q Consensus 659 ~~---~~~-~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (945)
.+ +.. ....+..
T Consensus 236 ~~~~~~~~~~~~~l~~---------------------------------------------------------------- 251 (740)
T 4a5s_A 236 DSLSSVTNATSIQITA---------------------------------------------------------------- 251 (740)
T ss_dssp TSCCSSSCCCEEEECC----------------------------------------------------------------
T ss_pred CCCCCCCcceEEEecC----------------------------------------------------------------
Confidence 76 410 0000000
Q ss_pred CCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee----cCeEEEEeecCCCCCCCCceeeeecc
Q 002264 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS----NGVQKLWKWHRNEQNPSGKATASAVP 810 (945)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~----dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (945)
+. .+ .++...+..++|+|||+.++.... +..|.+||+...... .
T Consensus 252 --------------~~-----~~---~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~----~------ 299 (740)
T 4a5s_A 252 --------------PA-----SM---LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR----W------ 299 (740)
T ss_dssp --------------CH-----HH---HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE----E------
T ss_pred --------------Cc-----cC---CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc----c------
Confidence 00 00 014556788999999996665543 236777776432200 0
Q ss_pred ccccCCCcccccccccCCCcCCcee-----EEeecCCCceEE-ecC--CC--eEEEEeccCceEEEEecCCCCCeeEEEe
Q 002264 811 QHWLPSSGLLMANDVAGVNLEEAVP-----CIALSKNDSYVM-SAT--GG--KISLFNMMTFKVMTTFMSPPPASTFLAF 880 (945)
Q Consensus 811 ~~~~~~~~~~~~~~l~~~~~~~~i~-----~l~~s~dg~~la-~~s--d~--~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 880 (945)
.. .... .+....+...+. .++|||||+.++ ..+ +| .|.+||+.+++.. .+......+..+..
T Consensus 300 ---~~---~~~~-~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~ 371 (740)
T 4a5s_A 300 ---NC---LVAR-QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA 371 (740)
T ss_dssp ---EE---CGGG-CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE
T ss_pred ---ce---eEEE-EeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE
Confidence 00 0000 010001333333 789999999877 665 34 4999999877654 44434455666543
Q ss_pred ecCCCceEEEeec----Cc--eEEEEecccceEEEEecC----CCcceeEEEecCCcceeeeecCC---ceEEEEe
Q 002264 881 HPQDNNIIAIGTE----DS--TIHIYNVRVDEVKSKLKG----HQKRITGLAFSTSLNILVSSGAD---AQVTLCV 943 (945)
Q Consensus 881 s~~~~~~lasg~~----dg--~v~vwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~l~s~~~D---g~i~vWd 943 (945)
++++.+++++.. .+ .|+..++.++.....+.. ....+..+.|||||++++..... ..+.+++
T Consensus 372 -~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~ 446 (740)
T 4a5s_A 372 -LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHS 446 (740)
T ss_dssp -ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred -EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEE
Confidence 424555555554 23 455555555544334442 34678899999999987644322 2455554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-17 Score=173.75 Aligned_cols=313 Identities=9% Similarity=0.095 Sum_probs=209.0
Q ss_pred CccEEEEEE------cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec------CCCCceEEEEeCCCC
Q 002264 507 NIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEG 574 (945)
Q Consensus 507 ~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~~~ 574 (945)
+++++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++... ++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445666554 3779999999888877766655444 89999999999987631 112567999999999
Q ss_pred ceeeEecccc-----CcceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeeEEE-eecCCCCCCccEEEEcCCC-CEEE
Q 002264 575 TIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFSKEG-NLLA 645 (945)
Q Consensus 575 ~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~sp~g-~~l~ 645 (945)
+.+..+.... ......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 8888776431 123556899999999999873 68999999999998887 65432 2336677865 6778
Q ss_pred EEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCC
Q 002264 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (945)
+.+.||.+.+|+............
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-------------------------------------------------------- 191 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-------------------------------------------------------- 191 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE--------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeecc--------------------------------------------------------
Confidence 888999999998864212110000
Q ss_pred CCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCcee
Q 002264 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (945)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (945)
...+|+... .. ..+.+++++..++..+.++.+.++|+...... ..
T Consensus 192 -----------~~~~~~~~~-------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~----~~ 236 (361)
T 2oiz_A 192 -----------SKQMFSVKD-------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK----VD 236 (361)
T ss_dssp -----------CCCCSCTTT-------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE----EE
T ss_pred -----------ccceEcCCC-------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce----ec
Confidence 001111110 00 01112455555655666777777775322100 00
Q ss_pred eeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC------------CCeEEEEeccCceEEEEecCCCC
Q 002264 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT------------GGKISLFNMMTFKVMTTFMSPPP 873 (945)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s------------d~~i~iwd~~~~~~~~~~~~h~~ 873 (945)
..|+........... .......++|+||++.+.++. .++|.+||+.+++.+.++..+.
T Consensus 237 -----~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 237 -----GPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp -----EEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred -----ccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 001111100000000 011122378999988776642 2379999999999999998876
Q ss_pred CeeEEEeecCCCceEEEeecCceEEEEecccc--eEEEEecCCCcceeEEEecCCcce
Q 002264 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLNI 929 (945)
Q Consensus 874 ~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~~ 929 (945)
+.+++|+| ++++|++++. ++|.|||..++ +.+.++..+......++++|||+.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~~ 361 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGGT 361 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSCC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCCC
Confidence 99999999 8889988886 99999999999 999998777788899999999863
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-17 Score=175.61 Aligned_cols=246 Identities=10% Similarity=0.056 Sum_probs=170.7
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEcc-CCcccccceeeccccccEEEEEEecCCCeeEEEEEe------------
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG------------ 472 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s------------ 472 (945)
...+..++|+|||++|++++.+ .|.+|++. +++..... ....+ +.+.+++|+|+|+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467889999999999999888 89999997 66543211 11111 235568999999843344543
Q ss_pred -CCCcEEEEe-C-CCceEEEec----CCCCCEEEEEeeecCCccEEEEEEc-CCeEEEEEcc-CCCeeE--EecC--CCC
Q 002264 473 -DDKLIKVWE-L-SGRKLFNFE----GHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYD-TMGSRV--DYDA--PGH 539 (945)
Q Consensus 473 -~d~~i~vwd-~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~~--~~~~--~~~ 539 (945)
.++.+.+|+ . +++....+. .+...+.+++|+| +|++++++.. ++.|++||++ +++... .+.. +..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 689999999 4 566544443 2456789999977 5677777654 6899999998 555432 2332 355
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC--CCceee---Eecccc----C-c-------ceEEEE-EcCCCCEEE
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKR---TYAGFR----K-K-------SNGVVQ-FDTTQNHFL 601 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~--~~~~~~---~~~~~~----~-~-------~~~~~~-~~~~~~~l~ 601 (945)
.+..++|+|||++++++.. .++.+.+|++. +++... .+.... . . .+..++ |+|+|++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 6899999999999988763 36788998754 565421 222110 1 1 367799 999999988
Q ss_pred EEECC-C-----cEEEEECC-CCeeEEE---eecCCCCCCccEEEEcC---CCCEEEEEECC-CcEEEEECCCC
Q 002264 602 AVGED-S-----QIKFWDMD-NVNILTS---TDAEGGLPNLPRLRFSK---EGNLLAVTTAD-NGFKILANAIG 661 (945)
Q Consensus 602 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~sp---~g~~l~~~~~d-g~i~iw~~~~~ 661 (945)
+++.+ + .|.+|++. +++.... ...+. ..+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 77632 2 89999996 5665432 22222 2467899999 89999999864 89999998654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-17 Score=181.87 Aligned_cols=244 Identities=13% Similarity=0.019 Sum_probs=172.5
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc----------ccc--ceeeccccccEEEEEEecCCCeeEEE----
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND----------LRQ--HSQIDAHVGAVNDLAFAYPNKLLCVV---- 469 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~----------~~~--~~~~~~h~~~v~~l~~s~~~~~~~l~---- 469 (945)
...++.+++++++.++++++.++ +++|+...... +.. ......|...|.+++|+|+|+ +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL--TLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC--EEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC--EEEEEEe
Confidence 34678899999999999999988 89987642100 000 000113567899999999999 677
Q ss_pred EEeCCCcEEEEe-CCC--------c---eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC
Q 002264 470 TCGDDKLIKVWE-LSG--------R---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (945)
Q Consensus 470 s~s~d~~i~vwd-~~~--------~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (945)
+|+.|+.|++|| .++ + .+..+.+|...|.+++|+|. ++.+|++++.||+|++||++++........+
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 788999999999 433 1 24566789999999999986 2579999999999999999988666666667
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC------cceEEEEEcCCCCEEEEEE-CCCc--
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVG-EDSQ-- 608 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~-~dg~-- 608 (945)
...|.+++|+|+|++|++++. ++.|++||.+ ++....+..+.. ..+.+++|++++.++++.+ .+|.
T Consensus 192 ~~~v~~v~wspdg~~lasgs~----dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQ----NGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEET----TSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CCceeEEEEcCCCCEEEEEcC----CCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 788999999999999999985 8999999998 565555544321 2578899999877765533 4433
Q ss_pred ----EEEEECCCCe-----eEEEeecC-----CCCCCccEEEEcCCCCEEEEEEC-CCcEEEEEC
Q 002264 609 ----IKFWDMDNVN-----ILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (945)
Q Consensus 609 ----i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~ 658 (945)
+++|++.... ....+... ....+-..+.+-++.+++++++. .+.|.++..
T Consensus 267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 8999998642 11222111 11112223333366677666655 445666654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-17 Score=176.24 Aligned_cols=270 Identities=9% Similarity=0.052 Sum_probs=173.7
Q ss_pred ceEEEEe--CCCCceeeE--eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC-CCeeEEEeecCCCCCCccEEEEc
Q 002264 564 SFLVEWN--ESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 564 ~~i~iwd--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
+.|++|+ ..+++.... ........+..++|+|+++++++++.+ .|.+|++. +++.......... +....++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~s 91 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDAD 91 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTT
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEEC
Confidence 3566655 456654322 211111246679999999999999887 99999997 7876544332211 135679999
Q ss_pred CCCCE--EEEEE-------------CCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccc
Q 002264 639 KEGNL--LAVTT-------------ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (945)
Q Consensus 639 p~g~~--l~~~~-------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~ 703 (945)
|||++ +++++ .+|.+.+|++.........+.
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~---------------------------------- 137 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ---------------------------------- 137 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE----------------------------------
T ss_pred CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe----------------------------------
Confidence 99994 44542 577888888753211110000
Q ss_pred cccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEee
Q 002264 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (945)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 783 (945)
.+ .. .+...+.+++|+|||++++++.
T Consensus 138 ------------------------------------~~--------------~~----~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 138 ------------------------------------NY--------------EY----QENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp ------------------------------------EE--------------EC----CTTCCEEEEEECTTSSEEEEEE
T ss_pred ------------------------------------eE--------------Ee----CCCCcceEEEECCCCCEEEEEc
Confidence 00 00 0334678899999999887765
Q ss_pred e-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEecc
Q 002264 784 S-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM 860 (945)
Q Consensus 784 ~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~ 860 (945)
. ++.|++|++.. .++.... . .+....+...+..++|+|||+++++++ ++.|.+|+++
T Consensus 164 ~~~~~v~~~~~~~-----~g~~~~~--------------~-~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 164 LTANKLWTHRKLA-----SGEVELV--------------G-SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TTTTEEEEEEECT-----TSCEEEE--------------E-EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEEECC-----CCCEEEe--------------e-eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 4 67899998741 1111100 0 011000245688999999999988776 5789999765
Q ss_pred --CceEEE------Eec----CCCC------CeeEEE-eecCCCceEEEeecCc------eEEEEecc-cceEEE---Ee
Q 002264 861 --TFKVMT------TFM----SPPP------ASTFLA-FHPQDNNIIAIGTEDS------TIHIYNVR-VDEVKS---KL 911 (945)
Q Consensus 861 --~~~~~~------~~~----~h~~------~i~~l~-~s~~~~~~lasg~~dg------~v~vwd~~-~~~~~~---~l 911 (945)
+++... .+. +|.. .+..++ |+| ||++|+++..+. +|.+|++. +|+... ..
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~ 302 (365)
T 1jof_A 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred CCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence 555421 222 1222 588999 999 888887766433 89999996 666543 23
Q ss_pred cCCCcceeEEEecC---CcceeeeecCC-ceEEEEec
Q 002264 912 KGHQKRITGLAFST---SLNILVSSGAD-AQVTLCVE 944 (945)
Q Consensus 912 ~~h~~~V~~l~~s~---dg~~l~s~~~D-g~i~vWdl 944 (945)
..+...+..++|+| ||++|++++.+ +.|.||++
T Consensus 303 ~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 34556678899999 89999998864 89999986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-17 Score=179.05 Aligned_cols=285 Identities=10% Similarity=-0.027 Sum_probs=182.4
Q ss_pred EEEEEEeCCCCeEEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 347 VISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 347 V~~v~fsp~g~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
+.+++|||||++++++...++ .|.+||+.+++... +..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 778899999997555554433 68888988775431 112222223347899999999999
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEE-------------------EEEecCCCeeEEEEE-----eCCCcEEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-------------------LAFAYPNKLLCVVTC-----GDDKLIKVW 480 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~-------------------l~~s~~~~~~~l~s~-----s~d~~i~vw 480 (945)
+.++.|++||+.+++... ....+...... +.|+|+++ .++.+ ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEE
Confidence 999999999999876433 22223332222 35677777 33332 456789999
Q ss_pred e-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCC-CCeEEEEEEcCCCCE
Q 002264 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSR 552 (945)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~ 552 (945)
| .+++.. .+..+...+..+.|+|. ++..|+..+.+ ..|.+||+............ ...+..+.|+|||+.
T Consensus 174 d~~~g~~~-~~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELE-VIHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEE-eeccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 555544 34456777888998772 34556655543 35788887655433322211 236888999999998
Q ss_pred EEEEeecCC-CCceEEEEeCCCCceeeEeccccCcceEEEEEcC-CCCEEEEEE----------------CCCcEEEEEC
Q 002264 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVG----------------EDSQIKFWDM 614 (945)
Q Consensus 553 l~~~~~~~d-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~ 614 (945)
|+..+.... ..+.|++||+.+++........ ... +.|+| +|+.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 887764211 1245999999988765433221 123 88999 999888765 3478999999
Q ss_pred CCCeeEEEeecCCCC--------CCccEEEEcCCCCEEEEEEC-CCcEEEE--ECCCC
Q 002264 615 DNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKIL--ANAIG 661 (945)
Q Consensus 615 ~~~~~~~~~~~~~~~--------~~v~~v~~sp~g~~l~~~~~-dg~i~iw--~~~~~ 661 (945)
.+++........... ..+..++|+|||+.|+.++. ++...+| ++.++
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 888754433222100 02567899999999887775 4554444 44444
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=182.27 Aligned_cols=320 Identities=11% Similarity=0.035 Sum_probs=201.0
Q ss_pred EEccCCCeeEEecCCCCe-----EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCC
Q 002264 523 WLYDTMGSRVDYDAPGHW-----CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (945)
.|..++.....+..+... +..++|+|||++|+.... .++...|++||+.+++......+... ....+.|+|+|
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~-~~g~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGD-FDGNRNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEEC-TTSSCEEEEEETTTTEEEECCCSSCB-CTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEe-cCCCceEEEEECCCCcEEEeecCCCC-ccccceECCCC
Confidence 355666555555444322 567789999999888764 23456899999998876554333221 23337899999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCcccccc
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
+.|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999999999999999887666554321 7778888877666555544431
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
.+.++|+|+.++.... .....+..|.+|++.. +....+.
T Consensus 146 ----~~~~spdg~~~~~~~~--------------------------------~~~~~~~~l~~~d~~~----g~~~~~~- 184 (396)
T 3c5m_A 146 ----KRDWQPLTSWEKFAEF--------------------------------YHTNPTCRLIKVDIET----GELEVIH- 184 (396)
T ss_dssp ----GGGCCCCCSHHHHHHH--------------------------------HHTCCCEEEEEEETTT----CCEEEEE-
T ss_pred ----ccccCCCCcceeeeee--------------------------------ccCCCcceEEEEECCC----CcEEeec-
Confidence 2356677766542110 0012335677777753 2222221
Q ss_pred CCCCCCccceEEEEEec-CCCeEEEeeecC------eEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCc
Q 002264 758 PESTDTSSKVVRLLYTN-SAVGLLALGSNG------VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~-dg~~l~~~~~dg------~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 830 (945)
. +...+..+.|+| +|+.|+.++.++ .|.+|++ .++.... +.....
T Consensus 185 -~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~----------------------~~~~~~~--l~~~~~ 236 (396)
T 3c5m_A 185 -Q---DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNE----------------------DGSNVRK--IKEHAE 236 (396)
T ss_dssp -E---ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEET----------------------TSCCCEE--SSCCCT
T ss_pred -c---CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEEC----------------------CCCceeE--eeccCC
Confidence 1 445788999999 888777766532 3444443 2222111 111001
Q ss_pred CCceeEEeecCCCceEEecC-C-----CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee------------
Q 002264 831 EEAVPCIALSKNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT------------ 892 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s-d-----~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~------------ 892 (945)
...+..++|||||++|+.++ + +.|++||+.+++....... . ... +.|+|.+++++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC---------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 23577899999999888775 2 3399999988865443321 1 233 889983455776654
Q ss_pred ----cCceEEEEecccceEEEEecCCCc-----------ceeEEEecCCcceeeeecC-CceEEEEec
Q 002264 893 ----EDSTIHIYNVRVDEVKSKLKGHQK-----------RITGLAFSTSLNILVSSGA-DAQVTLCVE 944 (945)
Q Consensus 893 ----~dg~v~vwd~~~~~~~~~l~~h~~-----------~V~~l~~s~dg~~l~s~~~-Dg~i~vWdl 944 (945)
.++.|++||+.+++. ..+..+.. .+..++|+|||++|+.++. ++...||.+
T Consensus 314 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp -CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 347899999988864 34444544 2677899999998887654 566666643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-16 Score=166.72 Aligned_cols=294 Identities=9% Similarity=0.074 Sum_probs=195.1
Q ss_pred CCCeEEEEE-----eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC---
Q 002264 355 SHQTLLLVG-----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT--- 426 (945)
Q Consensus 355 ~g~~llasg-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~--- 426 (945)
++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|+++..
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 556544443 2478999999988876531 3334444 8999999999998863
Q ss_pred -------CCcEEEEEccCCcccccceeecc---ccccEEEEEEecCCCeeEEEEEe--CCCcEEEEe-CCCceEEE-ecC
Q 002264 427 -------KHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFN-FEG 492 (945)
Q Consensus 427 -------dg~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd-~~~~~~~~-~~~ 492 (945)
++.|.+||..+++.+..+..... +......++|+|||+ +++++. .+++|.+|| .+++.+.. +..
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 56799999998876654322211 234567899999999 565554 368999999 77777776 542
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-E------ecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-D------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.. ...+.+.|.+ ...+++.+.||.+.+|++....... . +.....+ ..+.+++++..++..+. ++.
T Consensus 151 -~~-~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~~ 222 (361)
T 2oiz_A 151 -AG-CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YGN 222 (361)
T ss_dssp -TT-EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TSE
T ss_pred -CC-cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CCe
Confidence 22 2234455543 3678889999999999986533322 1 1111111 12334567777766654 678
Q ss_pred EEEEeCCCCce--eeEecccc------C---cceEEEEEcCCCCEEEEEEC-----------CCcEEEEECCCCeeEEEe
Q 002264 566 LVEWNESEGTI--KRTYAGFR------K---KSNGVVQFDTTQNHFLAVGE-----------DSQIKFWDMDNVNILTST 623 (945)
Q Consensus 566 i~iwd~~~~~~--~~~~~~~~------~---~~~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~ 623 (945)
+.++|+..... ...+.... . .....++++|+++.++++.. .+.|.+||+.+++.+..+
T Consensus 223 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i 302 (361)
T 2oiz_A 223 VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI 302 (361)
T ss_dssp EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE
Confidence 99999875532 22211100 0 01123789999888887653 347999999999999998
Q ss_pred ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC--ccccccccCCccccccCcceeeeeccccc
Q 002264 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG--LRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
..+. +.+++|+|||++|++++. +.|.+||..++ +.. ..+... ......++++|+|+
T Consensus 303 ~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~-~~i~~~-----G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 303 PGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL-RTIEGA-----AEASLQVQFHPVGG 360 (361)
T ss_dssp ECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE-EEETTS-----CSSEEEEEECCCSC
T ss_pred ecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee-EEeccC-----CCCcEEEEecCCCC
Confidence 7654 799999999999998887 99999999887 432 322111 11245678888875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-15 Score=178.02 Aligned_cols=207 Identities=8% Similarity=0.008 Sum_probs=144.5
Q ss_pred eeccccccEEEEEEecCCCeeEEEEE--eCCCcEEEEe-CCCceEEEecCCCCCEE---------EEEeeecCCccE-EE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE-LSGRKLFNFEGHEAPVY---------SICPHHKENIQF-IF 512 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~--s~d~~i~vwd-~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~~-l~ 512 (945)
.+.+|...+..++|++++- ++++. +.++...||. ..+.....+..+...+. ...|+.++||+. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 4567899999999997654 77777 6688999999 66667778887776665 555653356777 66
Q ss_pred EEEc-CCeEEEEEcc--CCCeeEEecC-----CCCeEEEEEEcCCCCEEEEEeecC------CCCceEEEEeCCC-----
Q 002264 513 STAI-DGKIKAWLYD--TMGSRVDYDA-----PGHWCTTMLYSADGSRLFSCGTSK------DGDSFLVEWNESE----- 573 (945)
Q Consensus 513 s~~~-dg~i~iwd~~--~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~~~------d~~~~i~iwd~~~----- 573 (945)
.++. +..|.+|++. .......+.. +...+..++|+|||+.|++++.+. .+...|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 5543 4556666554 2034444444 455788999999999999887531 1226899999988
Q ss_pred -CceeeEec-cccCcceEEEEEcCCCCEEEEEECC--------CcEEEEECC-CC---eeEEEeecCCCCCCccEEEEcC
Q 002264 574 -GTIKRTYA-GFRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMD-NV---NILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 574 -~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~~~v~~v~~sp 639 (945)
++.. .+. .+.. .+..++|+|||++|+.++.+ ..|++||+. ++ +.......+. ..+..++|+|
T Consensus 176 ~~~~~-~l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~--~~~~~~~~sp 251 (662)
T 3azo_A 176 RSAVR-ELSDDAHR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE--EAIAQAEWAP 251 (662)
T ss_dssp GGGSE-ESSCSCSS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT--BCEEEEEECT
T ss_pred CCcee-EEEecCCC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC--ceEcceEECC
Confidence 5544 333 3333 56678999999999988754 379999998 57 4444443322 3688999999
Q ss_pred CCCEEEEEECCCcEEEEEC
Q 002264 640 EGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~ 658 (945)
||+++++++.++...||.+
T Consensus 252 dg~l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRV 270 (662)
T ss_dssp TSCEEEEECTTSSCEEEEE
T ss_pred CCeEEEEECCCCCeEEEEE
Confidence 9998888877884444433
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-15 Score=157.15 Aligned_cols=245 Identities=14% Similarity=0.108 Sum_probs=182.0
Q ss_pred CcEEEEEEeCCCCeEEEEEeCc------------------------CcEEEEEcCCCCcccccccccccccccCcccccc
Q 002264 345 STVISMDFHPSHQTLLLVGSSN------------------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (945)
+.|.+++++|+|+ ++++++.+ ++|.+||..+++....
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4799999999998 67777766 4789999887775421
Q ss_pred cccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc-ccccceee---------ccccccEEEEEEec-CCCeeEEE
Q 002264 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQI---------DAHVGAVNDLAFAY-PNKLLCVV 469 (945)
Q Consensus 401 ~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~-~~~~~~~~---------~~h~~~v~~l~~s~-~~~~~~l~ 469 (945)
.-.++-.....++++|+|+++++...++.|++|+.++.. .+. .+ .++......++++| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 112345678999999999988888889999999986542 222 22 24455789999999 677 777
Q ss_pred EEe-CCCcEEEEeCCCceEEEecCC----------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--
Q 002264 470 TCG-DDKLIKVWELSGRKLFNFEGH----------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-- 536 (945)
Q Consensus 470 s~s-~d~~i~vwd~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 536 (945)
+.+ .++.|++||.+|+.+..+... -.....++++++ .+.++++...++.|++||.++++....+..
T Consensus 160 ~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 776 689999999888888777432 234889999764 257888888899999999987777766643
Q ss_pred CCCeEEEEEEcCCCCEEEEEee---cCCCCceEEEEeCCCCceeeEec---cccCcceEEEEEcCCCCEEEEEECCCcEE
Q 002264 537 PGHWCTTMLYSADGSRLFSCGT---SKDGDSFLVEWNESEGTIKRTYA---GFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~---~~d~~~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 610 (945)
....+..++++| +..+.+.+. .......+++||..+++.+..+. .+.. ....++++|+|..+++...++.|+
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEE
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEE
Confidence 445788999999 433333221 01135589999999999988874 3333 578899999997777777899999
Q ss_pred EEECCC
Q 002264 611 FWDMDN 616 (945)
Q Consensus 611 iwd~~~ 616 (945)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-15 Score=178.00 Aligned_cols=287 Identities=11% Similarity=0.016 Sum_probs=187.5
Q ss_pred ecCCCcEEEEEEeCCCCeEEEEE--eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEE--------
Q 002264 341 LHQGSTVISMDFHPSHQTLLLVG--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-------- 410 (945)
Q Consensus 341 ~~h~~~V~~v~fsp~g~~llasg--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-------- 410 (945)
.+|...|..++|++++- +++++ +.++...||....+.... .+..|...+.
T Consensus 20 ~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~~ 79 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYSG 79 (662)
T ss_dssp HHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTCC
T ss_pred hhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccCC
Confidence 34778999999998865 35555 557889999964433221 1333444444
Q ss_pred -EEEEc--CCCCE-EEEEEC-CCcEEEEEcc--C-Ccccccceeecc-----ccccEEEEEEecCCCeeEEEEEeCC---
Q 002264 411 -RVAWS--PDGNY-VGVAFT-KHLIQLYSYA--G-SNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDD--- 474 (945)
Q Consensus 411 -~i~~s--~~g~~-las~~~-dg~i~vwd~~--~-~~~~~~~~~~~~-----h~~~v~~l~~s~~~~~~~l~s~s~d--- 474 (945)
...|+ |||+. |+.++. +..|.+|++. + ++ .+ .+.. |...+.+++|+|||+ .|++++.|
T Consensus 80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~ 153 (662)
T 3azo_A 80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTG 153 (662)
T ss_dssp CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECS
T ss_pred ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccC
Confidence 45565 99998 776654 4567777765 3 43 23 3434 677899999999999 67777666
Q ss_pred -------CcEEEEeCCC------ceEEEec-CCCCCEEEEEeeecCCccEEEEEEcC--------CeEEEEEcc-CC---
Q 002264 475 -------KLIKVWELSG------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYD-TM--- 528 (945)
Q Consensus 475 -------~~i~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~--- 528 (945)
..|++||..+ .....+. .+...+..++|+| ||++|+.++.+ ..|.+||+. ++
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred CCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 5899999444 4455666 6667777888876 67888887755 379999998 45
Q ss_pred CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc-------ceEEEEEcCCCCEEE
Q 002264 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK-------SNGVVQFDTTQNHFL 601 (945)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~ 601 (945)
........+...+..+.|+|||+.++++. .++...|++||+.+++.......+... .+..++|++++..++
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGSLIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSCEEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred ccEEeCCCCCceEcceEECCCCeEEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 23333333456789999999999554443 223347888888777765544433221 045688999999999
Q ss_pred EEECCCcEEEE--ECCCCeeEEEeecCCCCCCccEE-EEcCCCCEEEEEECCC--cEEEEECCCC
Q 002264 602 AVGEDSQIKFW--DMDNVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTADN--GFKILANAIG 661 (945)
Q Consensus 602 ~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v-~~sp~g~~l~~~~~dg--~i~iw~~~~~ 661 (945)
+++. +.+++| |+.+++ +..+..+. ..+..+ +++++.-.+++++.+. .|.++++.++
T Consensus 310 ~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9888 999998 665665 45555443 355655 4443333344445554 4555666665
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-13 Score=152.52 Aligned_cols=331 Identities=12% Similarity=0.096 Sum_probs=219.5
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc--CCCeeEEecCCCCeEEE
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~ 543 (945)
++++...+++|.++| .+++.+.++... ..+..+.++| ||+++++++.|+.|.+||+. +.+....+.. +.....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 788888899999999 888888887643 3566888866 67899999999999999995 6666666554 345678
Q ss_pred EEEc----CCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc----------CcceEEEEEcCCCCEEEEE-ECCCc
Q 002264 544 MLYS----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQFDTTQNHFLAV-GEDSQ 608 (945)
Q Consensus 544 ~~~s----~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~-~~dg~ 608 (945)
++|+ |||++++++.. ..+.+.++|..+.+.+..+.... ...+..+..++++..+++. ..+|.
T Consensus 245 ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 9999 69999998875 37899999999999888765321 2246678888886655554 46799
Q ss_pred EEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
|.++|..+...+....... .....++.|+|+|++++++. .++.|.++|..+++ .......
T Consensus 322 v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k-l~~~i~v----------------- 382 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-LVAIEDT----------------- 382 (567)
T ss_dssp EEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEEC-----------------
T ss_pred EEEEecCCCccceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-EEEEEec-----------------
Confidence 9999998764333322221 12467899999999987766 46899999998772 2211100
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
.|+ ..|..+-
T Consensus 383 gg~----------------------------------------------------------------------~Phpg~g 392 (567)
T 1qks_A 383 GGQ----------------------------------------------------------------------TPHPGRG 392 (567)
T ss_dssp SSS----------------------------------------------------------------------SBCCTTC
T ss_pred cCc----------------------------------------------------------------------CCCCccc
Confidence 000 0022211
Q ss_pred EEEEEecCCCeEEEee--ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 768 VRLLYTNSAVGLLALG--SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
..+ ++|++..+.+.+ .++.|.+++......... . .+.+. .+.. ....-..+.++||+++
T Consensus 393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~----------~-----~kvv~-~i~~--~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN----------A-----WKILD-SFPA--LGGGSLFIKTHPNSQY 453 (567)
T ss_dssp EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT----------B-----TSEEE-EEEC--SCSCCCCEECCTTCSE
T ss_pred eee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc----------c-----CEEEE-EEec--CCCCCEEEEeCCCCCe
Confidence 122 567755554433 357888887543110000 0 01111 1111 1122244678999998
Q ss_pred EEecC--------CCeEEEEeccCc-----e-EEEEec--------CCCCCeeEEEeecCCCceEEEee-----cCceEE
Q 002264 846 VMSAT--------GGKISLFNMMTF-----K-VMTTFM--------SPPPASTFLAFHPQDNNIIAIGT-----EDSTIH 898 (945)
Q Consensus 846 la~~s--------d~~i~iwd~~~~-----~-~~~~~~--------~h~~~i~~l~~s~~~~~~lasg~-----~dg~v~ 898 (945)
+.+.. .++|.|+|+.+. . ....+. .....+..+.|++ +|+.+..+. .++.|.
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~s~~~~~~~~~~i~ 532 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALV 532 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEE
T ss_pred EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC-CCCEEEEEeecCCCCCCcEE
Confidence 88755 247999999877 2 112231 1234689999999 776665553 378999
Q ss_pred EEecccceEEEEecC
Q 002264 899 IYNVRVDEVKSKLKG 913 (945)
Q Consensus 899 vwd~~~~~~~~~l~~ 913 (945)
|+|..+++++.++..
T Consensus 533 v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 533 VVDDKTLELKHVIKD 547 (567)
T ss_dssp EEETTTTEEEEEECC
T ss_pred EEECCCceEEEEeCC
Confidence 999999999888875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-14 Score=156.83 Aligned_cols=262 Identities=10% Similarity=0.114 Sum_probs=176.7
Q ss_pred CcEEEEEEeCCCCeEEEEE--------eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 345 STVISMDFHPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasg--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
..+...++ ||++++++. +.++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 36788888 898755542 226789999998775321 2 4688999999
Q ss_pred CCCEEEEEECC---C--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC------------------
Q 002264 417 DGNYVGVAFTK---H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------------------ 473 (945)
Q Consensus 417 ~g~~las~~~d---g--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~------------------ 473 (945)
||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 37888888775443 223334 99999999999 5555542
Q ss_pred ---------CCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC-------eEEEEEccCCCeeEEecC
Q 002264 474 ---------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------KIKAWLYDTMGSRVDYDA 536 (945)
Q Consensus 474 ---------d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~ 536 (945)
...|.+|| .+++.+..+.. . .+..++|+| +| +++++..++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25688999 55655355554 3 778888876 66 777776542 44566555 333333333
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCC----CCceEEEEeCCCCceeeEeccccCcceEE-EEEcCCCCEEEEEECCCcEEE
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~i 611 (945)
+ ..+..+ +|||+.|+..+.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 344444 899999988774221 135788998 5655444444333 5665 8899 88 8888899999999
Q ss_pred EECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE-EEEECC
Q 002264 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF-KILANA 659 (945)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i-~iw~~~ 659 (945)
| +.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444432 23688999999 677777777665 777765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-13 Score=156.17 Aligned_cols=317 Identities=12% Similarity=0.063 Sum_probs=215.3
Q ss_pred CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC--CCceeeEecccc
Q 002264 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKRTYAGFR 584 (945)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~--~~~~~~~~~~~~ 584 (945)
.+.++++...++.|.++|..+++....+.... .+..+.++|||+++++++. ++.|.+||+. +++.+..+....
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEECCS
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEecCC
Confidence 44677778889999999999988877766433 4678999999999998874 7899999996 778877776533
Q ss_pred CcceEEEEEc----CCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCC---------CCCccEEEEcCCCCEEE-EEEC
Q 002264 585 KKSNGVVQFD----TTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLA-VTTA 649 (945)
Q Consensus 585 ~~~~~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~sp~g~~l~-~~~~ 649 (945)
....++|+ |+|+++++++ .++.|.++|..+.+.+..+...+. ...+..+..++++..++ ....
T Consensus 241 --~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 241 --EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp --EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred --CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 35679999 6999998877 569999999999999888764321 12466788888765544 3444
Q ss_pred CCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCc
Q 002264 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (945)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (945)
+|.|.++|..+... +.
T Consensus 319 ~g~v~~vd~~~~~~-~~--------------------------------------------------------------- 334 (567)
T 1qks_A 319 TGKILLVDYTDLNN-LK--------------------------------------------------------------- 334 (567)
T ss_dssp TTEEEEEETTCSSE-EE---------------------------------------------------------------
T ss_pred CCeEEEEecCCCcc-ce---------------------------------------------------------------
Confidence 67888888754310 00
Q ss_pred cccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeee
Q 002264 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASA 808 (945)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~ 808 (945)
+..+ . .......+.|+|+|++++++.. ++.|.++|... ++..+..
T Consensus 335 ----------v~~i------------~------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t------~kl~~~i 380 (567)
T 1qks_A 335 ----------TTEI------------S------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE------GKLVAIE 380 (567)
T ss_dssp ----------EEEE------------E------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT------TEEEEEE
T ss_pred ----------eeee------------e------ccccccCceECCCCCEEEEEeCCCCeEEEEECCC------CcEEEEE
Confidence 0000 0 1123456789999998877664 68888887532 1221110
Q ss_pred ccccccCCCcccccccccCCCcCCceeEEeecCC-CceEEecC--CCeEEEEeccC-------ceEEEEecCCCCCeeEE
Q 002264 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-DSYVMSAT--GGKISLFNMMT-------FKVMTTFMSPPPASTFL 878 (945)
Q Consensus 809 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d-g~~la~~s--d~~i~iwd~~~-------~~~~~~~~~h~~~i~~l 878 (945)
+.. + ...|.+.-..+ ++|+ +..++++. +++|.++|..+ .+.+.++......-..+
T Consensus 381 -----~vg-g--------~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i 445 (567)
T 1qks_A 381 -----DTG-G--------QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI 445 (567)
T ss_dssp -----ECS-S--------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE
T ss_pred -----ecc-C--------cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEE
Confidence 000 0 00133222222 5787 45555553 58899999988 77888888654444668
Q ss_pred EeecCCCceEEEeec-------CceEEEEecccc-----e-EEEEec--------CCCcceeEEEecCCcceeeeec---
Q 002264 879 AFHPQDNNIIAIGTE-------DSTIHIYNVRVD-----E-VKSKLK--------GHQKRITGLAFSTSLNILVSSG--- 934 (945)
Q Consensus 879 ~~s~~~~~~lasg~~-------dg~v~vwd~~~~-----~-~~~~l~--------~h~~~V~~l~~s~dg~~l~s~~--- 934 (945)
.++| ++++|.+... .++|.|+|+.+. . ....+. .....+..+.|+++|+++..+.
T Consensus 446 ~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~ 524 (567)
T 1qks_A 446 KTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG 524 (567)
T ss_dssp ECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred EeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC
Confidence 8999 8888887653 459999999877 2 123332 1245789999999999877653
Q ss_pred --CCceEEEEec
Q 002264 935 --ADAQVTLCVE 944 (945)
Q Consensus 935 --~Dg~i~vWdl 944 (945)
.++.|.|+|.
T Consensus 525 ~~~~~~i~v~D~ 536 (567)
T 1qks_A 525 KDQESALVVVDD 536 (567)
T ss_dssp TTSCCEEEEEET
T ss_pred CCCCCcEEEEEC
Confidence 3788999884
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-14 Score=147.95 Aligned_cols=244 Identities=11% Similarity=0.102 Sum_probs=177.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceee---ccccccEEEEEEe-cCCCeeEEEEEeC-CCcEE
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFA-YPNKLLCVVTCGD-DKLIK 478 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~~s-~~~~~~~l~s~s~-d~~i~ 478 (945)
++-..+.+++++++|+++++...++.|.+||.+ ++.+...... .+|...+.++++. +++. ++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455679999999999988888889999999987 4443321110 1345678999995 5665 5555533 88999
Q ss_pred EEeCCCceEEEecC-CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec--CCCCeEEEEEEcCCCCEEEE
Q 002264 479 VWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 479 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~ 555 (945)
+||.+++.+..+.. +...+.++++.+ +|+++++...++.|.+||.. +.....+. .....+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99977887777643 345688899866 56777777788999999964 34444443 23346899999999986666
Q ss_pred EeecCCCCceEEEEeCCCCceeeEecccc-CcceEEEEEcCCCCEEEEEECCC-cEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
... ++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+.
T Consensus 181 ~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred ECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 543 778999997 455666664432 12578899999998888877775 9999995 566666666554333467
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 634 RLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 634 ~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
+++++|+|+++++ +.++.|++|+...
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 9999999987766 6799999999854
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-14 Score=154.05 Aligned_cols=244 Identities=10% Similarity=0.009 Sum_probs=180.5
Q ss_pred CccEEEEEEcCCCCEEEEEECC------------------------CcEEEEEccCCcccccceeec-cccccEEEEEEe
Q 002264 406 PISVSRVAWSPDGNYVGVAFTK------------------------HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFA 460 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~d------------------------g~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s 460 (945)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+. .+. ++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ---SSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE---EECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe---ccCCCccCCceEEEEC
Confidence 3579999999999999888777 479999998887654 222 455678999999
Q ss_pred cCCCeeEEEEEeCCCcEEEEeCCCc--eEEEe---------cCCCCCEEEEEeeecCCccEEEEEE-cCCeEEEEEccCC
Q 002264 461 YPNKLLCVVTCGDDKLIKVWELSGR--KLFNF---------EGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTM 528 (945)
Q Consensus 461 ~~~~~~~l~s~s~d~~i~vwd~~~~--~~~~~---------~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~ 528 (945)
++|+ ++++...++.|++||.++. .+..+ .++......+++++. ++.++++.+ .++.|++|| ..+
T Consensus 100 ~~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 100 TDGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp TTSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEEEEC-TTS
T ss_pred CCCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEEEEc-CCC
Confidence 9999 7888888999999996665 55555 344456889998763 456777776 699999999 445
Q ss_pred CeeEEecCCC----------CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc-cCcceEEEEEcCCC
Q 002264 529 GSRVDYDAPG----------HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQ 597 (945)
Q Consensus 529 ~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 597 (945)
.....+.... .....++++|++..++++.. +++.|++||..+++.+..+... ....+..++++| +
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~---~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g 251 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR---ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G 251 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET---TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC---CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence 5554443221 24789999999555555443 4789999999989988887532 122577888998 3
Q ss_pred CEEEEE-------ECCCcEEEEECCCCeeEEEeec-CCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 598 NHFLAV-------GEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 598 ~~l~~~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
..+.+. ..+..|++|+..+++.+..+.. ..+......++++|+|.++++...++.|++|++..
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 333332 2355899999999999888742 12334678999999998888888899999999854
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-14 Score=146.90 Aligned_cols=245 Identities=13% Similarity=0.160 Sum_probs=176.7
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE-cCCCCEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYV 421 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~-s~~g~~l 421 (945)
|-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+.. +. . .....+|...+.++++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~--~~---~--------~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQ--FG---E--------CGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEE--EC---C--------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEE--ec---c--------cCCCcccccCceEEEEEcCCCeEE
Confidence 445799999999998 68887889999999976 443321 00 0 0001245567899999 5777777
Q ss_pred EEEEC-CCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec--CCCCCE
Q 002264 422 GVAFT-KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEAPV 497 (945)
Q Consensus 422 as~~~-dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~--~~~~~v 497 (945)
++... ++.|.+|+ .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||.+++.+..+. .+...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 66643 78999999 4555443 232 3445789999999998 7888888899999997777776664 344568
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCEEEEEeecCCCCc-eEEEEeCCCC
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDS-FLVEWNESEG 574 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~d~~~-~i~iwd~~~~ 574 (945)
.++++++ +|.++++...++.|++||.. +.....+.... ..+..++++++|+.+++... ++ .|.+||. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8999876 56777777789999999974 44444554432 46889999999987777653 54 8999995 56
Q ss_pred ceeeEeccccC-cceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 575 TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 575 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
+.+..+..+.. ..+..++++|+|+.+++ +.++.|++|++...
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 66666655432 23678999999976655 67999999998654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=148.76 Aligned_cols=272 Identities=10% Similarity=0.010 Sum_probs=184.7
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|.+++|+|++.. ++..+.++.++.|. ++.. ..+.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~-------------------~~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPW-------------------LEISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEE-------------------EEEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---ccee-------------------EEEeccCccccCcEECCCCCEEEEE
Confidence 36788899999874 66667788999993 2222 1244566678999999999988888
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC----CcEEEEe-CCCceEEEec--CCCCCE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE--GHEAPV 497 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d----~~i~vwd-~~~~~~~~~~--~~~~~v 497 (945)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+|| ..+.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998875433 1224567899999999998 67776666 6899999 5444432332 234568
Q ss_pred EEEEeeecCCccEEEEEEc------CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC
Q 002264 498 YSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
.++++.+ +|.++++... .+.|..+|...+.... +......+..++|+|+++.++++.. .++.|.+||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8898876 5566665543 2455555554433322 2222234788999999997766542 2678999998
Q ss_pred CC-CceeeEe------ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC----CCCccEEEEcCC
Q 002264 572 SE-GTIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----LPNLPRLRFSKE 640 (945)
Q Consensus 572 ~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~sp~ 640 (945)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. +++.+..+..+.. ...+.+++|+||
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 3322211 1111125677999999998887778899999998 5666666654321 114789999999
Q ss_pred CCEEEEEECCC
Q 002264 641 GNLLAVTTADN 651 (945)
Q Consensus 641 g~~l~~~~~dg 651 (945)
++.|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 88777666553
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=164.05 Aligned_cols=249 Identities=9% Similarity=-0.003 Sum_probs=174.0
Q ss_pred cCCCccEEEEEEcCCCCEEEEEECCC-----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc-
Q 002264 403 KDVPISVSRVAWSPDGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~~~dg-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~- 476 (945)
.+|...+..++|||||++||.+..++ .|++||+.+|+.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCcc
Confidence 34666799999999999999876543 899999999876542 12 222367899999999 6777776665
Q ss_pred ---------------EEEEe-CCCc----eEEEecCCCCCEEEEEeeecCCccEEEEEEc-----CCeEEEEEccC----
Q 002264 477 ---------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDT---- 527 (945)
Q Consensus 477 ---------------i~vwd-~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~---- 527 (945)
|++|+ .++. .+.....+...+.++.|+| ||++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 5554 2222233455677888866 6678877765 56899999986
Q ss_pred --CC-eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce--eeEeccccC-cceEEEEEcCCCCEEE
Q 002264 528 --MG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRK-KSNGVVQFDTTQNHFL 601 (945)
Q Consensus 528 --~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~ 601 (945)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. .+.+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 42 34445444444443 48899999888775333356899999987742 234444433 3577788887777777
Q ss_pred EEECCCc--EEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC----CCcEEEEECCCCc
Q 002264 602 AVGEDSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (945)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~----dg~i~iw~~~~~~ 662 (945)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .++|..||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7777874 667788778777777665 336788999999887664432 4789999998874
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-13 Score=144.84 Aligned_cols=255 Identities=9% Similarity=0.088 Sum_probs=166.4
Q ss_pred CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC-CCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 517 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~-d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
++.|.+||+.+++... + ..+..+.|+|||+.|+..+... ++...|++||+.+++......... +..++|+|
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC
Confidence 5678999988766433 2 4578899999999999877522 124468899998887666554432 78899999
Q ss_pred CCCEEEEEECC---------------------------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 596 TQNHFLAVGED---------------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 596 ~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
+|+.|+.++.+ ..|++||+.+++.+..+.. . .+..++|+||| +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEe
Confidence 99999888742 5799999999887444543 1 57899999999 777776
Q ss_pred CCC-------cEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCC
Q 002264 649 ADN-------GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (945)
Q Consensus 649 ~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (945)
.++ ...+|.+.++ .
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~-~---------------------------------------------------------- 209 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG-K---------------------------------------------------------- 209 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT-E----------------------------------------------------------
T ss_pred cccccccccccccEEEeCCC-c----------------------------------------------------------
Confidence 542 2233322111 0
Q ss_pred ccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecC--------eEEEEee
Q 002264 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG--------VQKLWKW 793 (945)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg--------~i~lw~~ 793 (945)
...+. . + ..+..+ +|||+.|+.++.++ .|.+|
T Consensus 210 ------------------------------~~~l~--~---~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~-- 249 (347)
T 2gop_A 210 ------------------------------EEKMF--E---K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIY-- 249 (347)
T ss_dssp ------------------------------EEEEE--E---E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEE--
T ss_pred ------------------------------eEEec--c---C-cceeeE--CCCCCEEEEEEccccCCccccceEEEE--
Confidence 00000 0 1 122333 78888887776542 33333
Q ss_pred cCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeE-EeecCCCceEEecC-CCeEEEEeccCceEEEEecCC
Q 002264 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC-IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP 871 (945)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h 871 (945)
+ +++.. ....+ +...+.. ++|+ |+ ++++++ ++.++|| +.+++....+ .+
T Consensus 250 --------------------d--~~~~~-~l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~ 300 (347)
T 2gop_A 250 --------------------D--GKEVM-GILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KG 300 (347)
T ss_dssp --------------------C--SSCEE-ESSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CS
T ss_pred --------------------C--CCceE-ecccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cC
Confidence 2 12211 11222 4566776 8999 88 878777 7889999 8776664444 45
Q ss_pred CCCeeEEEeecCCCceEEEeecCceE-EEEecccceEEEEecCCCcc
Q 002264 872 PPASTFLAFHPQDNNIIAIGTEDSTI-HIYNVRVDEVKSKLKGHQKR 917 (945)
Q Consensus 872 ~~~i~~l~~s~~~~~~lasg~~dg~v-~vwd~~~~~~~~~l~~h~~~ 917 (945)
.+.|.+++|+| .++++++.++.. .||.+. ++ ...+..|...
T Consensus 301 ~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 301 RHWIMGFDVDE---IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp SSEEEEEEESS---SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred CCeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 77899999997 577777777765 777776 54 4556666554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-13 Score=159.87 Aligned_cols=301 Identities=10% Similarity=0.030 Sum_probs=182.3
Q ss_pred CCCCEEEEEeecCCC-CceEEEEeCCCCceeeEeccc-----cCcceEEEEEcCCCCEEEEEECCC-----cEEEEECCC
Q 002264 548 ADGSRLFSCGTSKDG-DSFLVEWNESEGTIKRTYAGF-----RKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDN 616 (945)
Q Consensus 548 ~~~~~l~~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 616 (945)
|+|++++.......+ .+.+++.+...++....+... ....+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 788888766543221 225566665555443322211 112477899999999998876433 899999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
++......... .+..++|+|||+.|+.++.++. .. .. .+...
T Consensus 161 g~~~~~~~~~~---~~~~~~wspDg~~l~~~~~~~~-------~~-~~----~~~~~----------------------- 202 (710)
T 2xdw_A 161 AKELPDVLERV---KFSCMAWTHDGKGMFYNAYPQQ-------DG-KS----DGTET----------------------- 202 (710)
T ss_dssp TEEEEEEEEEE---CSCCEEECTTSSEEEEEECCCC-------SS-CC----SSSCC-----------------------
T ss_pred CCCCcccccCc---ccceEEEEeCCCEEEEEEECCc-------cc-cc----ccccc-----------------------
Confidence 98776432221 3678999999999999887754 00 00 00000
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
.......|++|++....... ......+ .+...+..+.|||||
T Consensus 203 ----------------------------------~~~~~~~v~~~~l~t~~~~~-~~v~~~~---~~~~~~~~~~~SpDg 244 (710)
T 2xdw_A 203 ----------------------------------STNLHQKLYYHVLGTDQSED-ILCAEFP---DEPKWMGGAELSDDG 244 (710)
T ss_dssp ----------------------------------CCCCCCEEEEEETTSCGGGC-EEEECCT---TCTTCEEEEEECTTS
T ss_pred ----------------------------------ccCCCCEEEEEECCCCcccc-eEEeccC---CCCeEEEEEEEcCCC
Confidence 00000223333332211000 0000111 144557789999999
Q ss_pred CeEEEeee-----cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-
Q 002264 777 VGLLALGS-----NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT- 850 (945)
Q Consensus 777 ~~l~~~~~-----dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s- 850 (945)
++|+..+. +..+.+|++........ +......+.. +...+.. .|++||+.|+..+
T Consensus 245 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~----------------~~~~~~~l~~--~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 245 RYVLLSIREGCDPVNRLWYCDLQQESNGIT----------------GILKWVKLID--NFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp CEEEEEEECSSSSCCEEEEEEGGGSSSSSC----------------SSCCCEEEEC--SSSSCEE-EEEEETTEEEEEEC
T ss_pred CEEEEEEEccCCCccEEEEEECcccccccC----------------CccceEEeeC--CCCcEEE-EEeccCCEEEEEEC
Confidence 99988775 45777777643100000 1000001222 3333333 5889998777664
Q ss_pred C----CeEEEEeccCce--EEEEecCCCC--CeeEEEeecCCCceEEEeecCce--EEEEecccceEEEEecCCCcceeE
Q 002264 851 G----GKISLFNMMTFK--VMTTFMSPPP--ASTFLAFHPQDNNIIAIGTEDST--IHIYNVRVDEVKSKLKGHQKRITG 920 (945)
Q Consensus 851 d----~~i~iwd~~~~~--~~~~~~~h~~--~i~~l~~s~~~~~~lasg~~dg~--v~vwd~~~~~~~~~l~~h~~~V~~ 920 (945)
. ..|.+||+.+++ ....+..|.. .+..+.|++ ++.++++...|+. |++|++.+|+.+..+..+.+.|.+
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~ 384 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVG 384 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEE
Confidence 2 359999998764 2244444544 588899997 8889999998985 566777678888888888888999
Q ss_pred EEecCCcceeee----ecCCceEEEEec
Q 002264 921 LAFSTSLNILVS----SGADAQVTLCVE 944 (945)
Q Consensus 921 l~~s~dg~~l~s----~~~Dg~i~vWdl 944 (945)
++++|++..++. ....++|++||+
T Consensus 385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred EecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 999999976662 234578999986
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-13 Score=140.21 Aligned_cols=246 Identities=7% Similarity=-0.021 Sum_probs=174.0
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.....+.....+++|+|+|+.+++++..++.|..|+..++ .. .+..+...+.+++++|+
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~--------------------~~~~~~~~~~~l~~~~d 79 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS--------------------PEMHPSHHQNGHCLNKQ 79 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE--------------------EEESSCSSEEEEEECTT
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE--------------------EEECCCCCcceeeECCC
Confidence 3344466788999999999877889988999999998876 21 13346678999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeecc-ccccEEEEEEecCCCeeEEEEE----e-------------CCCcEEE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTC----G-------------DDKLIKV 479 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~----s-------------~d~~i~v 479 (945)
|+++++...++.|.+||..+++.........+ ....+.+++++|+|. ++++. + ..+.|..
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~ 157 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFR 157 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEE
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEE
Confidence 99888777778999999987764321111111 123567899999998 67763 2 1345666
Q ss_pred EeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-CCCe---eEEecCCCCeEEEEEEcCCCCEEEE
Q 002264 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGS---RVDYDAPGHWCTTMLYSADGSRLFS 555 (945)
Q Consensus 480 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~ 555 (945)
++..++ +..+..+......++|++ +++.+++.+.++.|.+|++. .+.. ...+......+..++++++|+..++
T Consensus 158 ~~~~g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 158 LAPDGT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp ECTTSC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred ECCCCC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE
Confidence 664444 445555667788999876 55777777788999999987 3332 2222233445678999999986665
Q ss_pred EeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEE-cCCCCEEEEEECCCcEEEEECCCCee
Q 002264 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 556 ~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
. ++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.+ .+.-++..+...
T Consensus 235 ~------~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 235 A------GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp E------TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred c------CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 4 4679999986 777777776554 677888 5888999998876 455666666554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-12 Score=132.34 Aligned_cols=282 Identities=9% Similarity=-0.051 Sum_probs=192.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
+...+.+++++++|+ +.++...++.|.+||.. ++... .....+...+.+++++++|.+++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~------------------~~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITE------------------YPLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEE------------------EECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEE------------------ecCCcccCceeeEEECCCCCEEE
Confidence 456899999999998 56655557899999987 44321 01122446799999999999888
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEE-EecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF-NFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~v~~~~ 501 (945)
+...++.|..|+.+ ++ .... .+......+.++++.++|. ++++...++.|.+||.+++... ........+.+++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 87768889999976 33 2211 2223455789999999998 7777777889999997554432 2233455688888
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEE-ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
+.+ +|.+.++...++.|..||. ++..... .......+..++++++|+..++.. ..+.|..||. +++.....
T Consensus 148 ~~~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LGS--DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEFK 219 (299)
T ss_dssp ECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred EcC--CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEEE
Confidence 765 5567766666789999998 4443322 233345688999999998666543 2678999999 66644321
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.......+..++++++|+.+++...++.|..||. ++.. ..+....+...+.++++ ++|.+.++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2112235788999999886655557889999998 4543 34433333346889999 8888766654 56777777765
Q ss_pred C
Q 002264 661 G 661 (945)
Q Consensus 661 ~ 661 (945)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=163.45 Aligned_cols=248 Identities=10% Similarity=-0.058 Sum_probs=165.1
Q ss_pred cCCCccEEEEEEcCCCCEEEEE-----ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc-
Q 002264 403 KDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (945)
Q Consensus 403 ~~h~~~V~~i~~s~~g~~las~-----~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~- 476 (945)
.+|...+.+++|||||++||.+ +.+..|++||+.+|+.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4577789999999999999943 4456899999999875511 012111 126799999999 7788877776
Q ss_pred ------------EEEEe-CCCc----eEEEecCCCCCEEEEEeeecCCccEEEEEEcCC----eEEEEEccCCCeeEEec
Q 002264 477 ------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDTMGSRVDYD 535 (945)
Q Consensus 477 ------------i~vwd-~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 535 (945)
|++|+ .++. .+.....+...+.++.|++ ||++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 99999 5554 3333344556788888876 667777777665 56666554433 33344
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce---eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 002264 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (945)
Q Consensus 536 ~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 612 (945)
.+...+....+ ++|+ ++..+.....++.|.+||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 44444455555 6777 655543222468999999987753 333333324357778887 56677778888888877
Q ss_pred ECC-CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC----CCcEEEEECCCCc
Q 002264 613 DMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (945)
Q Consensus 613 d~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~----dg~i~iw~~~~~~ 662 (945)
.+. ++.....+..+. ...+..++++|+++.++.... .++|++||+.++.
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 654 455555555432 235778889999987774433 4789999998874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-13 Score=136.93 Aligned_cols=243 Identities=11% Similarity=0.069 Sum_probs=179.0
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
+|++++.++.|.+||.++|+.+-+ +..+. ..+.+++++|+|++++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 799999999999999989987632 22233 4678999999999998 35778999998 7
Q ss_pred Ccccccceeeccc-cccEEEEEEecCCCeeEEEEEeC-CCcEEEEeCCCceEEEecC------CCCCEEEEEeeecCCcc
Q 002264 438 SNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQ 509 (945)
Q Consensus 438 ~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~ 509 (945)
|+.+. .+..+ ...+.++.+.++|+ ++++.+. ++.|..+|.+|+.+..+.. +......+++ ..+|+
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 77665 34333 34688999999999 7787776 7788888888888777642 1122333343 44778
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---- 585 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~---- 585 (945)
++++...++.|..||.+ ++.+..+.... ...++...++|+.+++... ++.|..+|..+|+.+..+.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999987 88888877653 3456778899998888763 66899999999999988864321
Q ss_pred -cceEEEEEcCCCCEEEEEECC--------CcEEEEEC-CCCeeEEEeecCCCCCCccEEE
Q 002264 586 -KSNGVVQFDTTQNHFLAVGED--------SQIKFWDM-DNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 586 -~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
..+..+...++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 126778888999888877421 23355555 4778888877666666666654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-13 Score=143.21 Aligned_cols=270 Identities=11% Similarity=-0.017 Sum_probs=183.6
Q ss_pred CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccc
Q 002264 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444 (945)
Q Consensus 365 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~ 444 (945)
.+++|.+||..+++.... + +.. ..-.........+++. +++..++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~--i--~~~---------~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENE--V--FYR---------ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECS--H--HHH---------HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhh--h--Hhh---------hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 478999999998876531 1 000 0001122446777774 455555566678999999999887663
Q ss_pred eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC-----CCEEEEEeeecCCccEEEEEE-cC
Q 002264 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE-----APVYSICPHHKENIQFIFSTA-ID 517 (945)
Q Consensus 445 ~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d 517 (945)
+. .......+++++++. ++++...++.|.+|| .+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 32 346788999999985 666665799999999 7777766665333 14456666 2 334444443 48
Q ss_pred CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC------CceEEEEeCCCCceeeEeccccCcceEEE
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG------DSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 591 (945)
+.|.++|..+++....+.... ....+.++|+|+.++++....+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 999999999887776665433 35678899999876665421000 26899999999988877654333357889
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCEEEEE----ECCCcEEEEECCCC
Q 002264 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT----TADNGFKILANAIG 661 (945)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~----~~dg~i~iw~~~~~ 661 (945)
+++|+++.++++.. .|++||..+++................++++| ++.+.++. ..++.|.+|+.. +
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g 302 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G 302 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C
Confidence 99999999988765 89999998887532111111123578899999 55555555 567899999987 5
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-12 Score=135.84 Aligned_cols=312 Identities=8% Similarity=-0.045 Sum_probs=200.6
Q ss_pred ecCCccEEEEEEc-----CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec------CCCCceEEEEeCC
Q 002264 504 HKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNES 572 (945)
Q Consensus 504 ~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~ 572 (945)
|.++++.+++... ++.|.+.|..+.+....+.....+ . +.++|||++++++... +..++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4557777777765 689999999998888777665555 4 9999999999877520 0125679999999
Q ss_pred CCceeeEecccc------CcceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 573 EGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 573 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
+++.+..+.... ......+.++|+|++++++.. ++.|.++|+.+++.+..+...+ + ...+....+.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YHIFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EEEEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ceeecCCCcee
Confidence 999888875321 113455899999999999874 6899999999999999987643 1 22333345677
Q ss_pred EEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccC
Q 002264 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (945)
++.+.||.+.+.++.+......... . .|.++...
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~----~---------~~~~~~~~--------------------------------- 226 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHT----E---------VFHPEDEF--------------------------------- 226 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEEC----C---------CCSCTTSC---------------------------------
T ss_pred EEECCCCCEEEEECCCCCeEEEeec----c---------eecccccc---------------------------------
Confidence 7888899999998875212110000 0 00000000
Q ss_pred CCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEe-cCCCeEEEeeecCeEEEEeecCCCCCCCCc
Q 002264 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (945)
Q Consensus 725 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (945)
+ ....+|. ++|+.++ .+.+|.+.+.|+..........
T Consensus 227 ---------------~--------------------------~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 227 ---------------L--------------------------INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp ---------------B--------------------------CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred ---------------c--------------------------cccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence 0 0011343 5665333 4457788887754322111000
Q ss_pred eeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-----------CCeEEEEeccCceEEEEecCCC
Q 002264 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPP 872 (945)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-----------d~~i~iwd~~~~~~~~~~~~h~ 872 (945)
|++...... ..+ -..+....++++++++.+.++. .+.|.++|+.+++.+.++.. .
T Consensus 265 ---------~~~~~~~~~---~~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g 330 (386)
T 3sjl_D 265 ---------VEALTEAER---ADG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-G 330 (386)
T ss_dssp ---------EESSCHHHH---HTT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-E
T ss_pred ---------eeccccccc---ccc-ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-C
Confidence 110000000 000 0123345678899998877763 14599999999999998873 3
Q ss_pred CCeeEEEeecCCCc-eEEEe-ecCceEEEEecccceEEEEecCCCcceeEEEecCC
Q 002264 873 PASTFLAFHPQDNN-IIAIG-TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (945)
Q Consensus 873 ~~i~~l~~s~~~~~-~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d 926 (945)
..+..|+|++ |++ +|++. ..++.|.|+|..+++.+.++..- +.-..|.+++|
T Consensus 331 ~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 331 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 4688999999 665 55554 55899999999999999988743 44556677776
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-13 Score=139.04 Aligned_cols=237 Identities=12% Similarity=0.056 Sum_probs=167.1
Q ss_pred ccCCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
+..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++++++|. ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667788999999998 7778888999999999876 33 4555777899999999998 77777777899999
Q ss_pred e-CCCceEEEecCC----CCCEEEEEeeecCCccEEEEEEc-----------------CCeEEEEEccCCCeeEEecCCC
Q 002264 481 E-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 481 d-~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
| .+++........ ...+..+++.+ +|+++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 9 577754333221 12456678765 6677776321 2345555443 3444444555
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCce---eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (945)
.....++|+|+++.+++.+ .++.|++||+. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 5678999999999984443 37789999986 5554 3344 2222345679999999866555 789999998
Q ss_pred CCCeeEEEeecCCCCCCccEEEE-cCCCCEEEEEECCCcEEEEECCCC
Q 002264 615 DNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~-sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 6 777777765432 789999 5899999998876 4444555443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-11 Score=127.62 Aligned_cols=278 Identities=9% Similarity=0.023 Sum_probs=184.7
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
....+.+++++++|+.+++.. .++.|..||.. ++............+..+++++++..+++...++.|..|+..
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~----~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQH----KANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEET----TTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cCCCccceEECCCCCEEEEec----CCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 345789999999999777654 26789999988 554432212122367889999999877776668899999986
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
++. ..+........+.+++++++|.++++...++.|..|+. ++.. . .+
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~-~~---------------------------- 134 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-R-EY---------------------------- 134 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-E-EE----------------------------
T ss_pred CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-E-Ee----------------------------
Confidence 332 33332222346789999999988887767788888877 3311 0 00
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
..+. ....+.++++.++|
T Consensus 135 -----------------------------------------------------------~~~~---~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 135 -----------------------------------------------------------ELPN---KGSYPSFITLGSDN 152 (299)
T ss_dssp -----------------------------------------------------------ECSS---TTCCEEEEEECTTS
T ss_pred -----------------------------------------------------------cCCC---CCCCCceEEEcCCC
Confidence 0000 12345778888888
Q ss_pred CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEE
Q 002264 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKIS 855 (945)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~ 855 (945)
...++...++.|..|+. .+.. ....+.. ....+.+++++++|+++++.. ++.|.
T Consensus 153 ~l~v~~~~~~~i~~~~~-------~g~~----------------~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-------SGDI----------------TEFKIPT--PASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp CEEEEETTTTEEEEECT-------TCCE----------------EEEECSS--TTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CEEEEeCCCCEEEEEcC-------CCcE----------------EEeeCCC--CCCcceeEEECCCCCEEEEccCCceEE
Confidence 76666555677777753 1111 1100111 344578999999998777765 68899
Q ss_pred EEeccCceEEEE-ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEE-ecCCCcceeEEEecCCcceeeee
Q 002264 856 LFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 856 iwd~~~~~~~~~-~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~ 933 (945)
+||. +++.... +..+...+.++++++ ++++.++...++.|.+||. +++.... +..+...+.++++ ++|.++++.
T Consensus 208 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~ 283 (299)
T 2z2n_A 208 RITT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM 283 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE
T ss_pred EECC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe
Confidence 9998 6664332 333456799999999 7887776667889999998 4543322 3455678999999 999888876
Q ss_pred cCCceEEEEec
Q 002264 934 GADAQVTLCVE 944 (945)
Q Consensus 934 ~~Dg~i~vWdl 944 (945)
+.+ .+..++.
T Consensus 284 ~~~-~l~~~~~ 293 (299)
T 2z2n_A 284 ECD-KIGKLTL 293 (299)
T ss_dssp TTT-EEEEEEE
T ss_pred cCC-cEEEEEc
Confidence 644 4555553
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-13 Score=159.90 Aligned_cols=248 Identities=6% Similarity=-0.073 Sum_probs=159.7
Q ss_pred CCCcEEEEEEeCCCCeEEEEE----eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
|...+.+++|||||++++++. +.+.+|++||+.+++.+.. ..+.+. ....++|+|||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----------------~~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----------------DVIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----------------CCBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----------------cccCcc--cccceEEecCC
Confidence 455799999999999644443 3346899999999876411 001111 12578999999
Q ss_pred CEEEEEECCCc-------------EEEEEccCCccc-ccceeeccccccEEEEEEecCCCeeEEEEEeCCC----cEEEE
Q 002264 419 NYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVW 480 (945)
Q Consensus 419 ~~las~~~dg~-------------i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~----~i~vw 480 (945)
+.|+.++.|.. |++|++.++..- ..+.....|...+.++.|+|||+ +++.++.++ .|.+|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEEE
Confidence 99999988776 999999887532 12222334667899999999999 455444444 67777
Q ss_pred eCCCceEEEecCCCCCEEEEEeeecCCccEEEEEE---cCCeEEEEEccCCCe---eEEecCC-CCeEEEEEEcCCCCEE
Q 002264 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAP-GHWCTTMLYSADGSRL 553 (945)
Q Consensus 481 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~~~~~l 553 (945)
+..+.....+..+...+....+ + +|.+++.+. .++.|.+||+.++.. ...+... ...+..++++ ++..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 258 RPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred cCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7323334455555555555555 3 345444443 258899999877653 2222222 4467888887 55556
Q ss_pred EEEeecCCCCceEEEEeCC-CCceeeEeccccCcceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCee
Q 002264 554 FSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (945)
++... ++..++|... +++..+.+..+....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 334 ~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 334 LEYLK----DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE----TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE----CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66554 5555555433 35555556554333566778889888777543 347899999998874
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.8e-12 Score=134.15 Aligned_cols=238 Identities=11% Similarity=0.018 Sum_probs=162.6
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
...+...+.+++|+|+|+ +++++..++.|.+||..+++... ....+...+.+++|+|+|+
T Consensus 40 ~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~-------------------~~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp EESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSC
T ss_pred EeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEE-------------------EeeCCCCCcceEEECCCCc
Confidence 334667889999999998 78888889999999998776431 1223557899999999999
Q ss_pred EEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC------CCcEEEEeCCCceEEE
Q 002264 420 YVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFN 489 (945)
Q Consensus 420 ~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~------d~~i~vwd~~~~~~~~ 489 (945)
+++++..+ +.|.+||.+++...... .-..+...+.+++++|+|. ++++... .+.|..+|..+..+..
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTP 176 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEE
Confidence 88877666 68999998876543211 1112456799999999998 6666553 3456666644333333
Q ss_pred ecCCCCCEEEEEeeecCCccEE-EEEEcCCeEEEEEccCC-CeeEE------ecCC-CCeEEEEEEcCCCCEEEEEeecC
Q 002264 490 FEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTM-GSRVD------YDAP-GHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~-~~~~~------~~~~-~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+......+..++|++ +++.+ ++.+.++.|.+||++.. ..... .... ...+..++++++|+.+++...
T Consensus 177 ~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-- 252 (333)
T 2dg1_A 177 IIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-- 252 (333)
T ss_dssp EEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET--
T ss_pred eecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC--
Confidence 333444578888876 55645 45556889999998642 22211 1111 146788999999987776642
Q ss_pred CCCceEEEEeCCCCceeeEeccccC-----cceEEEEEcCCCCEEEEEECCC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDS 607 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg 607 (945)
++.|.+||. +++.+..+..... ..+..++|+++++.|++++.++
T Consensus 253 --~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 253 --QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp --TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred --CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 678999998 5666666654322 1467889999988887776553
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-09 Score=130.58 Aligned_cols=486 Identities=8% Similarity=0.034 Sum_probs=281.6
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|.++...++|. |-.|+.+ -+..||..+++... +. . . .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~---~~---~---------~-~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQN---FF---Y---------E-KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEE---EC---C---------E-ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEe---cc---c---------c-ccCCCceEEEEEECCCCCEEEEE
Confidence 5799999999997 3445554 47899987654321 00 0 0 00000118889888888766643
Q ss_pred ECCCcEEEEEccCCcccccceeeccc-ccc-EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec--CCCCCEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAH-VGA-VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE--GHEAPVYS 499 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~-v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~--~~~~~v~~ 499 (945)
. +.+..|+.++++.... ...+ ... |.++...+++. +.+ ++.++.+..|+ .+++.. .+. .....|.+
T Consensus 149 -~-~gl~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g~--lwi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 149 -P-EGLIMFDIKESKFIDD---SFSTAMHKTIASTLYRQGDQ--IYI-GTSTDGLYTYSITQKTFE-KVIPILGTKQIQA 219 (795)
T ss_dssp -T-TEEEEEETTTTEEECS---SSCHHHHTCCEEEEEEETTE--EEE-EESSSCEEEEETTTCCEE-ECC----CCCEEE
T ss_pred -C-CceEEEECCCCEEEec---cCCCCCCcceEEEEECCCCC--EEE-EECCCCEEEEeCCCCeEE-EecCCCCCCeeEE
Confidence 4 4488999876542211 0011 123 88898888886 444 56555688999 554432 321 23456888
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
+.... ++. +..++.++-+..||..+........ .....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQS--PTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEE--TTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcC--CCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 77644 444 5556655558889876654332211 1235799999998888665442 3 58899988
Q ss_pred CCceeeEecc------ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC----CCCCCccEEEEcCCCC
Q 002264 573 EGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----GGLPNLPRLRFSKEGN 642 (945)
Q Consensus 573 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~sp~g~ 642 (945)
++........ .....|.++..+++|. +..|+.++-|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765443221 1223588888888875 566777788999987665433221111 0123588999888887
Q ss_pred EEEEEECCCcEEEEECCCCccccccccCCc---c-ccccCcceeeeeccccc-ceeccCCCCCccccccCCCCCCCcccC
Q 002264 643 LLAVTTADNGFKILANAIGLRSLRAVENPP---F-EALRTPIESVALKVSAS-SAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~-~~~~~~i~~v~~s~~g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
+ ..|+.++.|..|+..++. . ..+.... . ......|.++...++|. +.+
T Consensus 370 l-WiGt~~~Gl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi------------------------ 422 (795)
T 4a2l_A 370 L-WIGTNDGGLNLYNPITQR-F-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI------------------------ 422 (795)
T ss_dssp E-EEEESSSCEEEECTTTCC-E-EEECCC------CCSCSCEEEEEEETTTTEEEE------------------------
T ss_pred E-EEEECCCCeEEEcCCCCc-E-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEE------------------------
Confidence 4 457778789999987652 1 1111110 0 11234567777777776 443
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCC
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~ 797 (945)
|+.++.+..++... +................|.++...++|...+... + .+..|+....
T Consensus 423 --------------gt~~~Gl~~~d~~~----~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~- 481 (795)
T 4a2l_A 423 --------------GTHAGGLSILHRNS----GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQR- 481 (795)
T ss_dssp --------------EETTTEEEEEETTT----CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTT-
T ss_pred --------------EeCcCceeEEeCCC----CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCC-
Confidence 22223344444331 1122211100011345788999888888555543 4 4666653221
Q ss_pred CCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEec-------C
Q 002264 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-------S 870 (945)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~-------~ 870 (945)
.... +..... ...+ ....|.++..+++|++.+... +.|..||..+++. .+. .
T Consensus 482 -----~~~~------~~~~~~---~~~~----~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l 540 (795)
T 4a2l_A 482 -----SFTT------IEKEKD---GTPV----VSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNV 540 (795)
T ss_dssp -----EEEE------CCBCTT---CCBC----CCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGG
T ss_pred -----eEEE------cccccc---cccc----CCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCC
Confidence 1100 000000 0001 346789999999998777665 6688999877665 332 1
Q ss_pred CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEec---C-CCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK---G-HQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 871 h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~---~-h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
....|.++...+ +|.+.+ |+.. -+..||..+++.. .+. + ....|.++...++|.+.+++ ..| |..||
T Consensus 541 ~~~~i~~i~~d~-~g~lWi-gT~~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G-l~~~~ 611 (795)
T 4a2l_A 541 TKLFTNCIYEAS-NGIIWV-GTRE-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-NRG-ISCFN 611 (795)
T ss_dssp GGSCEEEEEECT-TSCEEE-EESS-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-TTE-EEEEE
T ss_pred CCCeeEEEEECC-CCCEEE-EeCC-CceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-CCc-eEEEc
Confidence 234689999988 776554 4444 5889998776543 332 1 23468889999999887765 344 55555
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=135.49 Aligned_cols=239 Identities=7% Similarity=-0.051 Sum_probs=164.3
Q ss_pred cEEEEEEeCCCCeEEE-EEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 346 TVISMDFHPSHQTLLL-VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~lla-sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
...+++++|+|+ +++ +.+.++.|.+|+..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 676 54678899999876543221 011233467889999999966665
Q ss_pred ECCCcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEe
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~ 502 (945)
. ++.|.+||..++... .+. .....+.++++.++|. ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765322 122 2335789999999998 777777788999998 444333322233345678887
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
.+ +|+++++...++.|.+||................+..++++++|..+++.. .++.|.+||........ ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCccee-ecc
Confidence 65 557777777788999999876554433223335688999999996665554 36789999987654333 221
Q ss_pred ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
.....+..++++++|+.+++...++.|+++++...+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 111257889999999877777889999999987544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-11 Score=125.22 Aligned_cols=279 Identities=10% Similarity=-0.036 Sum_probs=189.6
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
....+.+++++++|+ +.++...++.|.+||.. ++... + .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 456899999999998 56666668899999977 44321 0 0223346789999999999888
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEE-EecCCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF-NFEGHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~v~~~~ 501 (945)
+...++.|..||.. ++.. .. .+......+.++++.++|. ++++...++.|..||..++... .+......+.+++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~-~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT-EY-PLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-EE-ECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeE-Ee-cCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77667889999987 5432 11 2223446789999999998 7777776889999995466542 2333455688888
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
+.+ ++++.++...++.|..||. .+.... ........+..+++.++|...++.. ..+.|.+||. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEEE
Confidence 765 5566666666788999987 333332 2223345688999999997666543 2567999998 55544332
Q ss_pred ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
.......+..++++++|+..++...++.|..|+. ++... .+........+.+++++++|++.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2112235788999999886665556789999998 45433 333332234689999999998666544 4 6766665
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-12 Score=136.32 Aligned_cols=282 Identities=11% Similarity=0.099 Sum_probs=186.6
Q ss_pred EEeCCCCeEEEEEeC----cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE-
Q 002264 351 DFHPSHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF- 425 (945)
Q Consensus 351 ~fsp~g~~llasgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~- 425 (945)
...|+++.++++-.. ++.|.+.|..+++.+.. +.....+ . +++||||+++.++.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P-~-va~spDG~~lyVan~ 97 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP-N-PVVADDGSFIAHAST 97 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC-E-EEECTTSSCEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC-c-EEECCCCCEEEEEcc
Confidence 446888875555443 67999999999887642 2212233 3 99999999887775
Q ss_pred ---------CCCcEEEEEccCCcccccceeecc----ccccEEEEEEecCCCeeEEEEEe--CCCcEEEEe-CCCceEEE
Q 002264 426 ---------TKHLIQLYSYAGSNDLRQHSQIDA----HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 426 ---------~dg~i~vwd~~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~~~~l~s~s--~d~~i~vwd-~~~~~~~~ 489 (945)
.++.|.+||..+++.+..+..-.+ .......++|+|||+ +++.+. .++.|.++| .+++.+.+
T Consensus 98 ~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv~t 175 (386)
T 3sjl_D 98 VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFKRM 175 (386)
T ss_dssp EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 367899999999877664321110 012456799999999 455444 378999999 88888887
Q ss_pred ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEEec----CCCCeE-EEEEE-cCCCCEEEEEeecCCC
Q 002264 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYD----APGHWC-TTMLY-SADGSRLFSCGTSKDG 562 (945)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~----~~~~~i-~~~~~-s~~~~~l~~~~~~~d~ 562 (945)
+.... .. .+.|.+ .+.+++.+.||.+.+.++.. +....... .....+ ....| .++|+++++..
T Consensus 176 I~v~g--~~--~~~P~g-~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~----- 245 (386)
T 3sjl_D 176 LDVPD--CY--HIFPTA-PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY----- 245 (386)
T ss_dssp EECCS--EE--EEEEEE-TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-----
T ss_pred EECCC--cc--eeecCC-CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-----
Confidence 75322 11 122432 35677888999999999876 33322111 111122 12355 36776655442
Q ss_pred CceEEEEeCCCCc--eeeEec---------cccCcceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeeEE
Q 002264 563 DSFLVEWNESEGT--IKRTYA---------GFRKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILT 621 (945)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 621 (945)
++.+++.|..+.. ....+. +........++++++++.+++... .+.|.++|+.+++.+.
T Consensus 246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 6789999997654 333332 111112334778999999888653 2579999999999999
Q ss_pred EeecCCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCCcccccccc
Q 002264 622 STDAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 669 (945)
.+.... .+..+++++|++ .|++.. .++.|.++|..++ +.++.+.
T Consensus 326 ~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~ 371 (386)
T 3sjl_D 326 KFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN 371 (386)
T ss_dssp EEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred EEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEec
Confidence 987653 578999999997 666654 4899999999988 4444443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-12 Score=133.94 Aligned_cols=239 Identities=8% Similarity=-0.095 Sum_probs=165.8
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCce
Q 002264 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (945)
Q Consensus 408 ~V~~i~~s~~g~~la-s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~ 486 (945)
...+++++++|++++ +.+.++.|.+|+..++.... ....+...+.+++++++|. ++++.. ++.|.+||..+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 688999999999777 44678899999976543221 1123345688999999998 666666 8899999955554
Q ss_pred EEEecC-CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 487 LFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 487 ~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
...+.. ....+.++++.+ +|.++++...++.|.+|+..+.............+..++++++|+.+++... ++.
T Consensus 99 ~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~~ 172 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NNR 172 (270)
T ss_dssp CEECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GTE
T ss_pred EeeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CCE
Confidence 444432 235688898866 5577777777889999976544333322222235678999999986655442 678
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
|.+||.............. ..+..++++++|..+++...++.|.+|+..+..... ... .+...+.+++++++|++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEE
T ss_pred EEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEE
Confidence 9999988765543322222 357889999999766666678899999987654433 221 2223678999999999888
Q ss_pred EEECCCcEEEEECCCC
Q 002264 646 VTTADNGFKILANAIG 661 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~~ 661 (945)
+...++.|++++....
T Consensus 250 ~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEGGGTEEEEECCCGG
T ss_pred EECCCCEEEEEcCCCc
Confidence 8888999999998654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-09 Score=126.72 Aligned_cols=488 Identities=9% Similarity=0.022 Sum_probs=283.3
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|+++.-.++|. |-.|+.+| +..||-.+ ++.+..... ....+ ....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~----~~~~l--~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNED----DPNSI--ANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTT----CTTSC--SCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCC----CCCcc--cccceeEEEECCCCCEEE-E
Confidence 4799999999995 55666666 45566432 111110000 00001 246799999999988665 4
Q ss_pred ECCCcEEEEEccCCcccccceeecccc----ccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC-C-CCC-
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-H-EAP- 496 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~----~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~-~-~~~- 496 (945)
+.+| +..||..+++.. .+.... ..|.++...++|. +.+ ++. +.+..|| .+++ ...+.. . ...
T Consensus 105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~-~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESK-FIDDSFSTAMHKT 174 (795)
T ss_dssp ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTE-EECSSSCHHHHTC
T ss_pred eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCE-EEeccCCCCCCcc
Confidence 4555 899998765422 122111 1288898888887 444 343 5588999 4443 322221 1 112
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
|.++.... ++. +..++.++.+..|+..+....... ......|.++...+++...+... ++-+..||..+++
T Consensus 175 i~~i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQ--GDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEE--TTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECC--CCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 77777654 444 555676656888987665433221 12245688888888777655442 3348899988766
Q ss_pred eeeEeccc------cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC-----CCCCCccEEEEcCCCCEE
Q 002264 576 IKRTYAGF------RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 576 ~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~sp~g~~l 644 (945)
........ ....+.++...++|.. ..|+.+ -|.+|+..++......... -....|.++...++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l- 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM- 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-
Confidence 54332211 1235888888887764 455555 5899998877654433211 11246889999998874
Q ss_pred EEEECCCcEEEEECCCCccccccccCC--ccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCc
Q 002264 645 AVTTADNGFKILANAIGLRSLRAVENP--PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (945)
..|+.++.|..|+..++. +..+... ........|.++...++|.+.+
T Consensus 324 Wigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi----------------------------- 372 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI----------------------------- 372 (795)
T ss_dssp EEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSCEEE-----------------------------
T ss_pred EEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-----------------------------
Confidence 557777889988875542 1111111 1112234467777777776553
Q ss_pred cCCCCCccccCCCCCCcccccceeecCCcceeeecCC-C---CCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCC
Q 002264 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE-S---TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (945)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-~---~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~ 798 (945)
|+.++.+..|+... ..+....... . ......|.++...++|..|..++.++.+..|+.....
T Consensus 373 ---------Gt~~~Gl~~~~~~~----~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~- 438 (795)
T 4a2l_A 373 ---------GTNDGGLNLYNPIT----QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ- 438 (795)
T ss_dssp ---------EESSSCEEEECTTT----CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC-
T ss_pred ---------EECCCCeEEEcCCC----CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-
Confidence 33334455555431 1121111100 0 0124578899998888845555665667777643211
Q ss_pred CCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecC------CC
Q 002264 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS------PP 872 (945)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~------h~ 872 (945)
.. .+..... .+ ....|.++...++|++.+... +.|.+||..+++....... ..
T Consensus 439 -----~~------~~~~~~~-----~l----~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 439 -----VE------NFNQRNS-----QL----VNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVS 497 (795)
T ss_dssp -----EE------EECTTTS-----CC----SCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred -----EE------EeecCCC-----Cc----CCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCC
Confidence 10 0000000 01 346789999999998776655 5688999887655332211 23
Q ss_pred CCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEec-------CCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-------GHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 873 ~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
..|.++...+ ++++.+ |+. +-|..||..+++. .+. .....|.++...++|.+.+++.. | |..||.
T Consensus 498 ~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-G-l~~~d~ 569 (795)
T 4a2l_A 498 KQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-G-FYCFNE 569 (795)
T ss_dssp CCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-C-EEEEET
T ss_pred ceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-C-ceeECC
Confidence 5689999988 776554 444 4599999887765 332 13457899999999987775543 5 666663
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-11 Score=127.76 Aligned_cols=275 Identities=7% Similarity=-0.063 Sum_probs=178.3
Q ss_pred EeCCCCeEEEEEe-CcC---cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE--
Q 002264 352 FHPSHQTLLLVGS-SNG---EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-- 425 (945)
Q Consensus 352 fsp~g~~llasgs-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~-- 425 (945)
..|++++++++-. ... +|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~~ 86 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALASTS 86 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEecc
Confidence 4467775444332 222 889999998876532 2212233 899999999999886
Q ss_pred --------CCCcEEEEEccCCcccccceee-cc---ccccEEEEEEecCCCeeEEEEEeC--CCcEEEEeCCCceEEE-e
Q 002264 426 --------TKHLIQLYSYAGSNDLRQHSQI-DA---HVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWELSGRKLFN-F 490 (945)
Q Consensus 426 --------~dg~i~vwd~~~~~~~~~~~~~-~~---h~~~v~~l~~s~~~~~~~l~s~s~--d~~i~vwd~~~~~~~~-~ 490 (945)
.++.|.+||..+.+.+..+..- .. +......++|+|||+ +++.+.. ++.|.++|.+++.+.. +
T Consensus 87 ~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD~t~~~~~~~i 164 (373)
T 2mad_H 87 FSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVVQGGSSDDQLL 164 (373)
T ss_pred ccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEECCCCEEeEEc
Confidence 3678999999887665533211 00 012355899999999 5555543 5789999933444444 3
Q ss_pred cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-----CCCCe-EEEEEEcCCCCEEEEEeecCCCCc
Q 002264 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHW-CTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
. .... +.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+. .+
T Consensus 165 ~-~~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~ 234 (373)
T 2mad_H 165 S-SPTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----SG 234 (373)
T ss_pred C-CCce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----Cc
Confidence 3 2222 33444433 46677888999999999 665553221 11111 233456676665554443 66
Q ss_pred eEEEEeCCCCc--eeeEeccc---------cCcceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeeEEEe
Q 002264 565 FLVEWNESEGT--IKRTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTST 623 (945)
Q Consensus 565 ~i~iwd~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 623 (945)
.+.+.|...+. .+..+... .......+.++++++.++++.. .+.|.++|..+++.+..+
T Consensus 235 ~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i 314 (373)
T 2mad_H 235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE
Confidence 89999987553 22222110 0112334788999998888653 357999999999999988
Q ss_pred ecCCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCCc
Q 002264 624 DAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGL 662 (945)
Q Consensus 624 ~~~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~~ 662 (945)
.... ...+++|+|||+ .++++. .++.|.++|..+++
T Consensus 315 ~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 315 SLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 7543 469999999999 777776 48999999999883
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-12 Score=153.51 Aligned_cols=246 Identities=11% Similarity=0.027 Sum_probs=160.9
Q ss_pred CCCccEEEEEEcCCCCEEEEEECC-----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCc--
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~-- 476 (945)
+|...+..++|||||++||.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455678999999999999987654 3599999999876431 112222467899999 8 5666655543
Q ss_pred ------------EEEEe-CCCce--EEEec--CCCCCEEEEEeeecCCccEEEEEEcCC-----eEEEEEccCC--CeeE
Q 002264 477 ------------IKVWE-LSGRK--LFNFE--GHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTM--GSRV 532 (945)
Q Consensus 477 ------------i~vwd-~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~ 532 (945)
|++|+ .++.. ...+. .+...+.++.|++ ||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88899 44431 22333 3334577888865 678888777554 8999999876 3133
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEE
Q 002264 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 533 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 610 (945)
.+..+...+... ++|+|+.|+..+........|.+||+.++ .....+..+ ...+..+.++ ++..+++...|+..+
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 444443333444 34899999888754333677999999875 334444433 3356667776 455677777888777
Q ss_pred EEECC-CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC----CCcEEEEECCCCc
Q 002264 611 FWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (945)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~----dg~i~iw~~~~~~ 662 (945)
+|.++ ++.....+..+. ...+..++++|+++.++.... .++|++||+.++.
T Consensus 388 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 76544 455556665432 236788999999886663322 4789999998774
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-11 Score=128.53 Aligned_cols=295 Identities=10% Similarity=-0.008 Sum_probs=182.7
Q ss_pred EcCCCCEEEEEeecCCCCc---eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----------CCCcEEEE
Q 002264 546 YSADGSRLFSCGTSKDGDS---FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----------EDSQIKFW 612 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw 612 (945)
..|++++++++... +.. .|.++|..+++.+..+..... . .++++|++++++++. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~--~~~~~~~v~v~D~~t~~~~~~i~~g~~--p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPA--HHSAIIQQWVLDAGSGSILGHVNGGFL--P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCc--ccCCccEEEEEECCCCeEEEEecCCCC--C-CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 44778777766320 122 789999999998888775433 3 799999999999986 36789999
Q ss_pred ECCCCeeEEEeecCCC-----CCCccEEEEcCCCCEEEEEEC--CCcEEEEECCCCcccccc-ccCCccccccCcceeee
Q 002264 613 DMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTA--DNGFKILANAIGLRSLRA-VENPPFEALRTPIESVA 684 (945)
Q Consensus 613 d~~~~~~~~~~~~~~~-----~~~v~~v~~sp~g~~l~~~~~--dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~i~~v~ 684 (945)
|..+.+.+..+...+. ......++|+|||++|+++.. ++.|.++| .++ +.... +... .++.
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~-~~~~~~i~~~---------~~~~ 171 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG-SSDDQLLSSP---------TCYH 171 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC-CEEeEEcCCC---------ceEE
Confidence 9999988887765310 012458999999999998874 47899999 887 33333 2211 1233
Q ss_pred ecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCccee-eecCCCCCC
Q 002264 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRL-VTMPESTDT 763 (945)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~ 763 (945)
+.|++...+ ++.+.||.+.+++. .......... ..+.+ .
T Consensus 172 ~~~~~~~~~------------------------------------~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~---~ 211 (373)
T 2mad_H 172 IHPGAPSTF------------------------------------YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA---A 211 (373)
T ss_pred EEeCCCceE------------------------------------EEEcCCCCEEEEEC-CCcEEEEEeccccccC---C
Confidence 444443322 23333455555554 2111100000 00000 1
Q ss_pred ccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCC
Q 002264 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (945)
Q Consensus 764 ~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg 843 (945)
..-.....+.+++..++..+..+.+.+.|+...... . +.-|+..+........ .......+++++|+
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~----v-----~~~~~~~~~~~~~~~~----~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT----N-----KAPIDALSGGRKADTW----RPGGWQQVAYLKSS 278 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcce----E-----eeeeeecCCcccccce----ecCceEeEEECCCC
Confidence 111233567777766666667788888776432110 0 0112221111110000 12234457899999
Q ss_pred ceEEecC-----------CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCc-eEEEee-cCceEEEEecccceEEEE
Q 002264 844 SYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDEVKSK 910 (945)
Q Consensus 844 ~~la~~s-----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~-~lasg~-~dg~v~vwd~~~~~~~~~ 910 (945)
+.+.++. ++.|.++|+.+++.+.++.. .....+++|+| |++ +++++. .++.|.|||+.+++.+.+
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 8777653 24699999999999998863 34689999999 777 777776 589999999999998887
Q ss_pred e
Q 002264 911 L 911 (945)
Q Consensus 911 l 911 (945)
+
T Consensus 357 i 357 (373)
T 2mad_H 357 T 357 (373)
T ss_pred e
Confidence 4
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-12 Score=128.48 Aligned_cols=215 Identities=11% Similarity=0.011 Sum_probs=165.4
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCC-
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE- 494 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~- 494 (945)
.+++|++++.|+.|.+||.++|+.+. .+..+. ..+.+++++|+|+ +++ +.++.|..||.+|+.+..+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w---~~~~~~~~~~~~~~~~pdG~--ilv--s~~~~V~~~d~~G~~~W~~~~~~~ 76 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW---EYPLEKGWECNSVAATKAGE--ILF--SYSKGAKMITRDGRELWNIAAPAG 76 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE---EEECCTTCCCCEEEECTTSC--EEE--ECBSEEEEECTTSCEEEEEECCTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE---EeCCCccCCCcCeEECCCCC--EEE--eCCCCEEEECCCCCEEEEEcCCCC
Confidence 46789999999999999998998765 444454 4688999999998 677 34788999998899998888653
Q ss_pred CCEEEEEeeecCCccEEEEEEc-CCeEEEEEccCCCeeEEecCCC------CeEEEEEEcCCCCEEEEEeecCCCCceEE
Q 002264 495 APVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPG------HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~~~d~~~~i~ 567 (945)
..+.++.+.+ +|+++++.+. ++.|..+|. .++.+..+.... .....+++.++|+++++... ++.|.
T Consensus 77 ~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~----~~~v~ 149 (276)
T 3no2_A 77 CEMQTARILP--DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA----TSEVR 149 (276)
T ss_dssp CEEEEEEECT--TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----TTEEE
T ss_pred ccccccEECC--CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----CCEEE
Confidence 4677777654 7789988887 788887875 455555443211 13445678899999988763 88999
Q ss_pred EEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC----CCCCccEEEEcCCCCE
Q 002264 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----GLPNLPRLRFSKEGNL 643 (945)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~sp~g~~ 643 (945)
.||.. |+.+.++.... ....+.+.++++.+++++.++.|..+|..+|+.+..+.... ....+..++..++|.+
T Consensus 150 ~~d~~-G~~~w~~~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 150 EIAPN-GQLLNSVKLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp EECTT-SCEEEEEECSS--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred EECCC-CCEEEEEECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 99998 99988887653 34557788999999998888899999999999998886432 1123678888899998
Q ss_pred EEEEE
Q 002264 644 LAVTT 648 (945)
Q Consensus 644 l~~~~ 648 (945)
+++..
T Consensus 227 ~v~~~ 231 (276)
T 3no2_A 227 YICNW 231 (276)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-10 Score=119.51 Aligned_cols=278 Identities=11% Similarity=0.050 Sum_probs=183.1
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
....+.++++.++|+..++.. .++.|.+||.. ++............+..++++++++.+++...++.|..||..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQH----KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEET----TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCCcceeeECCCCCEEEEcC----CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 345788999999998777654 26889999988 554432222222357889999999877766668889999987
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccC
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~ 696 (945)
++.. .+........+.+++++++|+++++...++.|..++.. +.. . .+
T Consensus 92 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~-~~---------------------------- 139 (300)
T 2qc5_A 92 GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y-EY---------------------------- 139 (300)
T ss_dssp SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E-EE----------------------------
T ss_pred CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E-Ec----------------------------
Confidence 5543 33332222468899999999887776667788888765 311 0 00
Q ss_pred CCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCC
Q 002264 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (945)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 776 (945)
.++. ....+.++++.++|
T Consensus 140 -----------------------------------------------------------~~~~---~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 140 -----------------------------------------------------------DLPN---KGSYPAFITLGSDN 157 (300)
T ss_dssp -----------------------------------------------------------ECSS---TTCCEEEEEECTTS
T ss_pred -----------------------------------------------------------cCCC---CCCCceeEEECCCC
Confidence 0000 12245678888888
Q ss_pred CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEE
Q 002264 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKIS 855 (945)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~ 855 (945)
+..++...++.|..|+. .+... ...... ....+.+++++++|+++++.. .+.|.
T Consensus 158 ~l~v~~~~~~~i~~~~~-------~g~~~----------------~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-------TGKLE----------------EYPLPT--NAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp SEEEEETTTTEEEEECT-------TCCEE----------------EEECSS--TTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CEEEEecCCCeEEEECC-------CCcEE----------------EeeCCC--CCCCcceEEECCCCCEEEEccCCCEEE
Confidence 85555555677777753 11111 100111 345678999999998777765 57899
Q ss_pred EEeccCceEEEE-ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEE-EecCCCcceeEEEecCCcceeeee
Q 002264 856 LFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 856 iwd~~~~~~~~~-~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~l~s~ 933 (945)
+|+. +++.... +..+...+.++++++ ++++.++...++.|.+||. +++... .+......+.++++.++|+.+++.
T Consensus 213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 213 RITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred EEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence 9998 4554332 333456689999999 7887776666789999998 454332 234345678999999999877766
Q ss_pred cCCceEEEEec
Q 002264 934 GADAQVTLCVE 944 (945)
Q Consensus 934 ~~Dg~i~vWdl 944 (945)
. . .|..+|.
T Consensus 290 ~-~-~i~~~~p 298 (300)
T 2qc5_A 290 K-C-KIGKLNL 298 (300)
T ss_dssp S-S-EEEEEEE
T ss_pred c-C-ceEEeCC
Confidence 5 4 6666664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-11 Score=130.82 Aligned_cols=245 Identities=9% Similarity=0.025 Sum_probs=168.1
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
.....+++.. .++.++...++.|.+||..+++.+.. +. .......++++++++..++.
T Consensus 44 ~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~-------------------i~-~~~~p~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 44 DVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGR-------------------IT-GFTSPRYIHFLSDEKAYVTQ 101 (328)
T ss_dssp SCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEE-------------------EE-CCSSEEEEEEEETTEEEEEE
T ss_pred ccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEE-------------------cC-CCCCCcEEEEeCCCeEEEEE
Confidence 3567787753 34677777789999999999887632 21 23568899999999555544
Q ss_pred ECCCcEEEEEccCCcccccceeecc---ccccEEEEEEecCCCeeEEEEEe-CCCcEEEEe-CCCceEEEecCCCCCEEE
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd-~~~~~~~~~~~~~~~v~~ 499 (945)
..++.|.+||..+++....+. ... +......+++ . +.. ++++.. .++.|.+|| .+++.+..+.... ....
T Consensus 102 ~~~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~-~-~~~-lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~ 176 (328)
T 3dsm_A 102 IWDYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQ-Y-GKY-VYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTS 176 (328)
T ss_dssp BSCSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEE-E-TTE-EEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCC
T ss_pred CCCCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEE-E-CCE-EEEEcCCCCCEEEEEECCCCeEEEEEEcCC-Cccc
Confidence 478999999999887554221 111 1114556777 3 442 444443 488999999 7788777765433 3456
Q ss_pred EEeeecCCccEEEEEEcC----------CeEEEEEccCCCeeEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 500 ICPHHKENIQFIFSTAID----------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
+++++ +|++++++..+ +.|.++|..+.+....+... +.....++++|+++.++++. ..|.+
T Consensus 177 i~~~~--dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~------~~v~~ 248 (328)
T 3dsm_A 177 LVMDK--YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN------NDIWR 248 (328)
T ss_dssp CEECT--TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES------SSEEE
T ss_pred eEEcC--CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc------cEEEE
Confidence 66654 66766665544 78999999887766565543 34678999999999998863 38999
Q ss_pred EeCCCCceeeE-eccccCcceEEEEEcCCC-CEEEEE----ECCCcEEEEECCCCeeEEEeec
Q 002264 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQ-NHFLAV----GEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~----~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
||..+++.... +..........++++|++ ..+++. ..++.|.+||.. ++.+..+..
T Consensus 249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 99988876421 111112357789999954 444444 468899999998 888887764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-11 Score=127.26 Aligned_cols=295 Identities=8% Similarity=-0.033 Sum_probs=191.4
Q ss_pred CCccEEEEEEcC-----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec------CCCCceEEEEeCCCC
Q 002264 506 ENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEG 574 (945)
Q Consensus 506 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~~~ 574 (945)
+++..+++.... +.|.++|..+.+.+..+.....+ .+.++|||++++++... +..++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 455656555542 69999999999888887766655 89999999999887521 012568999999999
Q ss_pred ceeeEeccc--c----CcceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCC-CEEE
Q 002264 575 TIKRTYAGF--R----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NLLA 645 (945)
Q Consensus 575 ~~~~~~~~~--~----~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~l~ 645 (945)
+.+..+... . ......+.++|+|++++++.. ++.|.+.|+.+++.+..+...+ +....|+| ..++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~v 233 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVFY 233 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEEE
Confidence 998877532 0 112345889999999999874 5789999999999999887632 13344433 5566
Q ss_pred EEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCC
Q 002264 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (945)
+.+.||.+.+.+..++ .......
T Consensus 234 ~~~~dG~~~~V~~~~~-~v~~~~~-------------------------------------------------------- 256 (426)
T 3c75_H 234 MNCRDGSLARVDFADG-ETKVTNT-------------------------------------------------------- 256 (426)
T ss_dssp EEETTSSEEEEECCTT-CCEEEEC--------------------------------------------------------
T ss_pred EEcCCCCEEEEECCCC-cEEEEee--------------------------------------------------------
Confidence 6777888888877443 1110000
Q ss_pred CCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCcee
Q 002264 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (945)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (945)
.+++... . .....+.+++++..++.....+.+.+.|+.......
T Consensus 257 -------------~~~~v~~-----------------~-p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v----- 300 (426)
T 3c75_H 257 -------------EVFHTED-----------------E-LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF----- 300 (426)
T ss_dssp -------------CCCSCTT-----------------S-CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE-----
T ss_pred -------------eeeccCC-----------------C-ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE-----
Confidence 0111100 0 000123456677666666666777777653221100
Q ss_pred eeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-----------CCeEEEEeccCceEEEEecCCCCC
Q 002264 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPPA 874 (945)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-----------d~~i~iwd~~~~~~~~~~~~h~~~ 874 (945)
+.-|............ .......+++++|++++.++. ++.|.++|+.+++.+.++.. ...
T Consensus 301 ----~~~~~~~~~~~i~~g~----~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~ 371 (426)
T 3c75_H 301 ----RAPIEALTEAERADDW----RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHE 371 (426)
T ss_dssp ----CCCEESSCTTTGGGTE----EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEE
T ss_pred ----eeeeeecccccccccc----ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCC
Confidence 0001111000000000 112233478999988766653 24699999999999999863 235
Q ss_pred eeEEEeecCCCc-eEEEee-cCceEEEEecccceEEEEe
Q 002264 875 STFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDEVKSKL 911 (945)
Q Consensus 875 i~~l~~s~~~~~-~lasg~-~dg~v~vwd~~~~~~~~~l 911 (945)
...++|+| |++ ++++.. .++.|.|+|+.+++.+.++
T Consensus 372 P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 372 IDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 89999999 777 777777 5899999999999999887
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-11 Score=125.43 Aligned_cols=249 Identities=11% Similarity=0.058 Sum_probs=164.5
Q ss_pred cCCCcEEEEEEeCCCCeEEEE-------EeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLV-------GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llas-------gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
..-..+.+++|+++|. ++++ +..++.|.+||..+++.... . . ....++...+.++++
T Consensus 15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQC 78 (314)
T ss_dssp CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEE
T ss_pred ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEE
Confidence 3445778999999997 6777 56788999999877764310 0 0 001124467899999
Q ss_pred cCC-CCEEEEEECCCcEEEEEccCCccccc-ceeec-cccccEEEEEEecCCCeeEEEEEeCC---------------Cc
Q 002264 415 SPD-GNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQID-AHVGAVNDLAFAYPNKLLCVVTCGDD---------------KL 476 (945)
Q Consensus 415 s~~-g~~las~~~dg~i~vwd~~~~~~~~~-~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~d---------------~~ 476 (945)
+++ |+++++. ..+.|.+||.+ ++.... ..... .....+.++++.++|. ++++...+ +.
T Consensus 79 ~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 79 DRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp CSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence 999 7655554 44479999988 653221 11111 1224588999999998 66666544 56
Q ss_pred EEEEeCCCceEEEecCCCCCEEEEEee--ecCCccEEEEE-EcCCeEEEEEcc-CCCe-----eEEecCCC-CeEEEEEE
Q 002264 477 IKVWELSGRKLFNFEGHEAPVYSICPH--HKENIQFIFST-AIDGKIKAWLYD-TMGS-----RVDYDAPG-HWCTTMLY 546 (945)
Q Consensus 477 i~vwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~ 546 (945)
|..||..++... +..+......++++ .+++++.++.+ ..++.|.+||++ .+.. ...+..+. .....+++
T Consensus 155 l~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 155 IYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EEEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred EEEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 777774455433 33334456788887 11355555444 567899999986 3321 11222222 56788999
Q ss_pred cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCC
Q 002264 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN 616 (945)
Q Consensus 547 s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (945)
+++|+.+++... ++.|.+||..+++....+..+.. .+.+++++++++.|++++ .++.|..|++..
T Consensus 234 d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 234 DEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp BTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999987777653 67899999987877766665543 678899999999666655 568899999764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-07 Score=113.46 Aligned_cols=497 Identities=11% Similarity=0.067 Sum_probs=280.0
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..|+|+.-.++|. |-.|+.+| +..||-.+- +.+..... ......+ ....|.++...++|..|-.|
T Consensus 19 n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~f--------~~~~~~~~--~~~~~~l--~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGF--LWFATEEG-LNKFDGTRF--------ITYYKEEQ--SSSVQSI--TGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSC--EEEEESSC-EEEECSSSE--------EEECCCSS--CSSSCCC--SCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCC--EEEccCCc-CccccCCce--------EEEEcCCC--CCccccc--cccccceEEEcCCCCEEEEE
Confidence 4899999999995 55666666 556774321 11111000 0000001 23569999999988845557
Q ss_pred ECCCcEEEEEccCCccccccee-ecc---ccccEEEEEEec--CCCeeEEEEEeCCCcEEEEeCCCceEEEecC------
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQ-IDA---HVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWELSGRKLFNFEG------ 492 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~-~~~---h~~~v~~l~~s~--~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~------ 492 (945)
+.++-+..||..+++....... ... ....|.++.... +|. +..++.++.+..+|........+..
T Consensus 84 t~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l 160 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPAL 160 (781)
T ss_dssp ESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTTC
T ss_pred eCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccCC
Confidence 7774599999887543211000 000 123688888877 665 3445545568889943333444421
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-------cCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
....|.++.... ++ .|..++.++-+..||..+....... ......|.++...++|...+... . -
T Consensus 161 ~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~-G 231 (781)
T 3v9f_A 161 PSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K-G 231 (781)
T ss_dssp SCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-E
T ss_pred CccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-c
Confidence 134577776544 43 4556777766888887665432211 11235688999888887666542 3 6
Q ss_pred EEEEeCCCCceeeEecc------ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee-------cC-----C
Q 002264 566 LVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-------AE-----G 627 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~-----~ 627 (945)
+.+||..+++....... .....+.++...++| .+..|+..+-|.+++..++....... .. -
T Consensus 232 l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 310 (781)
T 3v9f_A 232 LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSL 310 (781)
T ss_dssp EEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSB
T ss_pred HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCC
Confidence 89999877655432211 122357888887766 46667775678899987765432221 10 1
Q ss_pred CCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCC-----ccccccCcceeeeecccccceeccCCCCCcc
Q 002264 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP-----PFEALRTPIESVALKVSASSAVSSGTPANCK 702 (945)
Q Consensus 628 ~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~ 702 (945)
....|.++...++|. |..|+.++.|..++..+.. ...+... ........|.++...++|.+.+
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi--------- 378 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI--------- 378 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSCEEE---------
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCCEEE---------
Confidence 123688899988886 4566767788888876542 1111110 1111233466777666666543
Q ss_pred ccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEe
Q 002264 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (945)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 782 (945)
|+.++.+..++...... .... .........|.++...++|...+ +
T Consensus 379 -----------------------------gt~~~Gl~~~~~~~~~~----~~~~-~~~~~~~~~v~~i~~d~~g~lWi-g 423 (781)
T 3v9f_A 379 -----------------------------GTDGGGINVFENGKRVA----IYNK-ENRELLSNSVLCSLKDSEGNLWF-G 423 (781)
T ss_dssp -----------------------------EEBSSCEEEEETTEEEE----ECC------CCCSBEEEEEECTTSCEEE-E
T ss_pred -----------------------------EeCCCcEEEEECCCCeE----EEcc-CCCCCCCcceEEEEECCCCCEEE-E
Confidence 33334455555432111 1000 00011346788888888887544 4
Q ss_pred eecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCc
Q 002264 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF 862 (945)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~ 862 (945)
+.++.+..++.. ++......... .....|.++...++|++.+... +.|..||..++
T Consensus 424 t~~~Gl~~~~~~----------------------~~~~~~~~~~~-~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 424 TYLGNISYYNTR----------------------LKKFQIIELEK-NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASK 479 (781)
T ss_dssp ETTEEEEEECSS----------------------SCEEEECCSTT-TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSS
T ss_pred eccCCEEEEcCC----------------------CCcEEEeccCC-CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCC
Confidence 544556666421 11111000000 0346789999988888766555 66899998776
Q ss_pred eEEEEecCC-----CCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC----CCcceeEEEecCCcceeeee
Q 002264 863 KVMTTFMSP-----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG----HQKRITGLAFSTSLNILVSS 933 (945)
Q Consensus 863 ~~~~~~~~h-----~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~l~s~ 933 (945)
+........ ...|.++...+ ++++.+ |+.++-+..||..+++.. .+.. ....|.++...++|.+.++.
T Consensus 480 ~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 480 KVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT 556 (781)
T ss_dssp SCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred eEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence 543332212 35699999988 776554 555445888998766533 3321 23568999999999877755
Q ss_pred cCCceEEEEec
Q 002264 934 GADAQVTLCVE 944 (945)
Q Consensus 934 ~~Dg~i~vWdl 944 (945)
. +|.|..||.
T Consensus 557 ~-~Glv~~~d~ 566 (781)
T 3v9f_A 557 G-EGLVCFPSA 566 (781)
T ss_dssp T-TEEEEESCT
T ss_pred C-CCceEEECC
Confidence 4 675466653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=147.82 Aligned_cols=247 Identities=9% Similarity=-0.035 Sum_probs=154.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
|...+..++|||||++++++.+.+| +|++||+.+++.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 3347899999999997444433333 699999999876421 001122357899999
Q ss_pred CEEEEEECCCc--------------EEEEEccCCcccc-cceeeccccccEEEEEEecCCCeeEEEEEeC-----CCcEE
Q 002264 419 NYVGVAFTKHL--------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIK 478 (945)
Q Consensus 419 ~~las~~~dg~--------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-----d~~i~ 478 (945)
+.|+.++.++. |++|++.++.... .+.....+...+..+.|+|||+ +++..+. ...|.
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEE
Confidence 99998887654 8899987765321 1112223444689999999999 4444443 34899
Q ss_pred EEe-CCC--ceEEEecCCCCCEEEEEeeecCCccEEEEEEc----CCeEEEEEccCCC-e-eEEecCCCCeEEEEEEcCC
Q 002264 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-S-RVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 479 vwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~-~~~~~~~~~~i~~~~~s~~ 549 (945)
+|| .++ +....+..+...+.... .+ +|..|+..+. ++.|.+||+.++. . ...+..+...+..+.++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~-~~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFV-DG--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEE-EE--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEE-ec--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 554 31455555555554443 34 4566766665 3459999988742 2 33333444466677776 4
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCee
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (945)
+..+++... ++...|.++++ ++...+.+..+....+..+.++|+++.++... ..+.|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 445555543 22334555565 35555556543334677888999887666432 357899999998873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=123.59 Aligned_cols=245 Identities=12% Similarity=0.032 Sum_probs=163.6
Q ss_pred CCccEEEEEEcCCCCEEEE-------EECCCcEEEEEccCCcccccce-eeccccccEEEEEEecC-CCeeEEEEEeCCC
Q 002264 405 VPISVSRVAWSPDGNYVGV-------AFTKHLIQLYSYAGSNDLRQHS-QIDAHVGAVNDLAFAYP-NKLLCVVTCGDDK 475 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las-------~~~dg~i~vwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~~-~~~~~l~s~s~d~ 475 (945)
.-....+++|+++|+++++ +..++.|.+||..+++...... ...++...+.+++++++ |. ++++.. .+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CC
Confidence 3346789999999998888 5778899999988775432100 01125567999999999 65 445444 44
Q ss_pred cEEEEeCCCceEEE-ecC----CCCCEEEEEeeecCCccEEEEEEcC---------------CeEEEEEccCCCeeEEec
Q 002264 476 LIKVWELSGRKLFN-FEG----HEAPVYSICPHHKENIQFIFSTAID---------------GKIKAWLYDTMGSRVDYD 535 (945)
Q Consensus 476 ~i~vwd~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~ 535 (945)
.|.+||..++.... ... ....+.++++.+ +|.++++...+ +.|..||.. ++. ..+.
T Consensus 93 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (314)
T 1pjx_A 93 GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVD 168 (314)
T ss_dssp EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEE
T ss_pred CEEEEeCCCCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEec
Confidence 78999944654332 221 123477888865 56677666554 566666654 332 2222
Q ss_pred CCCCeEEEEEEc----CCCCEEEEEeecCCCCceEEEEeCC-CCce-----eeEeccccCcceEEEEEcCCCCEEEEEEC
Q 002264 536 APGHWCTTMLYS----ADGSRLFSCGTSKDGDSFLVEWNES-EGTI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 536 ~~~~~i~~~~~s----~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
........++++ ++++.++++.. .++.|.+||.. +++. ...+..+.......++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 222346788999 99987766542 36789999976 4432 22233222024677999999988888778
Q ss_pred CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCC
Q 002264 606 DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (945)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~ 661 (945)
++.|.+||..+++.+..+..+. ..+.+++++|+|+.|++++ .++.|..|++...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 8999999998777766666543 3689999999999555554 5678999998643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-11 Score=129.19 Aligned_cols=277 Identities=9% Similarity=0.071 Sum_probs=186.0
Q ss_pred CCCCeEEEEEeCc----CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE----
Q 002264 354 PSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF---- 425 (945)
Q Consensus 354 p~g~~llasgs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~---- 425 (945)
|+++++.++...+ +.|.++|..+++.+.. +.--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 4666655555444 7999999999887743 1112234 799999999888775
Q ss_pred ------CCCcEEEEEccCCcccccceeec--c---ccccEEEEEEecCCCeeEEEEEeC--CCcEEEEe-CCCceEEEec
Q 002264 426 ------TKHLIQLYSYAGSNDLRQHSQID--A---HVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 426 ------~dg~i~vwd~~~~~~~~~~~~~~--~---h~~~v~~l~~s~~~~~~~l~s~s~--d~~i~vwd-~~~~~~~~~~ 491 (945)
.++.|.++|..+++.+..+. +. . .......++|+|||+ +++.+.. ++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987766432 21 0 112345789999999 5555543 68899999 7888877776
Q ss_pred CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE----ecCCCCe-EEEEEEcCCCCEEEEEeecCCCCceE
Q 002264 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFL 566 (945)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~~~~s~~~~~l~~~~~~~d~~~~i 566 (945)
... . ....|.+. ..+++.+.||.+.+.+..+++.... +.....+ ...+.+.+++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 422 1 22334333 5667778889888888844443321 1111111 123567899888877664 6789
Q ss_pred EEEeCCCCcee--eEeccc---------cCcceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeeEEEeec
Q 002264 567 VEWNESEGTIK--RTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 567 ~iwd~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 625 (945)
.+.|....... ..+... .......++++++++.+++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0001223689999988887642 35799999999999999876
Q ss_pred CCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCCcccccc
Q 002264 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRA 667 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 667 (945)
.. ....++|+|||+ .+++.. .++.|.++|..++ +.++.
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~t 408 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRS 408 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEE
Confidence 43 368999999999 888888 4899999999988 34443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-07 Score=109.42 Aligned_cols=495 Identities=10% Similarity=0.032 Sum_probs=276.5
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC--CCCEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVG 422 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~g~~la 422 (945)
..|.++...++|.. |-.|+.++-+..||..+++... +.... ... ..-....|.++.... +|.+.
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~------~~~~~----~~~--~~l~~~~i~~i~~d~~~~g~lw- 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSV------YQYNP----EDP--QSLITNDVTHITSSVQAGKGLW- 131 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEE------ECCCT----TCS--SSCSCSCEEEEEECSSTTSEEE-
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEe------ecccc----CCC--CCcccCcceEEEecCccCCCEE-
Confidence 36999999998872 4456666578999987654321 00000 000 000124689998887 66654
Q ss_pred EEECCCcEEEEEccCCccccccee--ec-cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC-------
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQ--ID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG------- 492 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~--~~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~------- 492 (945)
.++.++.+..|+..+++... ... .. -....|.++...++|. +..|+.++-+..||........+..
T Consensus 132 i~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp EEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred EEECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 45544458889987654221 100 00 1234688888888776 3446656568889943333333321
Q ss_pred -CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe-------cCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 493 -~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
....|.++... .++. |..|+.+ -+.+||..+....... ......|.++...++|...+... .+
T Consensus 208 l~~~~i~~i~~d--~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKD--TNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEEC--TTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEc--CCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 13457777653 3444 4455555 6888987654332211 12345689999888887655432 35
Q ss_pred eEEEEeCCCCceeeEec-------------cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec------
Q 002264 565 FLVEWNESEGTIKRTYA-------------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA------ 625 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------ 625 (945)
-|.++|..++....... +.....|.++...++|. |..|+.++-|..++..++........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 68889987765432211 11223578888888775 66777777889998876553332110
Q ss_pred -CCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcccc
Q 002264 626 -EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (945)
Q Consensus 626 -~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~ 704 (945)
.-....|.++...++|.+ ..|+.++.|..|+..++. ...+. .........|.++...++|.+.+.
T Consensus 358 ~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~--~~~~~-~~~~~~~~~v~~i~~d~~g~lWig---------- 423 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRV--AIYNK-ENRELLSNSVLCSLKDSEGNLWFG---------- 423 (781)
T ss_dssp SCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEE--EECC------CCCSBEEEEEECTTSCEEEE----------
T ss_pred CCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCe--EEEcc-CCCCCCCcceEEEEECCCCCEEEE----------
Confidence 111236888988888764 456666779999986542 11111 111122345667777667665542
Q ss_pred ccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee
Q 002264 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (945)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 784 (945)
+.++.+..++... ..+...... ......|.++...++|...+.. .
T Consensus 424 ----------------------------t~~~Gl~~~~~~~----~~~~~~~~~--~~~~~~v~~i~~d~~g~lwigt-~ 468 (781)
T 3v9f_A 424 ----------------------------TYLGNISYYNTRL----KKFQIIELE--KNELLDVRVFYEDKNKKIWIGT-H 468 (781)
T ss_dssp ----------------------------ETTEEEEEECSSS----CEEEECCST--TTCCCCEEEEEECTTSEEEEEE-T
T ss_pred ----------------------------eccCCEEEEcCCC----CcEEEeccC--CCCCCeEEEEEECCCCCEEEEE-C
Confidence 2223333443321 111111110 0134578888888888755543 3
Q ss_pred cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceE
Q 002264 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV 864 (945)
Q Consensus 785 dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~ 864 (945)
+.+..|+....... . +..... ... ....|.+++..++|++.+...++.|..||..+++.
T Consensus 469 -~Gl~~~~~~~~~~~------~------~~~~~~------~~~--~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 469 -AGVFVIDLASKKVI------H------HYDTSN------SQL--LENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV 527 (781)
T ss_dssp -TEEEEEESSSSSCC------E------EECTTT------SSC--SCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE
T ss_pred -CceEEEeCCCCeEE------e------cccCcc------ccc--ccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE
Confidence 45666764321110 0 000000 000 24678999999999877766555588899876554
Q ss_pred EEEecC----CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC----CCcceeEEEecCCcceeeeecCC
Q 002264 865 MTTFMS----PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG----HQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 865 ~~~~~~----h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
. .+.. ....|.++...+ +|.+.+ |+.+|.|..||..+++. ..+.. ....|.++...++|.+.+++ ..
T Consensus 528 ~-~~~~~~~l~~~~i~~i~~d~-~g~lWi-~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~ 602 (781)
T 3v9f_A 528 R-KFNQYEGFCSNTINQIYRSS-KGQMWL-ATGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAST-NT 602 (781)
T ss_dssp E-EECTTTTCSCSCEEEEEECT-TSCEEE-EETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEEC-SS
T ss_pred E-EccCCCCCCCCeeEEEEECC-CCCEEE-EECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEc-CC
Confidence 3 3321 234689999988 776554 44577658999877653 23321 22468889888898877754 44
Q ss_pred ceEEEEe
Q 002264 937 AQVTLCV 943 (945)
Q Consensus 937 g~i~vWd 943 (945)
| |..+|
T Consensus 603 G-l~~~~ 608 (781)
T 3v9f_A 603 G-ISCYI 608 (781)
T ss_dssp C-EEEEE
T ss_pred c-eEEEE
Confidence 5 44444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-09 Score=113.82 Aligned_cols=228 Identities=11% Similarity=0.097 Sum_probs=154.1
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
..-..+..|+|+++.++++...++.|..||..+++... + .....+.+++++++|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE
Confidence 34567899999777788888888999999998765421 1 13457999999999996554
Q ss_pred EECCCcEEEEEccCCcccccceeec--cccccEEEEEEecCCCeeEEEEE-eC----------CCcEEEEeCCCceEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTC-GD----------DKLIKVWELSGRKLFNF 490 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~~~l~s~-s~----------d~~i~vwd~~~~~~~~~ 490 (945)
. ++.|.+||.++++... +.... .....+.+++++|+|+ ++++. +. .+.|..++..++... +
T Consensus 71 -~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~ 144 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y 144 (297)
T ss_dssp -E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred -E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence 3 5679999998765322 11111 1234588999999998 45543 22 123444444454333 3
Q ss_pred cCCCCCEEEEEeeecCCccEE-EEEEcCCeEEEEEcc--CCCee-----EEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 491 EGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYD--TMGSR-----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.......+.++|++ +++.+ ++.+.++.|.+|+++ ++... ..+.........++++++|+..++...
T Consensus 145 ~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---- 218 (297)
T 3g4e_A 145 FDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---- 218 (297)
T ss_dssp EEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----
T ss_pred eeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----
Confidence 33444568889877 45555 555668899999974 33221 112222346788999999976666542
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEc-CCCCEEEEEEC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 605 (945)
.+.|..||..+++.+..+..+.. .+.+++|. |+++.|++++.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 67899999999999888876644 68889998 88888777664
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.1e-10 Score=121.52 Aligned_cols=238 Identities=11% Similarity=0.031 Sum_probs=158.2
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
..+..++|+|+|+ |+++...++.|++||..++.... +.... .... ++|+++++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~-------------------~~~~~-~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTT-------------------VHPGF-KGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEE-------------------EEETC-CBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEE-------------------eeccC-CCCc-eeEecCCCcEEEE
Confidence 4789999999998 78887778999999998765432 11111 2233 9999999999988
Q ss_pred ECCC--cEEEEEccCCcccccceeecc-ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe-----cCCCC
Q 002264 425 FTKH--LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-----EGHEA 495 (945)
Q Consensus 425 ~~dg--~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-----~~~~~ 495 (945)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.|| ..+. ...+ .++..
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLG 265 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCC-EEEEEECCCCSCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCC-EEEEecccccCCCC
Confidence 8766 788888876544332111112 446678999999555 344466788999999 4444 3333 22222
Q ss_pred CE--EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC---------------CeEEEEEEcCCCCEEEEEee
Q 002264 496 PV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------HWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 496 ~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~~ 558 (945)
.- ..++|+|. ++.++++...++.|+.|+.+.. ...+.... .....++++++|+.+++-.
T Consensus 266 ~~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~- 341 (409)
T 3hrp_A 266 TNPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG- 341 (409)
T ss_dssp CSSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-
T ss_pred CCccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-
Confidence 22 28898874 3466777777899999987643 22222221 3478999999999655543
Q ss_pred cCCCCceEEEEeCCCCceeeEecccc--------------CcceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (945)
.+++.|+.|++.++... ++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 --~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 --FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp --TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred --CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 02789999998777643 333320 124678999999766666667788887765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-10 Score=131.22 Aligned_cols=250 Identities=11% Similarity=0.039 Sum_probs=161.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEe----CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 343 QGSTVISMDFHPSHQTLLLVGS----SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
|...+..++|||||++++.+.+ ...+|++||+.+++.+.. .+ +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PL--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EE--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------cc--CCceeccEEEe-CC
Confidence 4457899999999997544433 335799999999875421 01 11113568999 99
Q ss_pred CEEEEEECCCc-------------EEEEEccCCccc-ccceeecc-ccccEEEEEEecCCCeeEEEEEeC---CCcEEEE
Q 002264 419 NYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (945)
Q Consensus 419 ~~las~~~dg~-------------i~vwd~~~~~~~-~~~~~~~~-h~~~v~~l~~s~~~~~~~l~s~s~---d~~i~vw 480 (945)
+.|+.++.+.. |++|++.++..- ..+..... |...+.++.|+|||+. ++++.+. ++.|.++
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF-LLISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE-EEEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE-EEEEEccCCCCcEEEEE
Confidence 99999988743 999999876432 11112233 4556789999999996 3333332 3589999
Q ss_pred e-CCCc-eEEEecCCCCCEEEEEeeecCCccEEEEEEcC---CeEEEEEccCCCe--eEEecCCCCeEEEEEEcCCCCEE
Q 002264 481 E-LSGR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 481 d-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
| .++. ....+..+....... +.+. ++.+++....+ +.|..+|+.++.. ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9 4442 455666666655554 4443 23455554443 6799999987654 233444444443 889999998
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC----CcEEEEECCCCeeE
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDNVNIL 620 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 620 (945)
+.... .++...|++||+..+. .+.+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~-~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYM-VDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEE-ETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEE-ECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 87765 2234479999987544 344433223346667778888777766544 78999999887643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-09 Score=119.13 Aligned_cols=238 Identities=9% Similarity=0.047 Sum_probs=160.8
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--cEEEEe-CC
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LS 483 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd-~~ 483 (945)
.....|+|+++|+++++...++.|++||.+++.... .... ..... ++|+++++ .++++..++ .|.+|+ ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~---~~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT---VHPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE---EEET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE---eecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 468899999999988877778899999998765432 1222 22233 99999999 677777655 788999 54
Q ss_pred CceEEEe----cCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE----ecCCCCeE--EEEEEcCCCCEE
Q 002264 484 GRKLFNF----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWC--TTMLYSADGSRL 553 (945)
Q Consensus 484 ~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~~~~s~~~~~l 553 (945)
+.....+ ......+.++++++. + ..|+.+..++.|+.||..+...... .......- ..++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~-g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDET-E-EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTT-S-SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCC-C-CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 5443343 224456778888763 3 3455577788999999887654332 22221112 389999976666
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEecccc--------------CcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN 618 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 618 (945)
+.+.. ..+.|+.|+.... ...+.+.. -.....++++++|+++++-. .++.|+.|++.++.
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 65543 4778999987643 22333221 12367899999999777776 78999999988887
Q ss_pred eEEEeecCC------------CCCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 619 ILTSTDAEG------------GLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 619 ~~~~~~~~~------------~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
......... .......++++++|.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 544332200 0124678999999888888777888888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-09 Score=112.30 Aligned_cols=229 Identities=10% Similarity=0.000 Sum_probs=153.7
Q ss_pred CCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 405 VPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 405 h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
+..--.+..|+|++. ++++...++.|..||..+++. . .+ .....+.+++++++|+ ++++. ++.|.+|| .
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~---~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q---RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E---EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E---EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 445567899999654 555666688999999988653 2 12 2456799999999998 55543 56899999 5
Q ss_pred CCceEEEecC----CCCCEEEEEeeecCCccEEEEEEcC---------CeEEEEEccCCCeeEEecCCCCeEEEEEEcCC
Q 002264 483 SGRKLFNFEG----HEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 483 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (945)
+++....... ....++.+++.+ +|+++++...+ ..-.+|.++...............+.++|+||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 5543322211 123477888765 56666554322 23456655543333333333345678999999
Q ss_pred CCEEEEEeecCCCCceEEEEeC--CCCcee--e---EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEE
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNE--SEGTIK--R---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~--~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (945)
++.++.+.. ..+.|..||+ .++... + .+.... .....++++++|+..++....+.|..||..+++.+..
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 998876653 3678999986 455432 1 222222 2567899999998777777888999999999999888
Q ss_pred eecCCCCCCccEEEEc-CCCCEEEEEECC
Q 002264 623 TDAEGGLPNLPRLRFS-KEGNLLAVTTAD 650 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~s-p~g~~l~~~~~d 650 (945)
+..+.. .+++++|. |+++.|++++..
T Consensus 236 i~~p~~--~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 236 VKLPVD--KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECSSS--BEEEEEEESGGGCEEEEEEBC
T ss_pred EECCCC--CceEEEEeCCCCCEEEEEcCC
Confidence 876643 68999998 888887776643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-09 Score=112.40 Aligned_cols=225 Identities=14% Similarity=0.054 Sum_probs=150.2
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
-..+.+|+|+++.+++++..++.|.+||..+++... + .....+.+++|+++|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 467889999877788888888999999988765321 1 123579999999999987764
Q ss_pred CCCcEEEEEccCCcccccceeec-c-ccccEEEEEEecCCCeeEEEEEeC------CCcEEEEeCCCceEEEecCCCCCE
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGHEAPV 497 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~-~-h~~~v~~l~~s~~~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~~~~v 497 (945)
.+ .|.+||.++++... +.... . ....+.+++++|+|. ++++... .+.|..++ +++. ..+.......
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSE
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCccc
Confidence 44 49999998876422 11111 1 124689999999998 5554432 24555555 5443 3333333456
Q ss_pred EEEEeeecCCccEEE-EEEcCCeEEEEEcc--CC-Ce-----eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 498 YSICPHHKENIQFIF-STAIDGKIKAWLYD--TM-GS-----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
..++|++ +++.++ +.+.++.|.+||++ ++ .. ...+.........+++.++|...++.. +.+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEEE
Confidence 7888876 556554 44557899999986 44 21 112222344678899999998766654 2578999
Q ss_pred EeCCCCceeeEeccccCcceEEEEEc-CCCCEEEEEECC
Q 002264 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGED 606 (945)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d 606 (945)
||. +++.+..+..... .+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 998 5777776665543 68889998 888877766543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-10 Score=133.90 Aligned_cols=244 Identities=11% Similarity=0.111 Sum_probs=158.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEE-----CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC---
Q 002264 404 DVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--- 475 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~-----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~--- 475 (945)
+|...+..++|||||++||.+. .+..|++||+.+|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCccc
Confidence 4666899999999999998543 235699999999875431 11 11113578999 999 566666553
Q ss_pred ----------cEEEEe-CCCc----eEEEecC-CCCCEEEEEeeecCCccEEEEEEc----CCeEEEEEccCCC-eeEEe
Q 002264 476 ----------LIKVWE-LSGR----KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-SRVDY 534 (945)
Q Consensus 476 ----------~i~vwd-~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~ 534 (945)
.|++|+ .++. .+..... |.....++.|++ ||++|+.... +..|.++|+.++. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 389999 4433 2332233 444567777766 6677654432 2489999987764 34444
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCce--eeEeccccCcceEEEEEcCCCCEEEEEEC-CC--cE
Q 002264 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--QI 609 (945)
Q Consensus 535 ~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i 609 (945)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+....+ .|+++++.|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEE
Confidence 4444444444 6778888777664322357899999988654 234544544333 78888988887764 43 68
Q ss_pred EEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC----CcEEEEECCCCc
Q 002264 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD----NGFKILANAIGL 662 (945)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d----g~i~iw~~~~~~ 662 (945)
++|++.++. ...+.... ...+..+.++++++.++....+ +.+..||+.++.
T Consensus 353 ~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 353 EQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 999987554 44444332 2246677788888877766554 789999987763
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-10 Score=121.63 Aligned_cols=271 Identities=12% Similarity=0.022 Sum_probs=172.0
Q ss_pred CcEEEEEEeCCCCeEEEEEe--CcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 345 STVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 577753 2343666766544322 111111 01224667899999999998766
Q ss_pred EEEC-----CCcEEEEEccCCcccccceeec----cccccEEEEEEecCCCeeEEEEEe---CCCcEEEEe-CCCceEEE
Q 002264 423 VAFT-----KHLIQLYSYAGSNDLRQHSQID----AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 423 s~~~-----dg~i~vwd~~~~~~~~~~~~~~----~h~~~v~~l~~s~~~~~~~l~s~s---~d~~i~vwd-~~~~~~~~ 489 (945)
+-.. ++.|.+||+.+++.++.+ .+. .+...+..+++++++.. .+++.. .++.|.+|| .+++....
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988754422 121 23345789999987653 455555 678999999 67777666
Q ss_pred ecCCCCCEE-EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 490 FEGHEAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 490 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++++|||+.|+++.. ....++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~---~~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPM---HSTSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEES---SCSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeC---CCCeEEE
Confidence 655432111 122333 456677777888876663 13678999999998888764 1335655
Q ss_pred EeCC---CCc-----eee--EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 569 WNES---EGT-----IKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ......++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 000 1112222 3456899999988888888999999998667654443322 22357899999
Q ss_pred CCCCEEEEEECCCc
Q 002264 639 KEGNLLAVTTADNG 652 (945)
Q Consensus 639 p~g~~l~~~~~dg~ 652 (945)
++|.++++.+..+.
T Consensus 300 ~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 300 SDGYLYFDCNQLHH 313 (343)
T ss_dssp TTSCEEEEECCGGG
T ss_pred CCCcEEEEeCcccc
Confidence 99887777654433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-09 Score=126.29 Aligned_cols=323 Identities=12% Similarity=0.056 Sum_probs=188.7
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCCe-----------EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
..+++++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 46777778889999999999888877654320 112233 3556766654 889999999999998
Q ss_pred eEeccc-cC---cceE-EEEEcCCCCEEEEEEC------CCcEEEEECCCCeeEEEeecCCCC-----------------
Q 002264 578 RTYAGF-RK---KSNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL----------------- 629 (945)
Q Consensus 578 ~~~~~~-~~---~~~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 629 (945)
-.+... .. ..+. ...+. +..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 877654 10 0111 11111 456666553 689999999999998877653221
Q ss_pred -------------CCccEEEEcCCCCEEEEEECCCc-------------------EEEEECCCCccccccccCCcccccc
Q 002264 630 -------------PNLPRLRFSKEGNLLAVTTADNG-------------------FKILANAIGLRSLRAVENPPFEALR 677 (945)
Q Consensus 630 -------------~~v~~v~~sp~g~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (945)
.....++++|++..++.++.++. |..+|..+++
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--------------- 294 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--------------- 294 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC---------------
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC---------------
Confidence 01135778888888887776543 3333333221
Q ss_pred CcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeec
Q 002264 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (945)
Q Consensus 678 ~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (945)
.+|........ ....
T Consensus 295 -------------------------------------------------------------~~W~~~~~~~d----~wd~ 309 (677)
T 1kb0_A 295 -------------------------------------------------------------YKWHYQETPGD----NWDY 309 (677)
T ss_dssp -------------------------------------------------------------EEEEEESSTTC----CSCC
T ss_pred -------------------------------------------------------------EEEEEecCCCc----cccc
Confidence 11211100000 0000
Q ss_pred CCCCCCccceEEEEEecCC---CeEEEeeecCeEEEEeecCCCCCCCCceeeeeccc------cccCCCccccc------
Q 002264 758 PESTDTSSKVVRLLYTNSA---VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ------HWLPSSGLLMA------ 822 (945)
Q Consensus 758 ~~~~~~~~~v~~l~~s~dg---~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------ 822 (945)
. .......+....+| ..++.++.+|.++++|... |+.+...... -+| .++.++.
T Consensus 310 ~----~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t------G~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~ 378 (677)
T 1kb0_A 310 T----STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN------GKFISAKNFVPVNWASGYD-KHGKPIGIAAARD 378 (677)
T ss_dssp C----CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT------CCEEEEEESSCCSSEEEEC-TTSCEEECGGGGC
T ss_pred c----cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC------CCEeccccccccCcccccC-CCCceeeccccCc
Confidence 0 01112223334466 5677777888888887543 3332221100 011 1222110
Q ss_pred -----ccccCCCcCCceeEEeecCCCceEEecC--------------------------------------------CCe
Q 002264 823 -----NDVAGVNLEEAVPCIALSKNDSYVMSAT--------------------------------------------GGK 853 (945)
Q Consensus 823 -----~~l~~~~~~~~i~~l~~s~dg~~la~~s--------------------------------------------d~~ 853 (945)
...++..-...-..++|+|++.++++.. .+.
T Consensus 379 ~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 458 (677)
T 1kb0_A 379 GSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR 458 (677)
T ss_dssp TTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE
T ss_pred CCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE
Confidence 0011100001113678899887776642 167
Q ss_pred EEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCC-cceeEEEecCCcceeee
Q 002264 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVS 932 (945)
Q Consensus 854 i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s 932 (945)
|..||+.+++.+.++. +..++....++. ++.++++++.||.+++||..+|+.+..+.... ....-+.|..+|+.++.
T Consensus 459 l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 459 LLAWDPVAQKAAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEETTTTEEEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEeCCCCcEEeecC-CCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9999999999988876 334455556666 66788889999999999999999999887443 23344566788875554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-10 Score=118.09 Aligned_cols=284 Identities=10% Similarity=-0.011 Sum_probs=174.4
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCeeEEEeecCCCC-----
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWDMDNVNILTSTDAEGGL----- 629 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~----- 629 (945)
.|.++|..+++.+.++..... + .+.++|+++.++++. .++.|.+||..+++.+..+...+..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 788999999999999886655 3 699999999999886 3688999999999999998764110
Q ss_pred CCccEEEEcCCCCEEEEEEC--CCcEEE--EECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccc
Q 002264 630 PNLPRLRFSKEGNLLAVTTA--DNGFKI--LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (945)
Q Consensus 630 ~~v~~v~~sp~g~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~ 705 (945)
.....++++|||++++++.. +..+.+ +|..+ ...+... .++.+.|+|+..+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~---------~~~~~~p~g~~~~------------ 178 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSA---------SCFHIHPGAAATH------------ 178 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECS---------SCCCCEEEETTEE------------
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECC---------CceEEccCCCeEE------------
Confidence 23578999999999999875 456888 88865 1222110 0122345554332
Q ss_pred cCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccce-----eecCCcceeeecCCCCCCccceEEEEEecCCCeEE
Q 002264 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE-----IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (945)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 780 (945)
++.+.|+.+.+.++.. ........ ..++- ...+. + ++++..++
T Consensus 179 ------------------------~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~v---g~~P~---~-~~~~~~~~ 226 (368)
T 1mda_H 179 ------------------------YLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNC---SSQAA---Q-ANYPGMLV 226 (368)
T ss_dssp ------------------------ECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCB---CSCCE---E-ETTTTEEE
T ss_pred ------------------------EEEcCCCCEEEEECccccccCCeEEEEee-eeeeC---CCCcc---c-cccCCEEE
Confidence 1222233333333321 00000000 00000 11222 3 66666666
Q ss_pred EeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--C-------
Q 002264 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--G------- 851 (945)
Q Consensus 781 ~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d------- 851 (945)
..+. +.+.+.|+..... . .+..|............ .......++++||++.+.++. .
T Consensus 227 ~vs~-~~V~viD~~~~~~----~-----v~~~~~~~~~~~~~~~~----~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 227 WAVA-SSILQGDIPAAGA----T-----MKAAIDGNESGRKADNF----RSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp ECBS-SCCEEEECCSSCC----E-----EECCCCSSCTHHHHTTE----EECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred EEcC-CEEEEEECCCCcc----e-----EEEEEEecccccccccc----ccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 6666 8888887532110 0 01112222111000000 111223378999998777642 2
Q ss_pred -CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCc-eEEEee-cCceEEEEecccceEEEEecCCCcceeEEEecC
Q 002264 852 -GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 925 (945)
Q Consensus 852 -~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~-~lasg~-~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 925 (945)
+.+.++|+.+++.+.++.... ....++|+| |++ ++++.. .++.|.|+|+.+++.+.++.... ....+++.+
T Consensus 293 ~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEEE-EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred CCCEEEEECCCCeEEEEEECCC-CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 356799999999988887433 589999999 676 566666 59999999999999999987553 344566554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-09 Score=115.01 Aligned_cols=238 Identities=10% Similarity=0.018 Sum_probs=157.2
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.....+.......+|+|+|++|++++..++.|..|+. +++.. .+..+...+..++++++
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--------------------~~~~~~~~~~gl~~d~d 96 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--------------------VLLDATAFTNGNAVDAQ 96 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--------------------EEEESCSCEEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--------------------EEeCCCCccceeeECCC
Confidence 3344455678899999999988888888899999987 44321 12335567899999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccc-cccEEEEEEecCCCeeEEEE----EeC-------------CCcEEE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CGD-------------DKLIKV 479 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~~l~s----~s~-------------d~~i~v 479 (945)
|+++++...++.|.+|+.+ ++.........+. ...+.++++.++|. +++| |.. .+.|..
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~ 173 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYR 173 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEE
Confidence 9977766566789999986 4422111111111 23467899999998 6665 331 246777
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC------CeEEEEEccCCCee---EEecCCCCeEEEEEEcCC
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~ 549 (945)
|| .+++..... .......++|++ +++.|+.+... +.|.+|++...... ............+++.++
T Consensus 174 ~d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~ 249 (305)
T 3dr2_A 174 LPPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRG 249 (305)
T ss_dssp ECSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTT
T ss_pred EcCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCC
Confidence 88 456544332 445567888876 55767766655 78999998754311 111112233456889999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 613 (945)
|+..++. .+.|.+|+. +++.+..+.... .+..++|+++++.|++++.++ ++.++
T Consensus 250 G~lwv~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 250 GWLWSSS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp SCEEECC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCEEEec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 9954443 234999998 567776666544 467789999999898888754 44333
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-09 Score=128.60 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=60.0
Q ss_pred CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcc-eeEEEecCCccee
Q 002264 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNIL 930 (945)
Q Consensus 852 ~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l 930 (945)
|.|..||+.+++.+.++..+. ++..-.++. .+.++++|+.||.++.||.++|+.+.+++...+. ..-+.|..||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCC-CccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 679999999999998887543 333335566 5679999999999999999999999888754332 2456778888754
Q ss_pred ee
Q 002264 931 VS 932 (945)
Q Consensus 931 ~s 932 (945)
++
T Consensus 533 v~ 534 (689)
T 1yiq_A 533 VT 534 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-10 Score=121.89 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=132.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.+..+++++.+. ++++|+.++ +++|++.+.+...... ...++......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~---------~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSD---------STPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSS---------SCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccc---------cccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 688888774 5569976543111000 00011111223566 999999 99999999
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (945)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+|| .++.... +...|++++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 45567788988887754 377788999999999 5555432 456899999988
Q ss_pred cCCccEEEEEEcCCeEEEEEccCCCe--eEEe------c---CCCCeEEEEEEcCCCCEEEEEee
Q 002264 505 KENIQFIFSTAIDGKIKAWLYDTMGS--RVDY------D---APGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
+ | ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-+.
T Consensus 173 k--G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 S--Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp S--E--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred C--c--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 4 4 67899999999999887664 4444 2 25678999999999998887553
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-09 Score=117.13 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=78.4
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc------cCcceEEEEEcCCCCEEEEEEC-----CC
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------RKKSNGVVQFDTTQNHFLAVGE-----DS 607 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~-----dg 607 (945)
.....++++++|+.+++..... ++.+.+|.+.+++. ..+... .-..+..++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~--~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY--QPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG--CCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCC--CCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 4678999999999888754211 22134444435543 223211 1125788999999875555433 57
Q ss_pred cEEEEECCCCeeEEEeecCC----CCCCccEEEEcCCCCEEEEE-E---CCCcEEEEECCCC
Q 002264 608 QIKFWDMDNVNILTSTDAEG----GLPNLPRLRFSKEGNLLAVT-T---ADNGFKILANAIG 661 (945)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~sp~g~~l~~~-~---~dg~i~iw~~~~~ 661 (945)
.|.+||+.+++.+..+..+. ....+..+++++++..++.+ . .++.|.+||+.++
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g 155 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG 155 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence 89999999999877776532 11246899999865555444 3 4788999999876
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-09 Score=111.71 Aligned_cols=235 Identities=11% Similarity=0.075 Sum_probs=153.3
Q ss_pred ccCCCccEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE
Q 002264 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw 480 (945)
+..+.......+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+|
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRS 112 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEE
Confidence 334455678899999998 5566667889999987 443 22 3445667799999999998 66666666889999
Q ss_pred eCCCceEEEecCC-----CCCEEEEEeeecCCccEEEE----EEc-------------CCeEEEEEccCCCeeEEecCCC
Q 002264 481 ELSGRKLFNFEGH-----EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 481 d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
+.+++.. .+..+ ...+.++++.+ +|.+.++ |.. .+.|..||..+++..... ..
T Consensus 113 ~~~g~~~-~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 113 DADGQAH-LLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp CTTSCEE-EEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred CCCCCEE-EEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 9556543 22211 12356677765 6677765 322 245666766555443332 33
Q ss_pred CeEEEEEEcCCCCEEEEEeecC--CCCceEEEEeCCCCcee--eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 539 HWCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~--d~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (945)
.....++|+||++.|+++.... .+.+.|+.|++..+... ..+..........++++++|+ +.+++.+ .|.+|+.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 4567899999999887765310 01268999998754411 112111122345688999998 4444444 4999998
Q ss_pred CCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
+++.+..+..+. .+.+++|+++++.|++++.++..+
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 567777776543 478999999999998888764333
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-08 Score=107.31 Aligned_cols=223 Identities=13% Similarity=0.024 Sum_probs=144.5
Q ss_pred cEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
...+++|+|++. ++++...++.|..||.++++.. .+. ....+.+++|+++|+ ++++. .+ .|.+|| .+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-LPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-CSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-CCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCc
Confidence 346789999755 5556666789999999876432 122 346799999999998 55544 34 499999 5665
Q ss_pred eEEEecCC-----CCCEEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEE
Q 002264 486 KLFNFEGH-----EAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 486 ~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 556 (945)
.. .+... ...+.++++++ +|+++++...+ +...+|.++++ ....+.........++|+||++.++.+
T Consensus 121 ~~-~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 121 LT-LHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAKG-KVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EE-EEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEETT-EEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EE-EEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeCC-cEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 43 33221 23578888866 55665554322 22344444333 332222222346789999999988766
Q ss_pred eecCCCCceEEEEeCC--CC-ce-----eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC
Q 002264 557 GTSKDGDSFLVEWNES--EG-TI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~--~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (945)
.. .++.|.+||.. ++ .. ...+.... .....++++++|+..++...++.|.+|+. +++.+..+..+..
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 43 36789999985 55 32 12222222 24677899999987777767789999998 6777777765543
Q ss_pred CCCccEEEEc-CCCCEEEEEECC
Q 002264 629 LPNLPRLRFS-KEGNLLAVTTAD 650 (945)
Q Consensus 629 ~~~v~~v~~s-p~g~~l~~~~~d 650 (945)
.+.+++|+ ++++.|++++..
T Consensus 272 --~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 --QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp --BEEEEEEESTTSCEEEEEEBC
T ss_pred --CcEEEEEecCCCCEEEEEecC
Confidence 68999998 888877666543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-08 Score=106.62 Aligned_cols=309 Identities=10% Similarity=0.056 Sum_probs=179.7
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCC---------CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 579 (945)
..+++++.++.|..+|..+++......... ..+.+.. ..++..+++++. ++.|+.+|..+++.+..
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~----~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSE----KAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcC----CCEEEEEECCCCCEEEE
Confidence 578888889999999999998887766532 2232221 123456666653 78999999999998766
Q ss_pred eccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCC---CccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP---NLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
+..... ........ +..+++++.++.|+.+|..+|+.+.......... ........ +..+++++.++.+..+
T Consensus 129 ~~~~~~-~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 129 TKVAGE-ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EECSSC-CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EeCCCc-eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 654332 11112222 4588889999999999999999888776543210 00122222 4567778889999999
Q ss_pred ECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCC
Q 002264 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (945)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (945)
|..++..... ..... +.+.. .
T Consensus 204 d~~tG~~~w~-~~~~~--------------~~~~~--------------------------------------------~ 224 (376)
T 3q7m_A 204 LMEQGQMIWQ-QRISQ--------------ATGST--------------------------------------------E 224 (376)
T ss_dssp ETTTCCEEEE-EECCC----------------------------------------------------------------
T ss_pred ECCCCcEEEE-Eeccc--------------CCCCc--------------------------------------------c
Confidence 9988733211 11000 00000 0
Q ss_pred CCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCC
Q 002264 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (945)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (945)
.-++.++ ....+ + .+..++.++.++.+..+|... |+. +|...
T Consensus 225 ~~~~~~~-------------------~~~p~----~--~~~~v~~~~~~g~l~~~d~~t------G~~-------~w~~~ 266 (376)
T 3q7m_A 225 IDRLSDV-------------------DTTPV----V--VNGVVFALAYNGNLTALDLRS------GQI-------MWKRE 266 (376)
T ss_dssp -----CC-------------------CCCCE----E--ETTEEEEECTTSCEEEEETTT------CCE-------EEEEC
T ss_pred ccccccc-------------------CCCcE----E--ECCEEEEEecCcEEEEEECCC------CcE-------Eeecc
Confidence 0000000 00000 0 123355555566666665321 111 11111
Q ss_pred CcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecC-CCCCeeEEEeecCCCceEEEeecCc
Q 002264 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDS 895 (945)
Q Consensus 817 ~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~~~~~~lasg~~dg 895 (945)
......+... ++..++...++.|..+|..+++.+..... ....+...... + ..|++++.+|
T Consensus 267 --------------~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g 328 (376)
T 3q7m_A 267 --------------LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEG 328 (376)
T ss_dssp --------------CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTS
T ss_pred --------------CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCC
Confidence 1112333332 44444444478999999999998877762 22233444443 3 3677888899
Q ss_pred eEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 896 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
.|+++|..+|+.+.........+.+.... .+..|+.++.||.|+.||
T Consensus 329 ~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 99999999999888776533444332222 245677788899999887
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-09 Score=115.34 Aligned_cols=267 Identities=7% Similarity=-0.057 Sum_probs=169.6
Q ss_pred eEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE--------
Q 002264 358 TLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-------- 425 (945)
Q Consensus 358 ~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~-------- 425 (945)
++.++...++ +|.+.|..+++.+.. +-.+. .+ .+++||||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~------------------i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGH------------------SLGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEE------------------EEECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEE------------------EeCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 3455555444 888999999887743 12222 34 799999999998886
Q ss_pred --CCCcEEEEEccCCcccccceeecc-c----cccEEEEEEecCCCeeEEEEEeC--CCcEEE--Ee-CCCceEEEecCC
Q 002264 426 --TKHLIQLYSYAGSNDLRQHSQIDA-H----VGAVNDLAFAYPNKLLCVVTCGD--DKLIKV--WE-LSGRKLFNFEGH 493 (945)
Q Consensus 426 --~dg~i~vwd~~~~~~~~~~~~~~~-h----~~~v~~l~~s~~~~~~~l~s~s~--d~~i~v--wd-~~~~~~~~~~~~ 493 (945)
.++.|.+||..+++.+..+. +.+ . ......++|+|||+ +++.+.. +..+.+ +| .+ +..+..-
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk--~lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999998776432 110 0 12356799999999 4555543 467888 88 44 4444321
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC----CCeeE-----EecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT----MGSRV-----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
+. ..+.|.+. ..+++.+.||.+.+.|+.+ ..... .+.....+. . ++++..++..+ . +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs----~-~ 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV----A-S 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB----S-S
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc----C-C
Confidence 11 12334433 4556677888888888876 22211 011112233 3 56666666655 2 6
Q ss_pred eEEEEeCCCCc--eeeEeccc------cC---cceEEEEEcCCCCEEEEEEC---------CCcEEEEECCCCeeEEEee
Q 002264 565 FLVEWNESEGT--IKRTYAGF------RK---KSNGVVQFDTTQNHFLAVGE---------DSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 565 ~i~iwd~~~~~--~~~~~~~~------~~---~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~ 624 (945)
.+.+.|..+.. .+..+... .. .....++++++++.++++.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 78888886532 22222110 00 01122689999998887643 2356699999999998887
Q ss_pred cCCCCCCccEEEEcCCCC-EEEEEE-CCCcEEEEECCCCcccccccc
Q 002264 625 AEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 625 ~~~~~~~v~~v~~sp~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 669 (945)
... ....++|+|||+ .+++.. .++.|.++|+.++ +.++.+.
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 654 468999999998 456666 5899999999988 4444443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-09 Score=116.55 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=128.9
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcc--------cccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~--------~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.++.+++++...++++|+.++ +++|+++.... .... ....+.. |+.++| |+. +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 689999999999999999986 66798764321 1111 1224666 999999 788 77777 7899999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
|| .+-........|...+.++.+.+ . .+++++.||.+.+||+..+.... ....|++++|+|+| ++.+.
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~- 179 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL- 179 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE-
T ss_pred EEchhhhccCccceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE-
Confidence 99 55445555666778888876543 2 28889999999999998776543 23479999999999 44444
Q ss_pred cCCCCceEEEEeCCCCce--eeEec---------cccCcceEEEEEcCCCCEEEEEE
Q 002264 559 SKDGDSFLVEWNESEGTI--KRTYA---------GFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
+++.+++|+...++. ..++. ++. ..+.++.|.+++.++++-+
T Consensus 180 ---~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~-~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 ---KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE-YSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ---TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT-SEEEEEEESSSSEEEEEEE
T ss_pred ---cCCcEEEEcCCCccccccceecCCcccccccCCC-eeEEEEEEecCCeEEEEEc
Confidence 389999999887775 55562 133 4688999999888877644
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.6e-06 Score=93.16 Aligned_cols=459 Identities=11% Similarity=-0.003 Sum_probs=237.3
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
..-..+..++|++.+.++..+-...+.|..+++....... .++...-.....+++.+.+..|
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~------------------~v~~~~~~~P~GlAvD~~~~~l 98 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------------------NVVVSGLLSPDGLACDWLGEKL 98 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE------------------EEECSSCSCEEEEEEETTTTEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE------------------EEEeCCCCCcCeEEEEecCCEE
Confidence 3455789999999877666665556788888876542110 1122222468899999966655
Q ss_pred EEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCCceEEEec-CCCCCEE
Q 002264 422 GVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFE-GHEAPVY 498 (945)
Q Consensus 422 as~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~-~~~~~v~ 498 (945)
..+ ...+.|.+.++++... +. .+...-.....|++.|.+.. +++|- +..+.|...+.+|.....+. ..-...+
T Consensus 99 y~~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 99 YWTDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEEETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEE
T ss_pred EEEeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCc
Confidence 554 4578899999876432 21 12233445778999998663 33433 22456666666666544443 2344578
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
.+++.+.. +.+.++-...+.|...|++.................+++..+ .++.+-. +.+.|...|..+++...
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGLR 248 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCCE
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCcccE
Confidence 89987643 355555556678888888654433322212222345666544 5555432 36678888876665333
Q ss_pred EeccccC------------------------cceEEEEE-----------cCCC--------------CEEEEEECCCcE
Q 002264 579 TYAGFRK------------------------KSNGVVQF-----------DTTQ--------------NHFLAVGEDSQI 609 (945)
Q Consensus 579 ~~~~~~~------------------------~~~~~~~~-----------~~~~--------------~~l~~~~~dg~i 609 (945)
.+..... .....+++ .|.| ..++.-+..+.|
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i 328 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL 328 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCE
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccce
Confidence 2211000 00000111 1111 112222233456
Q ss_pred EEEECCCCeeE-EEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 610 KFWDMDNVNIL-TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 610 ~iwd~~~~~~~-~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
+..++...... ..+... ....+.+++|++.+..|+.+. ..+.|+.+++..... ....... -.....+++..
T Consensus 329 ~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~~~-----~~~p~GlAvD~ 401 (619)
T 3s94_A 329 RRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVTAQ-----IAHPDGIAVDW 401 (619)
T ss_dssp EEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS-----CSCCCEEEEET
T ss_pred EEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEECC-----CCCcCceEEec
Confidence 66666544321 112221 123467889998655655554 467888888865321 1111100 01244567765
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
.+..|+ ++....+.|.+.++.. .....+ ... .....
T Consensus 402 ~~~~lY------------------------------------~tD~~~~~I~v~~~~G----~~~~~l-~~~---~l~~P 437 (619)
T 3s94_A 402 VARNLY------------------------------------WTDTGTDRIEVTRLNG----TMRKIL-ISE---DLEEP 437 (619)
T ss_dssp TTTEEE------------------------------------EEETTTTEEEEEETTS----CSCEEE-ECT---TCCSE
T ss_pred ccCcEE------------------------------------EEeCCCCcEEEEeCCC----CeEEEE-EEC---CCCCe
Confidence 444443 2222224444444432 111111 111 33567
Q ss_pred EEEEEecCCCeEEEeeec--CeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 768 VRLLYTNSAVGLLALGSN--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 768 ~~l~~s~dg~~l~~~~~d--g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
.++++.|....|..+... +.|.-.+++ | ......... .-.....+++++++..
T Consensus 438 ~~iavdp~~G~ly~tD~g~~~~I~r~~~d-------G----------------~~~~~l~~~--~l~~P~GlalD~~~~~ 492 (619)
T 3s94_A 438 RAIVLDPMVGYMYWTDWGEIPKIERAALD-------G----------------SDRVVLVNT--SLGWPNGLALDYDEGK 492 (619)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETT-------S----------------CSCEEEECS--SCSCEEEEEEETTTTE
T ss_pred eeEEEEcCCCcEEEecCCCCCEEEEEccC-------C----------------CccEEEEeC--CCCCCeeeEEcccCCE
Confidence 899999975555555432 334333221 1 100000111 2345778999987777
Q ss_pred EEecC--CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce
Q 002264 846 VMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (945)
Q Consensus 846 la~~s--d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~ 906 (945)
|..+. .++|..++++.......+...-.....|++.. +.+..+=...+.|...|..+|.
T Consensus 493 LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 493 IYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred EEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence 76665 46799999864433222222233345667664 3555555566778888877763
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-07 Score=103.70 Aligned_cols=184 Identities=10% Similarity=0.064 Sum_probs=117.6
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCC---------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH---------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (945)
.++.++.++.|..+| .+|+.+..+... ...+.+... . ++..++.++.++.|..+|..+++.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-V--SGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-E--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-E--eCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 577788889999999 789988666542 122322211 1 235788889999999999999988877665
Q ss_pred CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc----eEEEEEcCCCCEEEEEECCCcEEEE
Q 002264 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFW 612 (945)
Q Consensus 537 ~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~i~iw 612 (945)
........... +..+++++. ++.|..+|..+++.+..+....... ....... +..+++++.++.|..+
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred CCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 43322122222 345666553 7899999999999887765432210 0112222 4578888889999999
Q ss_pred ECCCCeeEEEeecCCCCC-----CccEEEEcC--CCCEEEEEECCCcEEEEECCCC
Q 002264 613 DMDNVNILTSTDAEGGLP-----NLPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 613 d~~~~~~~~~~~~~~~~~-----~v~~v~~sp--~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|..+++.+.......... .+..+...| .+..+++++.++.+..+|..++
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG 259 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG 259 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence 999999887765432100 000011111 3467777788889999988777
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.6e-09 Score=120.41 Aligned_cols=306 Identities=13% Similarity=0.085 Sum_probs=184.7
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccE-EEEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
|++++.++.|.-+|..+|+.+ |......... ...... ..+ ..++. ++..|++++.|+.|..+|.++
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~---~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLI-------WKYDPQSDRH---RAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEE-------EEECCCCCGG---GGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCCCcee-------EEEcCCCCcc---ccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence 667777899999999999876 3322110000 000000 000 11122 366788888999999999999
Q ss_pred Ccccccceeecccc---ccEEEEEEecCCCeeEEEEEe-----CCCcEEEEe-CCCceEEEecCCC--------------
Q 002264 438 SNDLRQHSQIDAHV---GAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGRKLFNFEGHE-------------- 494 (945)
Q Consensus 438 ~~~~~~~~~~~~h~---~~v~~l~~s~~~~~~~l~s~s-----~d~~i~vwd-~~~~~~~~~~~~~-------------- 494 (945)
|+.+-..... .+. ..+.+--...++. +++..+ .++.|..|| .+|+.+..+....
T Consensus 141 G~~~W~~~~~-~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 141 GQRAWSVDTR-ADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCEEEEEECC-SCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCEeeeecCc-CCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 9876432211 011 1111100111443 333322 378999999 8999887765210
Q ss_pred -----------------CCEEEEEeeecCCccEEEEEEcCCe-------------------EEEEEccCCCeeEEecCCC
Q 002264 495 -----------------APVYSICPHHKENIQFIFSTAIDGK-------------------IKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 495 -----------------~~v~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~ 538 (945)
.....+++.+ ++.+++.++.++. |..+|.++++.+..+....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYDP--ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccCCceeeecCCCCccccceeEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 0011344544 4467888887764 9999999999988775421
Q ss_pred C---------eEEEEEEcCCCC---EEEEEeecCCCCceEEEEeCCCCceeeEeccccC---------------------
Q 002264 539 H---------WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK--------------------- 585 (945)
Q Consensus 539 ~---------~i~~~~~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 585 (945)
+ .........+|+ .++.+. .++.++++|..+|+.+........
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAP----KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEEC----CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1 122222223554 455554 489999999999998743221100
Q ss_pred -----------------cceEEEEEcCCCCEEEEEEC-------------------------------------------
Q 002264 586 -----------------KSNGVVQFDTTQNHFLAVGE------------------------------------------- 605 (945)
Q Consensus 586 -----------------~~~~~~~~~~~~~~l~~~~~------------------------------------------- 605 (945)
..-..++++|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 00112678888888887632
Q ss_pred --CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceee
Q 002264 606 --DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (945)
Q Consensus 606 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v 683 (945)
+|.|+.||+.+++.+..+..+. ++..-.+...+.++++++.||.++.||.++++. +..+..... .. ...+
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~~~~-~~---~~p~ 523 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPAASG-VM---AAPV 523 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSC-CC---SCCE
T ss_pred CcceeEEEEECCCCCeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCcc-ceeeeCCCC-cc---cCce
Confidence 3779999999999988887653 234446666788999999999999999999944 333332211 11 2336
Q ss_pred eecccccceec
Q 002264 684 ALKVSASSAVS 694 (945)
Q Consensus 684 ~~s~~g~~l~~ 694 (945)
.+..+|+..++
T Consensus 524 ty~~~G~qyv~ 534 (689)
T 1yiq_A 524 TYSVDGEQYVT 534 (689)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEE
Confidence 67788876543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-05 Score=86.59 Aligned_cols=466 Identities=10% Similarity=-0.018 Sum_probs=245.2
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
.-..+..++|++.+..+..+-..++.|..+++....... ++...-.....+++.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 345789999999877767776677899988886543211 1111223567899987666554
Q ss_pred EE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCCceEEEecCCCCCEEEE
Q 002264 423 VA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 423 s~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~v~~~ 500 (945)
.+ ...+.|.+.++++... +. .+...-....+|++.|.... ++++- +..+.|...+.+|.....+...-.....+
T Consensus 96 ~tD~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHR-QV--LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL 171 (628)
T ss_dssp EEETTTTEEEEEETTSTTC-EE--EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred EEECCCCEEEEEecCCCcE-EE--EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence 44 4567899999876432 21 12233455789999996663 33333 33567777777666555544445567889
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
++.+.. +.+.++-...+.|..+|++...... +.........+++.. ..++.+-. ..+.|...|..+++....+
T Consensus 172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~~v-~~~~l~~P~glav~~--~~ly~tD~---~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNREV-IADDLPHPFGLTQYQ--DYIYWTDW---SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEE-EEECCSCEEEEEEET--TEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred EEcccc-CEEEEEECCCCEEEEEcCCCCceEE-eeccCCCceEEEEEC--CEEEEecC---CCCEEEEEECCCCCceEEE
Confidence 987643 3455555667889999987654432 222233445677654 34544432 3677888887666433332
Q ss_pred ccccCc-----------------------ceEEEEE-cCCCCE-----------------------EEEEECCCcEEEEE
Q 002264 581 AGFRKK-----------------------SNGVVQF-DTTQNH-----------------------FLAVGEDSQIKFWD 613 (945)
Q Consensus 581 ~~~~~~-----------------------~~~~~~~-~~~~~~-----------------------l~~~~~dg~i~iwd 613 (945)
...... ....+++ .|.+.+ ++.+ ....|+-..
T Consensus 245 ~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~ 323 (628)
T 4a0p_A 245 QGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS-QKSAINRMV 323 (628)
T ss_dssp ECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEE-ETTEEEEEC
T ss_pred ecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeee-ccceEEEEe
Confidence 211000 0000111 111111 1111 112233222
Q ss_pred CCCCee-EEEeecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCccccccccCCc-cccccCcceeeeeccccc
Q 002264 614 MDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPP-FEALRTPIESVALKVSAS 690 (945)
Q Consensus 614 ~~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~s~~g~ 690 (945)
+..... ...+... ....+..++|++....|+.+.. .+.|+.++..... ....+.... ..........+++...++
T Consensus 324 l~~~~~~~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~-~~~v~~~~~~~~~~~~~p~glAvD~~~~ 401 (628)
T 4a0p_A 324 IDEQQSPDIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ-GFTVVVSSVPSQNLEIQPYDLSIDIYSR 401 (628)
T ss_dssp CCTTCCCCEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--------CCCEEEEEEETTTT
T ss_pred cccccCceEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC-ceEEEEcccccccccCCcceEEeeccCC
Confidence 222110 1111111 1234678899986666665554 5678888775431 111111100 000012355677777766
Q ss_pred ceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEE
Q 002264 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (945)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 770 (945)
.|+ ++.+..+.|.+.++.. .....-+.. ......++
T Consensus 402 nLY------------------------------------~td~~~~~I~v~~~~G-----~~~~~l~~~---~l~~Pr~i 437 (628)
T 4a0p_A 402 YIY------------------------------------WTCEATNVINVTRLDG-----RSVGVVLKG---EQDRPRAV 437 (628)
T ss_dssp EEE------------------------------------EEETTTTEEEEEETTS-----CEEEEEEEC---TTCCEEEE
T ss_pred eEE------------------------------------EEcCCCCEEEEEECCC-----CeEEEEEeC---CCCceeeE
Confidence 553 2222234444444431 111111111 33567899
Q ss_pred EEecCCCeEEEeeecCe-EEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEec
Q 002264 771 LYTNSAVGLLALGSNGV-QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (945)
Q Consensus 771 ~~s~dg~~l~~~~~dg~-i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~ 849 (945)
++.|...+|..+..... -+||.... +| ......... .-...+.++++++++.|..+
T Consensus 438 avdp~~g~ly~tD~g~~~~~I~r~~~-----dG----------------~~~~~l~~~--~l~~P~gla~D~~~~~LYw~ 494 (628)
T 4a0p_A 438 VVNPEKGYMYFTNLQERSPKIERAAL-----DG----------------TEREVLFFS--GLSKPIALALDSRLGKLFWA 494 (628)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEET-----TS----------------CSCEEEECS--SCSCEEEEEEETTTTEEEEE
T ss_pred EEecCCCeEEEeecCCCCCeEEEEeC-----CC----------------CCcEEEEec--cCCCccEEEEeCCCCEEEEE
Confidence 99995544554443322 24443321 11 111100111 23456889999987777666
Q ss_pred C--CCeEEEEeccCceEEEEec-CCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEe
Q 002264 850 T--GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (945)
Q Consensus 850 s--d~~i~iwd~~~~~~~~~~~-~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l 911 (945)
. .+.|...+++... ..++. ........|++.. +.+..+=...+.|...|..+|+....+
T Consensus 495 D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 495 DSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp ETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET--TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred eCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 5 4779999986433 33433 3334567788764 455555556678888887776544333
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.5e-09 Score=110.99 Aligned_cols=291 Identities=11% Similarity=0.030 Sum_probs=177.5
Q ss_pred EEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceE
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 589 (945)
.+..++.++.|..|| .+++...........+.++...+++... +++ .+ |..+|. +++....+..... ...
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t-----~~-l~~~d~-~g~~~~~~~~~~~-~~~ 101 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGS-----DK-VYAINP-DGTEKWRFDTKKA-IVS 101 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSS-----CE-EEEECC-CGGGGGGSCC------C
T ss_pred eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-Eec-----Cc-EEEECC-CCcEEEEEECCCC-ccc
Confidence 566777888888999 7777666555444456777777777544 443 33 888886 6655444332222 222
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccccccc
Q 002264 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (945)
...+. +..+++++.++.|+.+|.. ++.......... .+.++...++|. +..++.++.|..+|.. +.. .....
T Consensus 102 ~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~-~~~~~ 173 (330)
T 3hxj_A 102 DFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE-KWRFK 173 (330)
T ss_dssp CEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEEEECTT-SCE-EEEEE
T ss_pred CceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE-eEEEe
Confidence 23333 5678888889999999998 777666654432 567777777776 5557777889999876 421 11111
Q ss_pred CCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecC
Q 002264 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS 749 (945)
Q Consensus 670 ~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 749 (945)
..
T Consensus 174 ~~------------------------------------------------------------------------------ 175 (330)
T 3hxj_A 174 TN------------------------------------------------------------------------------ 175 (330)
T ss_dssp CS------------------------------------------------------------------------------
T ss_pred cC------------------------------------------------------------------------------
Confidence 00
Q ss_pred CcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCC
Q 002264 750 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (945)
Q Consensus 750 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 829 (945)
...+.++.+.++|...+. + +.+..++ . .+... |... .
T Consensus 176 --------------~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~------~g~~~-------~~~~----------~-- 212 (330)
T 3hxj_A 176 --------------DAITSAASIGKDGTIYFG-S--DKVYAIN-P------DGTEK-------WNFY----------A-- 212 (330)
T ss_dssp --------------SCCCSCCEECTTCCEEEE-S--SSEEEEC-T------TSCEE-------EEEC----------C--
T ss_pred --------------CCceeeeEEcCCCEEEEE-e--CEEEEEC-C------CCcEE-------EEEc----------c--
Confidence 001112223334442222 2 4444443 1 11111 1110 0
Q ss_pred cCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEE
Q 002264 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (945)
Q Consensus 830 ~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~ 909 (945)
....+.+++++++|.+++...++.|..+|. +++.+..+......+.++.+.+ ++ .|.+++.+|.|..+|. +++.+.
T Consensus 213 ~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 213 GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEE
T ss_pred CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEE
Confidence 234577788888887776666788888884 5666666665544456666665 55 5667888888999995 787777
Q ss_pred EecCCCcceeEEEecCCcceeeeecCCceEEEEec
Q 002264 910 KLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVE 944 (945)
Q Consensus 910 ~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl 944 (945)
.+......+.++...++|..++ ++.+|.+++...
T Consensus 289 ~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~ 322 (330)
T 3hxj_A 289 NFETGSWIIATPVIDENGTIYF-GTRNGKFYALFN 322 (330)
T ss_dssp EEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC
T ss_pred EEEcCCccccceEEcCCCEEEE-EcCCCeEEEEec
Confidence 7765666778888878876555 888998887653
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=8.9e-09 Score=113.52 Aligned_cols=258 Identities=15% Similarity=0.103 Sum_probs=163.9
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEE-c-CCCCEEEEEE------------------CCCc
Q 002264 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-D-TTQNHFLAVG------------------EDSQ 608 (945)
Q Consensus 549 ~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~------------------~dg~ 608 (945)
||++++++.. .+..|.+.|+.+.+..+.+.-........+++ + |+++++++++ .++.
T Consensus 100 DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 100 DGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 8899888653 36789999999999888554433335677887 5 9999999985 2457
Q ss_pred EEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccc
Q 002264 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (945)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~ 688 (945)
+.+.|..+.+....+...+. -..++++|+|+++++.+.+.. .+ ..+....... .
T Consensus 177 vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se-------~~-~~i~~~~~~~-------~-------- 230 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSE-------KG-MTLPEMTAAE-------M-------- 230 (595)
T ss_dssp EEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTT-------CC-SSHHHHTCCS-------E--------
T ss_pred EEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcc-------cC-cchhhccccc-------c--------
Confidence 99999999999988876542 367889999999999987632 11 0000000000 0
Q ss_pred ccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceE
Q 002264 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (945)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 768 (945)
..+.+.+.....
T Consensus 231 -----------------------------------------------d~v~V~~~~~~~--------------------- 242 (595)
T 1fwx_A 231 -----------------------------------------------DHIVVFNIAEIE--------------------- 242 (595)
T ss_dssp -----------------------------------------------EEEEEEEHHHHH---------------------
T ss_pred -----------------------------------------------ceEEEeecccee---------------------
Confidence 111111111000
Q ss_pred EEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEe
Q 002264 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (945)
Q Consensus 769 ~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~ 848 (945)
.+.++|++... +.+.+.|..... +..+...++ ......++.+||||+++++
T Consensus 243 --~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 243 --KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp --HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEEE
T ss_pred --EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEEE
Confidence 01122332221 235555432100 111000111 2345678999999999988
Q ss_pred cC--CCeEEEEeccCce------------EEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEeccc----------
Q 002264 849 AT--GGKISLFNMMTFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---------- 904 (945)
Q Consensus 849 ~s--d~~i~iwd~~~~~------------~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~---------- 904 (945)
++ +++|.++|+.+.+ ....+. -......++|+| +|...++..-|++|.+||+.+
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 87 6789999999753 344444 234579999999 786666778899999999987
Q ss_pred ceEEEEecCCCcce-----eEEEecCCcceeeeec
Q 002264 905 DEVKSKLKGHQKRI-----TGLAFSTSLNILVSSG 934 (945)
Q Consensus 905 ~~~~~~l~~h~~~V-----~~l~~s~dg~~l~s~~ 934 (945)
.+.+..+..|-.+- .++.++|||++|+++.
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 56777777664432 2345689999999864
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-05 Score=88.68 Aligned_cols=470 Identities=8% Similarity=-0.007 Sum_probs=235.5
Q ss_pred CCCcEEEEEccCCc-ccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCce--EEEecCCCCCEEEEEe
Q 002264 426 TKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICP 502 (945)
Q Consensus 426 ~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~~~~v~~~~~ 502 (945)
....|+..++.+.. ... .+...-..+..++|++.+.. ++++-...+.|..++.+|.. ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 35668888887642 111 12223445789999997774 44555557788888855542 2333333356888998
Q ss_pred eecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc
Q 002264 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
.+. +++++++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++..... ..+..
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~-~~l~~ 167 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSR-FIIIN 167 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSC-EEEEC
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCce-EEEEe
Confidence 764 33566666678899999987655444433344456789999987766665431 145677777653332 22222
Q ss_pred ccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 583 FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
..-.....+++++++..|+.+. ..+.|..+++............ ......+++..+ ...++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 2223567899999877777765 5678999998765544333211 112367788665 34444445678999998877
Q ss_pred ccccccccCCccccccCcceee-eecccccceec-cC--CCCCcc-ccccCCCCC-CCcccCCCCCccCCC--------C
Q 002264 662 LRSLRAVENPPFEALRTPIESV-ALKVSASSAVS-SG--TPANCK-VERSSPVRP-SPIINGVDPTSRSMD--------K 727 (945)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~v-~~s~~g~~l~~-~~--~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~--------~ 727 (945)
... ..+..... .+ ..+ .+.+..+-... .+ ..+.|. +=...+... ............+++ .
T Consensus 245 ~~~-~~i~~~~~----~p-~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 318 (619)
T 3s94_A 245 EGL-REIHSDIF----SP-MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE 318 (619)
T ss_dssp CCC-EECCSCCC----CC-SEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred ccc-EEEecCCC----CC-cEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence 432 22211110 01 111 12221110000 00 000000 000000000 000000000111111 1
Q ss_pred CccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceee
Q 002264 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATA 806 (945)
Q Consensus 728 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~ 806 (945)
+++.+ ..+.|+..++... ....+.++- .....+.+++|.+.+..|..+.. .+.|+-+++....
T Consensus 319 ~Ll~~-~~~~i~~i~l~~~----~~~~~~~~~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--------- 382 (619)
T 3s94_A 319 LLLLA-RRTDLRRISLDTP----DFTDIVLQL--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--------- 382 (619)
T ss_dssp EEEEE-ESSCEEEEESSST----TCCCEECCC--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------
T ss_pred EEEEE-cccceEEEecCCC----ccceeEEec--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc---------
Confidence 11111 2234444443321 111111111 02345778999986666665543 5667666532110
Q ss_pred eeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEeccCceEEEEecCCCCCeeEEEeecCC
Q 002264 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (945)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~ 884 (945)
. ...+.. .......+|+...+..|..+. .+.|.+.+++.......+...-.....|++.|..
T Consensus 383 -------------~-~~v~~~--~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~ 446 (619)
T 3s94_A 383 -------------S-QFVVTA--QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMV 446 (619)
T ss_dssp -------------C-EEEECS--SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTT
T ss_pred -------------c-EEEEEC--CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCC
Confidence 0 000111 224567899987555555444 5779999987543322233334568999999944
Q ss_pred CceEEEeec-CceEEEEecccceEEEEecCCCcceeEEEecCCcceeeee-cCCceEEEEec
Q 002264 885 NNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS-GADAQVTLCVE 944 (945)
Q Consensus 885 ~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-~~Dg~i~vWdl 944 (945)
|.+..+-.. .+.|...++............-....+|++.+++..|..+ +..+.|...++
T Consensus 447 G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 447 GYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred CcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 544444322 3567766665433222223334567789999865555444 44456666554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-08 Score=116.53 Aligned_cols=307 Identities=12% Similarity=0.074 Sum_probs=186.6
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~ 439 (945)
|++++.++.|.-+|..+|+.+ |................+ .....+++ ++..|++++.|+.|..+|..+|+
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~~~~~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRI-------WTYDPQIDRSTGFKGCCD-VVNRGVAL--WKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEE-------EEECCCCCGGGGGGSSSC-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEECCCCcEE-------EEEcCCCCcccccccccc-CCCCCceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 666777899999999999876 322211100000000000 00011222 46788888899999999999998
Q ss_pred ccccceeecc--ccccEEEEEEecCCCeeEEEEEe------CCCcEEEEe-CCCceEEEecCCCCC--------------
Q 002264 440 DLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEAP-------------- 496 (945)
Q Consensus 440 ~~~~~~~~~~--h~~~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd-~~~~~~~~~~~~~~~-------------- 496 (945)
.+-....-.. ....+.+--...++. ++.++ .++.|+.+| .+|+.+.++......
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~---v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~ 226 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRVFKGK---VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA 226 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred EEeeecCCcCcCcCcccccCcEEECCE---EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc
Confidence 7653221100 001121111112333 34443 278999999 899998777542211
Q ss_pred ------------------EEEEEeeecCCccEEEEEEcCC-------------------eEEEEEccCCCeeEEecCCCC
Q 002264 497 ------------------VYSICPHHKENIQFIFSTAIDG-------------------KIKAWLYDTMGSRVDYDAPGH 539 (945)
Q Consensus 497 ------------------v~~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~ 539 (945)
...+++.+ ++..++.++.++ .|..+|.++++....+....+
T Consensus 227 ~~w~~~g~~~~~~~g~~~w~~~~~d~--~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~ 304 (677)
T 1kb0_A 227 RTWDPSGKWWEAGGGGTMWDSMTFDA--ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG 304 (677)
T ss_dssp TTSCGGGCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred ccccccCceeEeCCCcccccceeEcC--CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC
Confidence 12344544 446777776664 599999999998887654221
Q ss_pred ---------eEEEEEEcCCC---CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc----------c----------
Q 002264 540 ---------WCTTMLYSADG---SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK----------S---------- 587 (945)
Q Consensus 540 ---------~i~~~~~s~~~---~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~----------~---------- 587 (945)
....+....+| +.++.++ .++.++++|..+|+.+..+...... .
T Consensus 305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 380 (677)
T 1kb0_A 305 DNWDYTSTQPMILADIKIAGKPRKVILHAP----KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGS 380 (677)
T ss_dssp CCSCCCCCSCCEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTT
T ss_pred cccccccCCCcEEEecccCCcEeeEEEEEC----CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCC
Confidence 12223333467 4566655 4899999999999987665422100 0
Q ss_pred --------------eEEEEEcCCCCEEEEEECC-------------------------------------------CcEE
Q 002264 588 --------------NGVVQFDTTQNHFLAVGED-------------------------------------------SQIK 610 (945)
Q Consensus 588 --------------~~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~ 610 (945)
-..++++|++..+++...+ |.|.
T Consensus 381 ~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~ 460 (677)
T 1kb0_A 381 KPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLL 460 (677)
T ss_dssp SCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEE
T ss_pred CccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEE
Confidence 0146889988888886432 7799
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccc
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~ 690 (945)
.||+.+++.+..+.... ++....+..++..+++++.||.+++||..+++. +..+..... . ....+.+..+|+
T Consensus 461 A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~-~---~~~p~~y~~~G~ 532 (677)
T 1kb0_A 461 AWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK-LWEAPTGTG-V---VAAPSTYMVDGR 532 (677)
T ss_dssp EEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSC-C---CSCCEEEEETTE
T ss_pred EEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCce-eeeeeCCCC-c---ccCCEEEEeCCE
Confidence 99999999988886543 345556777888999999999999999999943 333332211 1 123355667887
Q ss_pred cee
Q 002264 691 SAV 693 (945)
Q Consensus 691 ~l~ 693 (945)
..+
T Consensus 533 ~~v 535 (677)
T 1kb0_A 533 QYV 535 (677)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-08 Score=104.57 Aligned_cols=239 Identities=14% Similarity=0.122 Sum_probs=151.6
Q ss_pred EEe--CCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccC-CCccEEEEEEcCCCCEEEEEECC
Q 002264 351 DFH--PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-VPISVSRVAWSPDGNYVGVAFTK 427 (945)
Q Consensus 351 ~fs--p~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~i~~s~~g~~las~~~d 427 (945)
.++ +++++++++|..++.|.|+|+.+..... +-.++.+. ..+... ....-..+..+|+| +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~~k~ie~--------~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KIIKVIEP--------EEVKKVSGYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EEEEEECH--------HHHHHHHCEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-eeeeeech--------hhcccccCCCcccceeECCCe-EEEEcCCC
Confidence 447 8999988899999999999987542110 00011000 001101 11245678889999 76666555
Q ss_pred ------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-------------------CCCcEEEEe-
Q 002264 428 ------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-------------------DDKLIKVWE- 481 (945)
Q Consensus 428 ------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-------------------~d~~i~vwd- 481 (945)
|.|.++|.++++.+.....-.+-..--+.+.|+|+++ .+++.. .+.+|.+||
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 7899999999887663321111122344688999999 777774 368999999
Q ss_pred CCCceEEEecCC--CCCEEEEEeeecCCccEEEEEE------cCCeEEEEEccCCCeeE--Ee--cC-------C-----
Q 002264 482 LSGRKLFNFEGH--EAPVYSICPHHKENIQFIFSTA------IDGKIKAWLYDTMGSRV--DY--DA-------P----- 537 (945)
Q Consensus 482 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~--~~--~~-------~----- 537 (945)
.+++.+.++... ......+.|.+++++++++.++ .+++|.+|..+.+.... .+ .. .
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 677777776642 1234556664455777777776 46688777665432111 11 00 0
Q ss_pred ----CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC---CceeeEeccccC---------c----ceEEEEEcCCC
Q 002264 538 ----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRK---------K----SNGVVQFDTTQ 597 (945)
Q Consensus 538 ----~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~---~~~~~~~~~~~~---------~----~~~~~~~~~~~ 597 (945)
......+.+++||++|+++.. +.+.|.+||+.. .+.+..+..... . ....+.++|+|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG 392 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG 392 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS
T ss_pred cccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC
Confidence 234678999999999998875 578999999863 344444433200 0 24668999999
Q ss_pred CEEEEEE
Q 002264 598 NHFLAVG 604 (945)
Q Consensus 598 ~~l~~~~ 604 (945)
++|+++.
T Consensus 393 k~LyVaN 399 (462)
T 2ece_A 393 RRVYVTN 399 (462)
T ss_dssp SEEEEEC
T ss_pred CEEEEEc
Confidence 9999887
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-08 Score=105.88 Aligned_cols=266 Identities=11% Similarity=0.040 Sum_probs=169.8
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
...+.++...++|. |..|+.+ |..+|. +++.... . ..+........+. +..|..
T Consensus 59 ~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~-------~------------~~~~~~~~~~~~~--~~~l~v 112 (330)
T 3hxj_A 59 EIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWR-------F------------DTKKAIVSDFTIF--EDILYV 112 (330)
T ss_dssp GEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGG-------S------------CC-----CCEEEE--TTEEEE
T ss_pred CCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEE-------E------------ECCCCcccCceEE--CCEEEE
Confidence 34567788888885 4555544 888885 5554321 1 1111112222333 556777
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEee
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
++.++.|..+|.+ ++... ....+...+.++...+++. +..++.++.|..+|..++.+..+......+.++.+.
T Consensus 113 ~t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp ECTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEEC
T ss_pred EecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEc
Confidence 8888999999988 65433 2333444566677777776 555777899999994488777766555556655543
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~ 583 (945)
.++. ++.++ +.+..+| .++............+.++...++|...+... ++.+..+|. +++....+...
T Consensus 186 --~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 --KDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp --TTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEECT-TSCEEEEEECS
T ss_pred --CCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEECC-CCCEeEEeeCC
Confidence 3444 44555 8888999 66666666666656677888888886555432 667888874 55555555443
Q ss_pred cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
.. ....+.+.+++ .+++++.+|.|..+|. +++.+..+.... ..+.++...++|. |..++.+|.+++.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 32 33345555444 6778888889999996 677776666543 2577888878876 55688899999887653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=0.00016 Score=83.09 Aligned_cols=486 Identities=10% Similarity=-0.006 Sum_probs=247.9
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEEcc
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYA 436 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~-~~dg~i~vwd~~ 436 (945)
+||++ ..+.|+..++.+...... +....-..+..++|++.+..|..+ ..++.|..++++
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 45554 357888899876432210 011123467899999976666555 457889999887
Q ss_pred CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEEeeecCCccEEEEE-
Q 002264 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFST- 514 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~- 514 (945)
+... .. .+.........+++.+.+.. ++++-...+.|.+.+.+|.....+. ..-.....+++.|. +|.++++-
T Consensus 68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 6432 21 12222245778999887764 4556666788999996665443332 34455788998875 33444443
Q ss_pred EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEc
Q 002264 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (945)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 594 (945)
+..+.|...+++........ ........++++++++.|+.+-. +.+.|..+|+..... ..+..... ....+++.
T Consensus 143 g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~ 216 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQY 216 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEE
Confidence 23567877877655443333 34456789999999888887754 477899999865433 33332222 34556665
Q ss_pred CCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEE-EcCCCCEEEEEECCCcEEEEECCCCccccccccCCc
Q 002264 595 TTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR-FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPP 672 (945)
Q Consensus 595 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 672 (945)
. ..++... ..+.|...|..+++....+...-. ....+. +++..+. +.+ ++..
T Consensus 217 ~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~----~~n------------~C~~------ 270 (628)
T 4a0p_A 217 Q--DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS----GWN------------ECAS------ 270 (628)
T ss_dssp T--TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC----CCC------------TTTT------
T ss_pred C--CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc----cce------------Eecc------
Confidence 4 3555544 578888888877766655543221 223332 2221110 000 0000
Q ss_pred cccccCcceeeeec-ccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCc
Q 002264 673 FEALRTPIESVALK-VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ 751 (945)
Q Consensus 673 ~~~~~~~i~~v~~s-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 751 (945)
..+....+++. |.|.+-.+ +..+.. + .........+ ...++.+. ...|+...+... ..
T Consensus 271 ---~ng~C~~~C~~~~~~~~~C~-C~~g~~-l-----------~~d~~~C~~~-~~~Ll~s~-~~~i~~i~l~~~---~~ 329 (628)
T 4a0p_A 271 ---SNGHCSHLCLAVPVGGFVCG-CPAHYS-L-----------NADNRTCSAP-TTFLLFSQ-KSAINRMVIDEQ---QS 329 (628)
T ss_dssp ---TGGGCSSEEEEETTTEEEEE-CSTTCE-E-----------CTTSSCEECC-SSEEEEEE-TTEEEEECCCTT---CC
T ss_pred ---CCCCcchhhhcCCCCCeeEE-cCCCcE-e-----------cccCCcCccc-cceeeeec-cceEEEEecccc---cC
Confidence 00001111111 10111100 000000 0 0000000001 11111111 122322222110 00
Q ss_pred ceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCc
Q 002264 752 CRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (945)
Q Consensus 752 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 830 (945)
. ...++- .....+.+++|.+.+..|..+.. .+.|+.++..... .. ..+.....+...
T Consensus 330 ~-~~~l~~--~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~-------~~------------~v~~~~~~~~~~ 387 (628)
T 4a0p_A 330 P-DIILPI--HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ-------GF------------TVVVSSVPSQNL 387 (628)
T ss_dssp C-CEECCC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CE------------EEEC--------
T ss_pred c-eEEEEe--hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC-------ce------------EEEEcccccccc
Confidence 0 011111 02345788999987776766554 5666665432110 00 000000000001
Q ss_pred CCceeEEeecCCCceEEecC--CCeEEEEeccCceEEEEe-cCCCCCeeEEEeecCCCceEEEeecCc--eEEEEecccc
Q 002264 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTF-MSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVD 905 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~~~~~~lasg~~dg--~v~vwd~~~~ 905 (945)
...+..+|+...++.|..+. .+.|.+.+++ |+...++ .........|++.|..|.+..+-.... .|...++...
T Consensus 388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~ 466 (628)
T 4a0p_A 388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT 466 (628)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC
T ss_pred cCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC
Confidence 34578899998877655443 5779999986 4444443 334456899999995555555443333 4666665533
Q ss_pred eEEEEecCCCcceeEEEecCCcceeeee-cCCceEEEEec
Q 002264 906 EVKSKLKGHQKRITGLAFSTSLNILVSS-GADAQVTLCVE 944 (945)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~-~~Dg~i~vWdl 944 (945)
.........-.....|++.+++..|..+ +..+.|...|+
T Consensus 467 ~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~ 506 (628)
T 4a0p_A 467 EREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL 506 (628)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence 2222223234456889999876655544 44566766665
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-06 Score=89.31 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=144.4
Q ss_pred ccEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~-~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
..+..++|++++..|..+. .++.|..++.+++.... .+.........+++.+++.. ++++....+.|.+++.++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4678999999776665554 56789999987654221 22222346789999997664 4555666789999995554
Q ss_pred eEEEecC-CCCCEEEEEeeecCCccEEEEEEc---CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCC
Q 002264 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (945)
Q Consensus 486 ~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d 561 (945)
....+.. .......+++++.. ..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4333322 22457888887642 34444443 468888887654332222233346789999999888877654
Q ss_pred CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC
Q 002264 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (945)
+.+.|..+|.........+.+.. ....+++. +..++.+. ..+.|..+|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 46789999987654443333221 23456654 45666655 56899999999999888886432 123578888887
Q ss_pred CC
Q 002264 641 GN 642 (945)
Q Consensus 641 g~ 642 (945)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.7e-10 Score=120.67 Aligned_cols=189 Identities=7% Similarity=-0.043 Sum_probs=111.6
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
++..+++++.||.|+.||..+|+.+-. +.. +.+.+..+..++. .+++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 578899999999999999999987653 332 4455555667776 677778999999999 78887766654321
Q ss_pred CEEEEEeeecC-CccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 496 PVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 496 ~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
... ...|.- .+..+++++.|+.+..||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 001111 23468888999999999999998887765543 2345668888888875 789999999999
Q ss_pred ceeeEeccccCcceEEEEEcCCC---CEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
+.+..+.... .....+..+. ..+++++.||.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8776654321 1122333322 5678889999999999999998887764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-07 Score=106.85 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=86.6
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCCe----------E-EEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW----------C-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
..++.++.++.|..+|..+++.+..+...... + ..+++ .+..+++++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 46777888899999999999988877553221 0 11222 2456666653 889999999999988
Q ss_pred eEeccccCc---ceE-EEEEcCCCCEEEEEEC------CCcEEEEECCCCeeEEEeecCCCC------------------
Q 002264 578 RTYAGFRKK---SNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL------------------ 629 (945)
Q Consensus 578 ~~~~~~~~~---~~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 629 (945)
-.+...... .+. ...+. +..++++.. +|.|+.+|..+|+.+..+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 776543110 111 11111 345666543 589999999999998887642110
Q ss_pred -----------CCccEEEEcCCCCEEEEEECCCc
Q 002264 630 -----------PNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 630 -----------~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
.....++++|++..++.++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124677887778877776653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.87 E-value=5e-07 Score=96.06 Aligned_cols=199 Identities=9% Similarity=-0.013 Sum_probs=132.8
Q ss_pred EEe--cCCCeeEEEEEeCCCcEEEEe-CCC----ceEEEec------C-CCCCEEEEEeeecCCccEEEEEEcC------
Q 002264 458 AFA--YPNKLLCVVTCGDDKLIKVWE-LSG----RKLFNFE------G-HEAPVYSICPHHKENIQFIFSTAID------ 517 (945)
Q Consensus 458 ~~s--~~~~~~~l~s~s~d~~i~vwd-~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~~~l~s~~~d------ 517 (945)
.++ ++++. +++++..++.|.++| .+. +....+. . ....-..+.+.| +| +++++..+
T Consensus 88 ~~~~~~~r~~-l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRF-LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCE-EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSC
T ss_pred ccCCCccCCE-EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCC
Confidence 446 77775 677888899999999 444 3444442 0 111233344434 66 66666555
Q ss_pred CeEEEEEccCCCeeEEecCCCC---eEEEEEEcCCCCEEEEEeec----------C-----CCCceEEEEeCCCCceeeE
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGTS----------K-----DGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~----------~-----d~~~~i~iwd~~~~~~~~~ 579 (945)
|.|.++|..+.+.+..+..... .-..+.|+|+++.+++.... . .....|.+||+.+++.+.+
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 7899999999888887764322 23457889999988887410 0 1267899999999988888
Q ss_pred eccc-cCcceEEEEE--cCCCCEEEEEE------CCCcEEEEECCCCeeE--EEeecCCC----------------CCCc
Q 002264 580 YAGF-RKKSNGVVQF--DTTQNHFLAVG------EDSQIKFWDMDNVNIL--TSTDAEGG----------------LPNL 632 (945)
Q Consensus 580 ~~~~-~~~~~~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~~--~~~~~~~~----------------~~~v 632 (945)
+... .......+.| +|+++++++++ .+++|.+|..+.+... +.+..... ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 7753 2223444555 99999988877 4668888777655321 11111110 1246
Q ss_pred cEEEEcCCCCEEEEEEC-CCcEEEEECCC
Q 002264 633 PRLRFSKEGNLLAVTTA-DNGFKILANAI 660 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~~-dg~i~iw~~~~ 660 (945)
..+.+|+||++|.++.. .+.|.++|+..
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 88999999999998876 67999999863
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-09 Score=117.81 Aligned_cols=257 Identities=10% Similarity=0.008 Sum_probs=136.0
Q ss_pred CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434 (945)
Q Consensus 355 ~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd 434 (945)
++. .+++|+.||.|+.||..+|+.+- ... . +.+.+..+..++..+++++.||.|+.||
T Consensus 8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W-------~~~------------~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 8 PET-LLFVSTLDGSLHAVSKRTGSIKW-------TLK------------E--DPVLQVPTHVEEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp CTT-EEEEEETTSEEEEEETTTCCEEE-------EEE------------C--CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEE-------Eec------------C--CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence 455 48889999999999999998763 211 1 2333444556787888888999999999
Q ss_pred ccCCcccccceeeccccc-cEE-EEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEE
Q 002264 435 YAGSNDLRQHSQIDAHVG-AVN-DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI 511 (945)
Q Consensus 435 ~~~~~~~~~~~~~~~h~~-~v~-~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 511 (945)
.++|+.+.. +..+.. .+. +..+. ++. .+++++.|+.++.|| .+|+.+..+..+.. ..++| ++..+
T Consensus 66 ~~tG~~~w~---~~~~~~~~~~~sp~~~-~~~--~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v 133 (369)
T 2hz6_A 66 SKNNEGLTK---LPFTIPELVQASPCRS-SDG--ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLL 133 (369)
T ss_dssp ----CCSEE---CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC----------------------------E
T ss_pred CCCCceeee---eeccCccccccCceEe-cCC--EEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEE
Confidence 998876542 222211 110 11111 234 567788899999999 88998877765532 22334 45788
Q ss_pred EEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC---CEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcce
Q 002264 512 FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG---SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (945)
Q Consensus 512 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~ 588 (945)
++++.|+.|+.||.++++....+.... .....+..+. ..+++++. ++.++.||..+|+.+..+..... .+
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~----dg~v~a~d~~tG~~~W~~~~~~p-v~ 206 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNG----DGLVVTVDSESGDVLWIQNYASP-VV 206 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEET----SCEEEEECTTTCCEEEEEECSSC-EE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECC----CCEEEEEECCCCcEEEEecCCCc-eE
Confidence 899999999999999888766544221 1223333332 44555553 88999999999998777653322 33
Q ss_pred EEEEEcCCCCEEEE--EECCCcEEEEECCCCe----eEEEeecCCCCCCccEEEEcC--CCCEEEEEECCCcEEEEECC
Q 002264 589 GVVQFDTTQNHFLA--VGEDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSK--EGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 589 ~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp--~g~~l~~~~~dg~i~iw~~~ 659 (945)
....+++++...+. ...++.++.+|..+|+ .+..+.... .+. +| .+..+++++.+|.+..++..
T Consensus 207 ~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~---~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 207 AFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPK---ETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCC---HHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred EEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccCc---ccc----ccccccceEEEecccCCEEecCcc
Confidence 33445555532210 0113445666665555 333332211 111 22 34577788888888888765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-05 Score=82.45 Aligned_cols=256 Identities=13% Similarity=0.028 Sum_probs=152.4
Q ss_pred CEEEEEECCCcEEEEEccCCcccc--cceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-cCCCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEA 495 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~ 495 (945)
.+|..+.. +.|+.+++++..... ....+......+..++|++++.. ++++...++.|..++..+.....+ .....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 478889987653211 01112222345789999997764 555666678999999555433333 22234
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
....+++.+.. +.++++....+.|.+++++.................++++|++..|+.+... ...+.|..+++...
T Consensus 80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSC-
T ss_pred CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCC-
Confidence 67888887642 3455555667899999987544333333233457899999987777665431 11467888887543
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcE
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGF 653 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i 653 (945)
....+..........+++++++..|+.+. ..+.|.+++.........+.... ....++.. +..++.+. ..+.|
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d--~~~lyva~~~~~~v 231 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTNSV 231 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTTEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC---CceEEEEe--CCEEEEEECCCCeE
Confidence 22333211122467899999887777666 56789999997655444443211 23566654 45555555 46899
Q ss_pred EEEECCCCccccccccCCccccccCcceeeeecccc
Q 002264 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (945)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g 689 (945)
..++..++. ....+..... .....+++.|++
T Consensus 232 ~~~d~~~g~-~~~~i~~g~~----~~p~gi~~~~~~ 262 (267)
T 1npe_A 232 IAMDLAISK-EMDTFHPHKQ----TRLYGITIALSQ 262 (267)
T ss_dssp EEEETTTTE-EEEEECCSSC----CCCCCEEEECSC
T ss_pred EEEeCCCCC-ceEEEccccc----cccceeeecCcc
Confidence 999998873 3333321110 013456676665
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.6e-06 Score=93.68 Aligned_cols=112 Identities=7% Similarity=-0.025 Sum_probs=72.1
Q ss_pred cEEEEEEc-CCeEEEEEc-cCCCeeEEecCCCCe-----------EEEEEEcCCCCE----EEEEeecCCCCceEEEEeC
Q 002264 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSR----LFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 509 ~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~----l~~~~~~~d~~~~i~iwd~ 571 (945)
..++.++. ++.|..+|. .+++.+..+...... ...++++|.+.. +++++. ++.|+-+|.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----dg~l~AlDa 138 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----DGNVAALNA 138 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----TSEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----CCEEEEEEC
Confidence 35666776 788888998 888888776554321 123455443433 666653 889999999
Q ss_pred CCCceeeEeccccC---cceE-EEEEcCCCCEEEEEE------CCCcEEEEECCCCeeEEEeecC
Q 002264 572 SEGTIKRTYAGFRK---KSNG-VVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 572 ~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 626 (945)
.+|+.+-....... ..+. ...+. +..+++++ .+|.|+.+|..+|+.+..+...
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 99998866543220 0111 11121 34566655 3899999999999998877643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-07 Score=100.96 Aligned_cols=229 Identities=8% Similarity=0.002 Sum_probs=148.3
Q ss_pred CCCeeEEEEEeCCCcEEEEe-CCCceEEEecC-CCCCEEEEEeeecCCccEEEEEE------------------cCCeEE
Q 002264 462 PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTA------------------IDGKIK 521 (945)
Q Consensus 462 ~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~------------------~dg~i~ 521 (945)
||++ ++++...++.|.+.| .+.++...+.- .......+++..-+++.++++++ .++.+.
T Consensus 100 DG~~-lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCE-EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 7885 455666677899999 77776664332 22347777763214667888875 345789
Q ss_pred EEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC----------------------------------CceEE
Q 002264 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG----------------------------------DSFLV 567 (945)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~----------------------------------~~~i~ 567 (945)
+.|.++.+...++...+ ....++++|+|+++++++.+.+. -+.|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999887777766544 34567899999999988853211 02367
Q ss_pred EEeCCC--Cce-eeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe------------eEEEeecCCCCCC
Q 002264 568 EWNESE--GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN------------ILTSTDAEGGLPN 631 (945)
Q Consensus 568 iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~~~~~ 631 (945)
+.|..+ ++. +..+.... ...++.++|||+++++++ .+.+|.++|+.+.+ ....+.... .
T Consensus 258 VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~---g 332 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL---G 332 (595)
T ss_dssp EEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS---C
T ss_pred EEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC---C
Confidence 777776 444 44444322 356689999999988877 78899999998653 333333221 4
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC---------ccccccccCCccccccCcceeeeecccccceeccCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG---------LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
...++|+|+|...++..-|+.|.+|++.+. .+.+..+..+....+...-..+.++|||++|+++..
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 688999999943344556899999999762 123333333322222222234567788888876544
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-06 Score=96.22 Aligned_cols=110 Identities=9% Similarity=0.061 Sum_probs=70.5
Q ss_pred cEEEEEEc-CCeEEEEEc-cCCCeeEEecCCCCe-----------EEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 509 ~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
..++.++. ++.|..+|. .+++.+..+...... ...+++ ++..+++++. ++.++.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 35666666 788889998 888888776543310 011222 3455666653 7899999999999
Q ss_pred eeeEeccccCc---ceE-EEEEcCCCCEEEEEEC------CCcEEEEECCCCeeEEEeecC
Q 002264 576 IKRTYAGFRKK---SNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAE 626 (945)
Q Consensus 576 ~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 626 (945)
.+-.+...... .+. ...+. +..+++++. +|.|+.+|..+|+.+..+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 88765532200 111 11111 346666664 799999999999998877643
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.8e-05 Score=86.12 Aligned_cols=377 Identities=11% Similarity=0.040 Sum_probs=198.1
Q ss_pred EEEEeCCCcEEEEe-CCCceEEEecCCCCCE---------EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC
Q 002264 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV---------YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (945)
Q Consensus 468 l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (945)
++.++.++.|.-+| .+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 44445434488899 8899887765432210 11122 1246888899999999999999988876543
Q ss_pred CC----eEE-EEEEcC---CCC-EEEEEeecC--CCCceEEEEeCCCCceeeEeccccC---------------------
Q 002264 538 GH----WCT-TMLYSA---DGS-RLFSCGTSK--DGDSFLVEWNESEGTIKRTYAGFRK--------------------- 585 (945)
Q Consensus 538 ~~----~i~-~~~~s~---~~~-~l~~~~~~~--d~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 585 (945)
.. .+. ...+.. +|+ .+++++... ..++.|+-+|..+|+.+-.......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 31 111 111111 233 454443110 1267899999999987765432100
Q ss_pred -------------------cceEEEEEcCCCCEEEEEEC--------------------C----CcEEEEECCCCeeEEE
Q 002264 586 -------------------KSNGVVQFDTTQNHFLAVGE--------------------D----SQIKFWDMDNVNILTS 622 (945)
Q Consensus 586 -------------------~~~~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 622 (945)
..-...+++|....++++.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00113567777788887763 2 5799999999999988
Q ss_pred eecCCCC----CCccE-EEEc---CCCC---EEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccc
Q 002264 623 TDAEGGL----PNLPR-LRFS---KEGN---LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 623 ~~~~~~~----~~v~~-v~~s---p~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++.+.. ....... .....+... .|+-
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~-~~~~~~~---~~~~~~~~~-~g~p 381 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA-FPFVDNI---TWASHIDLK-TGRP 381 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE-EESSSCC---CSEEEECTT-TCCE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc-cccccCc---ccccccccc-CCCE
Confidence 7653221 01111 2222 4674 788899999999999999843322 2111000 000111000 0110
Q ss_pred eeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEE
Q 002264 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (945)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 771 (945)
+.. ..+.+. .+.. .. .........|...+... -..++
T Consensus 382 ~~~-------------------------~~~~~~-----------~~~~--~~----~~~~~~~~~P~~~Gg~~-w~~~a 418 (582)
T 1flg_A 382 VER-------------------------EGQRPP-----------LPEP--GQ----KHGKAVEVSPPFLGGKN-WNPMA 418 (582)
T ss_dssp EEC-------------------------TTCSCC-----------CCCT--TC----SSCCCEEESSCTTCSSC-SSCCE
T ss_pred eEc-------------------------cccCCc-----------cccc--cc----cCCCceEECcCCccccC-CCCce
Confidence 000 000000 0000 00 00001112222111211 13578
Q ss_pred EecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCC
Q 002264 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (945)
Q Consensus 772 ~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd 851 (945)
++|+...+++...+-...++..+. ....|... .-..+...|++ ...+
T Consensus 419 ~dp~~g~~yv~~~~~~~~~~~~~~------------------~~~~g~~~-----------~g~~~~~~p~~----~~~~ 465 (582)
T 1flg_A 419 YSQDTGLFYVPANHWKEDYWTEEV------------------SYTKGSAY-----------LGMGFRIKRMY----DDHV 465 (582)
T ss_dssp ECTTTCCEEEEEECEEEEEEECCC------------------CCCTTSCC-----------CCEEEEEEESC----SSCS
T ss_pred ECCCCCEEEEechhcceeeecccc------------------cccCCCce-----------eccceeecCCC----CCCc
Confidence 888877777766554333332110 00011100 00111122331 1125
Q ss_pred CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcce-eEEEecCCccee
Q 002264 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI-TGLAFSTSLNIL 930 (945)
Q Consensus 852 ~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l 930 (945)
|.|..||+.+++.+.+..... ++..-.... .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.|..||+..
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 789999999999887765322 222222222 34578889999999999999999998887644322 226667788744
Q ss_pred e
Q 002264 931 V 931 (945)
Q Consensus 931 ~ 931 (945)
+
T Consensus 544 v 544 (582)
T 1flg_A 544 L 544 (582)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-06 Score=83.03 Aligned_cols=205 Identities=8% Similarity=-0.030 Sum_probs=135.8
Q ss_pred ceEEeecCCCc--EEEEEEeCCCCeEEEEEeC--cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE
Q 002264 336 TVAVSLHQGST--VISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 336 ~~~~~~~h~~~--V~~v~fsp~g~~llasgs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
.....+.|... ...++|+|+|. |.++.+. ++.|.+.|+.+++.+.... +..+ .....
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~fgeG 70 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YFGEG 70 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CCEEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cceEE
Confidence 45666677754 68999999974 5555443 5799999999998774311 1111 12234
Q ss_pred EEEcCCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 412 VAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 412 i~~s~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
+++. ++.|..+ -.++.+.++|..+.+.+.. +...... ...+++||+. ++.+..++.|.++| .+.+.+..
T Consensus 71 i~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~---i~~g~~~--g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 71 LTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN---FTHQMKD--GWGLATDGKI--LYGSDGTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp EEEE--TTEEEEEETTCSEEEEEETTTTEEEEE---EECCSSS--CCEEEECSSS--EEEECSSSEEEEECTTTCCEEEE
T ss_pred EEEe--CCEEEEEEecCCEEEEEECCCCcEEEE---EECCCCC--eEEEEECCCE--EEEECCCCeEEEEECCCCcEEEE
Confidence 5554 4455444 4578999999999877663 3211111 2446678884 44445688999999 77777776
Q ss_pred ecCCC-----CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-------------CCeEEEEEEcCCCC
Q 002264 490 FEGHE-----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGS 551 (945)
Q Consensus 490 ~~~~~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~ 551 (945)
+.-.. ..++.+.|. ++...+....++.|.+.|..+++....+... ....+.++|+|+++
T Consensus 142 I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~ 218 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK 218 (266)
T ss_dssp EECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred EEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence 65322 135677765 4555555556889999999999887776542 13568999999999
Q ss_pred EEEEEeecCCCCceEEEEeCCCC
Q 002264 552 RLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 552 ~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.+++++. ..+.+...++...
T Consensus 219 ~lfVTgk---~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 219 RIFVTGK---LWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEET---TCSEEEEEEEEEC
T ss_pred EEEEECC---CCCeEEEEEEecc
Confidence 8887764 3667777776543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-05 Score=94.21 Aligned_cols=281 Identities=14% Similarity=0.110 Sum_probs=168.6
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC-ccE-EEEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
+++++.++.|.-+|..+|+.+ |.......... ..... ..+ ..+++ .+..++.++.|+.|..+|.++
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t 136 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKEL-------WRYDPEVAKVK---ARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT 136 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEE-------EEECCCCCGGG---GGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCeEEEEECCCChhc-------eEECCCCCccc---cccccccCCccceEE--ECCEEEEEcCCCEEEEEECCC
Confidence 666777899999999999876 32221100000 00000 000 11222 356788888899999999999
Q ss_pred Ccccccceeecc-ccccEEE-EEEecCCCeeEEEEEe-----CCCcEEEEe-CCCceEEEecCCC---C-----------
Q 002264 438 SNDLRQHSQIDA-HVGAVND-LAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGRKLFNFEGHE---A----------- 495 (945)
Q Consensus 438 ~~~~~~~~~~~~-h~~~v~~-l~~s~~~~~~~l~s~s-----~d~~i~vwd-~~~~~~~~~~~~~---~----------- 495 (945)
|+.+-....... ....+.+ ... .++. +++..+ .++.|..+| .+|+.+.++.... .
T Consensus 137 G~~~W~~~~~~~~~~~~~~~~P~v-~~~~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 213 (668)
T 1kv9_A 137 GKAIWSQQTTDPAKPYSITGAPRV-VKGK--VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREA 213 (668)
T ss_dssp CCEEEEEECSCTTSSCBCCSCCEE-ETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred CCEeeeeccCCCCCcceecCCCEE-ECCE--EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccc
Confidence 987643221100 0011111 111 1343 333222 258999999 8999987775311 0
Q ss_pred -----------------CEEEEEeeecCCccEEEEEEcCC-------------------eEEEEEccCCCeeEEecCCC-
Q 002264 496 -----------------PVYSICPHHKENIQFIFSTAIDG-------------------KIKAWLYDTMGSRVDYDAPG- 538 (945)
Q Consensus 496 -----------------~v~~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~- 538 (945)
....+++.+ +...++.++.++ .|..+|.++++.+..+....
T Consensus 214 ~~~~~g~~~w~~~~gg~~w~~~a~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~ 291 (668)
T 1kv9_A 214 AKTWQGDQYWKLGGGGTVWDSMAYDP--ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPG 291 (668)
T ss_dssp HTTCCSSCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred cccCCccceeeeCCCCccccceEEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCC
Confidence 011234443 345777777766 39999999999988776531
Q ss_pred --------CeEEEEEEcCCCC---EEEEEeecCCCCceEEEEeCCCCceeeEeccccC-----------cc---------
Q 002264 539 --------HWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----------KS--------- 587 (945)
Q Consensus 539 --------~~i~~~~~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----------~~--------- 587 (945)
.+.....+..+|+ .++.++ .++.++++|..+|+.+........ ..
T Consensus 292 ~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 367 (668)
T 1kv9_A 292 DSWDFTATQQITLAELNIDGKPRKVLMQAP----KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (668)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred ccccccCCCCcEEEEeccCCcEEEEEEEEC----CCCEEEEEECCCCCEeccccccccccccccccccCCcccccccccc
Confidence 2222223334665 455554 489999999999998743321110 00
Q ss_pred ---------------eEEEEEcCCCCEEEEEE------------------------------------CCCcEEEEECCC
Q 002264 588 ---------------NGVVQFDTTQNHFLAVG------------------------------------EDSQIKFWDMDN 616 (945)
Q Consensus 588 ---------------~~~~~~~~~~~~l~~~~------------------------------------~dg~i~iwd~~~ 616 (945)
-..++++|+...+++.. .+|.|+.||+.+
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 01257788777766521 237899999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccc
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~ 664 (945)
++.+....... +.....+...+.++++++.|+.++.||..+++..
T Consensus 448 G~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 448 QKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp TEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 99988776543 2344445557889999999999999999999443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-05 Score=76.88 Aligned_cols=195 Identities=10% Similarity=-0.008 Sum_probs=135.5
Q ss_pred cEEEEEEecCCCeeEEEEEeC--CCcEEEEe-CCCceEEEecCCC-CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 453 AVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~--d~~i~vwd-~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
....++|++++. ++++.+. ++.|.+.| .+++.+..+.-.. .....+++. + +.+.++.-.++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~--Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g-~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAENDT--LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--N-EKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECSTTE--EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--T-TEEEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeCCCe--EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--C-CEEEEEEecCCEEEEEECCCC
Confidence 367899999864 5555543 67999999 8899887765222 223345543 2 355556667899999999988
Q ss_pred CeeEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEE
Q 002264 529 GSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 529 ~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 603 (945)
+....+... ... ..+++||+.++++. +++.|.++|..+.+.+..+..... ...+.+.+. ++ .+++.
T Consensus 97 ~v~~~i~~g~~~g---~glt~Dg~~l~vs~----gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn 167 (266)
T 2iwa_A 97 SNIKNFTHQMKDG---WGLATDGKILYGSD----GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWAN 167 (266)
T ss_dssp EEEEEEECCSSSC---CEEEECSSSEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEE
T ss_pred cEEEEEECCCCCe---EEEEECCCEEEEEC----CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEe
Confidence 887777544 222 33556888887653 378999999999988887764321 125567777 56 45554
Q ss_pred E-CCCcEEEEECCCCeeEEEeecCC-----------CCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCC
Q 002264 604 G-EDSQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (945)
Q Consensus 604 ~-~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~ 661 (945)
. .++.|.+.|..+++.+..+...+ .....+.++|+|+++.+++++ ..+.+...++...
T Consensus 168 ~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 168 IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 4 67899999999999999887531 112458999999987665554 5778888887543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-05 Score=94.78 Aligned_cols=247 Identities=9% Similarity=0.031 Sum_probs=131.7
Q ss_pred cEEEEEEe-CCCCeEEEEEeCcC----cEEEEEcCCC-CcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 346 TVISMDFH-PSHQTLLLVGSSNG----EITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 346 ~V~~v~fs-p~g~~llasgs~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
.+...+|| |||++++++.+.+| +|+++|+.++ +.+.. .+. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence 68899999 99997555544443 5999999988 63311 011 1234689999999
Q ss_pred EEEEEECC-----CcEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEe-CCCcEEEEe-CCC--ce-EE
Q 002264 420 YVGVAFTK-----HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSG--RK-LF 488 (945)
Q Consensus 420 ~las~~~d-----g~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd-~~~--~~-~~ 488 (945)
.|+....+ ..|.++++.++..... ..+. ........+.|+|||+.+.+.+.+ ....|.++| .++ .. +.
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887765 2588888877642211 1222 223456788999999953333322 234577888 443 22 13
Q ss_pred Eec-CCCCCEEEEEeeecCCccEEEEEEcC----CeEEEEEccCCCeeEE-ecCCCC--eEEEEEEcCCCCEEEEEeecC
Q 002264 489 NFE-GHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVD-YDAPGH--WCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 489 ~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+. .......++.|+. ++.+++....+ ..|..+++.+...... +..+.. .+..+.+ +++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 443 3344555555432 22344444433 2566666654222112 222222 4455555 4556655543 2
Q ss_pred CCCceEEEEeC-------CCCceeeEeccccCcceEEEEE----cCCCC-EEEEEECC---CcEEEEECCCCee
Q 002264 561 DGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQF----DTTQN-HFLAVGED---SQIKFWDMDNVNI 619 (945)
Q Consensus 561 d~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~l~~~~~d---g~i~iwd~~~~~~ 619 (945)
++...|.++|+ .+++....+.......+..+.+ ++++. .+++.+.. +.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34456778886 3443133332211111222222 34554 44443322 4678888877764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.9e-06 Score=97.45 Aligned_cols=277 Identities=9% Similarity=0.029 Sum_probs=152.5
Q ss_pred EEEEeC-CCCeEEEEEeCcC-----------cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 349 SMDFHP-SHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 349 ~v~fsp-~g~~llasgs~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
++++.| +|+ +++.|+.+. .+.+||..+++..... .....+.....++++..
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 567777 776 788876542 5788998876643210 01112333344578889
Q ss_pred CCCEEEEEEC-CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEe-CC-----CcEEEEe-CCCceEE
Q 002264 417 DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DD-----KLIKVWE-LSGRKLF 488 (945)
Q Consensus 417 ~g~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d-----~~i~vwd-~~~~~~~ 488 (945)
+|++++.|+. +..+.+||..+++-... ..+..... -.+++..++|+ +++.|+ .+ ..+.+|| .+++- .
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R~-~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W-~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARG-YQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW-T 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCS-SCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE-E
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCCCcccc-ccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcc-e
Confidence 9999999984 45799999887643221 12221111 23455667888 777787 44 5789999 55443 2
Q ss_pred EecCCC-CCE----EEEEeeecCCccEEEEEEcC---------CeEEEEEccCCCeeEEecCC---------CCeEEEEE
Q 002264 489 NFEGHE-APV----YSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAP---------GHWCTTML 545 (945)
Q Consensus 489 ~~~~~~-~~v----~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~---------~~~i~~~~ 545 (945)
.+.... .+. ....+ ..++..++.|+.+ ..+..||..+.......... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 221100 000 00011 1133445555444 35677887765533221111 11123444
Q ss_pred EcC-CCCEEEEEeecCCC----Cc---eEEEEeCCCCceeeEe--ccccCcceEEEEEcCCCCEEEEEECC---------
Q 002264 546 YSA-DGSRLFSCGTSKDG----DS---FLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGED--------- 606 (945)
Q Consensus 546 ~s~-~~~~l~~~~~~~d~----~~---~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 606 (945)
+.. +++.+++++.+... .. .+.+||..+....... ...........+..++++.+++||.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 433 66666776642100 11 6788898877655443 22222123445667899999998854
Q ss_pred --CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC
Q 002264 607 --SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 607 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
..+.+||..+.+....-..........+..+.|+|++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988764432211111111234556789999999985
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-05 Score=79.61 Aligned_cols=183 Identities=15% Similarity=0.073 Sum_probs=127.6
Q ss_pred cEEEEEEecCCCeeEEEEEeCCC--cEEEEe-CCCceEEEecCCCCC-EEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFNFEGHEAP-VYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd-~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
....+.|+ ++. ++.+.+.+| .|+++| .+++.+..+.-.... --.+++ .+ +++.+..-.++.+.+||..+.
T Consensus 44 ftqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 44 FTEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTC
T ss_pred ccceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccC
Confidence 35789998 554 666776665 899999 899988877643322 123443 32 245555557899999999999
Q ss_pred CeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEEE
Q 002264 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~ 604 (945)
+...++...... ..+++|++.|+.+. +.+.|.++|..+.+.+..+..... ..++.+.+. +|. +++..
T Consensus 118 ~~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~ 188 (262)
T 3nol_A 118 RQVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANV 188 (262)
T ss_dssp CEEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cEEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEE
Confidence 988887765432 23446777777653 377899999999998887765321 124456665 564 55554
Q ss_pred -CCCcEEEEECCCCeeEEEeecCCC----------CCCccEEEEcCCCCEEEEEECC
Q 002264 605 -EDSQIKFWDMDNVNILTSTDAEGG----------LPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 605 -~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.++.|.+.|..+++.+..+...+- ..-.+.++|+|+++.|++.+..
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 688999999999999998876421 1245889999998888877753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.49 E-value=5.5e-05 Score=79.12 Aligned_cols=227 Identities=15% Similarity=0.094 Sum_probs=137.1
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC-CC-cEEEEe-CC
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK-LIKVWE-LS 483 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-d~-~i~vwd-~~ 483 (945)
.....++|+++|+++++-..++.|..||.+++ ... .+ .....+..+++.++|+ ++++... ++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~---~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI---HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE---EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE---EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45778999999997777667889999987753 221 11 1234688999999998 5554433 33 466777 66
Q ss_pred CceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-e-------c--CCCCeEEEEEEcCCCCE
Q 002264 484 GRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-Y-------D--APGHWCTTMLYSADGSR 552 (945)
Q Consensus 484 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~~~~~ 552 (945)
++...... ........++..+ ++..+++...++.|..+|...+..... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 65432221 1122234444322 334444444688888888765321111 0 0 111234455 788888
Q ss_pred EEEEeecCCCCceEEEEeCCC-Cce--eeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCC
Q 002264 553 LFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (945)
|+++.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 477899999864 332 1122111 134558899999877666678899999975 6553322222222
Q ss_pred CCccEEEEc---CCCCEEEEEECC
Q 002264 630 PNLPRLRFS---KEGNLLAVTTAD 650 (945)
Q Consensus 630 ~~v~~v~~s---p~g~~l~~~~~d 650 (945)
....+++|. |+++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357899998 888888777654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.48 E-value=0.0024 Score=78.50 Aligned_cols=226 Identities=13% Similarity=0.087 Sum_probs=124.1
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCC------CeeEEEEEeC-CCcEEE
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN------KLLCVVTCGD-DKLIKV 479 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~------~~~~l~s~s~-d~~i~v 479 (945)
..|.+.+.+ +.+++.++ .+.+.+++++.++ +...... .-...|.|+++.|.+ . +++.|.. |+++++
T Consensus 514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~-L~~~~~~-~l~~evscl~i~~~~~~~~~s~--~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQE-LRQISHT-EMEHEVACLDITPLGDSNGLSP--LCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTE-EEEEEEE-ECSSCEEEEECCCCSSSTTCCS--EEEEEETTTTEEEE
T ss_pred CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCc-eeeeccc-CCCCceEEEEeecCCCCccccc--EEEEEECCCCEEEE
Confidence 456666655 34666665 6788888887653 2222121 235579999998642 4 7888886 999999
Q ss_pred Ee-CCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC--CCeeE--EecCCCCeEEEEEEcCCCC-E
Q 002264 480 WE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT--MGSRV--DYDAPGHWCTTMLYSADGS-R 552 (945)
Q Consensus 480 wd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~--~~~~~~~~i~~~~~s~~~~-~ 552 (945)
++ ..-+.+.... +......++++...+...+|..|-.||.+.-+.++. +.... .......++.-..+...|. .
T Consensus 587 ~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~ 666 (1158)
T 3ei3_A 587 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTN 666 (1158)
T ss_dssp EETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEE
T ss_pred EECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCcee
Confidence 99 5444443222 112345566554433456889999999987666553 22221 1122223444333433343 3
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCC--CCEEEEEECCCcEEEEECCCCe--eEEEeecCCC
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGG 628 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 628 (945)
+++++ +....++... ++....-... ........|+.. .+-++..+ ++.++|..+.+.. .+..+....
T Consensus 667 V~a~s-----~rp~liy~~~-~~l~~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~- 737 (1158)
T 3ei3_A 667 VFACS-----DRPTVIYSSN-HKLVFSNVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYE- 737 (1158)
T ss_dssp EEEES-----SSCEEEEESS-SSEEEEEBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSS-
T ss_pred EEEEC-----CCCEEEEEcC-CceEEeccCh-HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCC-
Confidence 44443 3344444433 3322211111 112234456432 23455444 4569998876433 344444432
Q ss_pred CCCccEEEEcCCCCEEEEEECC
Q 002264 629 LPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 629 ~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+..++++|+.+.++++..+
T Consensus 738 --Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 738 --SPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp --EEEEEEEEGGGTEEEEEEEE
T ss_pred --CceEEEEcCCCCEEEEEEEe
Confidence 67899999988887776644
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-05 Score=81.72 Aligned_cols=241 Identities=12% Similarity=0.066 Sum_probs=143.6
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceee-----------------ccccccEEEEEEec-CCCeeEEE
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-----------------DAHVGAVNDLAFAY-PNKLLCVV 469 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~h~~~v~~l~~s~-~~~~~~l~ 469 (945)
...+++|+++|+++.++..++.|..|+..++.. ..+... ......+..+++.+ ++. |+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---LY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---EE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---EE
Confidence 456788999999788888899999998876532 211000 01123578999998 554 34
Q ss_pred EEeCCCcEEEEeCCCceEEEecCC-----CCCEEEEEeeecCCccEEEEEEc-----------------CCeEEEEEccC
Q 002264 470 TCGDDKLIKVWELSGRKLFNFEGH-----EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKAWLYDT 527 (945)
Q Consensus 470 s~s~d~~i~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~ 527 (945)
.+...+.+..+|..+..+..+... ......+++.+. +|.+.++... ++.|..||..+
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 444445588888443333333211 124677777541 4455555322 36788888765
Q ss_pred CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc--eeeEeccccCcceEEEEEcCCCCEEEEEEC
Q 002264 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
+....... .......++++++++.|+++.. ..+.|..|++.... ....+... .. ...++++++|+..++...
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEEEE
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEecC
Confidence 54332211 1123457899999997776643 26789999987531 11222211 12 567899999987666544
Q ss_pred ----------CCcEEEEECCCCeeEEEeecCCC--CCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 606 ----------DSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 606 ----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.+.|..+|. .++.+..+..... ...+..+++ .++++.++....+.|..+++...
T Consensus 249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 467888887 4777776665432 235667776 35555555556778999887543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.1e-05 Score=87.19 Aligned_cols=307 Identities=11% Similarity=0.048 Sum_probs=173.3
Q ss_pred EEEEeC-cCcEEEEEc-CCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCE----EEEEECCCcEEEE
Q 002264 360 LLVGSS-NGEITLWEL-AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY----VGVAFTKHLIQLY 433 (945)
Q Consensus 360 lasgs~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~----las~~~dg~i~vw 433 (945)
|++++. ++.|.-+|. .+|+.+ |................+ .....++++|.+.. |+.++.|+.+.-+
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~l-------W~~~~~~~~~~~~~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg~l~Al 136 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTIL-------WQDKPKQNPAARAVACCD-LVNRGLAYWPGDGKTPALILKTQLDGNVAAL 136 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEE-------EEECCCCCGGGGGGCSSC-SCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCCcEE-------EEECCCCCcccccccccc-ccccceEEEecCCcceeEEEEEcCCCEEEEE
Confidence 556666 788999998 888865 322211100000000000 00112455444444 7888889999999
Q ss_pred EccCCcccccceeecccc--ccEEE-EEEecCCCeeEEEEEe------CCCcEEEEe-CCCceEEEecCCCCC-------
Q 002264 434 SYAGSNDLRQHSQIDAHV--GAVND-LAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEAP------- 496 (945)
Q Consensus 434 d~~~~~~~~~~~~~~~h~--~~v~~-l~~s~~~~~~~l~s~s------~d~~i~vwd-~~~~~~~~~~~~~~~------- 496 (945)
|.++|+.+-... +..+. ..+.+ ... .++. ++.++ .++.|+.+| .+|+.+.++......
T Consensus 137 Da~TG~~~W~~~-~~~~~~~~~~~ssP~v-~~g~---V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p 211 (599)
T 1w6s_A 137 NAETGETVWKVE-NSDIKVGSTLTIAPYV-VKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLAS 211 (599)
T ss_dssp ETTTCCEEEEEE-CCCGGGTCBCCSCCEE-ETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred ECCCCCEEEeec-CCCCCccceeecCCEE-ECCE---EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 999998654321 11111 01111 111 2443 34443 489999999 899988776532211
Q ss_pred ------------------------------E-EEEEeeecCCccEEEEEEcC----------------CeEEEEEccCCC
Q 002264 497 ------------------------------V-YSICPHHKENIQFIFSTAID----------------GKIKAWLYDTMG 529 (945)
Q Consensus 497 ------------------------------v-~~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~ 529 (945)
+ ...++.+ ...+++.++.+ +.|..+|.++++
T Consensus 212 ~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~--~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP--GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccCCCcceecCCCccccceeEeC--CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 0 0122222 33566666654 379999999999
Q ss_pred eeEEecCCCC---------eEEEEEEc-CCCC---EEEEEeecCCCCceEEEEeCCCCceeeEecccc------------
Q 002264 530 SRVDYDAPGH---------WCTTMLYS-ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------ 584 (945)
Q Consensus 530 ~~~~~~~~~~---------~i~~~~~s-~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~------------ 584 (945)
.+..+....+ ...-+... .+|+ .++.++ .++.++++|..+|+.+.......
T Consensus 290 ~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~ 365 (599)
T 1w6s_A 290 AKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD----RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKT 365 (599)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC----TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTT
T ss_pred eeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEEC----CCcEEEEEECCCCCEeecccccCCcccccccccCC
Confidence 8887665432 11112222 4673 444444 48899999999999876554211
Q ss_pred Ccc--------------------------eEEEEEcCCCCEEEEEE----------------------------------
Q 002264 585 KKS--------------------------NGVVQFDTTQNHFLAVG---------------------------------- 604 (945)
Q Consensus 585 ~~~--------------------------~~~~~~~~~~~~l~~~~---------------------------------- 604 (945)
... -..++++|+...+++..
T Consensus 366 g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~ 445 (599)
T 1w6s_A 366 GQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGD 445 (599)
T ss_dssp CCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSB
T ss_pred CceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCC
Confidence 000 12356777666665531
Q ss_pred -----CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCc
Q 002264 605 -----EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (945)
Q Consensus 605 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (945)
..|.|..||+.+++.+....... +...-.....+..++.++.|+.++.||.++++.+- .++... ...
T Consensus 446 ~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW-~~~l~~-g~~--- 517 (599)
T 1w6s_A 446 RQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW-KFKIPS-GAI--- 517 (599)
T ss_dssp TTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE-EEECSS-CCC---
T ss_pred cccCCCcCeEEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCCEEE-EeeCCC-CcE---
Confidence 34789999999999887775432 22221223356788889999999999999995433 332211 111
Q ss_pred ceeeeeccccccee
Q 002264 680 IESVALKVSASSAV 693 (945)
Q Consensus 680 i~~v~~s~~g~~l~ 693 (945)
...+.+..+|+..+
T Consensus 518 ~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 518 GYPMTYTHKGTQYV 531 (599)
T ss_dssp SCCEEEEETTEEEE
T ss_pred eccEEEEeCCEEEE
Confidence 12345567777543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-05 Score=80.56 Aligned_cols=254 Identities=9% Similarity=0.014 Sum_probs=140.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcc--ccc----ccccCCCccEEEEEEcC-CC
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP--FQA----SIFKDVPISVSRVAWSP-DG 418 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~h~~~V~~i~~s~-~g 418 (945)
...+++|+++|+ ++.++..++.|..|+..+++... |........ ... .........+..+++.+ +|
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 567788999998 47778888999999877654321 100000000 000 00000113578999998 55
Q ss_pred CEEEEEECCCcEEEEEccCCcccccce-eecc-ccccEEEEEEec-CCCeeEEEEEeC-----------------CCcEE
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHS-QIDA-HVGAVNDLAFAY-PNKLLCVVTCGD-----------------DKLIK 478 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~-~~~~-h~~~v~~l~~s~-~~~~~~l~s~s~-----------------d~~i~ 478 (945)
+ |..+...+.|..+|..++.. +.+. ...+ .......+++.+ +|. +.++... ++.|.
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred c-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEE
Confidence 5 44454555588888776532 2111 1111 123478899999 887 5555432 36788
Q ss_pred EEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEE-EcCCeEEEEEccCCC--eeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.|| .+++. ..+...-.....+++++ +++.|+.+ +..+.|..|++.... ....+..... ...+++.++|+..+
T Consensus 169 ~~d~~~~~~-~~~~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 169 KYDPSTKET-TLLLKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEETTTTEE-EEEEEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEE
T ss_pred EEeCCCCEE-EEeccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEE
Confidence 888 44543 22222223345678765 55655544 566899999987521 1111111222 67899999998666
Q ss_pred EEeecC------CCCceEEEEeCCCCceeeEeccccC---cceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 555 SCGTSK------DGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (945)
Q Consensus 555 ~~~~~~------d~~~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (945)
+..... ...+.|..+|. .++.+..+..... ..+..+++. ++..+++....+.|..+++..
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 553200 00356888887 4777666654321 235555553 444444444677788888653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.43 E-value=0.0065 Score=74.64 Aligned_cols=291 Identities=9% Similarity=0.066 Sum_probs=159.6
Q ss_pred CCCcEEEEEEeCCC-----CeEEEEEeC-cCcEEEEEcCCCCcccccccccccccccCcccccccccC--CCccEEEEEE
Q 002264 343 QGSTVISMDFHPSH-----QTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD--VPISVSRVAW 414 (945)
Q Consensus 343 h~~~V~~v~fsp~g-----~~llasgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~i~~ 414 (945)
-..+|.|+++.|.+ ..++|+|.. |++|+|+++.+.+.+... .+.+ -...|.-+.+
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~-----------------~L~~~~~p~si~l~~~ 614 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE-----------------MLGGEIIPRSILMTTF 614 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE-----------------ECCSSCCEEEEEEEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE-----------------ECCCCCCCcEEEEEEe
Confidence 45689999998743 136888986 999999999865544211 1111 1122333333
Q ss_pred cCCCCEEEEEECCCcEEEEEcc--CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 492 (945)
....+|..|-.||.+.-+.++ +|+.......+-| ..++.=..+...|.. .++.+| +....++...++....-.
T Consensus 615 -~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~-~V~a~s-~rp~liy~~~~~l~~s~l- 689 (1158)
T 3ei3_A 615 -ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTT-NVFACS-DRPTVIYSSNHKLVFSNV- 689 (1158)
T ss_dssp -TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCE-EEEEES-SSCEEEEESSSSEEEEEB-
T ss_pred -CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCce-eEEEEC-CCCEEEEEcCCceEEecc-
Confidence 234688899999988666654 4433221111222 345555555555553 334444 444444553444332211
Q ss_pred CCCCEEEEE-eeecCCccEEEEEEcCCeEEEEEccCCCeeE--EecCCCCeEEEEEEcCCCCEEEEEeecC-----C---
Q 002264 493 HEAPVYSIC-PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSK-----D--- 561 (945)
Q Consensus 493 ~~~~v~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~-----d--- 561 (945)
.-..+.+++ |+...-..-++.. .++.++|..++..+... .+.. +..+..++++|+.+.++.+.... +
T Consensus 690 ~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~ 767 (1158)
T 3ei3_A 690 NLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 767 (1158)
T ss_dssp SSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSE
T ss_pred ChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEecccccccccc
Confidence 122333333 3221111234433 35568888776543322 2222 34678888888877665544211 0
Q ss_pred -------------------------------------CCceEEEEeCCCCceeeEeccccCcceEEEE---EcCC-CCEE
Q 002264 562 -------------------------------------GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ---FDTT-QNHF 600 (945)
Q Consensus 562 -------------------------------------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~l 600 (945)
....|++.|..+.+.+..+.-.....+.+++ |..+ ..++
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~l 847 (1158)
T 3ei3_A 768 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYF 847 (1158)
T ss_dssp EESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEE
T ss_pred chhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEE
Confidence 0135788888888877777655554555554 3322 4688
Q ss_pred EEEE----------CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 601 LAVG----------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 601 ~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++|+ ..|.|++|++..++....... .-.++|++++-- +|+ |++|- ...|++|++...
T Consensus 848 vVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 848 IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTE 914 (1158)
T ss_dssp EEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTT
T ss_pred EEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCC
Confidence 8876 357899999875543332222 123367776643 454 44443 468999999754
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00015 Score=75.83 Aligned_cols=237 Identities=8% Similarity=0.007 Sum_probs=138.5
Q ss_pred cceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
.+....+.-......++|+|+|+ ++++...++.|..||.... ... . + .....+..+++
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~--------------~-~~~~~p~gia~ 79 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----H--------------A-TVEGKVSGLAF 79 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----E--------------E-ECSSEEEEEEE
T ss_pred ceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----E--------------E-eCCCCceeEEE
Confidence 44455555446789999999998 6777667889999987643 211 1 1 11246889999
Q ss_pred cCCCCEEEEEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc-eEEEe
Q 002264 415 SPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNF 490 (945)
Q Consensus 415 s~~g~~las~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~-~~~~~ 490 (945)
+++|+++++..... .|..++..+++... +..+. .......++..+++. .+++...++.|.++| ..++ .+...
T Consensus 80 ~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~~~ 155 (306)
T 2p4o_A 80 TSNGDLVATGWNADSIPVVSLVKSDGTVET-LLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE 155 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTSCEEE-EEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEEEEeccCCcceEEEEcCCCCeEEE-EEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEEEE
Confidence 99999766654432 46666766665321 11221 122334555555544 555555688898999 4332 12111
Q ss_pred c---------CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCe--eEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 491 E---------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 491 ~---------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
. ..-.....+ ++++ +.++++-...+.|..|+++. +.. ...+.. ......++++++|+..++..
T Consensus 156 ~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~- 230 (306)
T 2p4o_A 156 HPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH- 230 (306)
T ss_dssp CGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-
T ss_pred CCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-
Confidence 1 111234455 4532 23455556678999999875 211 111110 12345688999998655544
Q ss_pred cCCCCceEEEEeCCCCceee--EeccccCcceEEEEEc---CCCCEEEEEECCC
Q 002264 559 SKDGDSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFD---TTQNHFLAVGEDS 607 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg 607 (945)
+.+.|.++|.. ++... .+... .....+++|. ++++.|++++..+
T Consensus 231 ---~~~~V~~~~~~-G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 231 ---IYNSVVRIAPD-RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ---TTCCEEEECTT-CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ---CCCeEEEECCC-CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCCC
Confidence 36789999975 55532 22222 1257889998 7888888776543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-05 Score=77.61 Aligned_cols=189 Identities=10% Similarity=0.028 Sum_probs=124.6
Q ss_pred ceEEeecCCCcE--EEEEEeCCCCeEEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEE
Q 002264 336 TVAVSLHQGSTV--ISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (945)
Q Consensus 336 ~~~~~~~h~~~V--~~v~fsp~g~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (945)
.++..+.|...- ..+.|+ ++. |..+.+.+| .|+++|+.+++.+.... +. .....
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~-----------------l~---~~~Fg 89 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIE-----------------LG---KRYFG 89 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEE-----------------CC---TTCCE
T ss_pred EEEEEecCCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEe-----------------cC---Cccce
Confidence 345566666554 899999 664 677777665 99999999998875311 11 12222
Q ss_pred EEEcCCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE
Q 002264 412 VAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 412 i~~s~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~ 489 (945)
....++++.|... ..++.+.+||.++.+.+..+. +.+ ....+++|++ .|+.+..++.|.++| .+.+.+.+
T Consensus 90 eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~-~~~-----eG~glt~dg~--~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 90 EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN-YDG-----EGWGLTHNDQ--YLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE-CSS-----CCCCEEECSS--CEEECCSSSEEEEECTTTCSEEEE
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE-CCC-----CceEEecCCC--EEEEECCCCeEEEEcCCCCeEEEE
Confidence 2222335555444 458899999999988776432 222 2234446777 444444578899999 78888777
Q ss_pred ecCCC-----CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------------CCeEEEEEEcCCCCE
Q 002264 490 FEGHE-----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------GHWCTTMLYSADGSR 552 (945)
Q Consensus 490 ~~~~~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~ 552 (945)
+.... ..++.+.|. +|.+.+..-.+..|.+.|..+++....+... ....+.++|+|+++.
T Consensus 162 I~V~~~g~~~~~lNELe~~---~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~ 238 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV---DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR 238 (262)
T ss_dssp EECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred EEeccCCccccccceeEEE---CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence 65421 334556664 5565555557889999999998887766543 235689999999999
Q ss_pred EEEEe
Q 002264 553 LFSCG 557 (945)
Q Consensus 553 l~~~~ 557 (945)
|++.+
T Consensus 239 lfVTG 243 (262)
T 3nol_A 239 LFVTG 243 (262)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88887
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.0011 Score=75.59 Aligned_cols=206 Identities=10% Similarity=-0.009 Sum_probs=120.9
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeecccccc------EEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGA------VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~------v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~ 490 (945)
+..+++++.++.|.-+|..+|+.+-....-...... -..++. .+. .++.++.|+.|..+| .+|+.+...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEeee
Confidence 344555555444888898888765322110000000 011222 234 567778899999999 899988766
Q ss_pred cCCCC----CEE-EEEeeec-CCcc-EEEEEE------cCCeEEEEEccCCCeeEEecCCCCeE----------------
Q 002264 491 EGHEA----PVY-SICPHHK-ENIQ-FIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWC---------------- 541 (945)
Q Consensus 491 ~~~~~----~v~-~~~~~~~-~~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i---------------- 541 (945)
..... .+. .-.+... .+++ .+++++ .++.|..+|..+++.+.........+
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 53221 111 1111111 1222 566654 37899999999988877654321100
Q ss_pred -------------------------EEEEEcCCCCEEEEEeecC----------CC----------CceEEEEeCCCCce
Q 002264 542 -------------------------TTMLYSADGSRLFSCGTSK----------DG----------DSFLVEWNESEGTI 576 (945)
Q Consensus 542 -------------------------~~~~~s~~~~~l~~~~~~~----------d~----------~~~i~iwd~~~~~~ 576 (945)
..+++.|+...++.+..+. .+ .+.|.-+|..+|+.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 1345667777777665310 11 16899999999999
Q ss_pred eeEeccccC--------cceEEEEEc-CCCC---EEEEEECCCcEEEEECCCCeeEEEeecCC
Q 002264 577 KRTYAGFRK--------KSNGVVQFD-TTQN---HFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 577 ~~~~~~~~~--------~~~~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
+-.++.... .....+... .+|+ .++.++.+|.++++|..+|+.+.......
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccccc
Confidence 887754211 011112222 4564 67788899999999999999998876643
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.0014 Score=69.03 Aligned_cols=279 Identities=9% Similarity=0.038 Sum_probs=149.9
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
...+.+|.|.+++. ++++| .+|.| +...+.|+.-..... ........+.+|.|++ +..++
T Consensus 35 ~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~- 94 (327)
T 2xbg_A 35 TATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI- 94 (327)
T ss_dssp SSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-
T ss_pred CCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-
Confidence 45799999988877 46655 46654 333444432211000 0112345788999986 44444
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE-EEecCCCCCEEEEEe
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSICP 502 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~v~~~~~ 502 (945)
++.++.|.. ..+.|+..........+.+.+..+.+.+++. .++.+ .++.|..-...|+.- .........+..+.+
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEE
Confidence 455664433 4455554442221112345678888887776 55555 456543322234322 222345567888887
Q ss_pred eecCCccEEEEEEcCCeE-EEEEccCCCeeEE-ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe
Q 002264 503 HHKENIQFIFSTAIDGKI-KAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (945)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~ 580 (945)
.+ ++.+++.+ .+|.+ +-+|-. +..-.. .......+..+.+.++++.++++. ++.+++.+...++.-..+
T Consensus 171 ~~--~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 171 SP--SGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp CT--TSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCC
T ss_pred cC--CCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEec
Confidence 65 45666555 44544 333320 111111 122345688899999987765543 566776642223322222
Q ss_pred ccc---cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC-CCCCCccEEEEcCCCCEEEEEECCCcEEEE
Q 002264 581 AGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (945)
Q Consensus 581 ~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw 656 (945)
... ....+..+.+.+++..++ ++.+|.| .+..+.|+.-..+... .....+.++.|.+++. +++++.+|.|.-+
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~-~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWL-AGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRY 318 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEE-EESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred cCCcccCCcceEEEEecCCCEEEE-EeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence 211 112467788888766554 4557777 4556666655555422 1123678899976554 6666778877665
Q ss_pred EC
Q 002264 657 AN 658 (945)
Q Consensus 657 ~~ 658 (945)
+-
T Consensus 319 ~~ 320 (327)
T 2xbg_A 319 VT 320 (327)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-05 Score=76.14 Aligned_cols=182 Identities=7% Similarity=0.043 Sum_probs=125.6
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~ 485 (945)
.....+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. .....-..++++. +.+..-.++.+.+|| .+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence 345678887 4667777788899999999999887754 322 2323223335554 445566789999999 8899
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--C---eEEEEEEcCCCCEEEEEeecC
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--H---WCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+.++..... -..++ + +++.|+.+..++.|.++|..+.+....+.... . .++.+.|. +|+ |.+...
T Consensus 128 ~~~ti~~~~e-GwGLt--~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-- 198 (268)
T 3nok_A 128 RERTTRYSGE-GWGLC--Y--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-- 198 (268)
T ss_dssp EEEEEECSSC-CCCEE--E--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred EEEEEeCCCc-eeEEe--c--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence 8888875322 24444 3 34567666679999999999888777665422 1 44667776 665 444443
Q ss_pred CCCceEEEEeCCCCceeeEeccc------------cCcceEEEEEcCCCCEEEEEEC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
....|.+.|..+++.+..+... .....+.++++|+++.|++.+.
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 3678999999999988877642 1225788999998877777764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.6e-05 Score=75.77 Aligned_cols=180 Identities=10% Similarity=0.023 Sum_probs=125.9
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCE--EEEEeeecCCccEEEEEEcCCeEEEEEccCCC
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 529 (945)
....+.|+. +. ++++.+.+|.|+++| .+++.+..+ -.... -.+++ .++ ++.+..-.++.+.+||..+.+
T Consensus 56 ftqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~-~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 56 FTQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGE-RLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CEEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSS-CEEEEESSSCEEEEEETTTTE
T ss_pred ccceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCC-EEEEEEccCCEEEEEECCcCc
Confidence 457888873 43 778888889999999 888887776 22233 33443 333 556666678999999999998
Q ss_pred eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc----ceEEEEEcCCCCEEEEEE-
Q 002264 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVG- 604 (945)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~- 604 (945)
.+.++...... .. +++|++.|+.+. +++.|.++|..+.+.+..+...... .++.+.|. +|. +++..
T Consensus 128 ~~~ti~~~~eG-wG--Lt~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw 198 (268)
T 3nok_A 128 RERTTRYSGEG-WG--LCYWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW 198 (268)
T ss_dssp EEEEEECSSCC-CC--EEEETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred EEEEEeCCCce-eE--EecCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC
Confidence 88877765432 23 336788877764 4889999999999988877643221 23556666 564 55554
Q ss_pred CCCcEEEEECCCCeeEEEeecCC-----------CCCCccEEEEcCCCCEEEEEEC
Q 002264 605 EDSQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
.++.|.+.|..+++.+..+...+ ...-.+.++++|+++.|++.+.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 68899999999999998886531 1124688999997766666553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00048 Score=73.19 Aligned_cols=247 Identities=13% Similarity=0.018 Sum_probs=148.9
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~ 424 (945)
+..+|.+..+++ +|+++ ....|+..++...... .+.. .-..+..++|++.+..|..+
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~-------------------~~~~-~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYT-------------------LLLN-NLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEE-------------------EEEC-SCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeE-------------------Eeec-CCCceEEEEEeccccEEEEE
Confidence 345677777744 44443 2456777777554321 1122 23457899999866666555
Q ss_pred -ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-cCCCCCEEEEEe
Q 002264 425 -FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICP 502 (945)
Q Consensus 425 -~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~~v~~~~~ 502 (945)
...+.|..++++++.... .+.........+++.+.+.. ++++-...+.|.+.+.+|.....+ ...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 456789999988654222 12222344678999986664 455666678899999666543333 333456788998
Q ss_pred eecCCccEEEEEEcC-CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 503 HHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 503 ~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
.|. ++.++++-... +.|..++++.................++++|++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 775 34555555555 78888887654433332333446789999998888877653 46789999986543332232
Q ss_pred cccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEee
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (945)
... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 243 ~~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC-CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 222 245566663 33344444466778777766666555554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00047 Score=73.25 Aligned_cols=217 Identities=10% Similarity=-0.041 Sum_probs=135.3
Q ss_pred ceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
...........+..++|++.++.|..+-...+.|..++...+.... +....-.....+++.
T Consensus 64 ~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd 124 (349)
T 3v64_C 64 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVD 124 (349)
T ss_dssp CEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEE
T ss_pred eeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-------------------EEeCCCCCccEEEEe
Confidence 3344444555789999998777667776667889999987654221 111122345688999
Q ss_pred CCCCEE-EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-CcEEEEeCCCceEEEecC-
Q 002264 416 PDGNYV-GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-KLIKVWELSGRKLFNFEG- 492 (945)
Q Consensus 416 ~~g~~l-as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~- 492 (945)
+.+..| ++-...+.|.+.++++..... .+...-.....+++.|.+.. ++++-... +.|...+.+|.....+..
T Consensus 125 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~---l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 125 WVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEE---EECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred cCCCeEEEEcCCCCeEEEEcCCCCceEE---EEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 865555 444556789999987643221 12233456789999997764 44444444 788888877765555432
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
.-.....+++++. ++.+.++-...+.|..+|++.................+++. +..++.+.. +.+.|..++..
T Consensus 201 ~~~~PnGla~d~~-~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~---~~~~V~~~~~~ 274 (349)
T 3v64_C 201 HLFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW---HTKSINSANKF 274 (349)
T ss_dssp SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEET---TTTEEEEEETT
T ss_pred CCCCcceEEEeCC-CCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecC---CCCeEEEEEcc
Confidence 3345788999765 33555555667889999987654444343334456677772 334544432 36778888866
Q ss_pred CCceeeEec
Q 002264 573 EGTIKRTYA 581 (945)
Q Consensus 573 ~~~~~~~~~ 581 (945)
+++....+.
T Consensus 275 ~G~~~~~i~ 283 (349)
T 3v64_C 275 TGKNQEIIR 283 (349)
T ss_dssp TCCSCEEEE
T ss_pred CCCccEEec
Confidence 666555554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00036 Score=75.33 Aligned_cols=247 Identities=13% Similarity=0.022 Sum_probs=149.9
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~- 424 (945)
.-+|.+..+.+ +|+++ ....|+..++..+.... +.. ....+..++|++.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~-------------------~~~-~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL-------------------LLN-NLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE-------------------EEC-SCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE-------------------Eec-CCCccEEEEEecCCCeEEEEe
Confidence 34566666643 34443 34678888876543221 122 23458899999866655554
Q ss_pred ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-cCCCCCEEEEEee
Q 002264 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPH 503 (945)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~ 503 (945)
...+.|..++++++.... .+.........+++.+.+.. ++++-...+.|.+.+..|.....+ ...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 456789999988654221 12222334577899986664 455666677888888655543333 3333567888987
Q ss_pred ecCCccEEEEEEcC-CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecc
Q 002264 504 HKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 504 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
|. ++.++++-... +.|..++++.................++++|++..|+.+-. +.+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 65 33445554444 78888887755444443334446789999998888877653 467899999865433333322
Q ss_pred ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
.. .....+++. .+..+++-...+.|..++..+++....+..
T Consensus 287 ~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC-CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 245567773 344444444677888888767766666543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=7.6e-05 Score=85.13 Aligned_cols=266 Identities=11% Similarity=0.035 Sum_probs=156.6
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC------CCcEEE
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT------KHLIQL 432 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~------dg~i~v 432 (945)
.++.++.|+.|..+|..+|+.+ |.......... ..-...++. . ++ .+++++. ++.|..
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~-------W~~~~~~~~~~---~~~~~~P~v----~-~g-~v~vg~~~~~~~~~g~v~a 180 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKIN-------WEVEVCDPKVG---STLTQAPFV----A-KD-TVLMGCSGAELGVRGAVNA 180 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEE-------EEEECCCGGGT---CBCCSCCEE----E-TT-EEEEECBCGGGTCCCEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEE-------EEecCCCCCcc---ceeccCCEE----E-CC-EEEEEecCCccCCCCEEEE
Confidence 3677788999999999999876 32211100000 000111111 1 34 4555544 789999
Q ss_pred EEccCCcccccceeeccc----------------------------------cc-cEEEEEEecCCCeeEEEEEeC----
Q 002264 433 YSYAGSNDLRQHSQIDAH----------------------------------VG-AVNDLAFAYPNKLLCVVTCGD---- 473 (945)
Q Consensus 433 wd~~~~~~~~~~~~~~~h----------------------------------~~-~v~~l~~s~~~~~~~l~s~s~---- 473 (945)
+|.++|+.+-........ .. ....+++.++.. .++.++.
T Consensus 181 ~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g--~vy~~~g~~~~ 258 (571)
T 2ad6_A 181 FDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN--LFYYGSGNPAP 258 (571)
T ss_dssp EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT--EEEEECCCCSC
T ss_pred EECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC--eEEEECCCCcc
Confidence 999998865422111000 00 012356777666 3444432
Q ss_pred --------C----CcEEEEe-CCCceEEEecC--CCC----CEEEEE-eeecCCc---cEEEEEEcCCeEEEEEccCCCe
Q 002264 474 --------D----KLIKVWE-LSGRKLFNFEG--HEA----PVYSIC-PHHKENI---QFIFSTAIDGKIKAWLYDTMGS 530 (945)
Q Consensus 474 --------d----~~i~vwd-~~~~~~~~~~~--~~~----~v~~~~-~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~ 530 (945)
| +.|..+| .+|+.+..+.. |.. .+.... +....+| ..++.++.+|.+.++|..+++.
T Consensus 259 ~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 259 WNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp SCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 2 3599999 88998877653 211 111111 1111245 3577888999999999999888
Q ss_pred eEEecCCC-------------CeE--------------------------EEEEEcCCCCEEEEEeec------------
Q 002264 531 RVDYDAPG-------------HWC--------------------------TTMLYSADGSRLFSCGTS------------ 559 (945)
Q Consensus 531 ~~~~~~~~-------------~~i--------------------------~~~~~s~~~~~l~~~~~~------------ 559 (945)
+....... .++ ..++++|+...+++...+
T Consensus 339 ~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~ 418 (571)
T 2ad6_A 339 IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY 418 (571)
T ss_dssp EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccc
Confidence 76654322 111 235788888877765421
Q ss_pred ------------------C---CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 560 ------------------K---DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 560 ------------------~---d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
. +..+.|..||+.+++.+-.+..... +....+...+..+++++.||.|+.||..+++
T Consensus 419 ~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~--~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 419 RAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp CTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC--ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 0 1357899999999998877654322 2222223346788889999999999999999
Q ss_pred eEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 619 ILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
.+..+...... .-..+.+..+|+.++
T Consensus 497 ~lw~~~~~~~~-~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 497 ELWNFKMPSGG-IGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECSSCC-CSCCEEEEETTEEEE
T ss_pred EEEEEeCCCCc-EeeeEEEEECCEEEE
Confidence 99988765421 123344556666444
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.33 E-value=0.014 Score=69.46 Aligned_cols=486 Identities=12% Similarity=0.072 Sum_probs=241.6
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
...|.++.-..+|. |-.|+.+| +..||..+.+.... .......|.++.. .+| .|-.
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 34799998888885 55566555 77899876532110 0011235777754 355 4555
Q ss_pred EECCCcEEEEEccCCcccccceee-c-cccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC------CC
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQI-D-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH------EA 495 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~-~-~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~------~~ 495 (945)
|+.+ -+..++..+++... .... . -....|.++....+|. +.+ |+.+ -+..++........+... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 47888887654221 1000 0 1234688888887777 333 4444 477888333333333211 12
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.|.++.... ++..|..|+. +-+..+|..+.............|.++....+|...+.. ++-+.+++..+++
T Consensus 192 ~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLEDT--TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEET--TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTSC
T ss_pred eeEEEEEEC--CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCCc
Confidence 377776533 3444555554 457778876544322212223468888888888766543 2348888887665
Q ss_pred eeeEecc------ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec-----CCCCCCccEEEEcCCCCEE
Q 002264 576 IKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-----EGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 576 ~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~l 644 (945)
....... .....|.++....+|. |..|+..| +.++.... ....+.. ......|.++.-..+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4322111 1122477787777765 55566666 55543322 1111111 1112357888888887755
Q ss_pred EEEECCCcEEEEECCCCcc-ccccccC--CccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCC
Q 002264 645 AVTTADNGFKILANAIGLR-SLRAVEN--PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (945)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~-~~~~~~~--~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (945)
+ |+.+ .+..++..++.. ....+.. .........|.++.-..+|.+.+
T Consensus 339 i-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi---------------------------- 388 (758)
T 3ott_A 339 F-GGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI---------------------------- 388 (758)
T ss_dssp E-EETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE----------------------------
T ss_pred E-eeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE----------------------------
Confidence 5 4555 465666544311 1111110 00111122355555555555443
Q ss_pred ccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCC--CCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCC
Q 002264 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST--DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (945)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~ 799 (945)
|+ ++.+..++... ..+......... .....|.++....+|...+ ++..+-+..++.......
T Consensus 389 ----------gt-~~GL~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~ 452 (758)
T 3ott_A 389 ----------AT-DGSINRYDYAT----RQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQS 452 (758)
T ss_dssp ----------EE-TTEEEEEETTT----TEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHC
T ss_pred ----------Ee-CCcHhhcCcCC----CcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEcccccccc
Confidence 22 13344444321 111111110000 0234577787777776444 444445666653210000
Q ss_pred CCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEE-ecCCCeEEEEeccCceEEEEecC-C--CCCe
Q 002264 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM-SATGGKISLFNMMTFKVMTTFMS-P--PPAS 875 (945)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la-~~sd~~i~iwd~~~~~~~~~~~~-h--~~~i 875 (945)
..+..... ..+.... .+ ....|.++...++|++.+ .++.+.|..+|..+++....... . ...+
T Consensus 453 ~~~~~~~~---~~~~~~~------~l----~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~ 519 (758)
T 3ott_A 453 TSGQYIAE---QNYSVHN------GL----SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSP 519 (758)
T ss_dssp CSSEEECS---EEECGGG------TC----SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCE
T ss_pred CCcceecc---ccccccc------cc----ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCccc
Confidence 00000000 0000000 01 234688999999998776 35556688899887665432211 1 2357
Q ss_pred eEEEeecCCCceEEEeecCceEEEEecccceEEEEe--cC-CCcceeEEEecCCcceeeeecCCc
Q 002264 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL--KG-HQKRITGLAFSTSLNILVSSGADA 937 (945)
Q Consensus 876 ~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l--~~-h~~~V~~l~~s~dg~~l~s~~~Dg 937 (945)
.++.... +|.+.+ |+..| +..|+..+++.. .+ .+ ....|.++... +|.+.+++ ..|
T Consensus 520 ~~i~~d~-~g~lWi-gt~~G-l~~~~~~~~~~~-~~~~~gl~~~~i~~i~~~-~g~lWi~t-~~G 578 (758)
T 3ott_A 520 NYLLCDE-DGLLWV-GFHGG-VMRINPKDESQQ-SISFGSFSNNEILSMTCV-KNSIWVST-TNG 578 (758)
T ss_dssp EEEEECT-TSCEEE-EETTE-EEEECC--CCCC-BCCCCC---CCEEEEEEE-TTEEEEEE-SSC
T ss_pred ceEEECC-CCCEEE-EecCc-eEEEecCCCceE-EecccCCCccceEEEEEC-CCCEEEEC-CCC
Confidence 8888777 665554 45554 888887655321 11 11 12446666653 55555543 444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0003 Score=69.82 Aligned_cols=199 Identities=9% Similarity=0.041 Sum_probs=129.1
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.+++..++|+|+++.|.++...++.|...|.. ++.+... .+.+ ......|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-----------------~l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-----------------PLDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-----------------ECSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-----------------ecCC-CCChHHeEEeCCCEEEEE
Confidence 35899999999988777778888999999987 6655321 1222 256788999999987777
Q ss_pred EECCCcEEEEEccCCcccccceee------ccccccEEEEEEecCCCeeEEEEEeCCC--cEEEEe--CCCceEEEec--
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQI------DAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE--LSGRKLFNFE-- 491 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~------~~h~~~v~~l~~s~~~~~~~l~s~s~d~--~i~vwd--~~~~~~~~~~-- 491 (945)
.-.++.+.++++.....+...... ...+.....++|+|.++. |+++.... .|..|+ ..+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 656778999988765432111111 123456799999999985 33344333 455555 2222222221
Q ss_pred -----CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC---------CeEEEEEEcCCCCEEEEEe
Q 002264 492 -----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 492 -----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~ 557 (945)
.+...+.+++++|. .+++++.....+.+..+|... +....+.... .....|+|.++|+..++ +
T Consensus 165 ~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 12345788999986 457888888888999998664 4444444432 25689999999985555 4
Q ss_pred ecCCCCceEEEEe
Q 002264 558 TSKDGDSFLVEWN 570 (945)
Q Consensus 558 ~~~d~~~~i~iwd 570 (945)
. .+.++.+.
T Consensus 242 E----~n~~y~f~ 250 (255)
T 3qqz_A 242 E----PNRFYRFT 250 (255)
T ss_dssp T----TTEEEEEE
T ss_pred C----CceEEEEE
Confidence 2 44565554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00017 Score=70.44 Aligned_cols=183 Identities=16% Similarity=0.113 Sum_probs=126.0
Q ss_pred ccEEEEEEecCCCeeEEEEEeCC--CcEEEEe-CCCceEEEecCCCCC-EEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 452 GAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd-~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.....+.|+. +. ++.+.+.+ ..|+.+| .+|+.+..+.-.... --.+++ .+ +++....-.++.+.+||..+
T Consensus 21 ~ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~-~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 21 AFTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WR-DRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTT
T ss_pred cccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eC-CEEEEEEeeCCEEEEEECCc
Confidence 4567899986 44 56666665 4899999 899988777543221 123343 32 35566666789999999999
Q ss_pred CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----cceEEEEEcCCCCEEEEE
Q 002264 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 603 (945)
.+.+.++...... ..+ .++++.|+.+- +++.|.++|..+.+.+..+..... ..++.+.+. +|. +++.
T Consensus 95 l~~~~ti~~~~~G-wgl--t~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyan 165 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WAL--TSDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLAN 165 (243)
T ss_dssp TEEEEEEECSSCC-CEE--EECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred CcEEEEEeCCCCc-eEE--eeCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEE
Confidence 9888887765432 233 35677776653 478899999999988887765321 124455555 454 5554
Q ss_pred E-CCCcEEEEECCCCeeEEEeecCC-----------CCCCccEEEEcCCCCEEEEEEC
Q 002264 604 G-EDSQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 604 ~-~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
. .+..|.+.|..+++.+..+...+ ...-.+.++++|+++.|++.+.
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4 68899999999999999887442 1124588999998877777664
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00015 Score=70.87 Aligned_cols=184 Identities=8% Similarity=0.026 Sum_probs=123.7
Q ss_pred CccEEEEEEcCCCCEEEEEECCC--cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 406 PISVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~las~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
......+.|++ +.+..+.+.+| .|+.+|+++|+.++... +.. .........+++. +.+..-.++.+.+|| .
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~---~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPP---PYFGAGIVAWRDR-LIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCT---TCCEEEEEEETTE-EEEEESSSSEEEEEETT
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCC---CcceeEEEEeCCE-EEEEEeeCCEEEEEECC
Confidence 45577899986 56666666654 89999999998776432 222 2222222333554 444556789999999 8
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC-----CeEEEEEEcCCCCEEEEEe
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-----HWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~ 557 (945)
+.+.+.++...... ..++ + ++..|+.+..++.|.++|..+.+....+.... ..++.+.+. +|+ +.+..
T Consensus 94 tl~~~~ti~~~~~G-wglt--~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanv 166 (243)
T 3mbr_X 94 TLTPRARFRYPGEG-WALT--S--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANV 166 (243)
T ss_dssp TTEEEEEEECSSCC-CEEE--E--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cCcEEEEEeCCCCc-eEEe--e--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEEE
Confidence 88988888754332 4454 3 34556666668899999999888777665432 245566665 565 44443
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccc------------cCcceEEEEEcCCCCEEEEEEC
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
. ....|.+.|..+++.+..+... .....+.++++|+++.|++.+.
T Consensus 167 w---~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 W---LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp T---TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred C---CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 3 3668999999999998877622 2235788999999888888875
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0015 Score=68.41 Aligned_cols=231 Identities=9% Similarity=0.001 Sum_probs=141.7
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC----ce-EEEecCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RK-LFNFEGHE 494 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~----~~-~~~~~~~~ 494 (945)
+|+.+. ...|+..++++++... .+ .....+.+++|.+.+.. ++++-...+.|..++..+ .. ...+...-
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEEC-CCeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 344443 3468999988765433 22 23456789999987764 555666678999999444 22 22232222
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34577887654 33555666678899999987554443333344567899999977777665431 136888888753
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i 653 (945)
.....+....-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 333333222222567899999888877766 5678999999754433333322222234677775 34555555556788
Q ss_pred EEEECCCC
Q 002264 654 KILANAIG 661 (945)
Q Consensus 654 ~iw~~~~~ 661 (945)
..++..++
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887666
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00045 Score=74.61 Aligned_cols=228 Identities=10% Similarity=-0.052 Sum_probs=138.6
Q ss_pred ccccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCC
Q 002264 326 QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (945)
Q Consensus 326 ~~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (945)
.++.++...............+..++|++.+..|+.+-...+.|..++...+.... ++...
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~ 157 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTG 157 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSS
T ss_pred cceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCC
Confidence 34444433333444445556789999998777667776667889999987654221 11112
Q ss_pred CccEEEEEEcCCCCEE-EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-CcEEEEeCC
Q 002264 406 PISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-KLIKVWELS 483 (945)
Q Consensus 406 ~~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-~~i~vwd~~ 483 (945)
......+++.+.+..| ++-...+.|.+.++++..... .+...-.....+++.|.+.. ++++-... +.|...+..
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETT
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCC
Confidence 2345678998865555 444556788888887543211 22233456789999997774 34444444 778888866
Q ss_pred CceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 484 GRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 484 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
|.....+. ..-.....+++++.. +.+.++-+..+.|..+|++.......+.........+++. +..++.+.. +
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~---~ 307 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW---H 307 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEET---T
T ss_pred CCCcEEEEECCCCCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeC---C
Confidence 65544443 233457889998753 3555566667889999987554444443334456677772 334444432 3
Q ss_pred CceEEEEeCCCCceeeEecc
Q 002264 563 DSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~ 582 (945)
.+.|..++..+++....+..
T Consensus 308 ~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 308 TKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TTEEEEEETTTCCSCEEEEC
T ss_pred CCeEEEEECCCCcceEEEcc
Confidence 67788888667766655543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.8e-05 Score=89.86 Aligned_cols=243 Identities=9% Similarity=-0.039 Sum_probs=135.9
Q ss_pred EEEEcC-CCCEEEEEECCC-----------cEEEEEccCCcccccceeec-cccccEEEEEEecCCCeeEEEEEeC-CCc
Q 002264 411 RVAWSP-DGNYVGVAFTKH-----------LIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGD-DKL 476 (945)
Q Consensus 411 ~i~~s~-~g~~las~~~dg-----------~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~-d~~ 476 (945)
++++.+ +|+.++.|+.+. .+.+||..+++-... ..+. .+.....++++..+++ +++.|+. +..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEECSCCCSSCEEEECTTSC--EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-cccCCCCCCccccccCCCCCC--EEEeCCCCCCc
Confidence 566777 899999987643 588999988754322 1222 2333344678888898 7888874 568
Q ss_pred EEEEe-CCCceEEEecC-CCCCE-EEEEeeecCCccEEEEEE-cC-----CeEEEEEccCCCeeEEe-----cCCCCeEE
Q 002264 477 IKVWE-LSGRKLFNFEG-HEAPV-YSICPHHKENIQFIFSTA-ID-----GKIKAWLYDTMGSRVDY-----DAPGHWCT 542 (945)
Q Consensus 477 i~vwd-~~~~~~~~~~~-~~~~v-~~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~~i~ 542 (945)
+.+|| .+++-. .+.. +.... .++++.+ ++++++.|+ .+ ..+.+||..+..-...- ...... .
T Consensus 267 v~~yd~~t~~W~-~~~~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~ 342 (656)
T 1k3i_A 267 TSLYDSSSDSWI-PGPDMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-K 342 (656)
T ss_dssp EEEEEGGGTEEE-ECCCCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-T
T ss_pred eEEecCcCCcee-ECCCCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-c
Confidence 99999 555432 2211 11111 2223322 567888888 34 46889998765432210 000000 0
Q ss_pred EEEEcCCCCEEEEEeecC-----CCCceEEEEeCCCCceeeEeccccC--------cceEEEEEcC-CCCEEEEEECCC-
Q 002264 543 TMLYSADGSRLFSCGTSK-----DGDSFLVEWNESEGTIKRTYAGFRK--------KSNGVVQFDT-TQNHFLAVGEDS- 607 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~-----d~~~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~l~~~~~dg- 607 (945)
...+..++..++.++.++ .....+..||..+............ ..-.++.+.. +++.+++||.++
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 011223445445544311 0134678899887664433221111 0123344433 567777777432
Q ss_pred ----------cEEEEECCCCeeEEEe--ecCCCCCCccEEEEcCCCCEEEEEECC-----------CcEEEEECCCC
Q 002264 608 ----------QIKFWDMDNVNILTST--DAEGGLPNLPRLRFSKEGNLLAVTTAD-----------NGFKILANAIG 661 (945)
Q Consensus 608 ----------~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~sp~g~~l~~~~~d-----------g~i~iw~~~~~ 661 (945)
.|.+||..+....... ..+.. ..-.+++..|+|++++.|+.+ ..+.+||..+.
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-cccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 5788888777655443 22211 122455677899999999854 46889998765
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.25 E-value=0.021 Score=68.02 Aligned_cols=489 Identities=11% Similarity=0.072 Sum_probs=248.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
...|.|+.-..+|. |-.|+.+| +..||-..-+.... . -......|.++....+|. |-.
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~~----------------~--~~~~~~~i~~i~~d~~g~-lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHFT----------------Y--GENNNTRIYCGVIIDNTY-LYM 78 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECSC----------------T--TSTTSSCEEEEEEETTTE-EEE
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEEc----------------c--CCCCCceEEEEEEcCCCc-EEE
Confidence 34799999999996 44566666 55566322111000 0 011245689988877764 555
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-----CCCCCEE
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-----GHEAPVY 498 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-----~~~~~v~ 498 (945)
|+.+| +..||..+..... ........|.++.. .+|. +..++.+ -+..+|........+. .....|.
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIY 149 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEE
Confidence 66665 7899987753221 11112335777654 3554 3444544 6788883333333431 1134577
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCC------CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
++... .++. |..++.+ -+..++..+.... .+... ...|.++...+++..|..++ ++-+..+|..
T Consensus 150 ~i~~d--~~g~-lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~ 219 (758)
T 3ott_A 150 SIIRT--KDNQ-IYVGTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPS 219 (758)
T ss_dssp EEEEC--TTCC-EEEEETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETT
T ss_pred EEEEc--CCCC-EEEEeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCC
Confidence 77643 3444 4445554 4667776554322 12111 22488888877777655555 2348889987
Q ss_pred CCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC-----CCCCccEEEEcCCCCEEEEE
Q 002264 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~sp~g~~l~~~ 647 (945)
+++.... .......+.++....+|... .|+.+ -+.+++..++.......... ....|.++....+|.+. .|
T Consensus 220 ~~~~~~~-~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iG 295 (758)
T 3ott_A 220 TGQIKQT-EAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LG 295 (758)
T ss_dssp TTEEEEE-EEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EE
T ss_pred CCeEEec-cCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EE
Confidence 7654322 21122257777777776554 45544 58888887665433221111 12357888888777654 45
Q ss_pred ECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCC
Q 002264 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (945)
Q Consensus 648 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (945)
+..| +.++.......... ............|.++....+|.+.+... .+
T Consensus 296 T~~G-l~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~D~~g~lWiGt~-~G---------------------------- 344 (758)
T 3ott_A 296 TDYG-ISLSRYNSALQFIP-ISQITGTGDGNQFYSLFRDSKGFYWFGGA-NG---------------------------- 344 (758)
T ss_dssp ESSS-EEEECCCC-CEEEE-HHHHSCSCCCCBEEEEEECTTCCEEEEET-TE----------------------------
T ss_pred eCCc-ccccccCCceeEEe-cccCCCCCCCceEEEEEEcCCCCEEEeeC-Cc----------------------------
Confidence 5555 54443221111100 00000001123466666666666654321 11
Q ss_pred CccccCCCCCCcccccceeecCCcceeeecC--CCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCcee
Q 002264 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP--ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (945)
Q Consensus 728 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (945)
+..++..... .......... ........|.++.-..+|...+. + ++-+..|+.... ...
T Consensus 345 ----------l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t-~~GL~~~~~~~~------~~~ 405 (758)
T 3ott_A 345 ----------LIRFTDPAGE-RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-T-DGSINRYDYATR------QFI 405 (758)
T ss_dssp ----------EEEESCTTSS-CCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-E-TTEEEEEETTTT------EEE
T ss_pred ----------ceeecccccc-cceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-e-CCcHhhcCcCCC------cEE
Confidence 1111110000 0000000000 00002346788888888875543 3 445666763221 110
Q ss_pred eeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCc-----eEE---EEec---C-CCC
Q 002264 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-----KVM---TTFM---S-PPP 873 (945)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~-----~~~---~~~~---~-h~~ 873 (945)
. +....... .+ ....|.++...++|++.+....+.|.++|..+. ... ..+. + ...
T Consensus 406 ~------~~~~~~~~---~~----~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (758)
T 3ott_A 406 H------YNIVDNTG---TY----NTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM 472 (758)
T ss_dssp E------EEEECCC-----C----BSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred E------eecCCCcC---CC----CCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence 0 00000000 00 234688888888887766544667888886531 111 1111 1 223
Q ss_pred CeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC---CCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG---HQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 874 ~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
.|.++...+ ++++.+.++..+-+..+|..+++....... ....+.++....+|.+.+.+ ..| +..+|
T Consensus 473 ~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~ 542 (758)
T 3ott_A 473 FINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRIN 542 (758)
T ss_dssp CEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEEC
T ss_pred eeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEe
Confidence 588999888 777665333344588899887764432211 12467888888888877754 455 55555
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0038 Score=65.23 Aligned_cols=230 Identities=11% Similarity=-0.016 Sum_probs=137.6
Q ss_pred cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEEccCC---ccc
Q 002264 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGS---NDL 441 (945)
Q Consensus 366 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~-~~dg~i~vwd~~~~---~~~ 441 (945)
...|+..|+.+.+... ++. .-..+..++|++.+..|..+ ..++.|..+++++. ...
T Consensus 9 ~~~I~~i~~~~~~~~~-------------------~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTS-------------------LIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEE-------------------EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEe-------------------hhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 4678889987754321 111 23467899999976665555 44688999998761 222
Q ss_pred ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEEeeecCCccEEEEEEcC-Ce
Q 002264 442 RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID-GK 519 (945)
Q Consensus 442 ~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d-g~ 519 (945)
.. .+...-.....+++.+.+.. ++++-...+.|.+.+..+.....+. ........+++.|. ++.++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCe
Confidence 21 12222235678999876654 4556667889999996665544432 23356788888764 33444444333 68
Q ss_pred EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe-ccc-cCcceEEEEEcCCC
Q 002264 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY-AGF-RKKSNGVVQFDTTQ 597 (945)
Q Consensus 520 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 597 (945)
|...+++...........-.....+++++++..|+.+-. +.+.|..+|+.... .+.+ ... .......+++. .+
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~ 219 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-ED 219 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TT
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CC
Confidence 888887654433333333456789999998888877653 46789999987433 2333 211 11134556664 24
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEee
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTD 624 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (945)
..+++-...+.|..++..+++.+..+.
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 444444467788888877776555543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0011 Score=71.91 Aligned_cols=231 Identities=9% Similarity=-0.042 Sum_probs=136.6
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+..++...............+..++|++.+..|..+-...+.|..+++........ ...++...-
T Consensus 94 I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~---------------~~~~~~~~~ 158 (400)
T 3p5b_L 94 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDI 158 (400)
T ss_dssp EEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC---------------CEEEECSSC
T ss_pred eEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc---------------ceEEEeCCC
Confidence 44444333444445556678999999997776666666678898888765321000 001122234
Q ss_pred ccEEEEEEcCCCCEE-EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCC
Q 002264 407 ISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSG 484 (945)
Q Consensus 407 ~~V~~i~~s~~g~~l-as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~ 484 (945)
.....+++.+.+..| ++-...+.|.+.++++..... .+...-.....|++.|.+.. ++++- +..+.|...+.+|
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~---l~~~~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE---EEECSSCCEEEEEEETTTTE-EEEEECSSSCCEEEEETTS
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE---EEeCCCCCcceEEEecccCe-EEEEeCCCCCEEEEEeCCC
Confidence 567889999855444 444557789999987653222 22223445789999997764 33333 3347888888777
Q ss_pred ceEEEec-CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--CCCeEEEEEEcCCCCEEEEEeecCC
Q 002264 485 RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTSKD 561 (945)
Q Consensus 485 ~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~d 561 (945)
.....+. ..-.....|++.+.. +.+.++-...+.|..+|++.......... .-.....+++ ++..++.+-.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~--- 308 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI--- 308 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEES---
T ss_pred CccEEEEECCCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecC---
Confidence 6544443 333567889997653 34455555678899999876544433332 1223456666 3444544432
Q ss_pred CCceEEEEeCCCCceeeEecc
Q 002264 562 GDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~ 582 (945)
+.+.|..+|..+++.+..+..
T Consensus 309 ~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 309 INEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp SSCSEEEEESSSCCCCEEEEC
T ss_pred CCCeEEEEEcCCCCceEEEec
Confidence 366788888777766665543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0039 Score=67.49 Aligned_cols=232 Identities=9% Similarity=-0.006 Sum_probs=146.5
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC-----ceEEEecCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG-----RKLFNFEGHE 494 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~-----~~~~~~~~~~ 494 (945)
+|+.+. ...|+..++++..... +......+..++|.+.+.. ++++-...+.|..++..+ .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 4678888888654332 2234567889999987764 455555678888888544 2233333344
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.....+++.+. .+.+.++-...+.|.+.+++.......+.........+++.|.+..|+.+-. ...+.|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 56778888764 3456666667889999988766555444444456789999998777776542 11367888887644
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i 653 (945)
......... -.....+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+.|
T Consensus 236 ~~~~~~~~~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECC-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 333332222 12567899999888887776 5678999998765544444332222234566663 33445555566789
Q ss_pred EEEECCCCc
Q 002264 654 KILANAIGL 662 (945)
Q Consensus 654 ~iw~~~~~~ 662 (945)
..++..++.
T Consensus 314 ~~~~~~~G~ 322 (400)
T 3p5b_L 314 FSANRLTGS 322 (400)
T ss_dssp EEEESSSCC
T ss_pred EEEEcCCCC
Confidence 989877763
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0026 Score=66.26 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=143.3
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEEcc
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYA 436 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~-~~dg~i~vwd~~ 436 (945)
+||++. ...|+..++........ .....-..+..++|++.+..|..+ ...+.|..++++
T Consensus 6 ~ll~~~--~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~ 65 (318)
T 3sov_A 6 LLLYAN--RRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN 65 (318)
T ss_dssp EEEEEC--EEEEEEEETTCTTSCCE------------------EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETT
T ss_pred EEEEEc--cCeEEEEECCCCceEEE------------------EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEcc
Confidence 344443 57899999876531110 011122357789999965555544 456789999988
Q ss_pred CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEEeeecCCccEEEEEE
Q 002264 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
++..... .+...-.....+++.+.+.. ++++-...+.|.+++..|.....+. ........+++.|.. ..|+.+.
T Consensus 66 g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td 140 (318)
T 3sov_A 66 KTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTD 140 (318)
T ss_dssp SSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEE
T ss_pred CCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEe
Confidence 7632211 12222345678999976654 5556666788999996665444432 344567889988753 3444444
Q ss_pred --cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEE
Q 002264 516 --IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (945)
Q Consensus 516 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 593 (945)
..+.|...+++...........-.....+++++++..|+.+-. ..+.|..+|+..........+.. .....+++
T Consensus 141 ~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~-~~P~glav 216 (318)
T 3sov_A 141 WGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL-PHPFALTL 216 (318)
T ss_dssp CSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC-SCEEEEEE
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC-CCceEEEE
Confidence 3578888887654433333333346789999998888877653 47789999986433322222222 24555666
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
.. +..+++-...+.|..++..+++....+..
T Consensus 217 ~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 217 FE-DILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 53 33444444677888888877776655543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00032 Score=83.26 Aligned_cols=246 Identities=8% Similarity=-0.053 Sum_probs=130.3
Q ss_pred cCCCc-cEEEEEEc-CCCCEEEEEEC-CC----cEEEEEccCC-cccccceeeccccccEEEEEEecCCCeeEEEEEeCC
Q 002264 403 KDVPI-SVSRVAWS-PDGNYVGVAFT-KH----LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (945)
Q Consensus 403 ~~h~~-~V~~i~~s-~~g~~las~~~-dg----~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d 474 (945)
.+|.. .+...+|| |||++||.+.. +| .|+++|+.+| +.+.. .+. .....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEEC
Confidence 34553 78899999 99999986543 33 4999999998 63321 121 12457899999985 4433333
Q ss_pred -----CcEEEEe-CCCc--eEEEecC-CCCCEEEEEeeecCCccEEEEEEc---CCeEEEEEccCCC-ee--EEec-CCC
Q 002264 475 -----KLIKVWE-LSGR--KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMG-SR--VDYD-APG 538 (945)
Q Consensus 475 -----~~i~vwd-~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~~-~~~ 538 (945)
..|.+++ .++. ....+.. ......++.|++ ||++|+..+. ...|.++|+.++. .. ..+. ...
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 2577777 3332 1223322 223455667765 6677776553 3457788887653 22 2222 223
Q ss_pred CeEEEEEEcCCCCEEEEEeecC-CCCceEEEEeCCCC-ceee-EeccccCcceEEEEEcCCCCEEE-EEECCCc--EEEE
Q 002264 539 HWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEG-TIKR-TYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQ--IKFW 612 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~-d~~~~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~--i~iw 612 (945)
....++.|+ +|+.|+..+... .+...|..+|+.++ .... .+.......+..+.+. ++.|+ +...+|. |+++
T Consensus 320 ~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 344444443 366666655322 24567888888753 3222 2332222133444444 45554 4556665 5556
Q ss_pred EC-------CCCeeEEEeecCCCCCCccEEEE----cCCCC-EEEEEECC---CcEEEEECCCC
Q 002264 613 DM-------DNVNILTSTDAEGGLPNLPRLRF----SKEGN-LLAVTTAD---NGFKILANAIG 661 (945)
Q Consensus 613 d~-------~~~~~~~~~~~~~~~~~v~~v~~----sp~g~-~l~~~~~d---g~i~iw~~~~~ 661 (945)
++ .++.....+..... ..+..+.+ ++++. ++++.+.. ..+..+|+.++
T Consensus 397 dl~~~~~~~~~g~~~~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVMEEP-IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCCCCS-SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred ecccccccccCCccceEECCCCc-eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 65 34431344433221 11223322 34554 44443332 45777777665
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0028 Score=62.88 Aligned_cols=206 Identities=12% Similarity=0.104 Sum_probs=132.0
Q ss_pred eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecC-CCCCEEEEEeeecCCccEEEEEEcCCeEEEEE
Q 002264 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (945)
Q Consensus 446 ~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (945)
.+.+-...+..++|+|++.. ++++...++.|...|.+++.+..+.- -....-.+++. +++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~-L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~--~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNT-LFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYI--GDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTE-EEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEEC--STTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCE-EEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEe--CCCEEEEEECCCCcEEEEE
Confidence 34455567999999998775 45556668899999966888877642 22457777775 3666767766778899998
Q ss_pred ccCCCee---EEec------CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC-CCceeeEec------cccCcce
Q 002264 525 YDTMGSR---VDYD------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYA------GFRKKSN 588 (945)
Q Consensus 525 ~~~~~~~---~~~~------~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~-~~~~~~~~~------~~~~~~~ 588 (945)
+...... .... ........++|+|+++.|+++... ....|+.|+-. ....+..+. .......
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 8765531 1221 123356899999999888877641 12256666511 111112111 1111246
Q ss_pred EEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCC-------CCCccEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 589 GVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 589 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
..++++|....+++.+ ..+.|.++|.. ++.+..+..... ...-..|+|.++|+ |+..++.+.++.+..
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 7899999876666655 66778889975 557766665532 23457899999998 445577777776654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00062 Score=74.57 Aligned_cols=240 Identities=8% Similarity=0.123 Sum_probs=136.8
Q ss_pred cEEEEEEcC-CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC-CC----cEEEEe
Q 002264 408 SVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK----LIKVWE 481 (945)
Q Consensus 408 ~V~~i~~s~-~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-d~----~i~vwd 481 (945)
....++++| ++..|.++...+.|+.+|++++... .+.........++|+++|+. |+.+.. ++ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEEe
Confidence 457899998 4666666665578999998875432 22234456889999999984 444432 22 233344
Q ss_pred CCCceE--EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEEEEEee
Q 002264 482 LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 482 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
..+... ..+.. ......+++++. ++.++++-..++.|..++.+.......... .......++|+|+|++|+.+..
T Consensus 212 ~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 212 RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 444322 22221 223456677653 456666666788999999876554222222 2235678999999997766643
Q ss_pred cCCCCceEEEEeCCC--Cce--eeEeccc------cC--------cceE-EEEEc--------CCCCEEEEEECCCcEEE
Q 002264 559 SKDGDSFLVEWNESE--GTI--KRTYAGF------RK--------KSNG-VVQFD--------TTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~--~~~--~~~~~~~------~~--------~~~~-~~~~~--------~~~~~l~~~~~dg~i~i 611 (945)
..+.|..++... +.. ...+.+. .. .... .+++. +++..+++=...+.|+.
T Consensus 290 ---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 290 ---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp ---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred ---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 367888877542 222 1222211 00 0122 45553 33444444446678888
Q ss_pred EECCCCeeEEEeec---------CC------CCCCccEEEEcCC-CCEEEEEECCCcEEEEECC
Q 002264 612 WDMDNVNILTSTDA---------EG------GLPNLPRLRFSKE-GNLLAVTTADNGFKILANA 659 (945)
Q Consensus 612 wd~~~~~~~~~~~~---------~~------~~~~v~~v~~sp~-g~~l~~~~~dg~i~iw~~~ 659 (945)
++ .+|........ .+ .......++++|+ +.++++-...+.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 45654433321 00 0123578999995 5555554456778877653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0028 Score=74.42 Aligned_cols=221 Identities=9% Similarity=-0.021 Sum_probs=131.7
Q ss_pred ceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
....+......+.+++|++.+.+|+++-...+.|+.+++........ ...++...-.....|++.
T Consensus 415 ~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 415 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEE
T ss_pred cceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCCCCcceeeee
Confidence 33444455678899999997666667766678888888765321000 001122233456789999
Q ss_pred CCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCCceEEEecC-
Q 002264 416 PDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFEG- 492 (945)
Q Consensus 416 ~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~- 492 (945)
+.++.|..+ ...+.|.+.++++... +. .+...-.....|++.|.+.. ++++- +..+.|.+.+..|.....+..
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~-~~--l~~~~l~~P~gIaVDp~~g~-LYwtD~g~~~~I~~~~~dG~~~~~lv~~ 555 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKR-KT--LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTE 555 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSE-EE--EEECTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeE-EE--EEeCCCCCcceEEEecCCCC-EEEecCCCCCeEEEEecCCCceEEEEeC
Confidence 877655544 4567899999876432 21 12233446889999998764 33333 333678888877776655543
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCEEEEEeecCCCCceEEEEe
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd 570 (945)
.-.....|++.+.. +.++++-...+.|...+++............ .....|++ ++..|+.+-. +.+.|...|
T Consensus 556 ~l~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~---~~~~I~~~d 629 (791)
T 3m0c_C 556 NIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI---INEAIFSAN 629 (791)
T ss_dssp SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET---TTTEEEEEE
T ss_pred CCCCceEEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC---CCCEEEEEe
Confidence 33568889987653 3455555566789999987655444443321 23345555 3445555432 366777777
Q ss_pred CCCCceeeEec
Q 002264 571 ESEGTIKRTYA 581 (945)
Q Consensus 571 ~~~~~~~~~~~ 581 (945)
..+++.+..+.
T Consensus 630 k~tG~~~~~l~ 640 (791)
T 3m0c_C 630 RLTGSDVNLLA 640 (791)
T ss_dssp TTTCCCCEEEE
T ss_pred CCCCcceEEee
Confidence 77766555543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0037 Score=65.16 Aligned_cols=209 Identities=13% Similarity=0.034 Sum_probs=128.7
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE-EE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GV 423 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l-as 423 (945)
..+.+++|.+.++.|..+-...+.|..++...+.... .++...-.....+++.+.+..| ++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~------------------~~~~~~l~~p~glavd~~~g~ly~~ 96 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------------------NVVVSGLLSPDGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC------------------EEEEECCSCCCEEEEETTTTEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE------------------EEEcCCCCCccEEEEEcCCCeEEEE
Confidence 4678999999766667776667889999987653210 0011122346678999755544 45
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-eCCCcEEEEeCCCceEEEec-CCCCCEEEEE
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~ 501 (945)
-...+.|.++++++... .. .+.........+++.|.+.. ++++- +..+.|...+..|.....+. ..-...+.++
T Consensus 97 d~~~~~I~~~~~dG~~~-~~--l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 97 DSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp ETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred ECCCCEEEEEECCCCcE-EE--EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence 45567899999876432 21 12234456789999997663 33333 23577888886665544442 2234568899
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
+++.. +.+.++-+..+.|..+|++.................+++. +..++.+-. +.+.|..++..+++....+.
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~---~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW---STHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCSCEEEE
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec---CCCeEEEEECCCCCceEEEe
Confidence 87743 3555555667889999987544443333334455677764 334444432 46788888887776655544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0019 Score=70.69 Aligned_cols=239 Identities=10% Similarity=0.124 Sum_probs=137.1
Q ss_pred cEEEEEEcCC--CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC---C-cEEEEe
Q 002264 408 SVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD---K-LIKVWE 481 (945)
Q Consensus 408 ~V~~i~~s~~--g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d---~-~i~vwd 481 (945)
....++|+|+ +..|..+...+.|+.++..++.... +.........++|+++|+ ++++.... . .+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEEE
Confidence 4668999995 4455555444889999987765332 333445689999999999 55555422 1 233334
Q ss_pred -CCCce-EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE-ec-CCCCeEEEEEEcCCCCEEEEEe
Q 002264 482 -LSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YD-APGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 482 -~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~-~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
..+.. ...+. .......+++++. ++.+.++-..++.|+.+|..++..... .. ........++++|+++.|+.+-
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 22211 01111 1223455666553 445555666778899998876554122 11 1222334799999999777664
Q ss_pred ecCCCCceEEEEeCC--CCce--eeEeccc--------------cCcceEEEEE---------cCCCCEEEEEECCCcEE
Q 002264 558 TSKDGDSFLVEWNES--EGTI--KRTYAGF--------------RKKSNGVVQF---------DTTQNHFLAVGEDSQIK 610 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~--~~~~--~~~~~~~--------------~~~~~~~~~~---------~~~~~~l~~~~~dg~i~ 610 (945)
. ..+.|+.++.. ++.. ...+.+. .-.....+++ .+++..+++-...+.|+
T Consensus 292 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 292 N---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp T---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred C---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 3 46789987764 3322 1122221 0012456888 66666555555678899
Q ss_pred EEECCCCeeEEEeecCCC----------------CCCccEEEEc-CCCCEEEEEECCCcEEEEECC
Q 002264 611 FWDMDNVNILTSTDAEGG----------------LPNLPRLRFS-KEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-p~g~~l~~~~~dg~i~iw~~~ 659 (945)
.++. +|...... .... ......++++ ++|.++++-...+.|+.++++
T Consensus 369 ~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9985 55443332 2111 1224678888 566655555556778877653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0099 Score=69.79 Aligned_cols=230 Identities=9% Similarity=-0.001 Sum_probs=143.4
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC-----ceEEEecCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG-----RKLFNFEGHE 494 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~-----~~~~~~~~~~ 494 (945)
+|+.+ ....|+..++....... +......+..++|.+.+.. ++++-...+.|+.++..+ .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44433 34568888887654322 2234556889999986664 555666678888888544 2233333344
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.....|++.+.. ++++++-...+.|.+.+++.......+.........|++.|.+.+|+.+-.. ..+.|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 556788887643 3566666778899999987655544444444568899999987777766431 1367888888654
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCc
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNG 652 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~ 652 (945)
.....+.. .-.....+++++.+..|+.+. ..+.|..+++........+..........+|++. +..|+... ..+.
T Consensus 548 ~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 548 DIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 624 (791)
T ss_dssp CEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE
Confidence 43333332 223577899998877877775 5568999998766555544432222233456653 34555544 4577
Q ss_pred EEEEECCCC
Q 002264 653 FKILANAIG 661 (945)
Q Consensus 653 i~iw~~~~~ 661 (945)
|...+..++
T Consensus 625 I~~~dk~tG 633 (791)
T 3m0c_C 625 IFSANRLTG 633 (791)
T ss_dssp EEEEETTTC
T ss_pred EEEEeCCCC
Confidence 888887666
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.031 Score=58.45 Aligned_cols=262 Identities=9% Similarity=0.028 Sum_probs=137.9
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccccee-eccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ-IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~ 485 (945)
..+.+|.|.+++..+++ +..|.| +...+.|+.-..... .......+.++.|.+ +. .++ ++.++.|..-...|+
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~--~~~-~g~~g~i~~S~DgG~ 109 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE--GWI-VGEPPIMLHTTDGGQ 109 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE--EEE-EEETTEEEEESSTTS
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce--EEE-EECCCeEEEECCCCC
Confidence 47899999888888875 467754 444555554332211 112345689999986 33 344 345665544323344
Q ss_pred eEEEec---CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC-CCeeEE-ecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 486 KLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 486 ~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.-.... .+...+..+.+.. ++..++ ++.+|.|. .... +..-.. .......+..+.+.+++.+++++.
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~--~~~~~~-~~~~g~v~--~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~--- 181 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALG--NGSAEM-ITNVGAIY--RTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS--- 181 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEE--TTEEEE-EETTCCEE--EESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET---
T ss_pred CceECccccCCCCCeEEEEEEC--CCCEEE-EeCCccEE--EEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC---
Confidence 333322 2334577777654 344444 44566542 2222 222211 122344688999999988776653
Q ss_pred CCCceEEE-EeC--CCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecC--CCCCCccEE
Q 002264 561 DGDSFLVE-WNE--SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--GGLPNLPRL 635 (945)
Q Consensus 561 d~~~~i~i-wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v 635 (945)
.+.++. .|- .+.+.+ .......+..+.+.+++.. +.++.+|.+++.+.+.++.-..+... .....+.++
T Consensus 182 --~G~~~~S~d~gG~tW~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v 255 (327)
T 2xbg_A 182 --RGSFYSTWEPGQTAWEPH---NRTTSRRLHNMGFTPDGRL-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL 255 (327)
T ss_dssp --TSSEEEEECTTCSSCEEE---ECCSSSCEEEEEECTTSCE-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred --CCcEEEEeCCCCCceeEC---CCCCCCccceeEECCCCCE-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence 344443 342 222332 1222235777888888764 45667788877653334443333322 111257889
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 636 ~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
++.+++..++++. +|.| ++....+ .....+.... .....+..+.|.++++.++
T Consensus 256 ~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~--~~~~~~~~v~~~~~~~~~~ 308 (327)
T 2xbg_A 256 AYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVK--KVPSNFYKILFFSPDQGFI 308 (327)
T ss_dssp EESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGT--TSSSCCCEEEEEETTEEEE
T ss_pred EecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccC--CCCCCeEEEEEECCCceEE
Confidence 9998887776654 6666 3444444 2222111100 0112356677765555444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0046 Score=63.62 Aligned_cols=185 Identities=12% Similarity=0.189 Sum_probs=119.2
Q ss_pred EEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecC--Ccc---EEEEEE-c--CCeEEEEEccCCC-eeEEecC-
Q 002264 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQ---FIFSTA-I--DGKIKAWLYDTMG-SRVDYDA- 536 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~~-~--dg~i~iwd~~~~~-~~~~~~~- 536 (945)
+++...+.+-+.+||.+|+.+..+.. +.++.+...|.- +|+ ++++.. . +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 56666778899999999999998864 557777665421 111 223333 3 5789999875222 2333311
Q ss_pred -----CC-CeEEEEEE--cCC-CC-EEEEEeecCCCCceEEEEeCC-------CCceeeEeccccCcceEEEEEcCCCCE
Q 002264 537 -----PG-HWCTTMLY--SAD-GS-RLFSCGTSKDGDSFLVEWNES-------EGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (945)
Q Consensus 537 -----~~-~~i~~~~~--s~~-~~-~l~~~~~~~d~~~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (945)
.. ..+..+++ +|. ++ ++++.. +++.+..|++. +.+.+++|.... .+..+.+.+....
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 11 34556777 774 44 344443 36889888872 345677776543 5778889998899
Q ss_pred EEEEECCCcEEEEECC-----CCeeEEEeecCCCCCCccEEEE--cCCCC-EEEEEE-CCCcEEEEECC
Q 002264 600 FLAVGEDSQIKFWDMD-----NVNILTSTDAEGGLPNLPRLRF--SKEGN-LLAVTT-ADNGFKILANA 659 (945)
Q Consensus 600 l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--sp~g~-~l~~~~-~dg~i~iw~~~ 659 (945)
|+.+-++.-|+.++.+ ++..+..+....-...+..+++ .++++ +|++++ .+.++.+|+..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998777777755 3455655543322235778888 45555 566655 56799999996
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0053 Score=67.11 Aligned_cols=244 Identities=10% Similarity=0.091 Sum_probs=137.9
Q ss_pred cEEEEEEcC-CCCEEEEE-ECCCcEEEEEccCCcccccceee-ccccccEEEEEE-------ecCCCeeEEEEEeCCC--
Q 002264 408 SVSRVAWSP-DGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAF-------AYPNKLLCVVTCGDDK-- 475 (945)
Q Consensus 408 ~V~~i~~s~-~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~-~~h~~~v~~l~~-------s~~~~~~~l~s~s~d~-- 475 (945)
....|+|+| ++..|..+ ...+.|++.|.+++.... +... .........++| +++|.. ++.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 35545444 444678888888754332 1111 112335899999 999984 44444332
Q ss_pred -----cEEEEe-CC-CceE-----EEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEcc-------CCCe------
Q 002264 476 -----LIKVWE-LS-GRKL-----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------TMGS------ 530 (945)
Q Consensus 476 -----~i~vwd-~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~------ 530 (945)
.|.+.+ .. |... ..+... .....+++++. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666 22 2221 122211 12345666654 44666677788899999987 4433
Q ss_pred -----e-EEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC--CCCcee--eEeccc---c---C--------
Q 002264 531 -----R-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIK--RTYAGF---R---K-------- 585 (945)
Q Consensus 531 -----~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~--~~~~~~--~~~~~~---~---~-------- 585 (945)
. ..+.. .......++|+|+|+.|+.+-. ....|+.++. .++... ..+.+. . +
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 11222 2345678999999997666543 3778888554 333221 222221 0 0
Q ss_pred cceE-EEEEc-------CCCCEEEEEECCCcEEEEECCCCeeEEEeecCCC----------------------CCCccEE
Q 002264 586 KSNG-VVQFD-------TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----------------------LPNLPRL 635 (945)
Q Consensus 586 ~~~~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~v~~v 635 (945)
.... .++.. .++.++++=...+.|+.++ .+|. +.++.+.+. ......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0133 45554 4455555555778899998 4564 334432210 1224578
Q ss_pred EEcCC-CCEEEEEECCCcEEEEECCCC
Q 002264 636 RFSKE-GNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 636 ~~sp~-g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+++++ |.+.++=.....|+.++++..
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 665555555778888888654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0045 Score=67.68 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=93.7
Q ss_pred CcEEEEEEeC-CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 345 STVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 345 ~~V~~v~fsp-~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.....++|+| ++.+|.++ ...+.|..+|..++.... +.........++|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 3678899998 45544444 334889999987654321 1123456889999999996666
Q ss_pred EEC-CC----cEEEEEccCCcccccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEeCCCceEEEe-cC-CCC
Q 002264 424 AFT-KH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWELSGRKLFNF-EG-HEA 495 (945)
Q Consensus 424 ~~~-dg----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~-~~~ 495 (945)
+.. ++ .+.+.+. .+.... ...+. .......++++| +|. ++++-..++.|..++..+.....+ .. ...
T Consensus 196 ad~~~~~~~~~v~~~~~-~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTR-ESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEG-GGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeC-CCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 654 22 2333443 332221 01222 123456788999 566 666666778999999544433222 21 223
Q ss_pred CEEEEEeeecCCcc-EEEEEEcCCeEEEEEccC
Q 002264 496 PVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 496 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 527 (945)
....++|++ +++ ++++-...+.|..++.+.
T Consensus 271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 467888877 556 455555678899988764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0052 Score=67.18 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=129.5
Q ss_pred CcEEEEEEeCC--CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 345 STVISMDFHPS--HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 345 ~~V~~v~fsp~--g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
....+++|+|+ +..|.++ ...+.|+.+|..+++... +.+.......++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 35779999995 3334444 333899999987765432 222345688999999999444
Q ss_pred EEECC---Cc-EEEEEccCCcccccceeeccccccEEEEEEec-CCCeeEEEEEeCCCcEEEEe-CCCceEEEe-cC-CC
Q 002264 423 VAFTK---HL-IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EG-HE 494 (945)
Q Consensus 423 s~~~d---g~-i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~-~~-~~ 494 (945)
+.... .. +...+...+. .. ...+. .-.....+++.| +|. ++++-..++.|+.+| .++.....+ .. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 43311 11 3333332221 10 01111 233456788999 665 555666678899999 556652322 21 12
Q ss_pred CCEEEEEeeecCCcc-EEEEEEcCCeEEEEEccCCCe----eEEecCC---------------CCeEEEEEE--------
Q 002264 495 APVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGS----RVDYDAP---------------GHWCTTMLY-------- 546 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~---------------~~~i~~~~~-------- 546 (945)
..-..++|++ +++ ++++-...+.|+.++++.... ...+... -.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~ 350 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG 350 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence 2234688876 455 455555678899988763211 1111111 113567888
Q ss_pred -cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc--------C---------cceEEEEEc-CCCCEEEEEECCC
Q 002264 547 -SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--------K---------KSNGVVQFD-TTQNHFLAVGEDS 607 (945)
Q Consensus 547 -s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~--------~---------~~~~~~~~~-~~~~~l~~~~~dg 607 (945)
.++|...++-. +.+.|+.++. ++... ++.+.. . .....++++ +++..+++=...+
T Consensus 351 dd~~g~lyvaD~----~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 351 EEDEYDFYFCDR----DSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp SSCCEEEEEEET----TTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred cCCCCcEEEEEC----CCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 56665555433 3678998885 55433 332210 0 125567888 4444333333556
Q ss_pred cEEEEEC
Q 002264 608 QIKFWDM 614 (945)
Q Consensus 608 ~i~iwd~ 614 (945)
.|+.+++
T Consensus 425 rIr~i~~ 431 (433)
T 4hw6_A 425 RVRKIAP 431 (433)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 6766654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.083 Score=55.43 Aligned_cols=252 Identities=12% Similarity=0.144 Sum_probs=147.0
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 642 (945)
...+.+.|+.++..+..-.- ...+.-.+|..+.++.-. ...+.+||+++...++...... .|.-=.|-.+ +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcceeccc----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-C
Confidence 45789999988665433222 123356788888777765 6789999999999998887654 4555555433 4
Q ss_pred EEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCc
Q 002264 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (945)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (945)
.|+..+ +..|+-|++.......+.+..+..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 566555 4589999986543344444332221
Q ss_pred cCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-------cCeEEEEeecC
Q 002264 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWHR 795 (945)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-------dg~i~lw~~~~ 795 (945)
....|.....++++++++..|- .|.+.+|.++.
T Consensus 149 ----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 149 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp ----------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred ----------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 1123444444555555543332 36677776543
Q ss_pred CCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCC---CceEEecC----CCeEEEEeccCc------
Q 002264 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN---DSYVMSAT----GGKISLFNMMTF------ 862 (945)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d---g~~la~~s----d~~i~iwd~~~~------ 862 (945)
.. ...+.| |......+.+.-+ .++++.+. .++++|.++...
T Consensus 189 ~~------------------------sQ~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~ 242 (494)
T 1bpo_A 189 KV------------------------SQPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 242 (494)
T ss_dssp CC------------------------EEEECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCC
T ss_pred cc------------------------cchhee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCC
Confidence 22 111222 3333322222111 12333332 367999988532
Q ss_pred --eEEEE-ec---CCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCC
Q 002264 863 --KVMTT-FM---SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 863 --~~~~~-~~---~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
+.... +- ...+-..++..|+ .-.++..-+.-|.|++||+++|.++..-+--.+.|..-+-.....=++.....
T Consensus 243 f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~ 321 (494)
T 1bpo_A 243 FPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK 321 (494)
T ss_dssp CCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccC
Confidence 11111 11 1234477889998 77789999999999999999999987766555666555544444444445555
Q ss_pred ceE
Q 002264 937 AQV 939 (945)
Q Consensus 937 g~i 939 (945)
|.|
T Consensus 322 GqV 324 (494)
T 1bpo_A 322 GQV 324 (494)
T ss_dssp CEE
T ss_pred ceE
Confidence 554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.029 Score=61.32 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=96.3
Q ss_pred cEEEEEEeC-CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE-------cCC
Q 002264 346 TVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-------SPD 417 (945)
Q Consensus 346 ~V~~v~fsp-~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~-------s~~ 417 (945)
....|+|+| ++..|+++-...+.|++.|..++...... ..-.+.......++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~----------------~~~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL----------------NINTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE----------------CCTTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE----------------ccCccccCCCcEEEEeecccccCCC
Confidence 578999999 45556666555567888888776543210 001112346899999 999
Q ss_pred CCEEEEEECCC-------cEEEEEccC-Ccccc-c-ceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C----
Q 002264 418 GNYVGVAFTKH-------LIQLYSYAG-SNDLR-Q-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---- 482 (945)
Q Consensus 418 g~~las~~~dg-------~i~vwd~~~-~~~~~-~-~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~---- 482 (945)
|++|+++...+ .|.+.+... |.... . ...+... .....++++|++.. ++++-..++.|..+| .
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99777666544 255665443 22210 0 0112111 23457888996553 566677788899999 5
Q ss_pred ---CCce-----------EEE-ec-CCCCCEEEEEeeecCCccE-EEEEEcCCeEEEEEccC
Q 002264 483 ---SGRK-----------LFN-FE-GHEAPVYSICPHHKENIQF-IFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 483 ---~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~ 527 (945)
++.. ... +. +.....+.++|+| +|+. +++-+..+.|+.++.+.
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCC
Confidence 4443 112 11 2233457899877 4564 55556678899877654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.02 Score=59.01 Aligned_cols=199 Identities=12% Similarity=0.185 Sum_probs=125.0
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecC----CCe--eEEEEEeC--CCcEEEEe--CCCce
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----NKL--LCVVTCGD--DKLIKVWE--LSGRK 486 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~--~~l~s~s~--d~~i~vwd--~~~~~ 486 (945)
...+++....++-+.+||+ +|+.+. .+.. +.+..+..-|+ |+. +.+++... +++|.+|+ .....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~---~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLH---SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEE---EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEE---EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3455666667788999999 666665 3332 45666666552 322 23455555 68999996 23344
Q ss_pred EEEecC------CC-CCEEEEEeeecC-Cc-cEEEEEEcCCeEEEEEccC-------CCeeEEecCCCCeEEEEEEcCCC
Q 002264 487 LFNFEG------HE-APVYSICPHHKE-NI-QFIFSTAIDGKIKAWLYDT-------MGSRVDYDAPGHWCTTMLYSADG 550 (945)
Q Consensus 487 ~~~~~~------~~-~~v~~~~~~~~~-~~-~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~s~~~ 550 (945)
+..+.. .. ..++.+|+..++ .+ .++++...+|.+..|++.. .+.+.++... ..+..+...+..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCC
Confidence 655532 11 557778873332 23 3788889999999998842 2233344443 467788888888
Q ss_pred CEEEEEeecCCCCceEEEEeCC-----CCceeeEec-cccCcceEEEEE--cCCCC-EEEEEE-CCCcEEEEECC-CCee
Q 002264 551 SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYA-GFRKKSNGVVQF--DTTQN-HFLAVG-EDSQIKFWDMD-NVNI 619 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~-----~~~~~~~~~-~~~~~~~~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~~ 619 (945)
..|+.+-. +..|..++.. +++.+..+. ++-...+..+++ .++++ ++++++ .++.+.+||.. +.+.
T Consensus 192 g~Lyv~eE----d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~ 267 (355)
T 3amr_A 192 GRLYIAEE----DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY 267 (355)
T ss_dssp TEEEEEET----TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred CeEEEecc----cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence 88888753 4557777754 345555543 222224677777 45555 677776 67799999996 6677
Q ss_pred EEEeecC
Q 002264 620 LTSTDAE 626 (945)
Q Consensus 620 ~~~~~~~ 626 (945)
+..+...
T Consensus 268 vg~f~Ig 274 (355)
T 3amr_A 268 VADFRIT 274 (355)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7777543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.013 Score=59.69 Aligned_cols=164 Identities=10% Similarity=0.030 Sum_probs=108.0
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccc--cCCCccEEEEEE---cCCCCE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF--KDVPISVSRVAW---SPDGNY 420 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~i~~---s~~g~~ 420 (945)
-..+++|.+.+..++++.-..++|..|+...+..... .+. .+. ......+..|.| .|++++
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-------------~~s~~g~~~~~~sGl~~~~~D~~grL 79 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-------------GASSNGDGEQQMSGLSLLTHDNSKRL 79 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-------------TTCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-------------CccccCCCcceeeEEEEeccCCCCcE
Confidence 4567899886665555555789999999875543211 000 000 011224689999 688888
Q ss_pred EEEEEC-------------CCcEEEEEcc---CCcccccceeecccc-----------ccEEEEEEecCCCeeEEEEEeC
Q 002264 421 VGVAFT-------------KHLIQLYSYA---GSNDLRQHSQIDAHV-----------GAVNDLAFAYPNKLLCVVTCGD 473 (945)
Q Consensus 421 las~~~-------------dg~i~vwd~~---~~~~~~~~~~~~~h~-----------~~v~~l~~s~~~~~~~l~s~s~ 473 (945)
+++... +..|..||+. +++.+... .+.... .....++..++|+ ..++++.
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~ 156 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFAL 156 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEE
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCC
Confidence 876442 5779999999 77655322 222211 2488999999999 7788888
Q ss_pred C-CcEEEEeCCCceEEEecC------CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCC
Q 002264 474 D-KLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (945)
Q Consensus 474 d-~~i~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (945)
. +.|...+..|+.+..+.. .....+.|+++| +|..|++....|.+..+|+...
T Consensus 157 ~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 157 GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 8 888888876765444321 122366889877 5567777766999999998853
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00055 Score=79.96 Aligned_cols=225 Identities=8% Similarity=0.005 Sum_probs=128.3
Q ss_pred CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC----ceE-EEecCCCCCEEEEE
Q 002264 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKL-FNFEGHEAPVYSIC 501 (945)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~----~~~-~~~~~~~~~v~~~~ 501 (945)
.+.|+..++.+.+.... + .....+..++|.+.+.. ++++-...+.|+.++..+ ... ..+.........++
T Consensus 385 ~~~I~~id~~~~~~~~~---~-~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL---I-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEECC---S-CCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCcceee---e-ccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 45688888876543321 1 22335678999987774 444445567899998443 211 11111122345677
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
+.+. ++.++++-...+.|.+++++.......+.........+++.|.+.+|+.+.. ...+.|..+++.... ...+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~--~~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC--SSSCCEEBCCSSSCC-CCEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc--CCCCeEEEEeCCCCC-eeEEE
Confidence 6544 3455556566788999987755444333333344577889997776665532 112678777765332 22222
Q ss_pred cccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~ 660 (945)
...-.....+++++++..|+.+. ..+.|..+++........+...........+++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11122456799999876666655 667899999875444433332211123356666544 3444555568899999877
Q ss_pred C
Q 002264 661 G 661 (945)
Q Consensus 661 ~ 661 (945)
+
T Consensus 615 G 615 (699)
T 1n7d_A 615 G 615 (699)
T ss_dssp E
T ss_pred C
Confidence 6
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00066 Score=79.31 Aligned_cols=211 Identities=11% Similarity=-0.044 Sum_probs=122.2
Q ss_pred ccEEEEEEcCCCCEEEEEE-CCCcEEEEEccCC---cccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeC
Q 002264 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGS---NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~-~dg~i~vwd~~~~---~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~ 482 (945)
..+..++|++.+..|..+. ..+.|+.+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 3466789999777666554 4578999998751 11111 11112223556888865553 4555556788999996
Q ss_pred CCceEEEecC-CCCCEEEEEeeecCCccEEEEEEcC-CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 483 SGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 483 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
.+.....+.. .......+++.|.. +.++++-... +.|..++++.................|+++|++..|+.+-.
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~-- 559 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 559 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET--
T ss_pred CCCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec--
Confidence 6665554432 23445677876642 3334333222 67777776543333322222334568999998877776643
Q ss_pred CCCceEEEEeCCCCceeeEeccc-cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
+.+.|..+++........+... .......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 -~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp -TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred -CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 4678999998643332222211 1112334555443 3444445678899999888887776643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.1 Score=54.77 Aligned_cols=239 Identities=13% Similarity=0.137 Sum_probs=146.6
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg 428 (945)
+...+|..+ ++|.-. ..++.|+|+++.+.+... .+ ...|.-=.|-.+ +.|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~-----------------~~---~e~VvfWkWis~-~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAH-----------------TM---TDDVTFWKWISL-NTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEE-----------------EC---SSCCCEEEEEET-TEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcce-----------------ec---CCCceEEEecCC-CeEEEEc-CC
Confidence 455678777 577654 689999999988776431 11 235666666543 4555553 45
Q ss_pred cEEEEEccCCcccccceeeccc----cccEEEEEEecCCCeeEEEEEe------CCCcEEEEeCCCceEEEecCCCCCEE
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~v~ 498 (945)
.|+-|++.+...... .+..| ...|..-..+++.+. ++++|= -.|.+.+|..+.+.-+.+.||...-.
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 799999976433222 33333 346778888889885 333332 24678899977777788888877665
Q ss_pred EEEeeecCC-ccEEEEEEcC---CeEEEEEccCC---Ce-----eEEecC----CCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 499 SICPHHKEN-IQFIFSTAID---GKIKAWLYDTM---GS-----RVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 499 ~~~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~---~~-----~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.+.+..... ..+++.+... +.+++-++... .. ...+.. ..+...++..++....++..+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 554422111 1234444332 78889888543 11 111111 2334567888888888877774
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (945)
-|.+++||+.++.++..-+-... .+...+......-++.....|.|.--.++....
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 89999999999998876554444 444444445555566666666665555554443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.05 Score=57.49 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=61.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC---CCE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~---g~~ 420 (945)
-...+.++|.|+|+ ++++ ..+|.|.+++ +++... +. +. .+..........|+|+|+ +..
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~---~~--~~---------~v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLST---YA--EL---------SVYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEE---EE--EC---------CCCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccE---ee--cc---------eEeecCCCCceeEEECCCCCCCCE
Confidence 44788999999998 5555 5579999998 343210 00 00 012223456889999998 555
Q ss_pred EEEEEC-C-----CcEEEEEccCCcc--cccc-eeec---cccccEEEEEEecCCCeeEEEEE
Q 002264 421 VGVAFT-K-----HLIQLYSYAGSND--LRQH-SQID---AHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 421 las~~~-d-----g~i~vwd~~~~~~--~~~~-~~~~---~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
|..+.. . +.|..|+...+.. .+.+ ..+. +.......++|.|||. +.++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 544433 2 5688888765321 1111 1122 1111236899999997 44543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.1 Score=55.09 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=118.0
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC---CCE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~---g~~ 420 (945)
-...+.++|.|+|+ ++++ ..+|.|.+++ .+++... ..+ .+..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~-~~~--------------~v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLV-ASF--------------DVANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEE-EEC--------------CCCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEe-ecc--------------ceeecCCCceeeEEeCCCCCcCCE
Confidence 45789999999997 5555 5569999887 3443110 000 011222356889999997 445
Q ss_pred EEEEEC----C----CcEEEEEccCCc-cc---ccc-eeec-cccccEEEEEEecCCCeeEEEEEeC-------------
Q 002264 421 VGVAFT----K----HLIQLYSYAGSN-DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCGD------------- 473 (945)
Q Consensus 421 las~~~----d----g~i~vwd~~~~~-~~---~~~-~~~~-~h~~~v~~l~~s~~~~~~~l~s~s~------------- 473 (945)
|..+.. + ..|..|+...+. .+ +.+ ..+. ........++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 444432 3 567777776541 11 111 0111 1111246799999997 4554332
Q ss_pred CCcEEEEeCCCc----------eEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---eEEEEEccCCC-----------
Q 002264 474 DKLIKVWELSGR----------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMG----------- 529 (945)
Q Consensus 474 d~~i~vwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~----------- 529 (945)
.+.|.-++..|+ .+.. .++. ....++|++. ++.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a-~G~r-np~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWS-YGHR-NPQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEE-ECCS-CCCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEE-EccC-CcceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 245555554443 1221 2332 2456777663 234443332221 13222 2111
Q ss_pred -------eeEEecCCCCeEEEEEEc-------CCCCEEEEEeecCCCCceEEEEeCCCC-cee--eEeccccCcceEEEE
Q 002264 530 -------SRVDYDAPGHWCTTMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEG-TIK--RTYAGFRKKSNGVVQ 592 (945)
Q Consensus 530 -------~~~~~~~~~~~i~~~~~s-------~~~~~l~~~~~~~d~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~ 592 (945)
....+.........++|. .+|.++++.. ..+.|...++... +.. ..+.......+..++
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~ 318 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVV 318 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEEE
Confidence 112221123356778884 4565555443 2567888887653 222 222211123577788
Q ss_pred EcCCCCEEEEEE
Q 002264 593 FDTTQNHFLAVG 604 (945)
Q Consensus 593 ~~~~~~~l~~~~ 604 (945)
+.|+|...++..
T Consensus 319 ~~pDG~lyv~~~ 330 (354)
T 3a9g_A 319 IDDDGGILISTS 330 (354)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 888886555543
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00049 Score=53.73 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=33.4
Q ss_pred CCcchHHHHHHHHHHHhhcChHHHHHHHHHhhCCCC
Q 002264 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFF 36 (945)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~ 36 (945)
|+..+.||+.||..||.|.||..||-+|++||.|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 788999999999999999999999999999999864
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.33 Score=49.48 Aligned_cols=166 Identities=8% Similarity=0.084 Sum_probs=106.0
Q ss_pred eccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCC-CceEEE-ecC----CCC--CEEEEEee-ecCCccEEEEEE--
Q 002264 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFN-FEG----HEA--PVYSICPH-HKENIQFIFSTA-- 515 (945)
Q Consensus 447 ~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~-~~~~~~-~~~----~~~--~v~~~~~~-~~~~~~~l~s~~-- 515 (945)
+........+++|.+.... ++++.-..++|..||.. +..... +.+ ... .+..+.|. .+++++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~-~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQV-FYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTE-EEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCE-EEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3334444567899886662 44444478999999944 443322 222 111 35677772 022456666543
Q ss_pred -----------cCCeEEEEEcc---CCCeeEEecCC-------------CCeEEEEEEcCCCCEEEEEeecCCCC-ceEE
Q 002264 516 -----------IDGKIKAWLYD---TMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGD-SFLV 567 (945)
Q Consensus 516 -----------~dg~i~iwd~~---~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~~~d~~-~~i~ 567 (945)
.+..|..||+. +++........ ......++..++|+..++.+. . +.|.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~----~~~~I~ 162 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL----GMPAIA 162 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE----SSCEEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC----CCCeEE
Confidence 26789999998 77766654431 135889999999999888776 5 6777
Q ss_pred EEeCCCCceeeEecc----ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 568 EWNESEGTIKRTYAG----FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 568 iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
.++.........+.. ......+.++++|+++.|++....|.|..+|+.+.
T Consensus 163 rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 163 RVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 777654322211111 11123567999999999999877999999998853
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.05 Score=57.50 Aligned_cols=229 Identities=12% Similarity=0.030 Sum_probs=113.8
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccccee---eccccccEEEEEEecC---CCeeEEEEEeCC-----C
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFAYP---NKLLCVVTCGDD-----K 475 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~---~~~h~~~v~~l~~s~~---~~~~~l~s~s~d-----~ 475 (945)
.....++|.|+|+++++ ..+|.|.+++ +++. ..+.. ..........|+|+|+ +.. +.++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 35679999999995554 5679999988 3431 11111 1122456889999998 553 33333322 5
Q ss_pred cEEEEe-CCCc-----eE-EEec---CCCCCEEEEEeeecCCccEEEEEEc-------------CCeEEEEEccCC----
Q 002264 476 LIKVWE-LSGR-----KL-FNFE---GHEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM---- 528 (945)
Q Consensus 476 ~i~vwd-~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~---- 528 (945)
.|..|+ ..+. .+ ..+. +.......++|.+ +|.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT--TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 677787 4331 11 1132 1111235677766 5555555432 145555554320
Q ss_pred --------CeeEEecCCCCeEEEEEEcC-CCCEEEEEeecCCC-----CceEEEEeCCC----------------Cceee
Q 002264 529 --------GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDG-----DSFLVEWNESE----------------GTIKR 578 (945)
Q Consensus 529 --------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~-----~~~i~iwd~~~----------------~~~~~ 578 (945)
.....+...-.....++|+| ++..+++ -...+. ...|.+..... ..+..
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~-d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSS-EHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEE-EECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEE-EcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00011111112356789999 5554443 321111 01244332211 01122
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCee------EEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI------LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
.+..+ . ....++| .+|..+++.-..+.|...++..... ...+-. ....+..+++.|||.+.++..
T Consensus 263 ~~~~~-~-ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQG-F-PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTC-C-CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCC-C-CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 22111 1 2445666 3455555444566777777654321 111211 123678999999997766653
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00082 Score=60.65 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=73.4
Q ss_pred CHHHHHHHHcCCCCCCCccc---hhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 002264 49 DWDEVEKYLSGFTKVDDNRY---SMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR 125 (945)
Q Consensus 49 ~w~~~~~~l~~~~~~~~~~~---~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (945)
+++++...|..+.....+.+ ...++|+|+.|.||||+..|..++|..|+.+.-..+...+.+.+++|+.+....+..
T Consensus 26 ~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~ 105 (156)
T 2nxp_A 26 MYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMK 105 (156)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHT
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHh
Confidence 35555555555432222222 234899999999999999999999999999877767667789999999998888887
Q ss_pred chhhhcccCC-------chHHHHHHHHHHHh
Q 002264 126 ENEQLSKYGD-------TKTARGIMLIELKK 149 (945)
Q Consensus 126 ~~~~~~~~~~-------~~~~r~~l~~~l~~ 149 (945)
+++....+.. +..+-..|+..|++
T Consensus 106 ~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~ 136 (156)
T 2nxp_A 106 GNETMLDFRTSKFVLRISRDSYQLLKRHLQE 136 (156)
T ss_dssp TCGGGGGGCGGGSEEEEEHHHHHHHHHHHTT
T ss_pred hcHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 7777766654 34445677776665
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.16 Score=53.66 Aligned_cols=230 Identities=11% Similarity=-0.008 Sum_probs=117.8
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceee---ccccccEEEEEEecC---CCeeEEEEEeC---C---
Q 002264 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYP---NKLLCVVTCGD---D--- 474 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~~s~~---~~~~~l~s~s~---d--- 474 (945)
.....++|.|+|++++ +..+|.|++++ .+++ ..+..+ .........|+|+|+ +.. +.++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCc
Confidence 3577899999998555 45679999987 3443 221111 122356889999998 553 3333331 3
Q ss_pred -CcEEEEeCCCc--------eE-EEecC-CCCCEEEEEeeecCCccEEEEEEc-------------CCeEEEEEccCC--
Q 002264 475 -KLIKVWELSGR--------KL-FNFEG-HEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM-- 528 (945)
Q Consensus 475 -~~i~vwd~~~~--------~~-~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~-- 528 (945)
..|..|+.++. .+ ..+.. .......++|.+ +|.+.++.+. .|.|.-++.+..
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p--DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP--DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT--TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC--CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 56777773222 11 11221 111235677766 5666665432 244555544321
Q ss_pred -------CeeEEecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEEeCCC--------C--------ceeeEecccc
Q 002264 529 -------GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE--------G--------TIKRTYAGFR 584 (945)
Q Consensus 529 -------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iwd~~~--------~--------~~~~~~~~~~ 584 (945)
..+.. ..+ .....++|+| +++.+++-. ..+....|.+..... + .++..+. +.
T Consensus 182 ~~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~-g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 257 (354)
T 3a9g_A 182 ADNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEH-GPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SE 257 (354)
T ss_dssp TTSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEEC-CSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEec-CCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CC
Confidence 01111 111 2345789999 555444432 111112344332211 0 1122221 11
Q ss_pred CcceEEEEEc-------CCCCEEEEEECCCcEEEEECCCC-eeE--EEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 585 KKSNGVVQFD-------TTQNHFLAVGEDSQIKFWDMDNV-NIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 585 ~~~~~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
......++|. .++.++++.-..+.|...++... ... ..+- ......+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 1245667773 45655555556778888888753 332 1221 11133688999999997666654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.066 Score=55.24 Aligned_cols=230 Identities=10% Similarity=0.022 Sum_probs=112.1
Q ss_pred CCEEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CCCceE
Q 002264 418 GNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGRKL 487 (945)
Q Consensus 418 g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~~~~~ 487 (945)
+..++.|+.+ ..+..||+.+.+-.. ...+......-..+.+ ++. +++.|+.+ ..+.+|| .+++ -
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~~~-W 89 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVYM--AGL--VFAVGGFNGSLRVRTVDSYDPVKDQ-W 89 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEESCBCSSSBCCCEEEEETTTTE-E
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEEE--CCE--EEEEeCcCCCccccceEEECCCCCc-e
Confidence 4455556543 357888887754221 1112111111112222 454 66666644 3578888 4443 2
Q ss_pred EEecCCCCC--EEEEEeeecCCccEEEEEEcCC-----eEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCEEEEEee
Q 002264 488 FNFEGHEAP--VYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 488 ~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~ 558 (945)
..+.....+ -.+++. . ++.+++.|+.++ .+.+||+.+..-...-..+. .....+. -+++.++.++.
T Consensus 90 ~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 164 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAV-L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGY 164 (302)
T ss_dssp EEECCCSSCCBSCEEEE-E--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred eeCCCCCccccceEEEE-E--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCC
Confidence 333221111 111221 1 446777777654 46778876654332211111 1112222 25666666665
Q ss_pred cCCC---CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeecCCCCC
Q 002264 559 SKDG---DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 559 ~~d~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
+... ...+.+||+.+.+....-.......-..++. -++..++.|+.+ ..+.+||..+.+-...-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3322 3468899998876544321111111112222 246667777653 4689999988765543322211
Q ss_pred CccEEEEcCCCCEEEEEECCC-----cEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg-----~i~iw~~~~~ 661 (945)
.....+..-++++++.|+.++ .+.+||+.+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112122223677777777553 4788887765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.046 Score=56.40 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=114.1
Q ss_pred CCCEEEEEE-CC-----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CCC
Q 002264 417 DGNYVGVAF-TK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSG 484 (945)
Q Consensus 417 ~g~~las~~-~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~~ 484 (945)
++..++.|+ .+ ..+.+||..+++-.. ...+.........+. .++. +++.|+.+ ..+.+|| .++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASVS--LHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEEE--ECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 358899987764221 111221111112222 2454 66667654 4688999 554
Q ss_pred c---eEEE--ecCCCCCEEEEEeeecCCccEEEEEEcCC-----eEEEEEccCCCeeEEecCCC--CeEEEEEEcCCCCE
Q 002264 485 R---KLFN--FEGHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSR 552 (945)
Q Consensus 485 ~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~ 552 (945)
+ -... +.........+. . ++.+++.|+.++ .+.+||..+..-...-..+. .....+. -+++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~--~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATT--L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEE--E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred CCCeeEECCCCCCCccceeEEE--E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence 4 2211 111111111222 1 446777776543 57788877654332221111 1112222 25666
Q ss_pred EEEEeecCC-CCceEEEEeCCCCceeeEeccccCc-ceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeec
Q 002264 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 553 l~~~~~~~d-~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 625 (945)
++.++.+.. ....+.+||+.+.+....-...... ....+.+ ++..++.|+.+ ..+.+||..+.+-...-..
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 666664221 1356889999887654432211111 1122222 45666677653 4689999988775544322
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~ 661 (945)
... .....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 241 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 241 TTP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 221 11222222367777777755 34677777654
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00034 Score=62.09 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=68.6
Q ss_pred CHHHHHHHHcCCCCCCCccc---hhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 002264 49 DWDEVEKYLSGFTKVDDNRY---SMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR 125 (945)
Q Consensus 49 ~w~~~~~~l~~~~~~~~~~~---~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (945)
+++++...|..+.....+.+ ...++|+|+.|.||||+..| .++|..|+.+.-..+...+.+.+++|+.+....++.
T Consensus 9 ~y~~~y~~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~ 87 (148)
T 2j49_A 9 NYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIK 87 (148)
T ss_dssp THHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHh
Confidence 35556666655533333322 23499999999999999999 999999998876666555667888888887777776
Q ss_pred chhhhcccCC-------chHHHHHHHHHHHh
Q 002264 126 ENEQLSKYGD-------TKTARGIMLIELKK 149 (945)
Q Consensus 126 ~~~~~~~~~~-------~~~~r~~l~~~l~~ 149 (945)
+++....+.. +..+-..|+..|++
T Consensus 88 ~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~ 118 (148)
T 2j49_A 88 ENEVASAFQSHKYRITMSKTTLNLLLYFLNE 118 (148)
T ss_dssp HCHHHHHHHSSCEEEEECHHHHHHHHHHHHH
T ss_pred hCHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 6666555533 34444666666654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.065 Score=55.23 Aligned_cols=191 Identities=9% Similarity=0.013 Sum_probs=95.0
Q ss_pred CCCEEEEEECC-----CcEEEEEccCCcc--cccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-CC
Q 002264 417 DGNYVGVAFTK-----HLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LS 483 (945)
Q Consensus 417 ~g~~las~~~d-----g~i~vwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd-~~ 483 (945)
+++.++.|+.+ ..+.+||..+++. ......+.........+.+ ++. +++.|+.+ ..+.+|| .+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCCC
Confidence 57777777754 3589999887651 1111122211122222222 455 56666643 3578888 44
Q ss_pred CceE--EEecCCCCCEEEEEeeecCCccEEEEEEcC-----CeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEE
Q 002264 484 GRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLF 554 (945)
Q Consensus 484 ~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~ 554 (945)
++-. ..+.........+. . ++.+++.|+.+ ..+.+||+.+..-...-..+.. ....+. -+++.++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v 211 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVV--A--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYV 211 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEE--E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred CeEEECCCCCCCcccceEEE--E--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEE
Confidence 4322 22221111111222 1 45677777765 3578888776543322111111 112222 2566666
Q ss_pred EEeecCCC-CceEEEEeCCCCceeeEeccccCc-ceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCee
Q 002264 555 SCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNI 619 (945)
Q Consensus 555 ~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 619 (945)
.++.+... ...+.+||+.+.+....-...... ....+.+ ++..++.|+.+ ..+.+||..+.+-
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 66643221 357899999887654432211111 1222222 56666777654 3577888877654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.095 Score=54.12 Aligned_cols=228 Identities=7% Similarity=-0.015 Sum_probs=113.6
Q ss_pred CEEEEEEC--CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC----CcEEEEe-CCCceEEEec
Q 002264 419 NYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE 491 (945)
Q Consensus 419 ~~las~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d----~~i~vwd-~~~~~~~~~~ 491 (945)
.+++.|+. ...+.+||..+++-.. ...+......-..+. -++. +++.|+.+ ..+.+|| .+++- ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W-~~~~ 86 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSW-YSKL 86 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEE-EEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeE-EECC
Confidence 34555654 3468899988764221 111221111222222 2455 66667654 5688889 54432 2222
Q ss_pred C---CCCCEEEEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEEEEeecC
Q 002264 492 G---HEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 492 ~---~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~ 560 (945)
. .......+. . ++.+++.|+.+ ..+.+||..+..-...-..+.. ....+. -+++.++.++.+.
T Consensus 87 ~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 87 GPPTPRDSLAACA--A--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLG 160 (306)
T ss_dssp CCSSCCBSCEEEE--E--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEES
T ss_pred CCCccccceeEEE--E--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCC
Confidence 1 111111222 1 44677777765 4578888876543322111111 112222 2566666666533
Q ss_pred CC-----CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeecCCCCC
Q 002264 561 DG-----DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 561 d~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
.. ...+.+||+.+.+....-.......-..++.. ++..++.|+.+ ..+.+||..+.+-...-..+....
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 239 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV 239 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence 22 35688999988765433221111111122222 45666666643 468999998876443322221111
Q ss_pred CccEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~ 661 (945)
....+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1222233 67778888754 45777887665
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00048 Score=60.46 Aligned_cols=100 Identities=10% Similarity=0.174 Sum_probs=68.7
Q ss_pred CHHHHHHHHcCCCCCCCccc---hhhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 002264 49 DWDEVEKYLSGFTKVDDNRY---SMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR 125 (945)
Q Consensus 49 ~w~~~~~~l~~~~~~~~~~~---~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (945)
+++++...|..+.....+.+ ...++|+|+.|.||||+..|..++|..|+.+.-..+... .+.+++|+.+....+..
T Consensus 7 ~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~ 85 (138)
T 2j4b_A 7 QMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIH 85 (138)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHh
Confidence 34455555544422222222 224899999999999999999999999999877667666 88999999988887777
Q ss_pred chhhhcccCC-------chHHHHHHHHHHHh
Q 002264 126 ENEQLSKYGD-------TKTARGIMLIELKK 149 (945)
Q Consensus 126 ~~~~~~~~~~-------~~~~r~~l~~~l~~ 149 (945)
+++....+.. +..+-..|+..|++
T Consensus 86 ~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~ 116 (138)
T 2j4b_A 86 ENNFAYTFKNSKYHLSMGRYAFDLLINFLEE 116 (138)
T ss_dssp HCHHHHHHHHSCEEEEEEHHHHHHHHHHHHH
T ss_pred hCHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 6666554433 44555667766665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.25 Score=50.88 Aligned_cols=233 Identities=6% Similarity=-0.087 Sum_probs=114.4
Q ss_pred CeEEEEEeCc--CcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC----CcE
Q 002264 357 QTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----HLI 430 (945)
Q Consensus 357 ~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d----g~i 430 (945)
+++++.|+.+ ..+.+||..+++-..... +......-.++. -+++.++.|+.+ ..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~ 72 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVF--WDNVVYILGGSQLFPIKRM 72 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEE--ETTEEEEECCBSSSBCCEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEE--ECCEEEEEeCCCCCCcceE
Confidence 4577777653 578888887765332100 111111112222 267777777755 568
Q ss_pred EEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC------CcEEEEe-CCCceEEEecCCCCC--EEEEE
Q 002264 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LSGRKLFNFEGHEAP--VYSIC 501 (945)
Q Consensus 431 ~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d------~~i~vwd-~~~~~~~~~~~~~~~--v~~~~ 501 (945)
.+||..+++-.. ...+.........+.+ +++ +++.|+.+ ..+.+|| .+++ -..+.....+ -.+++
T Consensus 73 ~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~ 146 (306)
T 3ii7_A 73 DCYNVVKDSWYS-KLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTES-WHTKPSMLTQRCSHGMV 146 (306)
T ss_dssp EEEETTTTEEEE-EECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTE-EEEECCCSSCCBSCEEE
T ss_pred EEEeCCCCeEEE-CCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCc-eEeCCCCcCCcceeEEE
Confidence 889988764221 1122211111222222 555 66667655 4688899 4443 2222211111 11112
Q ss_pred eeecCCccEEEEEEc---------CCeEEEEEccCCCeeEEecCCCC--eEEEEEEcCCCCEEEEEeecCC-CCceEEEE
Q 002264 502 PHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKD-GDSFLVEW 569 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~d-~~~~i~iw 569 (945)
. . ++.+++.|+. -..+.+||+.+..-...-..... ....+.+ +++.++.++.+.. ....+.+|
T Consensus 147 ~-~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~y 221 (306)
T 3ii7_A 147 E-A--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYY 221 (306)
T ss_dssp E-E--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEE
T ss_pred E-E--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEe
Confidence 1 1 4466677664 34477888876543322111111 1122222 5666666654221 12468899
Q ss_pred eCCCCceeeEeccccCc-ceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEE
Q 002264 570 NESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILT 621 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 621 (945)
|+.+.+....-...... ...++.+ ++..++.|+.+ ..+.+||..+.+-..
T Consensus 222 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 222 DIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp ETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred eCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 99886544321111110 1222333 56677777743 468889988876443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.25 Score=52.10 Aligned_cols=109 Identities=14% Similarity=0.251 Sum_probs=58.4
Q ss_pred CcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC---CCEE
Q 002264 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYV 421 (945)
Q Consensus 345 ~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~---g~~l 421 (945)
...+.|+|.|+|+++++ +...|.|++++.. +.... .+. +. . .+..........|+|+|+ +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~~--~~-------~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PLS--GV-------P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CCB--SC-------C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Eec--CC-------c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 46899999999984344 4567999999853 32110 000 00 0 112223456789999996 4444
Q ss_pred EEE-EC-------CCcEEEEEccCCc-cc---ccc-eeec-----cccccEEEEEEecCCCeeEEEEE
Q 002264 422 GVA-FT-------KHLIQLYSYAGSN-DL---RQH-SQID-----AHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 422 as~-~~-------dg~i~vwd~~~~~-~~---~~~-~~~~-----~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
..+ +. ...|..|+++.+. .+ +.+ ..+. .|. ...++|.|||. +.++.
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~--Lyv~~ 147 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY--LFIAL 147 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE--EEEEE
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc--EEEEE
Confidence 433 22 2346666665431 11 111 0111 132 35799999996 44443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.55 Score=49.42 Aligned_cols=232 Identities=9% Similarity=0.023 Sum_probs=116.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCccccccee----eccccccEEEEEEecC---CCeeEEEEEeC-------
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ----IDAHVGAVNDLAFAYP---NKLLCVVTCGD------- 473 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~----~~~h~~~v~~l~~s~~---~~~~~l~s~s~------- 473 (945)
....|+|.|+|+.|.++...|.|++++.+. .....+.. ..........|+|+|+ +.. +.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 467899999999444556789999998543 21111111 1122446789999996 553 3333222
Q ss_pred CCcEEEEe-CCC--c--eEEE-ecCC------CCCEEEEEeeecCCccEEEEEEcC-------------CeEEEEEccCC
Q 002264 474 DKLIKVWE-LSG--R--KLFN-FEGH------EAPVYSICPHHKENIQFIFSTAID-------------GKIKAWLYDTM 528 (945)
Q Consensus 474 d~~i~vwd-~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~ 528 (945)
...|..|+ ..+ . .... +... ......++|.+ +|.+.++.+.. |.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG--KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS--SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC--CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 23466666 222 1 1111 1111 11235678766 56555554432 45666665432
Q ss_pred C------------eeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc---------------------
Q 002264 529 G------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--------------------- 575 (945)
Q Consensus 529 ~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--------------------- 575 (945)
- ....+...-.....++|+|+...|.++-...++...|.+. ..+.
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i--~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIP--QKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECC--CTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEe--ccCCcCCCCCccCCCCCCCCccCcc
Confidence 0 1111111223577899999444444443211111122221 1110
Q ss_pred ----------eeeEeccccCcceEEEEEcC-------CCCEEEEEECCCcEEEEECCCCeeEEEeecC-CCCCCccEEEE
Q 002264 576 ----------IKRTYAGFRKKSNGVVQFDT-------TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRF 637 (945)
Q Consensus 576 ----------~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~ 637 (945)
++..+..+ . ....+.|.. ++.++++.-..+.|...++..+........- .....+..+++
T Consensus 253 ~~~~~~~~~~P~~~~~~~-~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWKDS-P-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp CBSSCTTSCCCSEEESSC-C-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred cCCCCCCccCCeEEeCCC-c-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 01111111 1 345566653 3555555557778888888766544332211 11236889999
Q ss_pred cCCCCEEEEE
Q 002264 638 SKEGNLLAVT 647 (945)
Q Consensus 638 sp~g~~l~~~ 647 (945)
.|||.+.++.
T Consensus 331 ~pdG~lyv~t 340 (353)
T 2g8s_A 331 GPDGYLYVLT 340 (353)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9999866543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.83 Score=47.41 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeec----CCCCCCccEEEEcCC---CCEEEEE-E--CCCcEEEE
Q 002264 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA----EGGLPNLPRLRFSKE---GNLLAVT-T--ADNGFKIL 656 (945)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~v~~sp~---g~~l~~~-~--~dg~i~iw 656 (945)
....++|.|+|..+++--..|.|++++..++........ .........++++|+ ...|.+. + .++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 467899999998666555589999998766654322111 112235689999995 3444443 2 34556666
Q ss_pred ECCC
Q 002264 657 ANAI 660 (945)
Q Consensus 657 ~~~~ 660 (945)
....
T Consensus 113 ~~~~ 116 (347)
T 3das_A 113 LYDE 116 (347)
T ss_dssp EBCT
T ss_pred EeCC
Confidence 6554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.19 Score=52.45 Aligned_cols=187 Identities=7% Similarity=0.069 Sum_probs=107.8
Q ss_pred EEEEEEecCCCeeEEEEE------------eCCCcEEEEe-CC-CceEEE--ecC-----CCCCEEEEEeeecCCcc--E
Q 002264 454 VNDLAFAYPNKLLCVVTC------------GDDKLIKVWE-LS-GRKLFN--FEG-----HEAPVYSICPHHKENIQ--F 510 (945)
Q Consensus 454 v~~l~~s~~~~~~~l~s~------------s~d~~i~vwd-~~-~~~~~~--~~~-----~~~~v~~~~~~~~~~~~--~ 510 (945)
..+++..|+|. .++++ ..+|.|.++| .+ ...... +.+ .......+.+..+.++. +
T Consensus 52 ~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 44566677665 44444 2688999999 42 112222 222 23467778876643343 3
Q ss_pred EEEEEc--CCeEEEEEccCCCeeE----EecC-CCCeEEEEEEcCCCCEEEEEeec-------------CCCCceEEEEe
Q 002264 511 IFSTAI--DGKIKAWLYDTMGSRV----DYDA-PGHWCTTMLYSADGSRLFSCGTS-------------KDGDSFLVEWN 570 (945)
Q Consensus 511 l~s~~~--dg~i~iwd~~~~~~~~----~~~~-~~~~i~~~~~s~~~~~l~~~~~~-------------~d~~~~i~iwd 570 (945)
+++-.. +.+|.+|+++...... .+.. .-...+.+.+.++|++.++.... ....+.++.+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 5678888877653322 2222 12367899999999877764310 11246777777
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCC-Cee--EEEeecCCCCCCccEEEEcC-CCCEEE
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNI--LTSTDAEGGLPNLPRLRFSK-EGNLLA 645 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~v~~v~~sp-~g~~l~ 645 (945)
.. +......+. ...+.++|+|+++.++++. ..+.|+.|++.. +.. ...+... ...-.+++.+ +|++.+
T Consensus 210 ~~--~~~~~~~~l--~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~---g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 210 PN--DVRVVAEGF--DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGDLWV 282 (355)
T ss_dssp TT--CCEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCCEEE
T ss_pred CC--eEEEeecCC--cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC---CCCceEEEeCCCCcEEE
Confidence 63 322222222 1467899999999888876 578899999863 332 2233221 2346677777 477666
Q ss_pred EEEC
Q 002264 646 VTTA 649 (945)
Q Consensus 646 ~~~~ 649 (945)
++..
T Consensus 283 a~~~ 286 (355)
T 3sre_A 283 GCHP 286 (355)
T ss_dssp EEES
T ss_pred EecC
Confidence 5543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.78 Score=49.83 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=67.6
Q ss_pred CceeEEeecCCCceEEecC--CCeEEEEeccCc------e-------EEEEecCCCCCeeEEEeecCCCceEEEeecCce
Q 002264 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMTF------K-------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (945)
Q Consensus 832 ~~i~~l~~s~dg~~la~~s--d~~i~iwd~~~~------~-------~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~ 896 (945)
.....+.++|||+++++++ +.++.|+|.... + .....+ -.-.....+|.+ +|....+-.-|.+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3456688899999998887 678999987732 1 122333 233478899999 8876677779999
Q ss_pred EEEEecccc----------eEEEEecCCCcceeEEEe------cCCcceeeee
Q 002264 897 IHIYNVRVD----------EVKSKLKGHQKRITGLAF------STSLNILVSS 933 (945)
Q Consensus 897 v~vwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~l~s~ 933 (945)
|.-|++... ..+..+.-|-.+ -.+.- .+||+||++.
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEe
Confidence 999999864 456666655432 22322 4778888875
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.13 Score=52.93 Aligned_cols=192 Identities=7% Similarity=0.004 Sum_probs=92.8
Q ss_pred CCCEEEEEECCC-----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-----cEEEEe-CCCc
Q 002264 417 DGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-LSGR 485 (945)
Q Consensus 417 ~g~~las~~~dg-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-----~i~vwd-~~~~ 485 (945)
+++.++.|+.++ .+.+||..+.+-.. ...+.........+.+ ++. +++.|+.++ .+.+|| .+++
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 677777777543 58889987754221 1112211111222222 455 566666543 467788 4443
Q ss_pred eEEEecCCCCCE--EEEEeeecCCccEEEEEEcC-------CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEE
Q 002264 486 KLFNFEGHEAPV--YSICPHHKENIQFIFSTAID-------GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLF 554 (945)
Q Consensus 486 ~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~ 554 (945)
-..+.....+. .+++. . ++.+++.|+.+ ..+.+||+.+..-...-..+ ......+. -+++.++
T Consensus 136 -W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv 209 (302)
T 2xn4_A 136 -WFHVAPMNTRRSSVGVGV-V--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYA 209 (302)
T ss_dssp -EEEECCCSSCCBSCEEEE-E--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred -EeecCCCCCcccCceEEE-E--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEE
Confidence 22322211111 11221 1 44677776643 34778887765433221111 11112222 2566666
Q ss_pred EEeecCCC-CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeeE
Q 002264 555 SCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNIL 620 (945)
Q Consensus 555 ~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 620 (945)
.++.+... ...+.+||+.+.+....-.......-..++. .++..++.|+.++ .+.+||..+.+-.
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 66642211 3468999998876543322111111111222 2566667776543 4788888776543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.27 Score=50.86 Aligned_cols=227 Identities=9% Similarity=-0.024 Sum_probs=108.6
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC-----C--C----cEEEEe-CCCceEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----D--K----LIKVWE-LSGRKLF 488 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~-----d--~----~i~vwd-~~~~~~~ 488 (945)
++.|+ ..+.+||..+++-.. ..+..........+...++. +++.|+. . . .+.+|| .+++ -.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~ 80 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-WL 80 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTE-EE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCe-EE
Confidence 44454 468899988765321 12222112222233334566 6666663 1 1 266788 4443 33
Q ss_pred EecCCCCCEE--EEEeeecCCccEEEEEEcC--------CeEEEEEccCCCeeEEecCCCCeE-EEEEEcCCCCEEEEEe
Q 002264 489 NFEGHEAPVY--SICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCG 557 (945)
Q Consensus 489 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~ 557 (945)
.+.....+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.... .+++. -+++.++.++
T Consensus 81 ~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGG 156 (315)
T ss_dssp ECCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred ECCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeC
Confidence 3322211111 1121 1 44677777642 357888887654222111111111 12222 3556666665
Q ss_pred ecC--CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeeEEEeecCCCCC
Q 002264 558 TSK--DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGLP 630 (945)
Q Consensus 558 ~~~--d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 630 (945)
... .....+.+||+.+.+....-..........++. -++..++.|+.++ .+.+||..+.+-...-..+..
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-- 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-- 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--
Confidence 411 113468999998765443221111111112222 2566777777544 488899988765544332221
Q ss_pred CccEEEEcCCCCEEEEEECCC--------------cEEEEECCCC
Q 002264 631 NLPRLRFSKEGNLLAVTTADN--------------GFKILANAIG 661 (945)
Q Consensus 631 ~v~~v~~sp~g~~l~~~~~dg--------------~i~iw~~~~~ 661 (945)
.....+..-++++++.|+.++ .+.+||+.+.
T Consensus 234 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 112122222667777777532 3567777655
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=1.1 Score=46.58 Aligned_cols=206 Identities=11% Similarity=0.069 Sum_probs=115.1
Q ss_pred cEEEEEEcCCCCEEEEEE------------CCCcEEEEEccCCc-ccccceeecc-----ccccEEEEEEec--CCCeeE
Q 002264 408 SVSRVAWSPDGNYVGVAF------------TKHLIQLYSYAGSN-DLRQHSQIDA-----HVGAVNDLAFAY--PNKLLC 467 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~------------~dg~i~vwd~~~~~-~~~~~~~~~~-----h~~~v~~l~~s~--~~~~~~ 467 (945)
....++..|+|..+++++ .+|.|.++|.++.. ..+.+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 455667788886666552 68999999987431 12222 2222 234677788766 454323
Q ss_pred EEEEeC--CCcEEEEe--CCCceE---EEecCC-CCCEEEEEeeecCCccEEEEEEc-----------------CCeEEE
Q 002264 468 VVTCGD--DKLIKVWE--LSGRKL---FNFEGH-EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKA 522 (945)
Q Consensus 468 l~s~s~--d~~i~vwd--~~~~~~---~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~i 522 (945)
+++-.. +.+|.+|+ ..+... ..+.+. -...+.+.+.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333332 56788887 333332 333332 23578888866 5566665431 234444
Q ss_pred EEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCC-Cce--eeEeccccCcceEEEEEcC-CCC
Q 002264 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQN 598 (945)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~ 598 (945)
+| .++.. .....-...+.++|+||++.++++.. ..+.|+.|++.. +.. .+.+.. ......+++++ +|+
T Consensus 208 ~d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YS--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp EC--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EE--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 44 33222 22222234688999999999888764 367899999863 332 223321 23567789999 588
Q ss_pred EEEEEECC-CcEEEEECC--CCeeEEEee
Q 002264 599 HFLAVGED-SQIKFWDMD--NVNILTSTD 624 (945)
Q Consensus 599 ~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 624 (945)
..+++..+ +.|..|+.. .+..+..+.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 77766533 344444443 244444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.32 Score=59.15 Aligned_cols=96 Identities=7% Similarity=0.074 Sum_probs=60.0
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 642 (945)
...|.|.|+.++..+..-.- ...+.-.+|..+.++.-. ...+.|||+.+...++...... +|.-=.|-.+ +
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCC-C
Confidence 45788899888654422211 122345788877666654 6789999999988877776543 4554455433 4
Q ss_pred EEEEEECCCcEEEEECCCCccccccc
Q 002264 643 LLAVTTADNGFKILANAIGLRSLRAV 668 (945)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (945)
.|+..+ +..|.-|++.....+.+.+
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHH
Confidence 555544 3489999996543333333
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.47 Score=49.11 Aligned_cols=229 Identities=11% Similarity=0.038 Sum_probs=106.3
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC----CC-------cEEEEeCCCceEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----DK-------LIKVWELSGRKLF 488 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~----d~-------~i~vwd~~~~~~~ 488 (945)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.+||.....-.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37889988765322 11211111112222334565 6677773 12 1667883333333
Q ss_pred EecCCCCC--EEEEEeeecCCccEEEEEEcC-------CeEEEEEccCCCeeEEecCCCCeE-EEEEEcCCCCEEEEEee
Q 002264 489 NFEGHEAP--VYSICPHHKENIQFIFSTAID-------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCGT 558 (945)
Q Consensus 489 ~~~~~~~~--v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~ 558 (945)
.+.....+ -.+++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.... .+++. .+++.++.++.
T Consensus 92 ~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCLFGLGE-V--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCSCEEEE-E--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCE
T ss_pred ECCCCCccccccceEE-E--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCC
Confidence 33221111 112221 1 44677777754 246777776654332211121111 12222 45666666664
Q ss_pred cCC--CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeecCCCCCC
Q 002264 559 SKD--GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 559 ~~d--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
..+ ....+.+||+.+.+....-..........++. -++..++.||.+ ..+.+||..+.+-...-..+.. .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 221 13468999998876543322111111112222 246677777643 3577899887764433222211 1
Q ss_pred ccEEEEcCCCCEEEEEECC--------------CcEEEEECCCC
Q 002264 632 LPRLRFSKEGNLLAVTTAD--------------NGFKILANAIG 661 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~d--------------g~i~iw~~~~~ 661 (945)
....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1112222356777777653 24666776654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.19 Score=51.84 Aligned_cols=231 Identities=6% Similarity=-0.028 Sum_probs=111.9
Q ss_pred CCCCEEEEEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC----C-----CcEEEEeC
Q 002264 416 PDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----D-----KLIKVWEL 482 (945)
Q Consensus 416 ~~g~~las~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~----d-----~~i~vwd~ 482 (945)
-++..++.|+.+ ..+.+||..+++-.. ...+......-. ++. .++. +++.|+. + ..+.+||.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~-~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLA-GCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCE-EEE-ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccce-EEE-ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 356777777642 358899987754221 111111111111 222 2454 5666664 2 46788883
Q ss_pred CCceEEEecCC---CCCEEEEEeeecCCccEEEEEEcC-----CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCE
Q 002264 483 SGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSR 552 (945)
Q Consensus 483 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~ 552 (945)
....-..+... ......+.+ ++.+++.|+.+ ..+.+||..+..-...-..+ ......+.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 33333333211 111112221 44677776644 35778887765432211111 111122222 5666
Q ss_pred EEEEeecCCC-CceEEEEeCCCCceeeEeccccCc-ceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEEEeec
Q 002264 553 LFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 553 l~~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 625 (945)
++.++.+... ...+.+||+.+.+....-...... ....+.+ ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 6666643221 356889998876544321111111 1222223 56666777654 5699999988765443222
Q ss_pred CCCCCCccEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 002264 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (945)
Q Consensus 626 ~~~~~~v~~v~~sp~g~~l~~~~~d-----g~i~iw~~~~~ 661 (945)
.... .-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 250 p~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 250 KHRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SSCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2111 1122222 266777777654 34667777654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.22 Score=52.40 Aligned_cols=135 Identities=18% Similarity=0.136 Sum_probs=90.2
Q ss_pred CCeEEEEEccCCCeeEEecCC----CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc------------eeeEe
Q 002264 517 DGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT------------IKRTY 580 (945)
Q Consensus 517 dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~------------~~~~~ 580 (945)
++.||.-++........+..+ -..+..+..+|+|++|+..+ +..|.+..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 467777777644444444443 22577899999999999986 6788888887332 11223
Q ss_pred ccc-----cCcceEEEEEcCC---CCEEEEEECCCcEEEEECCCCe--eEEEee-------cCCCCCCccEEEEcCCCCE
Q 002264 581 AGF-----RKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMDNVN--ILTSTD-------AEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 581 ~~~-----~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~--~~~~~~-------~~~~~~~v~~v~~sp~g~~ 643 (945)
.-. ....|..+.|+|- +..|++-..|+.|++||+.... +. .+. .......|.+++|.++|-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 221 1235888999995 4789999999999999998622 22 222 1222246889999998877
Q ss_pred EEEEE--CCCcEEEEE
Q 002264 644 LAVTT--ADNGFKILA 657 (945)
Q Consensus 644 l~~~~--~dg~i~iw~ 657 (945)
|...+ ..|.|+-.-
T Consensus 194 LYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEECTTSCEEEEES
T ss_pred EEEEecCCCCCEEEEC
Confidence 77755 667776543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.27 Score=50.35 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=112.1
Q ss_pred EecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcC--------------CeEEEEE
Q 002264 459 FAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--------------GKIKAWL 524 (945)
Q Consensus 459 ~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iwd 524 (945)
|+.++..+++.....++.|...+.+|.....+... .+.. +++ ++.+|+.+... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~~--i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAMY--INA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEEE--EEE--CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--ceee--EEE--cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 34567753443333456666666666555555432 1232 334 44566666543 3566667
Q ss_pred ccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE
Q 002264 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
++..+........ ...++++++.|+....+.++...|+..++...... .+..+.. ..++++++.|+-.+
T Consensus 95 ~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~-----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 95 RNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL-----FTCNTSDRYFYYNN 163 (302)
T ss_dssp TTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC-----CCSEEETTEEEEEC
T ss_pred CCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc-----eEeeEECCEEEEEe
Confidence 6655433322211 23677899998877522335677888888754433 3333221 34577788888776
Q ss_pred C-CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC--cEEEEECCCCccccccccCCccccccCcce
Q 002264 605 E-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN--GFKILANAIGLRSLRAVENPPFEALRTPIE 681 (945)
Q Consensus 605 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~ 681 (945)
. ...|+..++..+.....+. + .. ...++|++.+|+-...++ .|..-++.... ...+.. ..+
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l~~--~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt~-------~~~- 227 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALFYD--C---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN--PVVLTE-------ANI- 227 (302)
T ss_dssp TTTCCEEEEETTTTEEEEEEC--S---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC--CEECSC-------SCE-
T ss_pred CCCceEEEEECCCCCEEEEeC--C---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC--eEEEeC-------CCc-
Confidence 4 6789999988776554433 1 12 234669999988776543 45555554432 122211 112
Q ss_pred eeeeccccccee
Q 002264 682 SVALKVSASSAV 693 (945)
Q Consensus 682 ~v~~s~~g~~l~ 693 (945)
..|+|+|..|+
T Consensus 228 -~~~~~~g~~Iy 238 (302)
T 3s25_A 228 -EHYNVYGSLIF 238 (302)
T ss_dssp -EEEEEETTEEE
T ss_pred -ceEEECCCEEE
Confidence 34788888775
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0037 Score=48.45 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCCCCH--HHHHHHHhccCHHHHHHHHcC
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFNM--KYFEEKVQAGDWDEVEKYLSG 59 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~l~~ 59 (945)
++|+.+-|++||..+||.+++.+|.+|.++..+- ..-..-+++-.|..++.+-++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 5799999999999999999999999999988751 122344566667666665443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.091 Score=55.18 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=79.6
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccc-----ccc--ccccccccCcccccccccCCCccEEEEEEcC--
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPF--KIWDMAACSLPFQASIFKDVPISVSRVAWSP-- 416 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-- 416 (945)
.|..+..||+|++ ||.-+ +..|.|-.+..+..... ..+ +.|.+.. .-.....+|..+.|+|
T Consensus 67 ~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEecccc
Confidence 6888999999995 66654 67899999875432221 011 1111110 0111467899999999
Q ss_pred -CCCEEEEEECCCcEEEEEccCCccccc-c------eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQ-H------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 417 -~g~~las~~~dg~i~vwd~~~~~~~~~-~------~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
.|..|++-..|+.|++||+........ + ..+......|.+++|..++-.+++++.+..|.|+-.-
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 467899999999999999986332111 0 0111233578889998877765665555666665444
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.96 E-value=1.9 Score=44.75 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=64.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC----C
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----G 418 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~----g 418 (945)
.-...+.|+|.|||+ ++++--..|.|++++..+++......+ ..++.........|+|+|+ +
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 445889999999998 576654489999998655543110000 0122334567899999995 4
Q ss_pred CEEEEEE--CCCcEEEEEccCCc----cc---ccc-eeec-cccccEEEEEEecCCCeeEEEEEe
Q 002264 419 NYVGVAF--TKHLIQLYSYAGSN----DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCG 472 (945)
Q Consensus 419 ~~las~~--~dg~i~vwd~~~~~----~~---~~~-~~~~-~h~~~v~~l~~s~~~~~~~l~s~s 472 (945)
.+.++-+ .+..|.-|.+..+. .+ +.+ ..+. .....-..|+|.|||. +.++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 4434322 34556666665421 11 111 0121 1111345799999997 555543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=1.2 Score=45.84 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=111.3
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC----C-------
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT----K------- 427 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~----d------- 427 (945)
+++.|+ ..+.+||..+++-.. . .+..........+...+++.++.|+. +
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~-----------------~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-A-----------------SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-E-----------------ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEec-C-----------------CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 566666 578899988765321 0 01111112223333457888888873 1
Q ss_pred CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC--------CcEEEEe-CCCceEEEecCCCCCE-
Q 002264 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--------KLIKVWE-LSGRKLFNFEGHEAPV- 497 (945)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--------~~i~vwd-~~~~~~~~~~~~~~~v- 497 (945)
..+.+||..+++-.. ...+......-..+.+ ++. +++.|+.+ ..+.+|| .+++ -..+.....+.
T Consensus 67 ~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~ 140 (315)
T 4asc_A 67 AYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFK-WGESDPLPYVVY 140 (315)
T ss_dssp EEEEEEETTTTEEEE-CCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTE-EEECCCCSSCCB
T ss_pred cceEEecCCCCeEEE-CCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCc-EeECCCCCCccc
Confidence 127788887754211 1112111111112222 444 55666632 4588888 4443 22322111111
Q ss_pred -EEEEeeecCCccEEEEEEc-C-----CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCC-CceEE
Q 002264 498 -YSICPHHKENIQFIFSTAI-D-----GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDG-DSFLV 567 (945)
Q Consensus 498 -~~~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~-~~~i~ 567 (945)
.+++. . ++.+++.|+. + ..+.+||..+..-...-..+ ......+. -+++.++.++.+..+ ...+.
T Consensus 141 ~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 141 GHTVLS-H--MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp SCEEEE-E--TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEE
T ss_pred ceeEEE-E--CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEE
Confidence 11121 1 4467777776 2 35788887765322211111 11112222 256677777652211 23688
Q ss_pred EEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC--------------CcEEEEECCCCeeEEE
Q 002264 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED--------------SQIKFWDMDNVNILTS 622 (945)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 622 (945)
+||+.+.+....-..........++. -++..++.|+.+ ..+.+||..+.+-...
T Consensus 216 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 216 VYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 89998876544322111111112222 245667777753 2377888887765444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.4 Score=58.35 Aligned_cols=240 Identities=13% Similarity=0.131 Sum_probs=137.6
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg 428 (945)
+...+|..+ ++|.-. ..++.|+|+.+...+.... ....|.-=.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~-~l~lVT-~~ 125 (1630)
T 1xi4_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN 125 (1630)
T ss_pred hhccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCC-eeEEEc-CC
Confidence 344567776 677654 6899999998877664311 13456666775443 444443 34
Q ss_pred cEEEEEccCCcccccceeeccc----cccEEEEEEecCCCeeEEEEEe------CCCcEEEEeCCCceEEEecCCCCCEE
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~v~ 498 (945)
.|.-|++.+...... .+..| ...|..-.-+++.+. ++++|= -.|.+.+|....+..+.+.||.+...
T Consensus 126 aVyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (1630)
T ss_pred eEEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccccchhhhHhHhhhh
Confidence 699999975432221 33334 456777888888885 333332 34788899966666666777766554
Q ss_pred EEEeeecCCc-cEEEEEEc---CCeEEEEEccCC---CeeE-----EecC----CCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 499 SICPHHKENI-QFIFSTAI---DGKIKAWLYDTM---GSRV-----DYDA----PGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 499 ~~~~~~~~~~-~~l~s~~~---dg~i~iwd~~~~---~~~~-----~~~~----~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.+.....+.. .++..+.. .+.+++-++... ...+ .+.. ......++..++....+...+.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk---- 278 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----
Confidence 4433211111 22222222 268888887543 1111 1111 1223456777777777776664
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeE
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (945)
-|.++++|+.++.++..-+-... .+...+......-++.....|.|.--.++....+
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred CceEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 88999999999988765443333 3443333433344555556666665555544433
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.74 E-value=1 Score=46.56 Aligned_cols=197 Identities=9% Similarity=0.032 Sum_probs=91.4
Q ss_pred EcCCCCEEEEEEC----CC-------cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-------C
Q 002264 414 WSPDGNYVGVAFT----KH-------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-------K 475 (945)
Q Consensus 414 ~s~~g~~las~~~----dg-------~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-------~ 475 (945)
...++..++.|+. ++ .+.+||..+++-.. ...+.........+.+ ++. +++.|+.+ .
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~ 127 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASLD 127 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccccceEEE--CCE--EEEEcCccCCCCcccc
Confidence 3457888888873 12 17778877654221 1112211111122222 454 55666643 2
Q ss_pred cEEEEe-CCCceEEEecCCCCCEE--EEEeeecCCccEEEEEEcC------CeEEEEEccCCCeeEEecCCC--CeEEEE
Q 002264 476 LIKVWE-LSGRKLFNFEGHEAPVY--SICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPG--HWCTTM 544 (945)
Q Consensus 476 ~i~vwd-~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~--~~i~~~ 544 (945)
.+.+|| .+++ -..+.....+.. +++. . ++.+++.|+.+ ..+.+||+.+..-...-..+. .....+
T Consensus 128 ~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 203 (318)
T 2woz_A 128 SVLCYDPVAAK-WSEVKNLPIKVYGHNVIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA 203 (318)
T ss_dssp EEEEEETTTTE-EEEECCCSSCEESCEEEE-E--TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred eEEEEeCCCCC-EeECCCCCCcccccEEEE-E--CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE
Confidence 477788 4443 223222111111 1111 1 45677777642 358888887654332211111 111222
Q ss_pred EEcCCCCEEEEEeecCCC-CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC--------------CcE
Q 002264 545 LYSADGSRLFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED--------------SQI 609 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~~d~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------g~i 609 (945)
. -+++.++.++.+.++ ...+.+||+.+.+....-.......-..++. .++..++.|+.+ ..+
T Consensus 204 ~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v 280 (318)
T 2woz_A 204 I--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDI 280 (318)
T ss_dssp E--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCE
T ss_pred E--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeE
Confidence 2 256666676653211 2457789988765443221111101111222 245666666643 347
Q ss_pred EEEECCCCeeEEE
Q 002264 610 KFWDMDNVNILTS 622 (945)
Q Consensus 610 ~iwd~~~~~~~~~ 622 (945)
.+||..+.+-...
T Consensus 281 ~~yd~~~~~W~~~ 293 (318)
T 2woz_A 281 WKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCEehhh
Confidence 7777777655443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.65 E-value=1.1 Score=46.05 Aligned_cols=193 Identities=8% Similarity=-0.004 Sum_probs=93.3
Q ss_pred CCCEEEEEEC----C-----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC-----CcEEEEe-
Q 002264 417 DGNYVGVAFT----K-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE- 481 (945)
Q Consensus 417 ~g~~las~~~----d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d-----~~i~vwd- 481 (945)
++++++.|+. + ..+.+||..+.+-.. ...+.........+.+ +++ +++.|+.+ ..+.+||
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP-CAPMSVPRNRIGVGVI--DGH--IYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE-CCCCSSCCBTCEEEEE--TTE--EEEECCEETTEECCCEEEEET
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE-CCCCCcCccccEEEEE--CCE--EEEEcCCCCCcccccEEEECC
Confidence 6677777765 2 358889987754221 1112211122222222 555 56666543 3578888
Q ss_pred CCCceEEEecCCCCCE--EEEEeeecCCccEEEEEEcC-----CeEEEEEccCCCeeEEec--CCCCeEEEEEEcCCCCE
Q 002264 482 LSGRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSR 552 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~ 552 (945)
.+++ -..+.....+. .+++. . ++.+++.|+.+ ..+.+||+.+..-...-. ........+.+ +++.
T Consensus 145 ~~~~-W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 218 (308)
T 1zgk_A 145 ERDE-WHLVAPMLTRRIGVGVAV-L--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCI 218 (308)
T ss_dssp TTTE-EEECCCCSSCCBSCEEEE-E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCe-EeECCCCCccccceEEEE-E--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEE
Confidence 4443 22322111111 11221 1 44677777765 357888876653322111 11111222222 5666
Q ss_pred EEEEeecCC-CCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeeEE
Q 002264 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILT 621 (945)
Q Consensus 553 l~~~~~~~d-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 621 (945)
++.++.+.. ....+.+||+.+.+....-..........++. -++..++.|+.+ ..+.+||..+.+-..
T Consensus 219 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 219 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 666654211 13568999998876443221111111112222 245666777643 357888888766443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.32 Score=51.44 Aligned_cols=141 Identities=11% Similarity=0.027 Sum_probs=63.8
Q ss_pred CeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCC--CceEEEEeC--CCCceeeE--eccccCcceE
Q 002264 518 GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNE--SEGTIKRT--YAGFRKKSNG 589 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~--~~~i~iwd~--~~~~~~~~--~~~~~~~~~~ 589 (945)
..+.+||..+..-...-..+ ...-.+++. -+++.++.++.+..+ ...+..||+ .+.+.... +..... ...
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-ccc
Confidence 46888888765433322221 111022222 255666666542211 345777876 44433221 111111 111
Q ss_pred EEEEcCCCCEEEEEECC----------------------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE
Q 002264 590 VVQFDTTQNHFLAVGED----------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (945)
Q Consensus 590 ~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~ 647 (945)
..+...++..++.|+.+ ..+.+||+.+.+-...-..... .....+...++++++.|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEe
Confidence 11222345666666632 2578899887654433222221 22223333477888888
Q ss_pred ECCC------cEEEEECCCCc
Q 002264 648 TADN------GFKILANAIGL 662 (945)
Q Consensus 648 ~~dg------~i~iw~~~~~~ 662 (945)
+.++ .|.++++++++
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCS
T ss_pred eeCCCCCEeeeEEEEEEcCcE
Confidence 8653 35556776663
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.36 E-value=2.5 Score=46.02 Aligned_cols=280 Identities=14% Similarity=0.104 Sum_probs=143.3
Q ss_pred CCCeEEEEEeCcCcEEEEEcCCCCccccccc------ccccccccCcccccccccCCCccEE--EEEEc---CCCCEEEE
Q 002264 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQASIFKDVPISVS--RVAWS---PDGNYVGV 423 (945)
Q Consensus 355 ~g~~llasgs~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~V~--~i~~s---~~g~~las 423 (945)
|.-|.+.||+..|.|+|+-+.+++.+..-++ .-|-....+......--.-..+... .+++. .||+||..
T Consensus 68 Deyy~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfi 147 (638)
T 3sbq_A 68 DDYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFI 147 (638)
T ss_dssp CSEEEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEE
T ss_pred ccEEEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEE
Confidence 3346788999999999999999988754221 2222221111111000000111222 23332 26888888
Q ss_pred EEC-CCcEEEEEccCCcccccceeeccccccEEEEEEe--cCCCeeEEEEEeC-------CCcE---------EEEe---
Q 002264 424 AFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCGD-------DKLI---------KVWE--- 481 (945)
Q Consensus 424 ~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~~~l~s~s~-------d~~i---------~vwd--- 481 (945)
-.. +..|-..+++.-++-+.+ .+ .....+..++|- |+.. +++.+++ ||.. .+|.
T Consensus 148 Ndkan~RvAri~l~~~~~d~Ii-~i-Pn~~~~Hg~~~~~~p~T~--yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 148 NDKANSRVARIRLDIMKCDKMI-TV-PNVQAIHGLRLQKVPHTK--YVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp EETTTTEEEEEETTTTEEEEEE-EC-TTCSCEEEEEECCSSBCC--EEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred ecCCCcceEEEECCcEeeceeE-eC-CCCcCcccccccccCCcc--EEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 764 556777777765543321 22 244567778876 5666 5665553 2221 1111
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC---------------eEEEEEc--------------------
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---------------KIKAWLY-------------------- 525 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---------------~i~iwd~-------------------- 525 (945)
.+.+....+.- .+..-.+.. +.++.+.++.+.+. .+.++++
T Consensus 224 ~~tm~v~~Qv~v-~gnld~~~~--~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 224 AETMEMAFQVIV-DGNLDNTDA--DYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp TTTCSEEEEEEE-SSCCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred CCccEEEEEEEc-CCChhhcCC--CCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 11111111100 001111111 22345555554321 2334433
Q ss_pred -----cC----CCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC------ce-------eeEeccc
Q 002264 526 -----DT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TI-------KRTYAGF 583 (945)
Q Consensus 526 -----~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~------~~-------~~~~~~~ 583 (945)
+. ......+.........+.++|||+++++++. .+.++.++|.+.. +. .....
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK---LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK---LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT---TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred eEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC---CCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 22 1111111111123456789999999999874 5788999998742 11 11111
Q ss_pred cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC----------eeEEEeecCCCCCCccEEE------EcCCCCEEEEE
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----------NILTSTDAEGGLPNLPRLR------FSKEGNLLAVT 647 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~v~------~sp~g~~l~~~ 647 (945)
-+......+|+++|+...+.--|..|.-|++... ..+..+..+-. +-.+. -.|||++|++.
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq---pGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ---PGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC---EEEEEETTTTSTTCCSCEEEEE
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC---CcccccCCCccCCCCccEEEEe
Confidence 1223455889999944444458999999998753 35555655432 22222 25789999987
Q ss_pred EC
Q 002264 648 TA 649 (945)
Q Consensus 648 ~~ 649 (945)
..
T Consensus 453 nK 454 (638)
T 3sbq_A 453 SK 454 (638)
T ss_dssp ES
T ss_pred cc
Confidence 54
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.83 Score=43.25 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=61.5
Q ss_pred eeEEeecCCCceEEecCCCeEEEEeccCceE-------EEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccce
Q 002264 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKV-------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (945)
Q Consensus 834 i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~-------~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~ 906 (945)
..++.|.++|.+.++ +||.|.=++-.+... ...-.+--..+..|.|.| +|.+-|+. |+.++-+...++.
T Consensus 90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence 478999999999888 789887776533111 011111124589999999 88777666 7776544433221
Q ss_pred ------EEEEe-cCCCcceeEEEecCCcceeeeecCCceE
Q 002264 907 ------VKSKL-KGHQKRITGLAFSTSLNILVSSGADAQV 939 (945)
Q Consensus 907 ------~~~~l-~~h~~~V~~l~~s~dg~~l~s~~~Dg~i 939 (945)
....+ .......+.+.|+++|...+.. ++.+
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 11111 2334455668899999877765 6643
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.54 E-value=6.5 Score=42.68 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=60.7
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCccccccccc--CCCccEEEEEEcCC---C
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK--DVPISVSRVAWSPD---G 418 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~i~~s~~---g 418 (945)
-...+.|+|.|+|+ ++++-...+.|++++..+++... +. .+ . ..+. ........|+|+|+ +
T Consensus 26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~---~~--~~-------~-~~~~~~~g~~Gllgia~~Pdf~~~ 91 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKT---VF--QV-------P-EIVNDADGQNGLLGFAFHPDFKNN 91 (454)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE---EE--EC-------T-TCCCCTTSSCSEEEEEECTTTTTS
T ss_pred CCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeE---Ee--cC-------C-ccccccCCCCceeEEEECCCcCcC
Confidence 44789999999998 56664333468888765544321 00 00 0 0111 13467889999995 5
Q ss_pred CEEEEEE-C------------CCcEEEEEccCCc-cc---ccce-eec-cccccEEEEEEecCCCeeEEEEE
Q 002264 419 NYVGVAF-T------------KHLIQLYSYAGSN-DL---RQHS-QID-AHVGAVNDLAFAYPNKLLCVVTC 471 (945)
Q Consensus 419 ~~las~~-~------------dg~i~vwd~~~~~-~~---~~~~-~~~-~h~~~v~~l~~s~~~~~~~l~s~ 471 (945)
.+|..+. . ...|.-|+...+. .+ +.+. .+. ........|+|.|||.. ++.+|
T Consensus 92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L-yv~~G 162 (454)
T 1cru_A 92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI-YYTIG 162 (454)
T ss_dssp CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE-EEEEC
T ss_pred CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE-EEEEC
Confidence 5444433 2 1346666654321 11 1111 111 11224789999999982 44444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.24 E-value=3.3 Score=45.04 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=22.2
Q ss_pred CccEEEEcCCCC-EEEEEECCCcEEEEECC
Q 002264 631 NLPRLRFSKEGN-LLAVTTADNGFKILANA 659 (945)
Q Consensus 631 ~v~~v~~sp~g~-~l~~~~~dg~i~iw~~~ 659 (945)
.-..++|.|||. .|+++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 347899999996 45556778999999754
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.23 E-value=1.5 Score=46.01 Aligned_cols=60 Identities=7% Similarity=-0.024 Sum_probs=29.8
Q ss_pred eEEEEeCCCCceeeE--eccccCcceEEEEEcCCCCEEEEEECCC------cEEEEECCCCeeEEEeecCC
Q 002264 565 FLVEWNESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDS------QIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~ 627 (945)
.+.+||+.+.+.... +..... ... ++..++..++.||.++ .|.++++++++.+.....+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~-~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRA-YGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCB-SSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred eEEEEecCCCceeeCCCCCCCcc-cce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 577899887654332 222211 112 2334567788888542 36667888887776655443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.88 Score=46.94 Aligned_cols=191 Identities=7% Similarity=-0.047 Sum_probs=96.9
Q ss_pred CEEEEEECCCcEEEEEccCCcccccceeeccc-cccEEEEEE--ecCCCeeEEEEE-eCCCcEEEEe-CCCceEEEecC-
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAF--AYPNKLLCVVTC-GDDKLIKVWE-LSGRKLFNFEG- 492 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~--s~~~~~~~l~s~-s~d~~i~vwd-~~~~~~~~~~~- 492 (945)
..++.++.||.|.-+|.++|+..-. +... ..++....- .+.+.. .++.. +.||.+..++ .+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~---~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS---IEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE---ECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE---ecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 4677888999999999888875542 2111 112211100 011222 33333 5799999999 77754433321
Q ss_pred ---CCCCEEEEEeeecC-------CccEEEEEEcCCeEEEEEccCCCeeEEecCCCC--e-----EEEEEEc-----CCC
Q 002264 493 ---HEAPVYSICPHHKE-------NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--W-----CTTMLYS-----ADG 550 (945)
Q Consensus 493 ---~~~~v~~~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~-----i~~~~~s-----~~~ 550 (945)
...++.. .-.|-- .+..+++|+.+|.+...|+.+++.+..+..... . ..|.... ..+
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 1222221 000000 335789999999999999999999988765421 0 1111111 113
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCceeeEec--cccCcceE-----EEEEcCCCCEEEEEECCCcEEEEECCCCeeEE
Q 002264 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYA--GFRKKSNG-----VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 551 ~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (945)
..++.+.. +..+.+.+ ++|+ +-.+. ......+. ....+.++.+ ++++.||.|+.+|..+|..+.
T Consensus 166 ~~v~ig~~----~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKT----IFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEE----EEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecc----eEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 44555443 44444444 3332 11110 00000000 0001123444 557889999999988888765
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.23 Score=46.97 Aligned_cols=100 Identities=14% Similarity=0.041 Sum_probs=64.7
Q ss_pred ceeEEeecCCCceEEecCCCeEEEEeccCceE------EEEec--CCCCCeeEEEeecCCCceEEEeecCceEEEEeccc
Q 002264 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV------MTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (945)
Q Consensus 833 ~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~------~~~~~--~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~ 904 (945)
.+..++|+|+|.+.|+ ++|++.-.+..+... -..+- +.. .-.++.|.| ++.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 5779999999998888 878776666544111 11110 111 147899999 8877776 579998887643
Q ss_pred ceE-------EEEecCCCcceeEEEecCCcceeeeecCCceE
Q 002264 905 DEV-------KSKLKGHQKRITGLAFSTSLNILVSSGADAQV 939 (945)
Q Consensus 905 ~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i 939 (945)
... ...-.+--..+..|.|.|+|.+.+.. |+.+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 210 11112122568999999999887766 7764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=93.65 E-value=6.9 Score=39.70 Aligned_cols=204 Identities=9% Similarity=0.110 Sum_probs=112.6
Q ss_pred EEEcCCCCEEEEEECC--------------CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC--
Q 002264 412 VAWSPDGNYVGVAFTK--------------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-- 475 (945)
Q Consensus 412 i~~s~~g~~las~~~d--------------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-- 475 (945)
--++++|++|.-+... ..|+..++++++... +... . +..|+++++.++++..+.++
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD--P--CIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS--C--EEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC--C--ccEEEEeCCEEEEEeecCCCCc
Confidence 3457889988877543 357777777664322 2211 1 23678899853333322344
Q ss_pred cEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEc-CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 476 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
.|..-+..|.....+..+.. ..+++. ++.|+-.+. ...|..-+++.......+. .. .. ..+.|++.+|+
T Consensus 130 ~Iy~~~~dGs~~~~lt~~~~----~~~~~~--g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~-~~-~~~~P~g~~iy 199 (302)
T 3s25_A 130 SLYRIRIDGEEKKKIKNHYL----FTCNTS--DRYFYYNNPKNGQLYRYDTASQSEALFYD--CN-CY-KPVVLDDTNVY 199 (302)
T ss_dssp EEEEEETTSCCCEEEESSCC----CCSEEE--TTEEEEECTTTCCEEEEETTTTEEEEEEC--SC-EE-EEEEEETTEEE
T ss_pred eEEEEECCCCCeEEEeCCCc----eEeeEE--CCEEEEEeCCCceEEEEECCCCCEEEEeC--CC-cc-ceeeecCCEEE
Confidence 44444567766666665543 345554 355665554 5677777776554443332 21 22 23569999988
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
..... ....|..-++..... ..+... .+ ..++|++.+|+.+. ..+.|..-+++.......... .+
T Consensus 200 ~t~~~--~~~~I~~~~ldG~~~-~~Lt~~---~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-----~~ 266 (302)
T 3s25_A 200 YMDVN--RDNAIVHVNINNPNP-VVLTEA---NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG-----EF 266 (302)
T ss_dssp EEEGG--GTTEEEEECSSSCCC-EECSCS---CE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-----CE
T ss_pred EEEcC--CCcEEEEEECCCCCe-EEEeCC---Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-----cc
Confidence 76542 125677777765543 333221 22 34788888888764 345677777765443333221 12
Q ss_pred cEEEEcCCCCEEEEEE
Q 002264 633 PRLRFSKEGNLLAVTT 648 (945)
Q Consensus 633 ~~v~~sp~g~~l~~~~ 648 (945)
. .+++.+.+|+-..
T Consensus 267 ~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 267 C--NINVTSQYVYFTD 280 (302)
T ss_dssp E--EEEECSSEEEEEE
T ss_pred c--eEEEeCCEEEEEE
Confidence 2 3444566666554
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.15 Score=52.61 Aligned_cols=190 Identities=10% Similarity=0.065 Sum_probs=102.2
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCC-CCCEEEEEeeec-CCccEEEEE-EcCCeEEEEEccCCCeeEEecCC----C
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHK-ENIQFIFST-AIDGKIKAWLYDTMGSRVDYDAP----G 538 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 538 (945)
.++.++.||.|.-.| .+|+.+.++... ..++....-... .++..++.. +.||.+..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 678889999999999 899998888654 122222210011 122333333 58999999988776544433221 1
Q ss_pred CeEEE---EEE-----cCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcc------eEEEEEc-----CCCCE
Q 002264 539 HWCTT---MLY-----SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS------NGVVQFD-----TTQNH 599 (945)
Q Consensus 539 ~~i~~---~~~-----s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~ 599 (945)
.++.. ..+ +..+..+++++. ++.+.-.|+.+|+.+..+....... ..|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11211 000 013456677775 8899999999999998887532111 0011110 12356
Q ss_pred EEEEECCCcEEEEECCCCeeEEEee-----cCCCCCCc-cEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002264 600 FLAVGEDSQIKFWDMDNVNILTSTD-----AEGGLPNL-PRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v-~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~ 663 (945)
++.+..+..+.+.+ ++|+ +..+. .......+ ..-..+.|+.+ +.++.||.|.-+|..++..
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 77777666666655 3343 21111 00000000 00011234666 4578899999999888743
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=2.3 Score=49.43 Aligned_cols=199 Identities=6% Similarity=-0.016 Sum_probs=99.4
Q ss_pred CCCCEEEEEECC----CcEEEEEccCCccccccee-----eccccccEEEEEEec-CCCeeEEEEEeCC------CcEEE
Q 002264 416 PDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQ-----IDAHVGAVNDLAFAY-PNKLLCVVTCGDD------KLIKV 479 (945)
Q Consensus 416 ~~g~~las~~~d----g~i~vwd~~~~~~~~~~~~-----~~~h~~~v~~l~~s~-~~~~~~l~s~s~d------~~i~v 479 (945)
.++..++.||.+ ..+.+||..+++-...... +......- +++..+ ++. +++.||.+ ..+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-s~~~~~~~~~--lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-TFTTISRNNQ--LLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-EEEEETTTTE--EEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-EEEEEccCCE--EEEEcCCCCCCCccccEEE
Confidence 467777777753 3588899887643221101 11111112 233333 565 66666643 35778
Q ss_pred Ee-CCCceEEEecCCCCCE--EEEEeeecCCccEEEEEEcCC--eEEEEEccCCCeeEEe-----cCCCCeEEEEEEcCC
Q 002264 480 WE-LSGRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRVDY-----DAPGHWCTTMLYSAD 549 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~~ 549 (945)
|| .+++ -..+.....+. .+++. -.++.+++.||.++ .+.+||..+..-...- ........++.+..+
T Consensus 473 yd~~t~~-W~~~~~~p~~R~~h~~~~--~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTRE-WSMIKSLSHTRFRHSACS--LPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EETTTTE-EEECCCCSBCCBSCEEEE--CTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EeCCCCc-EEECCCCCCCcccceEEE--EcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 88 4432 22222111111 11121 11557888887655 6888888765422211 111112233555555
Q ss_pred -CCEEEEEeecCCC---CceEEEEeCCCCc------eeeEecc-ccCcceEEEEEcCCCCEEEEEEC--------CCcEE
Q 002264 550 -GSRLFSCGTSKDG---DSFLVEWNESEGT------IKRTYAG-FRKKSNGVVQFDTTQNHFLAVGE--------DSQIK 610 (945)
Q Consensus 550 -~~~l~~~~~~~d~---~~~i~iwd~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~ 610 (945)
++.++.+|...++ ...+.+||+.+.. ....... .....-..++...++..++.||. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5666666643222 3568999998876 2222111 11111122333333667777763 34699
Q ss_pred EEECCCCeeE
Q 002264 611 FWDMDNVNIL 620 (945)
Q Consensus 611 iwd~~~~~~~ 620 (945)
+||..+..-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=90.80 E-value=21 Score=38.67 Aligned_cols=109 Identities=12% Similarity=0.152 Sum_probs=58.8
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE--EecC------CCCeEEEEEEcCC---CCEEEEEeecC---
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDA------PGHWCTTMLYSAD---GSRLFSCGTSK--- 560 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~------~~~~i~~~~~s~~---~~~l~~~~~~~--- 560 (945)
.....++|.+ +|+++++-...+.|++++...+.... .+.. .......|+|+|+ +..|+++....
T Consensus 27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3456888866 55655554333478888754443322 1211 1345779999996 56665554310
Q ss_pred --CC----CceEEEEeCCCC--c-----ee-eEeccccCcceEEEEEcCCCCEEEEEEC
Q 002264 561 --DG----DSFLVEWNESEG--T-----IK-RTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 561 --d~----~~~i~iwd~~~~--~-----~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (945)
+. ...|..++.... . .+ ..+..........++|.|+|.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 00 235666655321 1 11 1122211224677999999987777553
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=89.63 E-value=34 Score=39.38 Aligned_cols=251 Identities=8% Similarity=0.041 Sum_probs=122.5
Q ss_pred EEEEE-EeCCCCeEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 347 VISMD-FHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 347 V~~v~-fsp~g~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
...+. ++|+|++++++=|..| .|+++|+.+++.+.. .+. ...+... + -......++|-.++..+
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~-------~--~~~~~~~~~W~d~~~~~ 199 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK-------L--LEGKFTYPTWINKDTII 199 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC-------B--CCEETCCEEEEETTEEE
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc-------c--cccccceeeEECCCEEE
Confidence 34444 8999997666544433 799999999887642 111 0000000 0 00012334776333333
Q ss_pred EEE----------ECCCcEEEEEccCCcccccceeecccccc-EEEEEEecCCCe---eEEEEEeCC---CcEEEEeCC-
Q 002264 422 GVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAYPNKL---LCVVTCGDD---KLIKVWELS- 483 (945)
Q Consensus 422 as~----------~~dg~i~vwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~---~~l~s~s~d---~~i~vwd~~- 483 (945)
++. +....|+.|.+-+...-. ...+.+.... -.....++++.. ..+++.+.+ ..+.+.+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 200 FNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp ECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred EEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 321 112458888775542111 1123333332 234555667663 135554423 344555533
Q ss_pred --CceEEEecCCCCCEEEEEeeecCCccEEEEE----------EcCCeEEEEEccCCC-------eeEE-ec-CCCCeEE
Q 002264 484 --GRKLFNFEGHEAPVYSICPHHKENIQFIFST----------AIDGKIKAWLYDTMG-------SRVD-YD-APGHWCT 542 (945)
Q Consensus 484 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~-~~-~~~~~i~ 542 (945)
++ +..+....... +..+. ++.+++.. ...+.|...|+.... .... +. .....+.
T Consensus 279 ~~~~-~~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 279 KNLK-LQKINMPSDAT--LQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSCE-EEECCSCTTCE--EEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCc-ceEeecCCcce--EeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 33 33333222211 11222 33444432 246778889887632 1222 22 2344678
Q ss_pred EEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc-eeeE-eccccCcceEEEEEcCCCCEE-EEEE---CCCcEEEEECCC
Q 002264 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRT-YAGFRKKSNGVVQFDTTQNHF-LAVG---EDSQIKFWDMDN 616 (945)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l-~~~~---~dg~i~iwd~~~ 616 (945)
.+.+..+ ..+++... ++...+.++|+.++. .... +.......+.....++++..+ ++.+ .-+.++.+|+.
T Consensus 354 ~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~- 429 (711)
T 4hvt_A 354 FISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT- 429 (711)
T ss_dssp EEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-
T ss_pred EEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-
Confidence 8888876 34444432 345578888887664 2233 322212245556666766544 4433 34678888876
Q ss_pred Ce
Q 002264 617 VN 618 (945)
Q Consensus 617 ~~ 618 (945)
++
T Consensus 430 ~~ 431 (711)
T 4hvt_A 430 HE 431 (711)
T ss_dssp SC
T ss_pred Cc
Confidence 44
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=88.84 E-value=29 Score=37.53 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=35.0
Q ss_pred cEEEEEEcCCCC-EEEEEECCCcEEEEEccCCcccccceeec---------cccccEEEEEEecC
Q 002264 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYP 462 (945)
Q Consensus 408 ~V~~i~~s~~g~-~las~~~dg~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~~ 462 (945)
....|+|.|||. .|+++...|.|++++.+.......+..+. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 467899999996 45556788999999754321111111111 12457889999996
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=88.48 E-value=21 Score=35.57 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=110.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~ 485 (945)
.|..|+....- .++. . ||.|..|-......+.. -......|..++..... .++. . ||.|..|- ..++
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~---p~~~~~~i~~ia~G~~h---s~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM---PAATQSGVDAIAAGNYH---SLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC---CGGGGSCCCEEEECSSE---EEEE-E-TTEEEEEECCTTST
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC---CccCCCCEEEEEeCCCE---EEEE-E-CCEEEEeeCCCCCC
Confidence 56677665432 2333 4 89999997654333321 11123357777765433 2333 4 89999998 3343
Q ss_pred eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCce
Q 002264 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (945)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~ 565 (945)
.-.. ..-...|..++... ...+.-. ||.|..|-.......-........|..++...+.. +... ++.
T Consensus 94 lg~P-~~~~~~v~~ia~G~----~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~--~~l~-----~G~ 160 (282)
T 3qhy_B 94 TTVP-AEARSGVDAIAAGA----WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA--LAVK-----NGG 160 (282)
T ss_dssp TCCC-GGGSSSEEEEEEET----TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE--EEEE-----TTE
T ss_pred CCCC-cccCCCeEEEECcC----CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE--EEEE-----CCE
Confidence 2111 11134677776532 2344445 99999996554322211111223466665443322 2221 567
Q ss_pred EEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE
Q 002264 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (945)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~ 645 (945)
++.|-......+. .+......+..++.... +.++- .||.|+.|-....-.+. +... ....|..++...+. .++
T Consensus 161 v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg-~p~~-~~~~v~~i~~G~~h-~~a 233 (282)
T 3qhy_B 161 VIAWGDNYFGQTT-VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTT-VPTE-ALSGVSAIASGEWY-SLA 233 (282)
T ss_dssp EEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTC-CCGG-GGSSCCEEEECSSC-EEE
T ss_pred EEEecCCCCCCCC-CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCC-CCcc-cCCCceEEEcCCCE-EEE
Confidence 8888654321111 11111124555555433 33344 69999999765432111 1111 11256777765443 333
Q ss_pred EEECCCcEEEEECCC
Q 002264 646 VTTADNGFKILANAI 660 (945)
Q Consensus 646 ~~~~dg~i~iw~~~~ 660 (945)
.. ||.|..|-...
T Consensus 234 l~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 234 LK--NGKVIAWGSSR 246 (282)
T ss_dssp EE--TTEEEEESTTC
T ss_pred EE--CCEEEEecCCC
Confidence 33 88999996543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=87.52 E-value=25 Score=35.14 Aligned_cols=221 Identities=11% Similarity=0.092 Sum_probs=110.8
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
.|..++.... +.++. . ||.|..|-.....++-. +. .....|..|+...+-. ++. .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~-------------p~------~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM-------------PA------ATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC-------------CG------GGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC-------------Cc------cCCCCEEEEEeCCCEE-EEE-E
Confidence 4555554433 23444 4 89999997655433310 00 0112566676654333 333 4
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe--CCCceEEEecCCCCCEEEEEee
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (945)
||.|..|-......+.... .-...|..++...+. .+.-. ||.|..|- ..++.-.. ......|..++..
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVP-AEAQSGVTALDGG 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEEC
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCC-ccCCCCeEEEEcc
Confidence 8999999765433222111 113468888776543 23334 89999998 33433111 1123457776642
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~ 583 (945)
. ...+ .-. ||.|..|-.......-........|..++...+...++ . ++.++.|-......+-. ...
T Consensus 150 ~---~~~~-~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~ 216 (282)
T 3qhy_B 150 V---YTAL-AVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE 216 (282)
T ss_dssp S---SEEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG
T ss_pred c---CEEE-EEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc
Confidence 2 1233 334 79999996554322211111123566666544333222 2 77888887543211110 101
Q ss_pred cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (945)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (945)
....+..++.... +.++-. ||.|+.|-....
T Consensus 217 ~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 217 ALSGVSAIASGEW--YSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp GGSSCCEEEECSS--CEEEEE-TTEEEEESTTCC
T ss_pred cCCCceEEEcCCC--EEEEEE-CCEEEEecCCCC
Confidence 1113555555443 333334 999999976553
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=87.18 E-value=48 Score=38.14 Aligned_cols=244 Identities=8% Similarity=0.006 Sum_probs=120.6
Q ss_pred cEEEEE-EcCCCCEEEEE-ECC----CcEEEEEccCCcccccceeec-cccc------cEEEEEEecCCCeeEEEEEe--
Q 002264 408 SVSRVA-WSPDGNYVGVA-FTK----HLIQLYSYAGSNDLRQHSQID-AHVG------AVNDLAFAYPNKLLCVVTCG-- 472 (945)
Q Consensus 408 ~V~~i~-~s~~g~~las~-~~d----g~i~vwd~~~~~~~~~~~~~~-~h~~------~v~~l~~s~~~~~~~l~s~s-- 472 (945)
....+. ++|++++++.+ +.. ..++++|+.+++.+..- +. .-+. ....++|..++. ++++..
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~ 205 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLH 205 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCS
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCC
Confidence 344455 88999988765 222 35999999998765421 11 0000 123458874443 444321
Q ss_pred --------CCCcEEEEe-CCC--ceEEEecCCCCCE-EEEEeeecCCcc---EEEEEEcC---CeEEEEEccCCC-eeEE
Q 002264 473 --------DDKLIKVWE-LSG--RKLFNFEGHEAPV-YSICPHHKENIQ---FIFSTAID---GKIKAWLYDTMG-SRVD 533 (945)
Q Consensus 473 --------~d~~i~vwd-~~~--~~~~~~~~~~~~v-~~~~~~~~~~~~---~l~s~~~d---g~i~iwd~~~~~-~~~~ 533 (945)
....|+.|. -+. +-...+.+....+ .+.....++... .+++.+.+ ..+.+.+.+... ....
T Consensus 206 ~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (711)
T 4hvt_A 206 KNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQK 285 (711)
T ss_dssp TTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEE
T ss_pred CCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceE
Confidence 124577776 222 2233444433333 222333332221 34444422 334555554322 2233
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeec------CCCCceEEEEeCCCCc-------eee-EeccccCcceEEEEEcCCCCE
Q 002264 534 YDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEGT-------IKR-TYAGFRKKSNGVVQFDTTQNH 599 (945)
Q Consensus 534 ~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~ 599 (945)
+..+.... +..+.++..++....+ .-..+.|...|+.++. ..+ .+.......+..+.+..+ ..
T Consensus 286 l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l 362 (711)
T 4hvt_A 286 INMPSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RV 362 (711)
T ss_dssp CCSCTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CE
T ss_pred eecCCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EE
Confidence 43333311 2334455555533211 0026678888887642 122 243333435677788765 56
Q ss_pred EEEEECCCc--EEEEECCCCe-eEEE-eecCCCCCCccEEEEcCCCC-EEEEEEC---CCcEEEEECC
Q 002264 600 FLAVGEDSQ--IKFWDMDNVN-ILTS-TDAEGGLPNLPRLRFSKEGN-LLAVTTA---DNGFKILANA 659 (945)
Q Consensus 600 l~~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~sp~g~-~l~~~~~---dg~i~iw~~~ 659 (945)
+++...++. |+++++.++. .... +.... ...+..+..++++. ++++.+. -+.+..+++.
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666666664 6777776664 2233 33332 12455666667665 4444443 3567777765
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=85.92 E-value=9.6 Score=44.11 Aligned_cols=113 Identities=9% Similarity=-0.061 Sum_probs=62.8
Q ss_pred CCCEEEEEeecCCC--CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCC--cEEEEECCCCeeEEEee
Q 002264 549 DGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTD 624 (945)
Q Consensus 549 ~~~~l~~~~~~~d~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 624 (945)
+++.++.+|.+... -..+.+||..+.+....-.......-.+++.-.++..++.||.++ .+.+||..+..-...-.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 67777777753322 246889999886544322111111122233324778888887544 79999998876543321
Q ss_pred ---cCCCCCCccEEEEcCC-CCEEEEEEC--C-----CcEEEEECCCC
Q 002264 625 ---AEGGLPNLPRLRFSKE-GNLLAVTTA--D-----NGFKILANAIG 661 (945)
Q Consensus 625 ---~~~~~~~v~~v~~sp~-g~~l~~~~~--d-----g~i~iw~~~~~ 661 (945)
.+.......++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1111112233555655 667777765 2 34777777665
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=83.32 E-value=48 Score=34.82 Aligned_cols=236 Identities=8% Similarity=0.003 Sum_probs=109.3
Q ss_pred CccEEEEEEcC--CCCEEEEEECCC----cEEEEEccCCccccccee---ecc--------ccccEEEEEEecC--CCee
Q 002264 406 PISVSRVAWSP--DGNYVGVAFTKH----LIQLYSYAGSNDLRQHSQ---IDA--------HVGAVNDLAFAYP--NKLL 466 (945)
Q Consensus 406 ~~~V~~i~~s~--~g~~las~~~dg----~i~vwd~~~~~~~~~~~~---~~~--------h~~~v~~l~~s~~--~~~~ 466 (945)
...|.+|++.| .+.+.+.+ ..| .|.. ..+.|+....... +.. +...|.++++.|. ..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~-s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 129 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFR-SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG-- 129 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEE-ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEE-eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--
Confidence 35799999999 45555444 444 3333 2244443332111 111 1135888999873 34
Q ss_pred EEEEEeCCCcEEEEeCCCceEEEecC-------------------CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccC
Q 002264 467 CVVTCGDDKLIKVWELSGRKLFNFEG-------------------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (945)
.+..++..+.|...+..|+.-..+.. ....+.+|.+.|...+ .++.+..++.|... ..
T Consensus 130 ~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 130 TWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFES--TD 206 (394)
T ss_dssp CEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEEE--SS
T ss_pred EEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEEE--CC
Confidence 34445445655555444443333321 1235778888764333 34445444444332 22
Q ss_pred CCeeEE-ecC--C-----------CCeEEEEEEcCC-CCEEEEEeecCCCCceEEEEeCCCCceeeEecc-ccC---cce
Q 002264 528 MGSRVD-YDA--P-----------GHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRK---KSN 588 (945)
Q Consensus 528 ~~~~~~-~~~--~-----------~~~i~~~~~s~~-~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~-~~~---~~~ 588 (945)
+..... +.. . ...+.++.+.|+ ...++++. .+.|+..+-. ++.-..+.. ... ..+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDRR-EGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEETT-TTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCCC-CCcceECCCCCCCCCccce
Confidence 222221 111 0 134889999886 35565554 3345544422 222222211 111 134
Q ss_pred EEEEEcCC-CCEEEEEEC-----------CCcEEEEECCC-CeeEEEeec--CCCC--C--CccEEEEcCC-CCEEEEEE
Q 002264 589 GVVQFDTT-QNHFLAVGE-----------DSQIKFWDMDN-VNILTSTDA--EGGL--P--NLPRLRFSKE-GNLLAVTT 648 (945)
Q Consensus 589 ~~~~~~~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~--~--~v~~v~~sp~-g~~l~~~~ 648 (945)
..+.++|. ...++++.. ++...+|...+ |+.-..+.. .... . ....++++|. ...|+.++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 56777763 345555542 33345555443 343333321 1100 0 1236888874 34566666
Q ss_pred CCCcEE
Q 002264 649 ADNGFK 654 (945)
Q Consensus 649 ~dg~i~ 654 (945)
.++.|.
T Consensus 361 ~~g~l~ 366 (394)
T 3b7f_A 361 TGGEIW 366 (394)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 555543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=80.27 E-value=62 Score=33.99 Aligned_cols=223 Identities=7% Similarity=-0.029 Sum_probs=100.5
Q ss_pred ccEEEEEEcC-C-CCEEEEEECCCcEEEEEccCCcccccceeec----------------cccccEEEEEEecCCCeeEE
Q 002264 407 ISVSRVAWSP-D-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID----------------AHVGAVNDLAFAYPNKLLCV 468 (945)
Q Consensus 407 ~~V~~i~~s~-~-g~~las~~~dg~i~vwd~~~~~~~~~~~~~~----------------~h~~~v~~l~~s~~~~~~~l 468 (945)
..|.++++.| + ...|..++..+.|...+ +.|+.......+. .....|.+|.+.|.... .+
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l 192 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HL 192 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EE
Confidence 3688999987 2 45555555555444332 3344333221110 01235889999884321 23
Q ss_pred EEEeCCCcEEEEeCCCceEEEecCC-------------CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-Ee
Q 002264 469 VTCGDDKLIKVWELSGRKLFNFEGH-------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DY 534 (945)
Q Consensus 469 ~s~s~d~~i~vwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~ 534 (945)
+.+..++.|...+..|+.-..+... ...+.++.+.+... ..++.+...+ |... ....... .+
T Consensus 193 ~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~-~~l~vg~~~g-l~~s--~D~G~tW~~~ 268 (394)
T 3b7f_A 193 YIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAP-DILYQQNHCG-IYRM--DRREGVWKRI 268 (394)
T ss_dssp EEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSST-TEEEEEETTE-EEEE--ETTTTEEECG
T ss_pred EEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCC-CEEEEEcCCe-EEEe--CCCCCcceEC
Confidence 3343344444444344433332210 12478888877532 4566666544 3333 2222222 11
Q ss_pred c--CCC---CeEEEEEEcC-CCCEEEEEeecCC-------CCceEEEEeCCC-CceeeEec-cccCc------ceEEEEE
Q 002264 535 D--APG---HWCTTMLYSA-DGSRLFSCGTSKD-------GDSFLVEWNESE-GTIKRTYA-GFRKK------SNGVVQF 593 (945)
Q Consensus 535 ~--~~~---~~i~~~~~s~-~~~~l~~~~~~~d-------~~~~i~iwd~~~-~~~~~~~~-~~~~~------~~~~~~~ 593 (945)
. ... ..+..+.++| +...+++++.+.+ .++...+|...+ ++.-..+. +.... ....+++
T Consensus 269 ~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~ 348 (394)
T 3b7f_A 269 GDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTA 348 (394)
T ss_dssp GGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEE
T ss_pred CCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEE
Confidence 1 122 3456788876 3344554432111 022233444333 22222221 11110 1134777
Q ss_pred cCC-CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 594 DTT-QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 594 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
+|. ...|++++.++.|+.- .+.++.-..+... ...+.+++|.
T Consensus 349 ~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~--lp~~~~v~~~ 391 (394)
T 3b7f_A 349 DAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASH--LPHIYAVQSA 391 (394)
T ss_dssp CCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECS--CSCEEEEEEE
T ss_pred CCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccC--CCCeeEEEEe
Confidence 774 3557777666665532 2334444444322 2256666653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 945 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.003 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 9e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.004 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.9 bits (203), Expect = 2e-17
Identities = 60/405 (14%), Positives = 118/405 (29%), Gaps = 82/405 (20%)
Query: 275 VPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLP 334
VP NQ + P P + D + + L+ + + Y+ + LP
Sbjct: 4 VPYNQRANHSKPIPPFL------LDLDSQSVPDALKKQTNDYYILYNPA---------LP 48
Query: 335 RTVAVSLHQ----GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
R + V LH+ S V + F + L N ++ ++ LV++
Sbjct: 49 REIDVELHKSLDHTSVVCCVKFSNDGE--YLATGCNKTTQVYRVSDG-SLVARLSDDSAA 105
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
S + + V +SPDG ++ LI+++ + +
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165
Query: 451 VGAVNDLA-------------------------------------FAYPNKLLCVVTCGD 473
+ +++ P +
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225
Query: 474 DKLIKVWELSGRKLFN--------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
D+ ++VW+ L GH+ VYS+ Q + S ++D +K W
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNL 283
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG--------DSFLVEWNESEGTIK 577
++ D P + Y + S T+++ D ++ W++ G
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Query: 578 RTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNV 617
G R V N F D + + W +
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 5e-09
Identities = 16/130 (12%), Positives = 49/130 (37%), Gaps = 20/130 (15%)
Query: 831 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPAS------------TF 877
+++V + +++ V+S + + L+N+ + +P +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL------NILV 931
+A ++ I G++D + ++ + L+GH+ + +A + N+
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 932 SSGADAQVTL 941
+ D + +
Sbjct: 373 TGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 43/288 (14%), Positives = 86/288 (29%), Gaps = 52/288 (18%)
Query: 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756
P N + S P+ P + +D D + + + + + V
Sbjct: 4 VPYNQRANHSKPIPPFLL---------DLDSQSVPDALKKQTNDYYILYNPALPREIDVE 54
Query: 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ------------------ 798
+ +S D +S V + ++N LA G N ++++
Sbjct: 55 LHKSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113
Query: 799 ----------------NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842
+P GK A+ + + V + E
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173
Query: 843 DSYVMSATGGKISLFNM-MTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901
+ + G ++ + + +S T +A P D IA G+ D + +++
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 902 V-------RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLC 942
R+D GH+ + + F+ +VS D V L
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.6 bits (197), Expect = 9e-17
Identities = 50/342 (14%), Positives = 108/342 (31%), Gaps = 40/342 (11%)
Query: 301 DHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSL-----HQGSTVISMDFHPS 355
+ EQL ++R A + ++ T ++D + R + H + +M +
Sbjct: 10 EAEQLKNQIRDA--RKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAK-IYAMHWGTD 66
Query: 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415
+ LL+ S +G++ +W+ +++ + P + + C+ + + ++
Sbjct: 67 SR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV------- 468
V ++ L Y +QI G +
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 469 --------------VTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513
V+ D K+W++ G F GHE+ + +IC N +
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFAT 243
Query: 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWC--TTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571
+ D + + + Y C T++ +S G L + D W+
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDA 299
Query: 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
+ AG + + + DS +K W+
Sbjct: 300 LKADRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.9 bits (172), Expect = 1e-13
Identities = 13/114 (11%), Positives = 40/114 (35%), Gaps = 4/114 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGG---KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887
E + I N + + + ++ + + + T ++F +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
+ G +D ++++ + L GH R++ L + + + D+ + +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 13/66 (19%), Positives = 24/66 (36%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQV 939
D + G D++ +++VR + GH+ I + F + N + DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 940 TLCVEH 945
L
Sbjct: 251 RLFDLR 256
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 833 AVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891
+ ++ SK+ +++ ++++ + + L D +A G
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATG 330
Query: 892 TEDSTIHIYN 901
+ DS + I+N
Sbjct: 331 SWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.6 bits (192), Expect = 3e-16
Identities = 47/314 (14%), Positives = 94/314 (29%), Gaps = 54/314 (17%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS------------------- 382
H+ V + FHP +++ S + I +W+ D +
Sbjct: 16 HRSP-VTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 383 ----KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438
+ +VS V+ P+G+++ A I+++
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--- 130
Query: 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPV 497
H V + L+ +C +D+ ++VW ++ ++ H V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 498 YSICPHHKENI------------------QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
I + + F+ S + D IK W T + +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
W +L+ + G + SC D L W+ +T + F T +
Sbjct: 249 WVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVTSL-DFHKTAPY 303
Query: 600 FLAVGEDSQIKFWD 613
+ D +K W+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.9 bits (159), Expect = 4e-12
Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 2/132 (1%)
Query: 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFM 869
+H + + + ++ K +++S + I ++++ T + T +
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Query: 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI 929
+ FH I +D T+ +++ + L H+ +T L F +
Sbjct: 245 GHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 930 LVSSGADAQVTL 941
+V+ D V +
Sbjct: 304 VVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.6 bits (153), Expect = 3e-11
Identities = 42/274 (15%), Positives = 69/274 (25%), Gaps = 68/274 (24%)
Query: 442 RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI 500
+ + H V + F ++ V+ +D IKVW+ +G +GH V I
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 501 CPHHKE----------------------------------------NIQFIFSTAIDGKI 520
H N I S + D I
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
K W T + W + + DG+ + SC D + W + K
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS----NDQTVRVWVVATKECKAEL 181
Query: 581 AGFRKKSNGV-------------------VQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621
R + + L+ D IK WD+ L
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F G + D ++
Sbjct: 242 TLVGHDNWVR--GVLFHSGGKFILSCADDKTLRV 273
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 9/178 (5%)
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
K W + + GH +PV + H + + S + D IK W Y+T
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGH 58
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
+ + G L SC + + E T+
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV-----SIMPNG 113
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+H ++ D IK W++ + + + R +++G L+A + D ++
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRV 169
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.1 bits (92), Expect = 8e-04
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921
T + FHP +++ +ED+TI +++ + + LKGH + +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 3e-13
Identities = 57/346 (16%), Positives = 110/346 (31%), Gaps = 33/346 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W +L + H + + F ++ GS + + +W L +
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCL--RTLVG 55
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
S + +I + W+ + H +
Sbjct: 56 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
Query: 448 DAHVGAVNDLAFAYPNKLL--------------CVVTCGDDKLIKVWELSGRK-LFNFEG 492
DA + + + L+ VV+ D ++KVW+ L +G
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
H VYS+ + S ++D I+ W +T + GH T +
Sbjct: 176 HTNRVYSLQFDGI----HVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGMELKDNI 229
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612
L S + DS + W+ G +T G K + V +N + +D +K W
Sbjct: 230 LVSG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
Query: 613 DMDN---VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
D+ + L + ++ G + R+R S + AV + + +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473
DG +V I+++ N + + + + +L V+
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-----SGMELKDNIL--VSGNA 235
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGS 530
D +K+W++ + S + N F+ +++ DG +K W T + +
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295
Query: 531 RVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
V ++ G + S + ++ L+ +
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 12/108 (11%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 835 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
+ D+ ++S + ++++ T + + T P + + + N + ++
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278
Query: 894 DSTIHIYNVRVDEVKSKLK-----GHQKRITGLAFSTSLNILVSSGAD 936
D T+ +++++ E L G + + S + + +
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928
N I G++D+T+ +++ + L GH + ++
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 70
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.4 bits (160), Expect = 4e-12
Identities = 36/335 (10%), Positives = 86/335 (25%), Gaps = 38/335 (11%)
Query: 339 VSLHQG--STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396
V + Q + + PS LLL+ S +G + ++ +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS-LLLITSWDGSL----------------TVYKFDIQAKN 46
Query: 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND 456
+ + + + T L + Q + +
Sbjct: 47 VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106
Query: 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN--FEGHEAPVYSICPHHKENIQFIFST 514
+ +KL+ G ++I + + V + N +
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166
Query: 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTM----LYSADGSRLFSCGTSK-----DGDSF 565
+ +++ + + L + D
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
++N S+ R + K +N ++F G D I W++ +
Sbjct: 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
Query: 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ ++ + N+L + T+D+ FK
Sbjct: 287 KNFA---KFNEDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 5e-05
Identities = 7/60 (11%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK---GHQKRITGLAFSTSLNILVSSG 934
+ P +++ I + D ++ +Y + L ++ + F + ++ + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.3 bits (152), Expect = 5e-11
Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 23/262 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+S AW+ D + + H + +Y +G N Q ++ H G V + +A + +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 468 VVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
VTCG D+ VW L GR + C N + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGS---------------RLFSCGTSKDGDSFLVEWNE 571
+ + S D R+FS + +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 572 SEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629
S+ V V F + V DS + D D + + +E
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 630 PNLPRLRFSKEGNLLAVTTADN 651
F E +L+A
Sbjct: 246 LLAV--TFITESSLVAAGHDCF 265
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.7 bits (140), Expect = 1e-09
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLKGHQKRITGLAFSTSLNILVSS 933
+ A++ D IAI + +HIY ++ +LK H ++TG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 934 GADAQVTL 941
G D +
Sbjct: 70 GTDRNAYV 77
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 29/282 (10%), Positives = 69/282 (24%), Gaps = 30/282 (10%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
+ ++ T + + +N E+ ++E + + K +
Sbjct: 10 ISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--------------- 53
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
V+ V W+PD N + T +++ G + + A K
Sbjct: 54 --VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111
Query: 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ + + + + N + + + D K + +
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT----SKDGDSFLVEWNESEGTI------ 576
SCG + V W + T+
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616
+ + T++ +A G D + D+
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.8 bits (91), Expect = 0.001
Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 25/136 (18%)
Query: 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409
+ ++ L+ + L+ +D AA L F + DVP
Sbjct: 247 LAVTFITESSLVAAGHDCFPVLF--------------TYDSAAGKLSFGGRL--DVPKQS 290
Query: 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC-- 467
S+ + + + + + + H +V+ ++ K C
Sbjct: 291 SQRGLTARERF-------QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ 343
Query: 468 VVTCGDDKLIKVWELS 483
T G D + +W++
Sbjct: 344 FCTTGMDGGMSIWDVR 359
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 8e-10
Identities = 42/303 (13%), Positives = 88/303 (29%), Gaps = 45/303 (14%)
Query: 339 VSLHQGST--VISMDFHPSHQTLLLVGSSNGEITLWELA-------------------MR 377
+ ++ V + + ++ G + I +W+
Sbjct: 8 IHCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 378 DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437
+R++ + + + + + + + + I ++ A
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAP 496
D+ + H AVN + F +V+ D+ IKVW + + GH+
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180
Query: 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556
+ + + + S + D I+ W D GH D R+ S
Sbjct: 181 IACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG 234
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIK 610
D + W+ R AG + S V + + ++ D I
Sbjct: 235 ----AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 290
Query: 611 FWD 613
WD
Sbjct: 291 IWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 4e-07
Identities = 29/222 (13%), Positives = 57/222 (25%), Gaps = 41/222 (18%)
Query: 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEA 495
G + L++ V L + ++ + V+ D IK+W+ + GH
Sbjct: 1 GRHSLQRIHCRSETSKGVYCLQYD--DQKI--VSGLRDNTIKIWDKNTLECKRILTGHTG 56
Query: 496 PVYSICPHHKENIQFI-----FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
V + + I ++ V + +
Sbjct: 57 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116
Query: 551 SRLFSCG----------------------------TSKDGDSFLVEWNESEGTIKRTYAG 582
++ S GD + WN S RT G
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176
Query: 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624
G+ ++ D+ I+ WD++ L +
Sbjct: 177 H---KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 215
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 15/117 (12%)
Query: 835 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
L D V+S + I L+++ + DN I G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSGAY 236
Query: 894 DSTIHIYNVRVDEVKSK---------LKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
D I ++++ L H R+ L F +VSS D + +
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 5e-04
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 320 YSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379
S+S +T + + V G + L++ GSS+ I LW++
Sbjct: 152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGAC 210
Query: 380 LVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439
L + + R+ + V + + AG+
Sbjct: 211 LRVLEGHEELVRCIRFDNK------------RIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
Query: 440 DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481
LR + H G V L F ++ V+ D I +W+
Sbjct: 259 CLRT---LVEHSGRVFRLQFD-EFQI---VSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.004
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI 929
D+ I G D+TI I++ E K L GH + L + + I
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.2 bits (136), Expect = 3e-09
Identities = 35/314 (11%), Positives = 82/314 (26%), Gaps = 27/314 (8%)
Query: 313 PSAEEVTYSSSRHQT-WSLDD----LPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSN 366
P+ + Y + LDD +P V + H S V ++ F P + L G +
Sbjct: 27 PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES 86
Query: 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426
G++ +W + S F+ + +S ++W +G + V
Sbjct: 87 GKVIVWGWTF-----------DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV--WELSG 484
+ + V +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
Query: 485 RKLFNFEGHEAPVYSICPHHKEN--IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542
+ V + + + S + + D P
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255
Query: 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ--FDTTQNHF 600
L D + + G D+ + W+ + + + +++ T
Sbjct: 256 FALSWLDSQKFATVG----ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Query: 601 LAVGEDSQIKFWDM 614
+++ D + F+++
Sbjct: 312 ISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 2e-08
Identities = 36/318 (11%), Positives = 88/318 (27%), Gaps = 27/318 (8%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ + + P+ + + + + D +P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFV----------------RCLDDGDSKVPPVVQFTGH 61
Query: 405 VPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDL 457
V+ V +SP Y+ + ++ + + + S+ G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517
++ + + LCVV G D + + C + + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 518 GKIK---AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574
G + + S + G + + +S D S S +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634
+ + + + F VG D+ I+ WD+ + + +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 635 LRFSKEGNLLAVTTADNG 652
+ GN ++ + +G
Sbjct: 301 VGVVATGNGRIISLSLDG 318
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 916
F P A D+ A D+TI +++V + K ++
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 917 RITGLAFSTSL---NILVSSGADAQVTL 941
++ ++S D +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNF 322
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.8 bits (135), Expect = 4e-09
Identities = 33/304 (10%), Positives = 81/304 (26%), Gaps = 20/304 (6%)
Query: 313 PSAEEVTYSSSRH-QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITL 371
P+ +++ Y + T + L T + H PS G +G + +
Sbjct: 27 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQ-TTVAKTSPSGY-YCASGDVHGNVRI 84
Query: 372 WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431
W+ ++ ++ + + + + + G L
Sbjct: 85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKR----------IAAVGEGRERFGHVFLFD 134
Query: 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491
+ G+ + + + V F
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
P S+ + + +DG D V + T DG+
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS---PDGT 251
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
++ S D + WN + +++T + + + T+ +++ + I F
Sbjct: 252 KIASAS----ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 612 WDMD 615
+ +
Sbjct: 308 VNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 41/332 (12%), Positives = 91/332 (27%), Gaps = 31/332 (9%)
Query: 326 QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPF 385
QT LPRT T + + P+ + + + +
Sbjct: 5 QTALFPSLPRT------ARGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLT------- 49
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
I+ + + SP G Y ++++ + +
Sbjct: 50 ------------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKT 96
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505
I G V D+++ +K + V G ++ V+ +A +
Sbjct: 97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 156
Query: 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565
I S + D + + + + + ++ Y+ DGS S G +
Sbjct: 157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 216
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNILTST 623
G + S V + + + D IK W++ + + +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276
Query: 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + +L L +A+
Sbjct: 277 PVGTRIED-QQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 2/71 (2%)
Query: 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 934
+ L P + I ++++ V H + T S S S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 935 ADAQVTLCVEH 945
V +
Sbjct: 78 VHGNVRIWDTT 88
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.2 bits (97), Expect = 2e-04
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK- 916
F+ + S F D IA + D TI I+NV +V+ + +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 917 RITGLAFSTSLNILVSSGADAQVTL 941
L + LVS A+ +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINF 307
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 5e-09
Identities = 30/325 (9%), Positives = 86/325 (26%), Gaps = 32/325 (9%)
Query: 333 LPRTVAV--SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
+PR +L+ G V ++ + + G + +W+++
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTR--HVYTGGKGCVKVWDISHPG------------ 83
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
P + + PDG + V + ++ A + +
Sbjct: 84 --NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141
Query: 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQF 510
+ G+ + + + + + C +
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
+++ +D +++W +D ++ Y G L S + + V
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Query: 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630
+ ++F F++ G+D+ + W + + +
Sbjct: 257 DKYQLHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 310
Query: 631 NLPRLRFSKEGNLLAVTTADNGFKI 655
+ S + + + D +
Sbjct: 311 S---CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 5e-08
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 8/136 (5%)
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + D + + + P G ++ V +++ + Q+
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV----NKPDKYQL 261
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
H V L FAY K V+ G D L+ W + V S +
Sbjct: 262 HLHESCVLSLKFAYCGKWF--VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD- 318
Query: 508 IQFIFSTAIDGKIKAW 523
++I + + D K +
Sbjct: 319 -KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 7/108 (6%), Positives = 23/108 (21%), Gaps = 2/108 (1%)
Query: 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
+ + ++ + L F +
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGK 285
Query: 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
D+ ++ + + + S +V+ D + T+
Sbjct: 286 DNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471
+ ++ G + +L+ + + Q +V + +K + VT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324
Query: 472 GDDKLIKVWEL 482
DK V+E+
Sbjct: 325 SGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 0.001
Identities = 7/69 (10%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 835 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893
+ + + +S ++ + + D+ I G+
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV-LSCDISV-DDKYIVTGSG 326
Query: 894 DSTIHIYNV 902
D +Y V
Sbjct: 327 DKKATVYEV 335
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
Q + + H+ +V + + + +T DDK+I+V++ + + L GH+ V+++
Sbjct: 4 QRTTLRGHMTSVIT-CLQFEDNYV--ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
H + S + D ++ W ++ + + + S+D
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 562 GDSFLVEWNESEGTIKRTY 580
+ W + + +
Sbjct: 118 NTLHV--WKLPKESSVPDH 134
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL--FNFEGHEAPVYSI 500
+ H ++ + Y + + + G + ++ L KL N ++S+
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
K + + DG+ + D
Sbjct: 331 NFKGK---TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQ 915
F + + +NI+ G ++ +IYN+R + V + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDA 324
Query: 916 KRITGLAFSTSLNILVSSGADAQVTL 941
+I + F ++ + D Q L
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (105), Expect = 2e-05
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943
++N + G +D I +Y+ + +L GH + L ++ ILVS D V +
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 944 EH 945
Sbjct: 81 IK 82
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 35/328 (10%), Positives = 90/328 (27%), Gaps = 16/328 (4%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
+ + + +S H G V ++ + +L+ GS++ + +W++
Sbjct: 38 YDSINKKFLLQLSGHDGG-VWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHN 94
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + +I V S Y +
Sbjct: 95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
G + + + + V D+ LI + L+ GH +Y +
Sbjct: 155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHE 212
Query: 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ S ++D I+ W + + S +
Sbjct: 213 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--------DKFLVSAAADGS 264
Query: 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
R ++ + + F + ++ L G ++Q +++ + ++ +
Sbjct: 265 IRGWDANDYSRKFSYHHTNLSAITTFYVS-DNILVSGSENQFNIYNLRSGKLVHANI-LK 322
Query: 628 GLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F L+A D +
Sbjct: 323 DADQIWSVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 23/172 (13%), Positives = 48/172 (27%), Gaps = 26/172 (15%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H S + + F ++ G+ + I +++ + L+
Sbjct: 11 HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQ------------------- 48
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
V + ++ G V + + + + H V L
Sbjct: 49 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK----KGCCTHVFEGHNSTVRCLDIVE 104
Query: 462 PNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513
+ +VT D + VW+L G E + +EN F+
Sbjct: 105 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 31/337 (9%), Positives = 78/337 (23%), Gaps = 56/337 (16%)
Query: 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411
H+ ++V + + + ++A V K +
Sbjct: 4 LKAGHE-YMIVTNYPNNLHVVDVASDT--VYKSCVM----------------PDKFGPGT 44
Query: 412 VAWSPDGNYVGVA----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+PD V + I L + + S ++ A + K +
Sbjct: 45 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 104
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKI------ 520
+L + + +L F + + ++ A DG +
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 521 -KAWLYDT--------MGSRVDYDAPGHWCTTMLYSADGSRLFSC-------------GT 558
T + + FS
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618
+ D + + G + + G +++ +D+
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGVLNRLAKYDLKQRK 283
Query: 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
++ + + + F K+G+ L + N +
Sbjct: 284 LIKAANL-DHTYY--CVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 21/237 (8%), Positives = 56/237 (23%), Gaps = 25/237 (10%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
G ++ S P + + + ++ + +++ A
Sbjct: 86 EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRT 140
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-------------- 447
F +P V + + DG+ + + + + + L +
Sbjct: 141 F-PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199
Query: 448 ---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
H ++ + + T +L K E +
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
++ + + H + + G +L+ GT D
Sbjct: 260 SPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.2 bits (116), Expect = 1e-06
Identities = 30/360 (8%), Positives = 77/360 (21%), Gaps = 36/360 (10%)
Query: 241 TAAAANAN-ALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQN 299
+AAAA+A A G + + + + +T + + V T G
Sbjct: 8 SAAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSC-AGCGVTLGHSLGAF 66
Query: 300 PDHEQL---MKRLRPAPSAEEVTYSSSRHQT---WSLDDLPRTVAVSLHQGSTVI----- 348
A ++ + R + + L
Sbjct: 67 LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126
Query: 349 -SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407
+ S LL + + ++ A+C +
Sbjct: 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGA-----SDDQLTKSASCFHIHPGA------- 174
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+ + S + Q+ A + +
Sbjct: 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSIL 234
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAP--VYSICPHHKENIQFIFS-----TAIDGKI 520
+ G + + + + I + + +
Sbjct: 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294
Query: 521 KAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579
G + GH ++ + DG+ ++ L ++ + + +
Sbjct: 295 NTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV--LDIYDAASDQDQSS 352
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 32/291 (10%), Positives = 73/291 (25%), Gaps = 31/291 (10%)
Query: 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR 377
+ + +G TV + +HP + ++ S + + ++
Sbjct: 125 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HPEFIVNVK 182
Query: 378 DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437
+ K+ + + ++ W Y A +
Sbjct: 183 E-----TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237
Query: 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLC---------VVTCGDDKLIKVWELSGRKLF 488
L + F +P ++ + + +K+
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297
Query: 489 NFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWL--YDT-----------MGSRVDY 534
+G I H K ++ + D +I + +D + D
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 357
Query: 535 DAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
Y+ G + FS K+ S LV ++ +K R
Sbjct: 358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.0 bits (100), Expect = 1e-04
Identities = 24/246 (9%), Positives = 55/246 (22%), Gaps = 24/246 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSNGEITLWELAMRDRLVSKPFK 386
W + ++ + V + L V G+I L + + +
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-- 59
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS- 445
+V S G Y+ V I + +
Sbjct: 60 ------------------TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
+ Y ++ + + + V + H
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + I ++ + + +T G + + T+ L G
Sbjct: 162 EPRVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY 220
Query: 565 FLVEWN 570
F+ N
Sbjct: 221 FMTAAN 226
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 3e-06
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQ 915
+S PA + +++A G+ D+ I IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 916 KRITGLAFSTSLNILVSSGADAQVTL 941
+ L + T + LVSSGADA +
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKR 283
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 11/95 (11%), Positives = 21/95 (22%), Gaps = 10/95 (10%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE 506
I H + L +++ D I W S + H + S+ +
Sbjct: 9 ISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQ 58
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541
I ++ A
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 93
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 4e-04
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
++ + + P + + V I +YS + +
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK- 252
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
++AH VN+L + P+ L V+ G D IK W
Sbjct: 253 -ALNAHKDGVNNLLWETPSTL---VSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 31/287 (10%), Positives = 72/287 (25%), Gaps = 28/287 (9%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL---------AMRDRLVSKPFKIWDMAA 392
H + ++ +P L+ GS +G I W + SK + ++
Sbjct: 12 HNKG-ITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 393 CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG 452
I K S +VA + + + V + + + ++
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512
N + + G+ + A I E
Sbjct: 126 V-----SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 180
Query: 513 STAIDGKIKA-----WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ R W + + + D+ +
Sbjct: 181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240
Query: 568 EWN-ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
++ + I + + N ++ + ++ G D+ IK W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 8/228 (3%)
Query: 325 HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKP 384
+L TV + S+D L+ G +NG + + EL+ L +
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFE 222
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
+ + + + + G ++ +
Sbjct: 223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 282
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPH 503
AH V L+F + + + G D ++ W++ + ++ H +
Sbjct: 283 LGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
+ +L S + D C D S
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV---CLDRS 385
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 18/173 (10%), Positives = 41/173 (23%), Gaps = 21/173 (12%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN------------FE 491
+ AH + ++ + V+C D +KVW+ N
Sbjct: 7 ANAGKAHDADIFSVSAC-NSFT---VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
H V + + +T+ G + + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFY--RITREDETKKVIFEKLDLLDSDMKKH 120
Query: 552 RLFSCGTSKDGDSFLVEW---NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601
++ D L + +GT + + + + L
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 36/352 (10%), Positives = 87/352 (24%), Gaps = 61/352 (17%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H + S+ S + S +G + +W+ + D K S S
Sbjct: 13 HDAD-IFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSY------SHFVHKSG 62
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR-------QHSQIDAHVGAV 454
V + + + + V + Y ++ + D +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 455 NDLAFAYPNKLLC---VVTCGDDKLIKVWEL-------------------SGRKLFNFEG 492
L + N L +V +W+ + +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIK---------------AWLYDTMGSRVDYDAP 537
S+ + I + +G ++ + +
Sbjct: 183 PSQFATSVDISER---GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-- 595
+ + + D + + + + G S+ V+
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFSKEGNLLA 645
+ + G D +++FWD+ +T+ + L + G+ LA
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 42/357 (11%), Positives = 96/357 (26%), Gaps = 25/357 (7%)
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646
+ + ++ D +K WD ++ D + L A+
Sbjct: 14 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAI 72
Query: 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706
++A L + + + L + S A +
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKK-VIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766
+ ++ + + + S L ES T S+
Sbjct: 132 DRLLSHRLVAT------DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185
Query: 767 VVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQH----WLPSSGLLM 821
+ S GL+A G NG ++ + + ++ S + + S
Sbjct: 186 FATSV-DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244
Query: 822 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFH 881
+A + + ++ + S + S + ++++ L+F+
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV------MSLSFN 298
Query: 882 PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI----TGLAFSTSLNILVSSG 934
+ D + ++V+ E + L H I LA + L G
Sbjct: 299 DS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 29/291 (9%), Positives = 77/291 (26%), Gaps = 24/291 (8%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL---------------VSKPFK 386
H + + ++ + L + G I W+++ +
Sbjct: 11 HNKA-ITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
++ ++ S VA +G+A + + +
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 447 IDAHV---GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503
V + +A + + + V + + H A + S+
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563
+ + + + + + + + + + G S D
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG-SLDNS 247
Query: 564 SFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKFWD 613
+ WN ++ + + V + ++ G+DS IKFW+
Sbjct: 248 VIV--WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.004
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473
WSPD + + + +++ +D + + +VN + + + V+ G
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTI---VSAGQ 288
Query: 474 DKLIKVWELS 483
D IK W +
Sbjct: 289 DSNIKFWNVP 298
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.4 bits (108), Expect = 9e-06
Identities = 34/315 (10%), Positives = 83/315 (26%), Gaps = 39/315 (12%)
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
QT+ + + +I +W L L + DVP V + SP
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGAL-----------------TLTQVVDVPGQVQPMVVSP 46
Query: 417 DGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT--CGD 473
D Y+ V + + Y A + + A G++ ++ + + + V + G+
Sbjct: 47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN 106
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533
+ ++ + + + +S ++ + + + L+
Sbjct: 107 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA---LKQDRICLFTVSDDGHL 163
Query: 534 YDAPGHWCTTMLYSADGSRLFSC------GTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
TT+ + +F ++ S V +
Sbjct: 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 223
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL---------PR-LRF 637
+ + ++ + S +G + + PR
Sbjct: 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV 283
Query: 638 SKEGNLLAVTTADNG 652
G L +
Sbjct: 284 DHSGKYLIAAGQKSH 298
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.8 bits (105), Expect = 4e-05
Identities = 22/216 (10%), Positives = 49/216 (22%), Gaps = 9/216 (4%)
Query: 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFA 460
D +V S G Y+ V + + + ++I
Sbjct: 59 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIETSKMEG 117
Query: 461 YPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519
+ +K + + + + H + + I ++ +
Sbjct: 118 WEDKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 176
Query: 520 IKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
+ +T VDY + TT + + L G F+ N +
Sbjct: 177 FIVNVKETGKILLVDYTDLNNLKTTEISA--ERFLHDGGLDGSHRYFITAANARNKLVVI 234
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614
+ + T A
Sbjct: 235 DTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.6 bits (101), Expect = 7e-05
Identities = 34/345 (9%), Positives = 84/345 (24%), Gaps = 45/345 (13%)
Query: 316 EEVTYSSSRHQTWSLDDLP-----RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEIT 370
+ + +R + D + + ++ G T + P + + + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 371 LWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430
+L + L + S+ A SPDG +A + +
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVK--------------SLFGAALSPDGKT--LAIYESPV 103
Query: 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF 490
+L + + DA + AF P ++ + D + +
Sbjct: 104 RLELTHFEVQPTRVALYDAETLSRRK-AFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162
Query: 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
G + P + D +++ G
Sbjct: 163 AGT---LVEDKPIQSWEAETYAQ--PDVLAVWNQHESSGVMATPFYTARKDIDPADPT-- 215
Query: 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610
+ L+ + G + R A G + ++
Sbjct: 216 ----------AYRTGLLTMDLETGEMAMR--EVRIMDVFYFSTAVNPAKTRAFGAYNVLE 263
Query: 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+D++ + + S +G+ + + A
Sbjct: 264 SFDLEKNASIKRVPL-PHSYY--SVNVSTDGSTVWLGGALGDLAA 305
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 25/343 (7%), Positives = 67/343 (19%), Gaps = 22/343 (6%)
Query: 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660
+A Q D+ +L + + +R + + + G +
Sbjct: 18 IAFVSRGQAFIQDVSGTYVLKVPEPLR----IRYVRRGGDTKVAFIHGTREGDFLGIYDY 73
Query: 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720
E + K + + V +
Sbjct: 74 RTGKAEKFEENLGN-VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 132
Query: 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG-L 779
+ S + K + + T+ A
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 192
Query: 780 LALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838
L S + + + +P + +
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE--------- 243
Query: 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898
+ + ++++ S + E +
Sbjct: 244 -AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301
Query: 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTL 941
Y+V+ K+ + +T L S ++ D ++
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.6 bits (93), Expect = 6e-04
Identities = 23/305 (7%), Positives = 63/305 (20%), Gaps = 65/305 (21%)
Query: 408 SVSRVAWSPDGNYVGVA--------------------FTKHLIQLYSYAGSNDLRQHSQI 447
+ V D + F ++L +++ + +
Sbjct: 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA 103
Query: 448 DAHV--------------------GAVNDLAFAYPNKLLC--------VVTCGDDKLIKV 479
+ + D + ++ + + I V
Sbjct: 104 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 163
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW-----LYDTMGSRVDY 534
+++ GRK+F + Y+ + ++ + + + +
Sbjct: 164 YDMEGRKIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 221
Query: 535 DAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ 592
P + + + R
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281
Query: 593 FDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
+ E + +D+ + + NL LR S + + V D
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN------NLTDLRLSADRKTVMVRKDD 335
Query: 651 NGFKI 655
Sbjct: 336 GKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.1 bits (89), Expect = 0.002
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 17/149 (11%)
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI---- 401
V++ F + ++ + + + + DM S P
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267
Query: 402 ----FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDL 457
+ + S Y A K ++ Y ++ + DL
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDL 320
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRK 486
+ K + + DD I + L +
Sbjct: 321 RLSADRKTV--MVRKDDGKIYTFPLEKPE 347
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.1 bits (89), Expect = 0.002
Identities = 28/267 (10%), Positives = 72/267 (26%), Gaps = 29/267 (10%)
Query: 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS 394
V ++ GS + P + + + + ++++ + A + + + P
Sbjct: 22 NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 395 LPFQASIFKDVPIS----------------------VSRVAWSPDGNYVGVAFTKHLIQL 432
P ++ S +A SPDG + V
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 433 YSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492
+ + + + P+ V D I V + + +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGI----AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
EA I + + ++ + + + G + + DG +
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRT 579
++ + + + + + TI T
Sbjct: 258 VYVALS---FCNTVSVIDTATNTITAT 281
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.004
Identities = 26/240 (10%), Positives = 56/240 (23%), Gaps = 27/240 (11%)
Query: 408 SVSRVAWSPDGNYVGVAFTKH-------------LIQLYSYAGSNDLRQHSQIDAHVGA- 453
+ + DG+++ A T + + + D+ VG
Sbjct: 48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY 107
Query: 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513
+ K L + V +L G+ + P + F+
Sbjct: 108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM--LDVPDCYHIFPTAPDTFFMHC 165
Query: 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML------YSADGSRLFSCGTSKDGDSFLV 567
DG + + T G+ YS RL + G +
Sbjct: 166 R--DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP--TYTGKIHQI 221
Query: 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
+ + + + + +A + +D + A
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 280
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 945 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.81 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.79 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.78 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.56 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.53 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.53 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.49 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.13 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.13 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.1 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.1 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.07 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.02 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.97 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.95 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.93 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.92 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.88 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.86 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.84 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.69 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.67 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.48 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.37 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.29 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.13 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.06 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.99 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.87 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.81 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.8 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.76 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.63 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.62 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.55 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.54 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.53 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.51 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.45 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.42 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.42 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.42 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.41 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.21 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.18 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.13 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 97.1 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.86 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 96.67 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.31 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 96.09 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.67 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.49 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.7 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.51 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.14 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.54 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.14 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 90.55 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.29 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 89.36 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 83.0 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-37 Score=331.82 Aligned_cols=292 Identities=13% Similarity=0.199 Sum_probs=251.2
Q ss_pred ceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 336 ~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
+.+++++|...|+|++|||+|++ ||+|+ ||.|+|||+.++..... .......+|.+.|.+++|+
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~s 106 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKLL 106 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEEC
T ss_pred eEEEECCCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEEc
Confidence 45677899999999999999995 89987 89999999987654321 1112356799999999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~ 494 (945)
|+|++|++|+.||.|++||+..... +....+..|...|.+++|+|++. ++++++.|+.|++|+ .+++......+|.
T Consensus 107 ~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~ 183 (337)
T d1gxra_ 107 PDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCCEEEEeeccccccccccccccc-ccccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence 9999999999999999999876433 22235778999999999999999 899999999999999 8888888899999
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
..|.+++|++ ++..+++++.|+.+++||+++++....+. +...|.+++|+|+++++++++. ++.+++||+.++
T Consensus 184 ~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~ 256 (337)
T d1gxra_ 184 DGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKP 256 (337)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSS
T ss_pred cccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccccc
Confidence 9999999976 56899999999999999999887766554 5668999999999999999885 899999999988
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEE
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~ 654 (945)
+... ...|.. .+..++|+|++++|++++.||.|++||+.+++.+..+.. ...|.+++|+|++++|++|+.||.|+
T Consensus 257 ~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 257 DKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp CEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred cccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC---CCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 7654 345554 799999999999999999999999999999998887753 34799999999999999999999999
Q ss_pred EEEC
Q 002264 655 ILAN 658 (945)
Q Consensus 655 iw~~ 658 (945)
|||+
T Consensus 332 vWdl 335 (337)
T d1gxra_ 332 VYEV 335 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.9e-37 Score=324.83 Aligned_cols=315 Identities=17% Similarity=0.274 Sum_probs=263.9
Q ss_pred EEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 479 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
.|.........+.+|.++|++++|+| ++++|++|+.||+|++||+.+++....+..|...|.+++|+|++..++++..
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccCCCCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc
Confidence 35533444567899999999999987 5589999999999999999999999999999999999999999999999885
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++.+..|+....+....+.++.. .+..+.++++++.+++++.|+.+++||+.+++.+..+..+.. .+.+++|+
T Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 152 (317)
T d1vyhc1 80 ----DMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPN 152 (317)
T ss_dssp ----TSCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEC
T ss_pred ----ccccccccccccccccccccccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceeeecc
Confidence 78899999999888888887776 788899999999999999999999999999999988876654 78999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (945)
|++.+|++++.|+.|++|+..++ .....+..
T Consensus 153 ~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~------------------------------------------------ 183 (317)
T d1vyhc1 153 QDGTLIASCSNDQTVRVWVVATK-ECKAELRE------------------------------------------------ 183 (317)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC-CEEEEECC------------------------------------------------
T ss_pred cCCCEEEEEeCCCeEEEEeeccc-eeeEEEec------------------------------------------------
Confidence 99999999999999999999766 22222111
Q ss_pred CCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCC
Q 002264 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (945)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~ 798 (945)
+...+.++.++|++.......
T Consensus 184 --------------------------------------------~~~~i~~~~~~~~~~~~~~~~--------------- 204 (317)
T d1vyhc1 184 --------------------------------------------HRHVVECISWAPESSYSSISE--------------- 204 (317)
T ss_dssp --------------------------------------------CSSCEEEEEECCSCGGGGGGG---------------
T ss_pred --------------------------------------------CCCCceEEEEeeccccceeec---------------
Confidence 344555666666543221111
Q ss_pred CCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeE
Q 002264 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF 877 (945)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~ 877 (945)
........+..++.++++++ |+.|++||+.+++++.++.+|...|++
T Consensus 205 --------------------------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~ 252 (317)
T d1vyhc1 205 --------------------------------ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252 (317)
T ss_dssp --------------------------------CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred --------------------------------cccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence 11112223345677788887 899999999999999999999999999
Q ss_pred EEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCCceEEEEe
Q 002264 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCV 943 (945)
Q Consensus 878 l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWd 943 (945)
++|+| ++++|++|+.||.|+|||+.+++++..+.+|.+.|++++|+|++++|+||+.||+|+|||
T Consensus 253 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 253 VLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999 899999999999999999999999999999999999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4e-36 Score=319.32 Aligned_cols=286 Identities=21% Similarity=0.362 Sum_probs=259.7
Q ss_pred EEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 338 ~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
..+.+|.+.|++++|+|+++ +||||+.||+|+|||+.+++.+. .+.+|...|.+++|+|+
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~-------------------~~~~h~~~V~~~~~~~~ 70 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHS 70 (317)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTT
T ss_pred EEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCcEEEEeeecc
Confidence 34557999999999999998 59999999999999999987663 37789999999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCC
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~ 496 (945)
+.++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++|| .+++.+..+.+|...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 145 (317)
T d1vyhc1 71 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 145 (317)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCc
Confidence 9999999999999999988766544 5668999999999999999 899999999999999 889999999999999
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCC--------------------CEEEEE
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--------------------SRLFSC 556 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~--------------------~~l~~~ 556 (945)
+.+++|++ ++.+|++++.|+.|++|++.+......+..+...+.++.++|++ ..++++
T Consensus 146 ~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (317)
T d1vyhc1 146 VRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223 (317)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred ceeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence 99999876 56899999999999999999999999998898899999998764 356666
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
+. ++.|++||..+++.+..+.+|.. .+.+++++|++++|++|+.||.|++||+.+++++..+..|.. .|++++
T Consensus 224 ~~----d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~ 296 (317)
T d1vyhc1 224 SR----DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLD 296 (317)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEE
T ss_pred cC----CCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEE
Confidence 64 89999999999999999999877 899999999999999999999999999999999999987654 899999
Q ss_pred EcCCCCEEEEEECCCcEEEEE
Q 002264 637 FSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 637 ~sp~g~~l~~~~~dg~i~iw~ 657 (945)
|+|++++|++|+.||+|++||
T Consensus 297 ~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 297 FHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ECSSSSCEEEEETTSEEEEEC
T ss_pred EcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.7e-36 Score=314.96 Aligned_cols=286 Identities=14% Similarity=0.220 Sum_probs=243.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
+.+.+.+++++|+|+. ||.++ ++.|.+||+.+++.. ..+.+|.+.|++++|+|+|++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~-------------------~~~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDT-------------------EIYTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCC-------------------EEECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCcee-------------------EEEcCCCCCEEEEEEeCCCCeEe
Confidence 4457788999999995 67665 678999999887655 34788999999999999999999
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC--CCcEEEEe-CCCceEEEecCCCCCEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~--d~~i~vwd-~~~~~~~~~~~~~~~v~~ 499 (945)
+|+.||+|++||+.+++.... ..+.+|.++|.+++|+|+++ ++++++. +..+++|+ .+++....+.+|...|++
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998765432 25778999999999999999 7777765 56699999 888888899999999999
Q ss_pred EEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~ 579 (945)
++|+|+++ ..+++|+.||.|++||+++.+....+..+...|.++.|+|+++++++++. ++.+++||..++.....
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence 99987532 36889999999999999999888889899999999999999999999885 89999999999887776
Q ss_pred ecc-------ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCc
Q 002264 580 YAG-------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (945)
Q Consensus 580 ~~~-------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~ 652 (945)
+.. |.. .|.+++|+|++++|++|+.||.|++||+++++++..+..+... ....+.+.+++..|++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred ccccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 643 333 6899999999999999999999999999999999988765431 2334455556678999999999
Q ss_pred EEEEECC
Q 002264 653 FKILANA 659 (945)
Q Consensus 653 i~iw~~~ 659 (945)
|++||++
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-35 Score=313.22 Aligned_cols=244 Identities=14% Similarity=0.177 Sum_probs=213.3
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccce--eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS--QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
+|...|.+++|||+|++||+|+ ||.|+|||+.++....... ...+|.+.|.+++|+|+++ +|++|+.|+.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence 7999999999999999999987 8999999998765443322 3457999999999999999 899999999999999
Q ss_pred -C--CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEee
Q 002264 482 -L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (945)
Q Consensus 482 -~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 558 (945)
. +++....+..|...+.+++|++ ++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3 3345677888999999999976 5689999999999999999999888888888999999999999999999885
Q ss_pred cCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEc
Q 002264 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (945)
Q Consensus 559 ~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (945)
++.+++||+++++.+..+.. .. .+.+++|+|+++.+++++.||.+++||+++++..... .+...|.+++|+
T Consensus 204 ----d~~v~i~d~~~~~~~~~~~~-~~-~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~~s 274 (337)
T d1gxra_ 204 ----DNTVRSWDLREGRQLQQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFA 274 (337)
T ss_dssp ----TSEEEEEETTTTEEEEEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEEC
T ss_pred ----cccccccccccceeeccccc-cc-ceEEEEEcccccccceecccccccccccccccccccc---ccccccceEEEC
Confidence 89999999999998877653 33 6899999999999999999999999999988876443 344589999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 002264 639 KEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 639 p~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
|+|++|++++.||.|++||..++
T Consensus 275 ~~g~~l~s~s~Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 275 YCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999999999998766
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.6e-35 Score=321.87 Aligned_cols=306 Identities=17% Similarity=0.255 Sum_probs=240.2
Q ss_pred eEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 337 ~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
....++|++.|+||+|||||+ +||+|+ |++|+|||+.+++.+......... .............+|...|.+++|+|
T Consensus 55 l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~ 131 (388)
T d1erja_ 55 LHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 131 (388)
T ss_dssp EEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEECC
Confidence 345678999999999999999 589987 999999999988876431110000 00001111223557889999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~ 495 (945)
+|++|++|+.||.|++|+...++.+. .+.+|...|.+++|++++. .+++++.++.+++|| ...........+ .
T Consensus 132 ~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~ 205 (388)
T d1erja_ 132 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIE-D 205 (388)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECS-S
T ss_pred CCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccc-c
Confidence 99999999999999999999887665 6778999999999999999 899999999999999 666666655544 4
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEE
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~i 568 (945)
...++.+.+. ++.+|++++.||.|++||..++.....+. .|...|.+++|+|++++|++++. ++.|++
T Consensus 206 ~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~i 280 (388)
T d1erja_ 206 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 280 (388)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred ccccccccCC-CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEEE
Confidence 4555566543 66899999999999999999887665543 35668999999999999999985 899999
Q ss_pred EeCCCCcee------------eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEE
Q 002264 569 WNESEGTIK------------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (945)
Q Consensus 569 wd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (945)
||+.++... .....|.. .+.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.+++
T Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~~ 357 (388)
T d1erja_ 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVA 357 (388)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEE
T ss_pred EeccCCccccccccccccceeeecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEEE
Confidence 999865432 23334444 789999999999999999999999999999999999987654 788886
Q ss_pred E------cCCCCEEEEEECCCcEEEEECC
Q 002264 637 F------SKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 637 ~------sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+ +|++++|++|+.||+|+||+++
T Consensus 358 ~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 358 VANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 4 6789999999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-34 Score=308.62 Aligned_cols=343 Identities=19% Similarity=0.303 Sum_probs=247.1
Q ss_pred ccccCCCccE-EEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 400 SIFKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 400 ~~~~~h~~~V-~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
..+.||...| +|++| ++++||+|+.||+|+|||+.+++.+. ++.+|.++|++++|+|++ +|++|+.|++|+
T Consensus 6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~ 77 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVR 77 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEE
T ss_pred EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEecccccc
Confidence 4588998875 66655 68899999999999999999987766 788999999999999854 789999999999
Q ss_pred EEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 479 vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
+|+ ...+....................+++..+++++.|+.|++||+................ .....+..
T Consensus 78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~------- 149 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPEE------- 149 (355)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTTT-------
T ss_pred cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceecccc-------
Confidence 999 777776666655555555544455577899999999999999987755443222111100 00111110
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
..........+.. . ...+.++++.++++..|+.|++||+.+++.+.....+.. .+.++.+
T Consensus 150 ---------------~~~~~~~~~~~~~-~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~ 209 (355)
T d1nexb2 150 ---------------NPYFVGVLRGHMA-S--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIY 209 (355)
T ss_dssp ---------------CTTEEEEEECCSS-C--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEE
T ss_pred ---------------ccceeeeeeeccc-c--ccccccccceeeeecccceeeeeecccccceeeeecccc--ccccccc
Confidence 1111112222222 2 234556788999999999999999999998887765544 7899999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccC
Q 002264 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (945)
+|++..+++++.|+.|++|+..++. ....
T Consensus 210 ~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~-------------------------------------------------- 238 (355)
T d1nexb2 210 DHERKRCISASMDTTIRIWDLENGE-LMYT-------------------------------------------------- 238 (355)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTCC-EEEE--------------------------------------------------
T ss_pred cccceeeecccccceEEeeeccccc-cccc--------------------------------------------------
Confidence 9999999999999999999987551 0000
Q ss_pred CCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCC
Q 002264 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (945)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~ 797 (945)
T Consensus 239 -------------------------------------------------------------------------------- 238 (355)
T d1nexb2 239 -------------------------------------------------------------------------------- 238 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCee
Q 002264 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAST 876 (945)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~ 876 (945)
+.+ |...|.+++++ +++|++|+ ||+|++||+.++... +..|...+.
T Consensus 239 ---------------------------~~~--h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~ 285 (355)
T d1nexb2 239 ---------------------------LQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLS 285 (355)
T ss_dssp ---------------------------ECC--CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCC
T ss_pred ---------------------------ccc--ccccccccccc--cceeeeeeccccccccccccccee--cccccCCce
Confidence 001 55556666664 45777777 788888888776554 334566666
Q ss_pred EEE-eecCCCceEEEeecCceEEEEecccceEEE-EecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 877 FLA-FHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 877 ~l~-~s~~~~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
++. +++ ++++|++| .||.|+|||+++|+++. .+.+|.++|++++|+|+ ..+++++.||+++||.++
T Consensus 286 ~~~~~~~-~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 286 AITTFYV-SDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp CCCEEEE-CSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred EEEEEcC-CCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence 654 556 77777766 48999999999999885 57889999999999987 578889999998887653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.4e-34 Score=313.21 Aligned_cols=346 Identities=15% Similarity=0.264 Sum_probs=258.6
Q ss_pred EEEEECCCcEEEEEccCCccccc-ceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
.+.+..++.+.+|+......+.. +....+|.+.|++++|+|||+ +|++|+ |++|++|| .+++.+..+..+.....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~ 107 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK 107 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence 34567788899999766544321 112236999999999999999 899987 89999999 88888888776654322
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
.... + .......+...|.+++|+|++++|++++. ++.|++||...++.+.
T Consensus 108 ~~~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~ 157 (388)
T d1erja_ 108 DPEN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVM 157 (388)
T ss_dssp -------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred cccc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----cccccccccccccccc
Confidence 1110 0 00112345667999999999999999985 8999999999999999
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC-CCCEEEEEECCCcEEEEE
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILA 657 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l~~~~~dg~i~iw~ 657 (945)
.+.+|.. .+.++.+++++..+++++.++.+++||..+.........+. ...++.+++ ++.+|++++.||.|++|+
T Consensus 158 ~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 233 (388)
T d1erja_ 158 ILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWD 233 (388)
T ss_dssp EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred ccccccc-cccccccccccccccccccceeeeeeecccccccccccccc---ccccccccCCCCCeEEEEcCCCeEEEee
Confidence 9998877 79999999999999999999999999999988887776544 345555555 899999999999999999
Q ss_pred CCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCC
Q 002264 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDK 737 (945)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 737 (945)
..++.. ...+....
T Consensus 234 ~~~~~~-~~~~~~~~----------------------------------------------------------------- 247 (388)
T d1erja_ 234 SETGFL-VERLDSEN----------------------------------------------------------------- 247 (388)
T ss_dssp TTTCCE-EEEEC--------------------------------------------------------------------
T ss_pred cccCcc-ceeecccc-----------------------------------------------------------------
Confidence 987622 11110000
Q ss_pred CcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCC
Q 002264 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (945)
Q Consensus 738 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (945)
... .+|...|.+++|+|+++.|++++.||.|++|++........... ...
T Consensus 248 -----------------~~~---~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~ 297 (388)
T d1erja_ 248 -----------------ESG---TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT----------PNS 297 (388)
T ss_dssp -----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------------
T ss_pred -----------------ccc---cCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc----------ccc
Confidence 000 12778899999999999999999999999999865332111100 001
Q ss_pred cccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEe------ecCCCceEEE
Q 002264 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAF------HPQDNNIIAI 890 (945)
Q Consensus 818 ~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~------s~~~~~~las 890 (945)
+... ..... |...|.+++|+|++++|++|+ ||.|++||+.+++++.++++|.+.|+++++ +| ++.+||+
T Consensus 298 ~~~~-~~~~~--~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s 373 (388)
T d1erja_ 298 GTCE-VTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFAT 373 (388)
T ss_dssp -CEE-EEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEE
T ss_pred ccee-eeccc--ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEE
Confidence 1111 11222 788999999999999999998 899999999999999999999999999874 67 7899999
Q ss_pred eecCceEEEEecc
Q 002264 891 GTEDSTIHIYNVR 903 (945)
Q Consensus 891 g~~dg~v~vwd~~ 903 (945)
|+.||+|+||+++
T Consensus 374 ~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 374 GSGDCKARIWKYK 386 (388)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCEEEEEeee
Confidence 9999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-33 Score=301.24 Aligned_cols=291 Identities=18% Similarity=0.271 Sum_probs=250.2
Q ss_pred ceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 336 ~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
...+++. |.+.|+|++|+|+++ +||||+.||+|+|||+.+++.+. .+.+|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEE-------------------EEECSCSCEEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEE-------------------EEecccccEEeeEe
Confidence 3455554 999999999999999 59999999999999999887663 36779999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCccc-ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~ 492 (945)
+|+++++++|+.|+.+++|+....... .....+.+|...........+. .+..+..|.....|+ ...........
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 999999999999999999998765432 2233566788877777766654 577788899999999 66666777777
Q ss_pred CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
+...+....+.+ .+.++++++.|+.|++||++++.....+..|...|++++|+|++++|++++. ++.|++||+.
T Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeec
Confidence 888888888765 4579999999999999999999999999999999999999999999999985 8999999999
Q ss_pred CCceeeEeccc-cCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCC
Q 002264 573 EGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
.......+... ....+..++|+|++++|++|+.||.|++||+.+++++..+..|.. +|.+++|+|++++|++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred ccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCC
Confidence 98887766432 233588999999999999999999999999999999999987654 899999999999999999999
Q ss_pred cEEEEE
Q 002264 652 GFKILA 657 (945)
Q Consensus 652 ~i~iw~ 657 (945)
.|++||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.5e-34 Score=313.31 Aligned_cols=290 Identities=16% Similarity=0.111 Sum_probs=232.0
Q ss_pred CCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEE
Q 002264 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 344 ~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
.++|+|++|||||+ +||+|+.||.|+|||+.+++... ...+.+|.++|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~-----------------~~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQ-----------------VHELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEE-----------------EEEecCCCCCEEEEEECCCCCEEEE
Confidence 35899999999999 59999999999999998765432 1347899999999999999999999
Q ss_pred EECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCce----EEEecCCCCCEE
Q 002264 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK----LFNFEGHEAPVY 498 (945)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~----~~~~~~~~~~v~ 498 (945)
|+.|++|+|||+.++.... ...+.+|...|++++|+|+++ .|++|+.|+++++|+ ..... ......|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeeccccccc-ccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 9999999999998765432 225668999999999999999 899999999999998 44332 344567899999
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCC------------------eeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG------------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+++|+| ++.+|++|+.|++|++||..... .......+...|.+++|+|++++|++++.
T Consensus 146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-- 221 (371)
T d1k8kc_ 146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-- 221 (371)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred cccccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc--
Confidence 999987 66899999999999999976432 23445566778999999999999999985
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC--CeeEEEe---------------
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTST--------------- 623 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~--------------- 623 (945)
|+.|++||+.+++.+..+..|.. .+.+++|+|++.+|++ +.|+.+++|.... +......
T Consensus 222 --d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
T d1k8kc_ 222 --DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297 (371)
T ss_dssp --TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred --CCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence 89999999999999999988876 7899999999876654 5577776665433 2211100
Q ss_pred ----------------------ecCCCCCCccEEEEcCCC----CEEEEEECCCcEEEEECCCCc
Q 002264 624 ----------------------DAEGGLPNLPRLRFSKEG----NLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 624 ----------------------~~~~~~~~v~~v~~sp~g----~~l~~~~~dg~i~iw~~~~~~ 662 (945)
....|.+.|+++++.+.+ ..+++++.||.|++||+++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~ 362 (371)
T d1k8kc_ 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362 (371)
T ss_dssp HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence 000144578899998744 468999999999999997543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2e-33 Score=297.06 Aligned_cols=260 Identities=14% Similarity=0.222 Sum_probs=220.9
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|+++...... ...+|.+.|+|++|+|+|+ +||+|+.||+|+|||+.+++.... ..+.+|.
T Consensus 42 i~~~~~~~~~~-~~~~H~~~v~~~~~sp~g~-~latg~~dg~i~iwd~~~~~~~~~-----------------~~~~~~~ 102 (311)
T d1nr0a1 42 TVPVGSLTDTE-IYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-----------------TTIPVFS 102 (311)
T ss_dssp EEETTCSSCCE-EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-----------------EEEECSS
T ss_pred EEECCCCceeE-EEcCCCCCEEEEEEeCCCC-eEeccccCceEeeeeeeccccccc-----------------ccccccc
Confidence 88887543333 2346999999999999999 599999999999999988765421 2367799
Q ss_pred ccEEEEEEcCCCCEEEEEEC--CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC
Q 002264 407 ISVSRVAWSPDGNYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~ 483 (945)
+.|.+++|+|++++|++++. +..+++|++++++... .+.+|...|++++|+|+++. .|++|+.|+.|++|| .+
T Consensus 103 ~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~---~l~~h~~~v~~v~~~~~~~~-~l~sgs~d~~i~i~d~~~ 178 (311)
T d1nr0a1 103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPP 178 (311)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTT
T ss_pred Cccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccee-eecccccccccccccccc
Confidence 99999999999999999986 4569999999987665 67889999999999999985 688999999999999 88
Q ss_pred CceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec-------CCCCeEEEEEEcCCCCEEEEE
Q 002264 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~ 556 (945)
++....+.+|...|++++|+| +++++++++.|+.|++||+.++.....+. .|...|++++|+|++++|+++
T Consensus 179 ~~~~~~~~~~~~~i~~v~~~p--~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg 256 (311)
T d1nr0a1 179 FKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256 (311)
T ss_dssp BEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccccccccccCc--cccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEE
Confidence 888999999999999999987 66899999999999999999887766543 356689999999999999999
Q ss_pred eecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
+. |+.|++||++++++++++..+.......+.+.++++.+++++.||.|++||.+
T Consensus 257 s~----Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 257 SA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred eC----CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 85 89999999999999999887765344445566667789999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-32 Score=296.22 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=221.7
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
+.+.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+..|..+|.+++|+|++. ++++|+.|+.+++
T Consensus 49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSI 123 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEE
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeec
Confidence 4588999999999999999999999999999999999987665 6778999999999999999 8999999999999
Q ss_pred Ee-CCC----ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 480 WE-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 480 wd-~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
|+ ... .....+.+|........... +..+.....+.....+.................+....+.+.+..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence 99 332 34567778888777666543 25788899999999999888877777778888899999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+++. ++.|++||+++++.+..+.+|.. .+.+++|+|++++|++|+.||.|++|++........+....+...|.+
T Consensus 201 ~~~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (340)
T d1tbga_ 201 SGAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp EEET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred Eeec----CceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence 9885 89999999999999999999877 899999999999999999999999999999998888877666678999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++|+|++++|++|+.||.|++||+.++
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~ 302 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCC
Confidence 999999999999999999999999766
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7e-33 Score=292.19 Aligned_cols=288 Identities=9% Similarity=0.099 Sum_probs=224.5
Q ss_pred EEe-ecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcC
Q 002264 338 AVS-LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (945)
Q Consensus 338 ~~~-~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~ 416 (945)
.++ .+|.+.|+|++|+|+|+ +||||+.||+|++||+.+++.... ...+|...|++++|+|
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~~~ 65 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKTTS 65 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEECT
T ss_pred ceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEeec
Confidence 344 45999999999999999 599999999999999998876531 2357999999999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCC
Q 002264 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAP 496 (945)
Q Consensus 417 ~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 496 (945)
+|+++ +++.|+.+++|+...............|...+.+++|++++. ++++++ ++.+++|+.. +..... ....
T Consensus 66 ~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~-~~~~~~--~~~~ 138 (299)
T d1nr0a2 66 KGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG-KLTEVP--ISYN 138 (299)
T ss_dssp TSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT-EEEEEE--CSSC
T ss_pred cceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-cccccccccc-cccccc--cccc
Confidence 99755 566799999999876543322223446788899999999998 555554 6789999932 222222 3345
Q ss_pred EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE-EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
+.+++|+| ++.++++|+.||.|++||+++..... ....+...|.+++|+|+++++++++. ++.|++||+.++.
T Consensus 139 ~~~~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~ 212 (299)
T d1nr0a2 139 SSCVALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANNF 212 (299)
T ss_dssp EEEEEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGTT
T ss_pred cccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccc
Confidence 78888876 56899999999999999998776543 44567788999999999999999885 8899999998876
Q ss_pred eee---EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC-CCCCccEEEEcCCCCEEEEEECCC
Q 002264 576 IKR---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADN 651 (945)
Q Consensus 576 ~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~l~~~~~dg 651 (945)
... .+.+|.. .+.+++|+|++++|++|+.||.|++||++++.......... +...|.++.| +++++|++++.|+
T Consensus 213 ~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~ 290 (299)
T d1nr0a2 213 ELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDS 290 (299)
T ss_dssp EESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTS
T ss_pred ccccccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCC
Confidence 554 3445554 79999999999999999999999999998876444333332 2335565654 5678999999999
Q ss_pred cEEEEECC
Q 002264 652 GFKILANA 659 (945)
Q Consensus 652 ~i~iw~~~ 659 (945)
.|++||+.
T Consensus 291 ~i~iWdl~ 298 (299)
T d1nr0a2 291 NIKFWNVP 298 (299)
T ss_dssp CEEEEECC
T ss_pred EEEEEecc
Confidence 99999973
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.7e-33 Score=302.47 Aligned_cols=302 Identities=13% Similarity=0.108 Sum_probs=234.7
Q ss_pred CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc--eeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 538 ~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (945)
..+|++++|+|||++|++++. ++.|++||..+++ .+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~~-~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCCC-CEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 357999999999999999875 8899999998775 5667788877 89999999999999999999999999999
Q ss_pred CCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
++.....+....+...|.+++|+|+++.|++++.|+.|++|+......... .
T Consensus 82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~-~--------------------------- 133 (371)
T d1k8kc_ 82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV-C--------------------------- 133 (371)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-E---------------------------
T ss_pred ccccccccccccccccccccccccccccceeecccCcceeeeeeccccccc-c---------------------------
Confidence 888776666666666899999999999999999999999999865411000 0
Q ss_pred CCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecC
Q 002264 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (945)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 775 (945)
.... ..|...|.+++|+|+
T Consensus 134 ----------------------------------------------------------~~~~---~~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 134 ----------------------------------------------------------KHIK---KPIRSTVLSLDWHPN 152 (371)
T ss_dssp ----------------------------------------------------------EEEC---TTCCSCEEEEEECTT
T ss_pred ----------------------------------------------------------cccc---ccccccccccccccc
Confidence 0001 116778999999999
Q ss_pred CCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCC--CcccccccccCCCcCCceeEEeecCCCceEEecC-CC
Q 002264 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS--SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG 852 (945)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~ 852 (945)
+++|++++.||.+++|+.......... ....|+.. .+.... ... .|...|.+++|+|+|++|++++ |+
T Consensus 153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~--~~~~~v~~~~~s~~g~~l~s~~~d~ 223 (371)
T d1k8kc_ 153 SVLLAAGSCDFKCRIFSAYIKEVEERP------APTPWGSKMPFGELMF-ESS--SSCGWVHGVCFSANGSRVAWVSHDS 223 (371)
T ss_dssp SSEEEEEETTSCEEEEECCCTTTSCCC------CCBTTBSCCCTTCEEE-ECC--CCSSCEEEEEECSSSSEEEEEETTT
T ss_pred ccceeccccCcEEEEEeeccCcccccc------ccccccccccceeeee-ecc--CccCcEEEEEeecccccccccccCC
Confidence 999999999999999997643321111 11112211 111111 122 3888999999999999999998 89
Q ss_pred eEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccc--eEEE---------------------
Q 002264 853 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKS--------------------- 909 (945)
Q Consensus 853 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~--~~~~--------------------- 909 (945)
.|++||+.+++.+..+.+|..+|.+++|+| ++++|++|+ |+.+++|..... ....
T Consensus 224 ~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
T d1k8kc_ 224 TVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 301 (371)
T ss_dssp EEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH
T ss_pred cceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeE
Confidence 999999999999999999999999999999 898888765 777777654321 1100
Q ss_pred ------------------EecCCCcceeEEEecCCc----ceeeeecCCceEEEEec
Q 002264 910 ------------------KLKGHQKRITGLAFSTSL----NILVSSGADAQVTLCVE 944 (945)
Q Consensus 910 ------------------~l~~h~~~V~~l~~s~dg----~~l~s~~~Dg~i~vWdl 944 (945)
....|.+.|+++++.+.+ ..++|+|.||.|+|||+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 302 QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358 (371)
T ss_dssp HHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred ecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence 001388899999998755 35889999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-32 Score=289.38 Aligned_cols=318 Identities=17% Similarity=0.271 Sum_probs=246.8
Q ss_pred cceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEE
Q 002264 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (945)
Q Consensus 443 ~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (945)
....+++|.+.|.+ +++++|+ +|+||+.||+|++|| .+++++..+.+|...|.+++|++ .+|++++.|+.++
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK 80 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence 33478999999865 4667788 899999999999999 89999999999999999999864 4899999999999
Q ss_pred EEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEE
Q 002264 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (945)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 601 (945)
+|+................+...... ...+..+.. ++.+.+|+..+++....+..... . .....+....++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 151 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-A--VRCVQYDGRRVV 151 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-C--EEEEEECSSCEE
T ss_pred ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeecccc-c--ceeeccccceee
Confidence 99998877777666666666655544 345555553 88999999999988777765543 2 233445567899
Q ss_pred EEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcce
Q 002264 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIE 681 (945)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~ 681 (945)
+++.|+.|++||......+..+..+. .....+++++.++++++.||.|++||+..+. .+..+
T Consensus 152 ~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~------------- 213 (342)
T d2ovrb2 152 SGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTL------------- 213 (342)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCC-EEEEE-------------
T ss_pred eecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccce-eeeEe-------------
Confidence 99999999999999999888887653 3556666788999999999999999986541 11000
Q ss_pred eeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCC
Q 002264 682 SVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST 761 (945)
Q Consensus 682 ~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 761 (945)
T Consensus 214 -------------------------------------------------------------------------------- 213 (342)
T d2ovrb2 214 -------------------------------------------------------------------------------- 213 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecC
Q 002264 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (945)
Q Consensus 762 ~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~ 841 (945)
.+ |...+.+++++
T Consensus 214 ----------------------------------------------------------------~~--~~~~v~~~~~~- 226 (342)
T d2ovrb2 214 ----------------------------------------------------------------TG--HQSLTSGMELK- 226 (342)
T ss_dssp ----------------------------------------------------------------CC--CCSCEEEEEEE-
T ss_pred ----------------------------------------------------------------cc--cccceeEEecC-
Confidence 00 33334444443
Q ss_pred CCceEEecC-CCeEEEEeccCceEEEEecC---CCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEec-----
Q 002264 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK----- 912 (945)
Q Consensus 842 dg~~la~~s-d~~i~iwd~~~~~~~~~~~~---h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~----- 912 (945)
++++++++ |+.|++||+...+....+.+ |...+.++.+++ +++++|+.||+|+|||+++++++..+.
T Consensus 227 -~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~ 302 (342)
T d2ovrb2 227 -DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302 (342)
T ss_dssp -TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred -CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCC
Confidence 44677776 77788888777777666664 445566666654 599999999999999999999988773
Q ss_pred CCCcceeEEEecCCcceeeeecCCce----EEEEecC
Q 002264 913 GHQKRITGLAFSTSLNILVSSGADAQ----VTLCVEH 945 (945)
Q Consensus 913 ~h~~~V~~l~~s~dg~~l~s~~~Dg~----i~vWdl~ 945 (945)
+|.+.|++++|+|++.+|++|+.||+ |++||++
T Consensus 303 ~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 57889999999999999999999986 9999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-31 Score=288.22 Aligned_cols=281 Identities=16% Similarity=0.248 Sum_probs=220.5
Q ss_pred EeecCCCcE-EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC
Q 002264 339 VSLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (945)
Q Consensus 339 ~~~~h~~~V-~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~ 417 (945)
.+-+|.+.| +|++| +|+ +||||+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+
T Consensus 7 tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~l~~s~~ 64 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYAHG 64 (355)
T ss_dssp EEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEETT
T ss_pred EECCcCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEECCCCCEEEEEEcCC
Confidence 344698875 66655 577 59999999999999999987663 37889999999999985
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEE-------
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN------- 489 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~------- 489 (945)
.+|++|+.|+.|++|++...+..... ....+...+..+.+.+++. ++++++.|+.|++|| ..+..+..
T Consensus 65 -~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 140 (355)
T d1nexb2 65 -GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 140 (355)
T ss_dssp -TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC-----------CC
T ss_pred -CEEEEEeccccccccccccccccccc-ccccccccccccccccccc--eeeeecCCCcEEEEEccCCceecccccccee
Confidence 58999999999999999887655422 2223445566777888888 899999999999999 54433221
Q ss_pred ----------------ecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEE
Q 002264 490 ----------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (945)
Q Consensus 490 ----------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 553 (945)
...|...+.... + ++.+++++..|+.|++||+.+.+.......+...+.++.+++++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (355)
T d1nexb2 141 PLVFHTPEENPYFVGVLRGHMASVRTVS--G--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216 (355)
T ss_dssp CEEESCTTTCTTEEEEEECCSSCEEEEE--E--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred ccceeccccccceeeeeeeccccccccc--c--ccceeeeecccceeeeeecccccceeeeeccccccccccccccceee
Confidence 122333443332 2 45789999999999999999998888888888899999999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCcc
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (945)
++++. ++.|++||..++..+..+.+|.. .+.+++++ ++++++++.||.|++||++++....... .. .+.
T Consensus 217 ~~~~~----d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~--~~~ 285 (355)
T d1nexb2 217 ISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HT--NLS 285 (355)
T ss_dssp EEEET----TSCEEEEETTTCCEEEEECCCSS-CCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEE--CT--TCC
T ss_pred ecccc----cceEEeeeccccccccccccccc-cccccccc--cceeeeeecccccccccccccceecccc--cC--Cce
Confidence 99885 89999999999999999999877 78888886 4699999999999999999887654443 22 334
Q ss_pred E-EEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 634 R-LRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 634 ~-v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+ ..+++++.++++|+ ||.|++||++++
T Consensus 286 ~~~~~~~~~~~l~~g~-d~~i~vwd~~tg 313 (355)
T d1nexb2 286 AITTFYVSDNILVSGS-ENQFNIYNLRSG 313 (355)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEEEcCCCCEEEEEe-CCEEEEEECCCC
Confidence 4 45677888777665 889999999877
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.4e-32 Score=286.00 Aligned_cols=290 Identities=12% Similarity=0.178 Sum_probs=220.5
Q ss_pred CceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcE
Q 002264 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (945)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i 653 (945)
|+..+.+.||.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+.. .|...|.+++|+|+|.++ +++.|+.+
T Consensus 2 g~~~~~~~GH~~-~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~h~~~v~~v~~~~~g~~~-~~~~d~~v 78 (299)
T d1nr0a2 2 GSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-VHATMITGIKTTSKGDLF-TVSWDDHL 78 (299)
T ss_dssp TEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-SCSSCEEEEEECTTSCEE-EEETTTEE
T ss_pred CccceEcCCCCC-CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCCcEEEEEeeccceee-cccceeeE
Confidence 567788999987 899999999999999999999999999999998877643 345589999999999754 56678999
Q ss_pred EEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccC
Q 002264 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (945)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (945)
++|+...... ...... .......+..++++++|+.++ ++
T Consensus 79 ~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~s~~g~~~~--------------------------------------~~ 117 (299)
T d1nr0a2 79 KVVPAGGSGV--DSSKAV-ANKLSSQPLGLAVSADGDIAV--------------------------------------AA 117 (299)
T ss_dssp EEECSSSSSS--CTTSCC-EEECSSCEEEEEECTTSSCEE--------------------------------------EE
T ss_pred EEeccCCccc--cccccc-ccccccccccccccccccccc--------------------------------------cc
Confidence 9999865421 111111 112334567788888887653 22
Q ss_pred CCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccc
Q 002264 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (945)
Q Consensus 734 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (945)
.++.+++|+.... .... ....+.+++|+|+++.+++++.||.+++||+....
T Consensus 118 ~~~~i~~~~~~~~------~~~~------~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~---------------- 169 (299)
T d1nr0a2 118 CYKHIAIYSHGKL------TEVP------ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS---------------- 169 (299)
T ss_dssp ESSEEEEEETTEE------EEEE------CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE----------------
T ss_pred ccccccccccccc------cccc------ccccccccccccccccccccccccccccccccccc----------------
Confidence 3367788875421 1111 33467889999999999999999999999874321
Q ss_pred cCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEE---EecCCCCCeeEEEeecCCCceEE
Q 002264 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMT---TFMSPPPASTFLAFHPQDNNIIA 889 (945)
Q Consensus 814 ~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~---~~~~h~~~i~~l~~s~~~~~~la 889 (945)
........ |...|++++|+|+++++++++ ++.|++||+.++.... .+.+|...|++++|+| ++++|+
T Consensus 170 ------~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~ 240 (299)
T d1nr0a2 170 ------VSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLA 240 (299)
T ss_dssp ------EEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEE
T ss_pred ------cccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccceE
Confidence 11111222 788999999999999999998 8999999998876543 4567899999999999 899999
Q ss_pred EeecCceEEEEecccceE--EEEecCC-CcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 890 IGTEDSTIHIYNVRVDEV--KSKLKGH-QKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 890 sg~~dg~v~vwd~~~~~~--~~~l~~h-~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+|+.||.|++||+.++.. +.....| ...|.++. ++++.+|+|++.|++|++||++
T Consensus 241 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred EEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence 999999999999987643 3333344 44566665 4567899999999999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-30 Score=279.31 Aligned_cols=308 Identities=16% Similarity=0.231 Sum_probs=243.2
Q ss_pred eecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCC
Q 002264 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (945)
Q Consensus 340 ~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~ 419 (945)
+-+|.+.|.+ +++++|+ +||||+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+
T Consensus 12 l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~-------------------~~~~h~~~V~~v~~~~~-- 68 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMRDN-- 68 (342)
T ss_dssp EECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEETT--
T ss_pred ECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCCEEEEEeCCC--
Confidence 4469999865 4777888 49999999999999999988763 37889999999999875
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEE
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~ 498 (945)
+|++|+.|+.+++|+........ ....+...+....+.+ . .+..+..|+.+.+|+ .+++....+..+.....
T Consensus 69 ~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
T d2ovrb2 69 IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141 (342)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecccccce
Confidence 99999999999999998765443 3344555666665554 3 678889999999999 78877777765555444
Q ss_pred EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceee
Q 002264 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (945)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~ 578 (945)
... . ....+++++.|+.|++||.........+..+...+..+ ++++.++++++. ++.|++||++.++.+.
T Consensus 142 ~~~--~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~----dg~i~~~d~~~~~~~~ 211 (342)
T d2ovrb2 142 CVQ--Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSL----DTSIRVWDVETGNCIH 211 (342)
T ss_dssp EEE--E--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred eec--c--ccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeC----CCeEEEeecccceeee
Confidence 332 2 33678999999999999999888888887777665554 457889999885 8999999999999999
Q ss_pred EeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC-CCCCccEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (945)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~ 657 (945)
.+.+|.. .+.+++++ +++|++++.||.|++||+...+....+..+. +...+.++.+ +++++++|+.||.|++||
T Consensus 212 ~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd 286 (342)
T d2ovrb2 212 TLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWD 286 (342)
T ss_dssp EECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEE
T ss_pred Eeccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEE
Confidence 9998876 67766665 5699999999999999999988887776543 3334455555 567999999999999999
Q ss_pred CCCCccccccccCCccccccCcceeeeeccccccee
Q 002264 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (945)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 693 (945)
++++ +.++.+.......+...|.+++|+|++..++
T Consensus 287 ~~tg-~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la 321 (342)
T d2ovrb2 287 LKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCA 321 (342)
T ss_dssp TTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred CCCC-CEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence 9998 5555555444455667899999999988775
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-31 Score=281.03 Aligned_cols=287 Identities=12% Similarity=0.201 Sum_probs=223.1
Q ss_pred cEEEEEEeCCCCeEEEEEeCc-CcEEEEEcCCCCcccccccccccccccCcccccccccCC-CccEEEEEEcC--CCCEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSN-GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSP--DGNYV 421 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~s~--~g~~l 421 (945)
.+++++|+|+|+. ||.++.+ ..|+.|+....+... ...+.+| ...|++++|+| +|.+|
T Consensus 19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~l 80 (325)
T d1pgua1 19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQYL 80 (325)
T ss_dssp CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCEE
T ss_pred CeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCCEE
Confidence 6789999999996 6666533 234555543322211 1225566 56899999998 67899
Q ss_pred EEEECCCcEEEEEccCCcccccc-----eeeccccccEEEEEEecCCCeeEEEEE--eCCCcEEEEe-CCCceEEEecCC
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~-----~~~~~h~~~v~~l~~s~~~~~~~l~s~--s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
|+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++ +++++ +.++.+++|+ .+++.+..+.+|
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 158 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSGNSLGEVSGH 158 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC--ccceeeccccceEEEEeecccccceeeeec
Confidence 99999999999999876554322 13456889999999999999 45544 4578899999 889999999999
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec---CCCCeEEEEEEcCC-CCEEEEEeecCCCCceEEEE
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~-~~~l~~~~~~~d~~~~i~iw 569 (945)
...|.+++|++..+ .++++++.|+.+++||+...+...... .+...|.+++|+|+ +.++++++. |+.|++|
T Consensus 159 ~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iw 233 (325)
T d1pgua1 159 SQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCF 233 (325)
T ss_dssp SSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEE
T ss_pred cccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeee
Confidence 99999999987643 468889999999999988766655443 34567999999997 577777775 8999999
Q ss_pred eCCCCceeeEeccccCcceEEEEEc---CCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCC-CCEEE
Q 002264 570 NESEGTIKRTYAGFRKKSNGVVQFD---TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-GNLLA 645 (945)
Q Consensus 570 d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~l~ 645 (945)
|+++++.+..+.+|.. .+..+.|+ +++++|++++.|+.|++||+++++++..+..+.+...+..+++.+. +.+|+
T Consensus 234 d~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (325)
T d1pgua1 234 DGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312 (325)
T ss_dssp ETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred eecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence 9999999999988776 44333333 6789999999999999999999999999887776444555555543 35889
Q ss_pred EEECCCcEEEEEC
Q 002264 646 VTTADNGFKILAN 658 (945)
Q Consensus 646 ~~~~dg~i~iw~~ 658 (945)
+++.||.|++||+
T Consensus 313 s~s~dg~i~vwdl 325 (325)
T d1pgua1 313 SLSLDGTLNFYEL 325 (325)
T ss_dssp EEETTSCEEEEET
T ss_pred EEECCCEEEEEEC
Confidence 9999999999986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.4e-29 Score=267.85 Aligned_cols=286 Identities=15% Similarity=0.147 Sum_probs=215.3
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC--ceeeEeccccCcceEEEEEcC--CCCEEEEEECCCcEEEEECC
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMD 615 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 615 (945)
.+++++|+|+++.|++++. ....|+.||.... .....+.+|....+++++|+| ++.+|++|+.||+|++||+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~---~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCG---KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 95 (325)
T ss_dssp CCCCCEEETTTTEEEEEET---TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeC---CCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence 4678899999999998762 1334566765443 446677888776899999998 56799999999999999987
Q ss_pred CCeeEEEee------cCCCCCCccEEEEcCCCCEEEEEEC--CCcEEEEECCCCccccccccCCccccccCcceeeeecc
Q 002264 616 NVNILTSTD------AEGGLPNLPRLRFSKEGNLLAVTTA--DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (945)
Q Consensus 616 ~~~~~~~~~------~~~~~~~v~~v~~sp~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~ 687 (945)
.+.....+. ...+..+|.+++|+++|+++++++. ++.+.+|+..++. .+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~------------------- 155 (325)
T d1pgua1 96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEV------------------- 155 (325)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEEC-------------------
T ss_pred CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc-cceee-------------------
Confidence 644222111 1233458999999999999988765 5678899887651 11111
Q ss_pred cccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccce
Q 002264 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (945)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 767 (945)
. +|...|
T Consensus 156 ----------------------------------------------------------------------~---~h~~~v 162 (325)
T d1pgua1 156 ----------------------------------------------------------------------S---GHSQRI 162 (325)
T ss_dssp ----------------------------------------------------------------------C---SCSSCE
T ss_pred ----------------------------------------------------------------------e---eccccc
Confidence 1 167788
Q ss_pred EEEEEecCCCe-EEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCC-Cce
Q 002264 768 VRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-DSY 845 (945)
Q Consensus 768 ~~l~~s~dg~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d-g~~ 845 (945)
.+++|+|++.. +++++.||.+++|++.... .... .....+ |...|++++|+|| +.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~------~~~~--------------~~~~~~--~~~~v~~v~~~pd~~~~ 220 (325)
T d1pgua1 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFK------FSAS--------------DRTHHK--QGSFVRDVEFSPDSGEF 220 (325)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBE------EEEE--------------ECSSSC--TTCCEEEEEECSTTCCE
T ss_pred ccccccccccceEEEeecccccccccccccc------ccee--------------cccccC--CCCccEEeeecccccee
Confidence 99999999876 5677889999999853211 1100 001222 7888999999997 678
Q ss_pred EEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEee---cCCCceEEEeecCceEEEEecccceEEEEecCCCcc--ee
Q 002264 846 VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH---PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR--IT 919 (945)
Q Consensus 846 la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s---~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~--V~ 919 (945)
+++++ |+.|++||+.+++.+.++.+|...+.++.|+ | ++++|++|+.|+.|+|||+++++++..+..|... +.
T Consensus 221 l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (325)
T d1pgua1 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ 299 (325)
T ss_dssp EEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred ccccccccceeeeeeccccccccccccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCe
Confidence 88887 8999999999999999999999888777776 6 7889999999999999999999999887765543 44
Q ss_pred EEEecCCc-ceeeeecCCceEEEEec
Q 002264 920 GLAFSTSL-NILVSSGADAQVTLCVE 944 (945)
Q Consensus 920 ~l~~s~dg-~~l~s~~~Dg~i~vWdl 944 (945)
.+++.+.+ .+|+|+|.||+|++||+
T Consensus 300 ~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 300 QVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCCEEEEEECCCEEEEEEC
Confidence 55555433 47899999999999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=1.3e-27 Score=263.63 Aligned_cols=377 Identities=10% Similarity=0.024 Sum_probs=269.3
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCC
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~ 438 (945)
++++.+.||+|.|||..+++.+.. +..| ..+..++|||||+++++++.|+.|++||+.++
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~ 93 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence 468889999999999999988743 4444 36999999999999999999999999999887
Q ss_pred ccc--ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE
Q 002264 439 NDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (945)
Q Consensus 439 ~~~--~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (945)
+.. ..+....+|.+.+.+.+|+|||+. ++++++.+++|++|| .+++.+..+..+...+....+.+.+
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~--------- 163 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP--------- 163 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC---------
T ss_pred CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC---------
Confidence 643 223334467778888889999995 457888999999999 8899888887776544433333321
Q ss_pred cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
....+.++|+|..++.... .++.+.+||..+++...............++|+|
T Consensus 164 ------------------------~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp 216 (432)
T d1qksa2 164 ------------------------RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216 (432)
T ss_dssp ------------------------CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred ------------------------ceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence 2334668899988776653 3788999999887765544433344678899999
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCeeEEEeecCC---CCCCccEEEEcCCCCEEEEEE-CCCcEEEEECCCCccccccccC
Q 002264 596 TQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEG---GLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 596 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
+|+++++++ .++.+.++|..+++.+..+.... +........+...+...++.. .++.|.+|......
T Consensus 217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-------- 288 (432)
T d1qksa2 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-------- 288 (432)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------
T ss_pred CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc--------
Confidence 999988877 46679999999998887775432 112223334443444444332 25566666543220
Q ss_pred CccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCC
Q 002264 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (945)
Q Consensus 671 ~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 750 (945)
T Consensus 289 -------------------------------------------------------------------------------- 288 (432)
T d1qksa2 289 -------------------------------------------------------------------------------- 288 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCc
Q 002264 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (945)
Q Consensus 751 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 830 (945)
.+ .+...+...+++|++..+++++.++..++|..... .. |
T Consensus 289 ------~~---~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-----------------------------~~--~ 328 (432)
T d1qksa2 289 ------HP---DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL-----------------------------NP--E 328 (432)
T ss_dssp ------CT---TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT-----------------------------CS--S
T ss_pred ------cc---ccccEEEEEEEcCCCCeEEEEecCCccceeecccC-----------------------------CC--C
Confidence 00 14445677788888888888888888888863210 01 3
Q ss_pred CCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEee-----cCceEEEEeccc
Q 002264 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-----EDSTIHIYNVRV 904 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~-----~dg~v~vwd~~~ 904 (945)
.....++++ ||++.+++++ |+.+++|++.++.. +..|...+.+++||| ||++|+++. .+|.|.|||..+
T Consensus 329 ~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T 403 (432)
T d1qksa2 329 AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKT 403 (432)
T ss_dssp HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCeeeEEEE-EechhhcccccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCC
Confidence 334455665 9999999999 78899999876633 335677899999999 887775543 468899999999
Q ss_pred ceEEEEecCCCcceeEEEecCCcceee
Q 002264 905 DEVKSKLKGHQKRITGLAFSTSLNILV 931 (945)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~dg~~l~ 931 (945)
+++...+++.. .++|+|++-+
T Consensus 404 ~k~~~~i~~~~------~~tp~G~~~~ 424 (432)
T d1qksa2 404 LELKHVIKDER------LVTPTGKFNV 424 (432)
T ss_dssp TEEEEEECCTT------CCSEEEEEEH
T ss_pred ceEEeEecCCC------ccCCCeeEEE
Confidence 99988887642 3467776643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-26 Score=242.40 Aligned_cols=268 Identities=19% Similarity=0.268 Sum_probs=215.2
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
+|...|+|++ +||+ +||||+.||+|+|||+.+++.+. .+.+|.+.|++++| ++++|
T Consensus 13 ~~~~~V~c~~--~d~~-~l~sgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~v~~--~~~~l 68 (293)
T d1p22a2 13 ETSKGVYCLQ--YDDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 68 (293)
T ss_dssp SSCCCEEEEE--CCSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCCEEEEE--EcCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEecCCCCEeeeec--cccee
Confidence 4788999975 4788 59999999999999999887763 37889999999987 67899
Q ss_pred EEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc---eEEEecCCCCCE
Q 002264 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPV 497 (945)
Q Consensus 422 as~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~---~~~~~~~~~~~v 497 (945)
++|+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+|+ .... ....+..|...+
T Consensus 69 ~s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (293)
T d1p22a2 69 ITGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141 (293)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred ecccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeecccccccccccccccccccc
Confidence 999999999999999876544 2222322 2334555556 789999999999999 4433 345667788888
Q ss_pred EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee
Q 002264 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (945)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~ 577 (945)
..+.+.+ ..+++++.|+.|++||+++.+....+..+...+..+.++ +..+++++. ++.|++||+++...+
T Consensus 142 ~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 142 NVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACL 211 (293)
T ss_dssp EEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEE
T ss_pred ccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceee
Confidence 8877643 578899999999999999999988888888888887765 567888875 899999999999999
Q ss_pred eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC---------CeeEEEeecCCCCCCccEEEEcCCCCEEEEEE
Q 002264 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN---------VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (945)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~ 648 (945)
..+.++.. .+. .+++++.+|++++.||.|++||+.+ ...+..+..|. ..|.+++|+ +.+|++++
T Consensus 212 ~~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~~~l~s~s 284 (293)
T d1p22a2 212 RVLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--EFQIVSSS 284 (293)
T ss_dssp EEECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--SSCEEECC
T ss_pred eeecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEc--CCEEEEEe
Confidence 98888765 444 4667789999999999999999753 33566666554 489999994 56899999
Q ss_pred CCCcEEEEE
Q 002264 649 ADNGFKILA 657 (945)
Q Consensus 649 ~dg~i~iw~ 657 (945)
.||+|++||
T Consensus 285 ~Dg~i~iWD 293 (293)
T d1p22a2 285 HDDTILIWD 293 (293)
T ss_dssp SSSEEEEEC
T ss_pred cCCEEEEeC
Confidence 999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1e-27 Score=250.46 Aligned_cols=278 Identities=13% Similarity=0.110 Sum_probs=215.7
Q ss_pred ceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEE
Q 002264 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (945)
Q Consensus 444 ~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (945)
++++.+|.++|++++|+| |+||+.||+|++||... ...+|...|.++++.+ + ..+++++.|+++++|
T Consensus 6 i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~--~-~~~~s~s~D~~v~~w 72 (287)
T d1pgua2 6 LKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSK--A-QEYSSISWDDTLKVN 72 (287)
T ss_dssp EEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTE----EECCCCSCEEEEECCS--T-TCCEEEETTTEEEET
T ss_pred eEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCC----CCCCCCCCEEEEEecC--C-CeEEEEeeccccccc
Confidence 347899999999999975 79999999999999322 2358999999999864 2 468999999999999
Q ss_pred EccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEE
Q 002264 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (945)
++... .....+..+.+++++..++++. +..+.+|+..+++.+..+.... ...++++++..++++
T Consensus 73 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~ 136 (287)
T d1pgua2 73 GITKH-------EFGSQPKVASANNDGFTAVLTN-----DDDLLILQSFTGDIIKSVRLNS----PGSAVSLSQNYVAVG 136 (287)
T ss_dssp TEEEE-------ECSSCEEEEEECSSSEEEEEET-----TSEEEEEETTTCCEEEEEECSS----CEEEEEECSSEEEEE
T ss_pred ccccc-------ccccceeeeeeccCCceEEEee-----cccceeeeccceeeeeeccccc----eeeeeeccCcceeee
Confidence 87532 1234577888999988887765 6679999999998888776543 235677788889888
Q ss_pred ECCC-cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCccee
Q 002264 604 GEDS-QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIES 682 (945)
Q Consensus 604 ~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~ 682 (945)
+.++ .+++|++........+... +...+.+++|+|++.+|++|+.||.|++||+.++......
T Consensus 137 ~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--------------- 200 (287)
T d1pgua2 137 LEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR--------------- 200 (287)
T ss_dssp ETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC---------------
T ss_pred ccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccccccccccccccceeeccccccccc---------------
Confidence 8765 6999999877666555432 3447999999999999999999999999999765211100
Q ss_pred eeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCC
Q 002264 683 VALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762 (945)
Q Consensus 683 v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 762 (945)
+ .+
T Consensus 201 --------------------------------------------------------------------------~---~~ 203 (287)
T d1pgua2 201 --------------------------------------------------------------------------W---AF 203 (287)
T ss_dssp --------------------------------------------------------------------------S---CC
T ss_pred --------------------------------------------------------------------------c---cc
Confidence 0 11
Q ss_pred CccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCC
Q 002264 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (945)
Q Consensus 763 ~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d 842 (945)
|...|.+++|+|++... ..+.++
T Consensus 204 h~~~v~~~~~~p~~~~~---------------------------------------------------------~~~~~~ 226 (287)
T d1pgua2 204 RTSKINAISWKPAEKGA---------------------------------------------------------NEEEIE 226 (287)
T ss_dssp CSSCEEEEEECCCC---------------------------------------------------------------CCS
T ss_pred cccccceeeeccccccc---------------------------------------------------------ccccCC
Confidence 66778888888876421 123457
Q ss_pred CceEEecC-CCeEEEEeccC-ceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEec
Q 002264 843 DSYVMSAT-GGKISLFNMMT-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (945)
Q Consensus 843 g~~la~~s-d~~i~iwd~~~-~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~ 902 (945)
+.++|+|+ |++|+|||+.+ .+.+..+.+|.+.|++++|+| ++ .|++++.||.|++|++
T Consensus 227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 78899998 89999999876 567788889999999999999 76 5788999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.7e-27 Score=244.80 Aligned_cols=267 Identities=10% Similarity=0.132 Sum_probs=208.1
Q ss_pred ceEEeec-CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 336 ~~~~~~~-h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
++++++. |.++|++++|+| |+||+.||+|++||+.++. .+|...|.+++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~------------------------~~h~~~V~~~~~ 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH------------------------QDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE------------------------CCCCSCEEEEEC
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC------------------------CCCCCCEEEEEe
Confidence 3455655 999999999987 7999999999999986542 358999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC
Q 002264 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (945)
Q Consensus 415 s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~ 493 (945)
++++ .+++++.|++|++|++...+ ....+..+++++++. .++++ .++.+.+|+ .+++.+..+..+
T Consensus 55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 120 (287)
T d1pgua2 55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVLT-NDDDLLILQSFTGDIIKSVRLN 120 (287)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEEE-TTSEEEEEETTTCCEEEEEECS
T ss_pred cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEEe-ecccceeeeccceeeeeecccc
Confidence 9765 57889999999999975421 234577888998886 55554 466788898 888888777643
Q ss_pred CCCEEEEEeeecCCccEEEEEEcC-CeEEEEEccCCCeeEEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~ 571 (945)
..+.++ ++. +..+++++.+ +.+++|++........+.. +...+++++|+|++.+|++++. ++.|++||+
T Consensus 121 -~~~~~~--~~~--~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~ 191 (287)
T d1pgua2 121 -SPGSAV--SLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL 191 (287)
T ss_dssp -SCEEEE--EEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred -ceeeee--ecc--CcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence 344444 443 3566677666 5799999876655555443 5568999999999999999985 899999999
Q ss_pred CCCceeeE-eccccCcceEEEEEcCC----------CCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcC
Q 002264 572 SEGTIKRT-YAGFRKKSNGVVQFDTT----------QNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 572 ~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
.+++.... +.+|.. .+.+++|+|. +.++++|+.|+.|++||+++ ++.+..+..| ...|++++|+|
T Consensus 192 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~~~ 268 (287)
T d1pgua2 192 QSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLWET 268 (287)
T ss_dssp TTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEEEE
T ss_pred ccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEECC
Confidence 99887654 455555 7999999874 46899999999999999976 5556655554 45899999999
Q ss_pred CCCEEEEEECCCcEEEEEC
Q 002264 640 EGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~ 658 (945)
++ .+++++.|+.|++|++
T Consensus 269 ~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 269 PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TT-EEEEEETTSCEEEEEE
T ss_pred CC-EEEEEECCCeEEEEEE
Confidence 86 5889999999999986
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.9e-26 Score=252.57 Aligned_cols=283 Identities=9% Similarity=0.071 Sum_probs=204.9
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccc---cceeeccccccEEEEEE---ec-CC-CeeEEEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR---QHSQIDAHVGAVNDLAF---AY-PN-KLLCVVTC 471 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~---~~~~~~~h~~~v~~l~~---s~-~~-~~~~l~s~ 471 (945)
...++|.+.|.++++++ ++|++|+.|++|+|||..+.+... .......|...+..+.. .+ ++ ...+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 34678999999999874 699999999999999987654321 11122234444333322 11 11 11267899
Q ss_pred eCCCcEEEEe-CCCce---E--EEe-----cCCCCCEEEEEeeecCC---ccEEEEEEcCCeEEEEEccCCCe-------
Q 002264 472 GDDKLIKVWE-LSGRK---L--FNF-----EGHEAPVYSICPHHKEN---IQFIFSTAIDGKIKAWLYDTMGS------- 530 (945)
Q Consensus 472 s~d~~i~vwd-~~~~~---~--~~~-----~~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~------- 530 (945)
+.||.|++|+ ..+.. . ... ..+...+..+++.+..+ +.++++++.||.+++|++.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 9999999998 32221 1 111 12445677777766432 47899999999999999853211
Q ss_pred -----------eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec------cccCcceEEEEE
Q 002264 531 -----------RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA------GFRKKSNGVVQF 593 (945)
Q Consensus 531 -----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~ 593 (945)
......+...+.+++|+|++ +|++++. |+.|++||+.+++.+..+. +|.. .|.+++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~ 239 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKF 239 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEE
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccc-eEEEccc
Confidence 00112234468899999998 7777775 9999999999998876554 4444 7999999
Q ss_pred cCCCCEEEEEECCCc---EEEEECCCCeeEEEeecC-----------CCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 594 DTTQNHFLAVGEDSQ---IKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 594 ~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
+|++++|++|+.|+. |++||+.+++.+..+... +|...|++++|+|++++|++++.|++|++||+.
T Consensus 240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence 999999999998874 899999999988877532 455689999999999999999999999999999
Q ss_pred CCccccccccCCccccccCcceeeeecccccce
Q 002264 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (945)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l 692 (945)
++ +++.++.+|..... .....++|+++|..+
T Consensus 320 ~g-~~~~~l~gH~~~v~-~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 320 TK-ERITTLNMHCDDIE-IEEDILAVDEHGDSL 350 (393)
T ss_dssp TT-EEEEEEECCGGGCS-SGGGCCCBCTTSCBC
T ss_pred CC-CEEEEECCcCCccc-CCccEEEECCCCCEE
Confidence 98 78888888876543 123456777777655
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.3e-27 Score=250.45 Aligned_cols=286 Identities=12% Similarity=0.119 Sum_probs=207.6
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCC-CCE
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNY 420 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-g~~ 420 (945)
+|.+.|++|+|+|+|+ +||+|+.||+|+|||+.++..... .....+|.++|.+++|+|+ +.+
T Consensus 9 ~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~----------------~~~~~~h~~~V~~v~f~~~~~~~ 71 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceE----------------EEEecCCCCCEEEEEEeCCCCCE
Confidence 4999999999999999 599999999999999987654321 0113469999999999986 558
Q ss_pred EEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCc----eEEEecCCCC
Q 002264 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR----KLFNFEGHEA 495 (945)
Q Consensus 421 las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~----~~~~~~~~~~ 495 (945)
|++|+.||.|++|++..+...... ...+........+.+++. .+++++.|+++++|| ..+. .......+..
T Consensus 72 l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 72 IYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred EEEcccccceeeeecccccccccc--cccccccccccccccccc--cccccccccccceeeccccccceeeecccccccc
Confidence 999999999999999887655421 223334445556666677 899999999999999 3322 2223333322
Q ss_pred --CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE---EecCCCCeEEEEEEcC-CCCEEEEEeecCCCCceEEEE
Q 002264 496 --PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEW 569 (945)
Q Consensus 496 --~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~-~~~~l~~~~~~~d~~~~i~iw 569 (945)
......+.+ ++..+++++.|+.|++||+....... ........+.+..+.+ ++..+++++. ++.+.+|
T Consensus 148 ~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~~v~ 221 (342)
T d1yfqa_ 148 KVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DGRVAVE 221 (342)
T ss_dssp SSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TSEEEEE
T ss_pred cceeeeeeeec--cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----CCeEEEE
Confidence 233344444 45789999999999999998765433 2223334455555544 6667777775 8899999
Q ss_pred eCCCCceee------Ee---------ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccE
Q 002264 570 NESEGTIKR------TY---------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (945)
Q Consensus 570 d~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (945)
+........ .+ .++. ..+.+++|+|++++|++|+.||.|++||+.+++.+..+..+. .+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~ 297 (342)
T d1yfqa_ 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSV 297 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SSEE
T ss_pred EecCCcceeeccccceeeeeeeccCCCccc-ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---CCEE
Confidence 876432111 11 1222 257889999999999999999999999999999988775432 5577
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEC
Q 002264 635 LRFSKEGNLLAVTTADNGFKILAN 658 (945)
Q Consensus 635 v~~sp~g~~l~~~~~dg~i~iw~~ 658 (945)
++|+|+|+++++++.|+.+++|..
T Consensus 298 ~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 298 VKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECSSEEEEEEECTHHHHCSS
T ss_pred EEEEeCCCEEEEEEcCCcEEEeee
Confidence 889999999999999988877754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.9e-27 Score=250.14 Aligned_cols=282 Identities=11% Similarity=-0.000 Sum_probs=204.3
Q ss_pred ccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 400 ~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
.+.++|++.|++|+|+|++++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. +|++|+.|+.|++
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~ 83 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILK 83 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEE
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceee
Confidence 357889999999999999999999999999999999887654443344579999999999998665 7999999999999
Q ss_pred Ee-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe----cCC--CCeEEEEEEcCCCCE
Q 002264 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY----DAP--GHWCTTMLYSADGSR 552 (945)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~--~~~i~~~~~s~~~~~ 552 (945)
|+ ..+........+........+.+. +...+++++.++.+++||++........ ..+ ........+.+++..
T Consensus 84 w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (342)
T d1yfqa_ 84 VDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred eeccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence 99 666666666555544433333322 4478999999999999998754433221 111 223455667788888
Q ss_pred EEEEeecCCCCceEEEEeCCCCceeeEe---ccccCcceEEE-EEcCCCCEEEEEECCCcEEEEECCCCeeE------EE
Q 002264 553 LFSCGTSKDGDSFLVEWNESEGTIKRTY---AGFRKKSNGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNIL------TS 622 (945)
Q Consensus 553 l~~~~~~~d~~~~i~iwd~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~ 622 (945)
+++++. ++.|++||+......... ..... ...+. .+..++..+++++.||.+.+|+....... ..
T Consensus 163 ~~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~ 237 (342)
T d1yfqa_ 163 LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred eeeecC----CCcEEEEecccCcccceeeeeccccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce
Confidence 988885 899999999876543322 22222 33344 44556789999999999999998653211 11
Q ss_pred e-------ecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceecc
Q 002264 623 T-------DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (945)
Q Consensus 623 ~-------~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~ 695 (945)
+ ....+...|++++|+|++++||+|+.||.|++||+.++ +.+..+..+ .....++|+|+|+.++++
T Consensus 238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~-~~l~~~~~~------~~~~~~~~s~~~~~l~~a 310 (342)
T d1yfqa_ 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKNFAKF------NEDSVVKIACSDNILCLA 310 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCC------SSSEEEEEEECSSEEEEE
T ss_pred eeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC-cEEEEecCC------CCCEEEEEEeCCCEEEEE
Confidence 1 11233446889999999999999999999999999988 444444332 234567888888877543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=9e-27 Score=257.95 Aligned_cols=363 Identities=8% Similarity=0.007 Sum_probs=241.8
Q ss_pred EeCCCCe-EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCCcE
Q 002264 352 FHPSHQT-LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (945)
Q Consensus 352 fsp~g~~-llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i 430 (945)
+++|.+. ++++.+.||+|+|||+.+++.+.. +..| ..+..++|||||++|++++.|++|
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v 85 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDARI 85 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCCE
Confidence 4455443 457788899999999999987742 4445 468999999999999999999999
Q ss_pred EEEEccCCcccc--cceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCC
Q 002264 431 QLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKEN 507 (945)
Q Consensus 431 ~vwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~ 507 (945)
++||+.+++... .+....+|...+.+++|+|||+. +++++..++.+++|| ..+..+..+..|...+....+.+.+.
T Consensus 86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (426)
T d1hzua2 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164 (426)
T ss_dssp EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc
Confidence 999999887532 22234467788888999999995 456667899999999 88888888888877766666654332
Q ss_pred ccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeE-eccccCc
Q 002264 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKK 586 (945)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~-~~~~~~~ 586 (945)
...++.+.|+...++ ... +.+.+.+++...+..... ...+ ..
T Consensus 165 -~~~i~~s~d~~~~~~--------------------------------~~~---~~~~i~~~~~~~~~~~~~~~~~~-~~ 207 (426)
T d1hzua2 165 -VAAIIASHEHPEFIV--------------------------------NVK---ETGKVLLVNYKDIDNLTVTSIGA-AP 207 (426)
T ss_dssp -EEEEEECSSSSEEEE--------------------------------EET---TTTEEEEEECSSSSSCEEEEEEC-CS
T ss_pred -eeEEEECCCCCEEEE--------------------------------ecC---CCCeEEEEEeccccceeeEEecc-CC
Confidence 233344444443333 221 133444444444332221 1122 23
Q ss_pred ceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCE-EE--EEECCCcEEEEECCCCc
Q 002264 587 SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL-LA--VTTADNGFKILANAIGL 662 (945)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~-l~--~~~~dg~i~iw~~~~~~ 662 (945)
.+..+.++|++++++++. .+..+.+++..+++.+................+...+.. +. ..+.|+.+.+|+....
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~- 286 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK- 286 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT-
T ss_pred ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc-
Confidence 678899999999988877 566799999999999888876544333444444333221 11 1123445555443321
Q ss_pred cccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccc
Q 002264 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (945)
Q Consensus 663 ~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (945)
.+.+|+
T Consensus 287 --------------------------------------------------------------------------~~~~~~ 292 (426)
T d1hzua2 287 --------------------------------------------------------------------------NHPQYA 292 (426)
T ss_dssp --------------------------------------------------------------------------TCTTTB
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 001110
Q ss_pred cceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccc
Q 002264 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (945)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (945)
.. ..
T Consensus 293 ~~---------------------------------------------------------------------------~~- 296 (426)
T d1hzua2 293 WK---------------------------------------------------------------------------KV- 296 (426)
T ss_dssp TS---------------------------------------------------------------------------EE-
T ss_pred ce---------------------------------------------------------------------------Ee-
Confidence 00 00
Q ss_pred ccccCCCcCCceeEEeecCCCceEEe-------cC-CCeEEEEeccCceEEEEe---------cCCCCCeeEEEeecCCC
Q 002264 823 NDVAGVNLEEAVPCIALSKNDSYVMS-------AT-GGKISLFNMMTFKVMTTF---------MSPPPASTFLAFHPQDN 885 (945)
Q Consensus 823 ~~l~~~~~~~~i~~l~~s~dg~~la~-------~s-d~~i~iwd~~~~~~~~~~---------~~h~~~i~~l~~s~~~~ 885 (945)
..+.+ |...+..++|+||+++|++ ++ +++|+|||+.+++...++ ..|...|.+++||| ||
T Consensus 297 ~~l~g--~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DG 373 (426)
T d1hzua2 297 AELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RG 373 (426)
T ss_dssp EEEEC--SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SS
T ss_pred EEEec--CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CC
Confidence 00222 6667778888888888884 33 578999999998766554 23556699999999 78
Q ss_pred ceE-EEe----ecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeee
Q 002264 886 NII-AIG----TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS 932 (945)
Q Consensus 886 ~~l-asg----~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s 932 (945)
+++ +++ +.+|.|+|||..+++....+.++. .++|+|++-+.
T Consensus 374 k~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~~ 419 (426)
T d1hzua2 374 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNVY 419 (426)
T ss_dssp SEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEHH
T ss_pred CEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeEe
Confidence 755 332 468899999999999999998775 45788888654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.1e-25 Score=231.55 Aligned_cols=234 Identities=15% Similarity=0.259 Sum_probs=187.5
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd 481 (945)
..+|...|+|++| ||++||+|+.||+|+|||+.+++.++ ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 5678899998765 79999999999999999999987766 78899999999987 566 899999999999999
Q ss_pred -CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeE---EecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
..+........+........ + ....++++..++.+.+|+........ .+..+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLR--F--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEE--C--CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred ccccccccccccccccccccc--c--cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 77777766665555544433 2 33578999999999999988765433 4455666777776654 4566666
Q ss_pred ecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEE
Q 002264 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (945)
Q Consensus 558 ~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (945)
. ++.+++||..+++.+..+.++.. .+..+.++ +..+++++.||.|++||+++...+.....+.. .+. .+
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~--~~ 224 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVR--CI 224 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEE--EE
T ss_pred C----CCceeeecCCCCcEEEEEccccc-ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce--eee--ec
Confidence 4 89999999999999999988766 56555554 67899999999999999999999888876543 443 46
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC
Q 002264 638 SKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 638 sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
++++.+|++++.||.|++||+.+.
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHH
T ss_pred cccceEEEEEcCCCEEEEEECCCC
Confidence 678899999999999999998644
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.6e-25 Score=245.16 Aligned_cols=284 Identities=12% Similarity=0.142 Sum_probs=205.7
Q ss_pred cCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEE------EEc
Q 002264 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV------AWS 415 (945)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i------~~s 415 (945)
+|.+.|+++++++ + +++|||.|++|+|||..+.+....... ......|...+..+ ..+
T Consensus 12 ~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 75 (393)
T d1sq9a_ 12 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDK-------------SYSHFVHKSGLHHVDVLQAIERD 75 (393)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGG-------------EEEEECCTTCEEEEEEEEEEETT
T ss_pred cccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccce-------------eEeeeeccCCceEeeeEeeeccC
Confidence 5999999999875 4 489999999999999876553211000 00112233333322 222
Q ss_pred C-CCCEEEEEECCCcEEEEEccCCcccccce-------eeccccccEEEEEEecCCC---eeEEEEEeCCCcEEEEe-CC
Q 002264 416 P-DGNYVGVAFTKHLIQLYSYAGSNDLRQHS-------QIDAHVGAVNDLAFAYPNK---LLCVVTCGDDKLIKVWE-LS 483 (945)
Q Consensus 416 ~-~g~~las~~~dg~i~vwd~~~~~~~~~~~-------~~~~h~~~v~~l~~s~~~~---~~~l~s~s~d~~i~vwd-~~ 483 (945)
. ++.++++++.||.|++|++..+....... ....+...+..++|.+++. ..++++++.||++++|+ ..
T Consensus 76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence 2 34578899999999999987654432111 1123566788899988642 11789999999999999 22
Q ss_pred -Cc-----------------eEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe------cCCCC
Q 002264 484 -GR-----------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY------DAPGH 539 (945)
Q Consensus 484 -~~-----------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~ 539 (945)
+. .......+...+.+++|+| ++ +|++|+.||+|++||+.+++....+ ..|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232 (393)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence 11 0111233455688899876 43 8999999999999999988776543 34677
Q ss_pred eEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec-------------cccCcceEEEEEcCCCCEEEEEECC
Q 002264 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-------------GFRKKSNGVVQFDTTQNHFLAVGED 606 (945)
Q Consensus 540 ~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~d 606 (945)
.|.+++|+|||++|++++.++ ..+.|++||+.+++.+..+. +|.. .|.+++|+|++++|++++.|
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~-t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~V~~l~fspd~~~l~S~s~D 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWD 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEEEEETT
T ss_pred eEEEcccccccceeeeecCCC-CcceeeecccccceeeeeeccccccccceeeeecccC-ceeeeccCCCCCeeEEECCC
Confidence 999999999999999998621 12469999999998887764 5655 79999999999999999999
Q ss_pred CcEEEEECCCCeeEEEeecCCCCCCcc----EEEEcCCCCEEEEEE
Q 002264 607 SQIKFWDMDNVNILTSTDAEGGLPNLP----RLRFSKEGNLLAVTT 648 (945)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~----~v~~sp~g~~l~~~~ 648 (945)
++|++||+.+++++..+.+|.. .|. .++|+|++..+++++
T Consensus 311 ~~v~vWd~~~g~~~~~l~gH~~--~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 311 GKLRFWDVKTKERITTLNMHCD--DIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCGG--GCSSGGGCCCBCTTSCBCSSCC
T ss_pred CEEEEEECCCCCEEEEECCcCC--cccCCccEEEECCCCCEEEEcc
Confidence 9999999999999999987643 443 578888888776543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=5.4e-27 Score=253.72 Aligned_cols=195 Identities=13% Similarity=0.053 Sum_probs=161.1
Q ss_pred EEEcC-CCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC--CcEEEEeCCCceEE
Q 002264 412 VAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWELSGRKLF 488 (945)
Q Consensus 412 i~~s~-~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d--~~i~vwd~~~~~~~ 488 (945)
-.||| ||+++|+++ +|.|++||++++...+ + +|...|.+++|+|||+ .|++++.+ ..|++||..+..+.
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~~ 79 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKAE 79 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCEE
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEE----c-cCCCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcEE
Confidence 56999 999999987 4789999998876443 3 6999999999999999 56555444 37999996566677
Q ss_pred EecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec------CCC
Q 002264 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDG 562 (945)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~ 562 (945)
.+..|...|.+++|+| ++++|++++.++.+++|++.+......+..+...+.+++|+|||++|+.+... ...
T Consensus 80 ~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 157 (360)
T d1k32a3 80 KFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157 (360)
T ss_dssp ECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred EeeCCCceEEeeeecc--cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecc
Confidence 8889999999999977 67899999999999999999999888888888889999999999999876542 223
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (945)
++.+++||..+++........ . ....++|+|+|+.|++++.++.+.+|+.....
T Consensus 158 ~~~~~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 158 MQAIHVYDMEGRKIFAATTEN-S-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp EEEEEEEETTTTEEEECSCSS-S-BEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred ccceeeeccccCceeeecccc-c-ccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 567999999988766554432 2 57778999999999999999999999976543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=3.2e-26 Score=247.54 Aligned_cols=191 Identities=8% Similarity=-0.011 Sum_probs=155.4
Q ss_pred EEEEec-CCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC--eEEEEEccCCCeeE
Q 002264 456 DLAFAY-PNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRV 532 (945)
Q Consensus 456 ~l~~s~-~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~ 532 (945)
.-.||| ||+ ++++++ +|.|++||..+..+..+ +|...|.+++|+| ||++|++++.+. .|++||.+++...
T Consensus 7 ~~~fSP~dG~--~~a~~~-~g~v~v~d~~~~~~~~~-~~~~~v~~~~~sp--Dg~~l~~~~~~~g~~v~v~d~~~~~~~- 79 (360)
T d1k32a3 7 AEDFSPLDGD--LIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGG--DTKVAFIHGTREGDFLGIYDYRTGKAE- 79 (360)
T ss_dssp EEEEEECGGG--CEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECS--SSEEEEEEEETTEEEEEEEETTTCCEE-
T ss_pred cccccCCCCC--EEEEEE-CCeEEEEECCCCcEEEc-cCCCCEEEEEECC--CCCEEEEEEcCCCCEEEEEECCCCcEE-
Confidence 367999 899 677776 67999999544444455 6999999999987 668887776553 7999999876544
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE--------
Q 002264 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-------- 604 (945)
Q Consensus 533 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 604 (945)
.+..+...+.+++|+|||++|++++. ++.+++|+..+++....+..+.. .+..++|+|+|++|+.++
T Consensus 80 ~~~~~~~~v~~~~~spdg~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~la~~~~~~~~~~~ 154 (360)
T d1k32a3 80 KFEENLGNVFAMGVDRNGKFAVVAND----RFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGETD 154 (360)
T ss_dssp ECCCCCCSEEEEEECTTSSEEEEEET----TSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred EeeCCCceEEeeeecccccccceecc----ccccccccccccceeeeeecccc-cccchhhccceeeeeeecccccccee
Confidence 56677888999999999999999985 88999999999998888887765 678899999999998754
Q ss_pred --CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002264 605 --EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 605 --~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
.++.+++|+..+++....... ...+..++|+|||+.|++++.++.+.+|+....
T Consensus 155 ~~~~~~~~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 155 GYVMQAIHVYDMEGRKIFAATTE---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp SCCEEEEEEEETTTTEEEECSCS---SSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred eccccceeeeccccCceeeeccc---ccccccccccCCCCEEEEEeCCCceEccccccc
Confidence 345689999998877654433 236788999999999999999999999987654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1.2e-24 Score=239.62 Aligned_cols=345 Identities=10% Similarity=-0.011 Sum_probs=242.6
Q ss_pred eeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ec---CCC
Q 002264 465 LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YD---APG 538 (945)
Q Consensus 465 ~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~---~~~ 538 (945)
.+++++.+.||+|.+|| .+++.+..+..+. .+..++|+| ||+++++++.|+.|++||+.+.+.... +. .+.
T Consensus 32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 33679999999999999 9999999998774 689999977 779999999999999999988765432 22 223
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC----------cceEEEEEcCCCCEEEE-EECCC
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----------KSNGVVQFDTTQNHFLA-VGEDS 607 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~-~~~dg 607 (945)
+.+.+..|+|||++|++.+. .++.+.+||..+++++..+..+.. .....+.+++++..+++ ...++
T Consensus 109 ~~~~s~~~SpDG~~l~vs~~---~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~ 185 (432)
T d1qksa2 109 SIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185 (432)
T ss_dssp EEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CeEEecccCCCCCEEEEEcC---CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence 34555667889998765443 388999999999998887765421 23456789999987655 45789
Q ss_pred cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCccccccccCCccccccCcceeeeec
Q 002264 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (945)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 686 (945)
.|.+|+..+++.......+.. ..+..++|+|+|+++++++. ++.+.+++..++. ...........
T Consensus 186 ~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~-~~~~~~~g~~~------------ 251 (432)
T d1qksa2 186 KILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-LVAIEDTGGQT------------ 251 (432)
T ss_dssp EEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEECSSSS------------
T ss_pred eEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccce-EEEEeccCccc------------
Confidence 999999998776554443322 25789999999998887776 4578888887652 22111100000
Q ss_pred ccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccc
Q 002264 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (945)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (945)
.+...
T Consensus 252 ---------------------------------------------------------------------------~~~~~ 256 (432)
T d1qksa2 252 ---------------------------------------------------------------------------PHPGR 256 (432)
T ss_dssp ---------------------------------------------------------------------------BCCTT
T ss_pred ---------------------------------------------------------------------------cccCc
Confidence 01112
Q ss_pred eEEEEEecCCCeEEEee-ecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 767 VVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 767 v~~l~~s~dg~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
.........+....+.. .++.+.+|...... ... |...+....++|++..
T Consensus 257 ~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~---------------------------~~~--~~~~v~~~~~~~~g~~ 307 (432)
T d1qksa2 257 GANFVHPTFGPVWATSHMGDDSVALIGTDPEG---------------------------HPD--NAWKILDSFPALGGGS 307 (432)
T ss_dssp CEEEEETTTEEEEEEEBSSSSEEEEEECCTTT---------------------------CTT--TBTSEEEEEECSCSCC
T ss_pred ccceecCCCCceecccccCCceEEeccccccc---------------------------ccc--cccEEEEEEEcCCCCe
Confidence 22223333333333322 26677777532110 112 5667888999999999
Q ss_pred EEecC-CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEec
Q 002264 846 VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (945)
Q Consensus 846 la~~s-d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 924 (945)
+++++ +++.++|+..+. ..|.....++++ | |++.|++++.|+.+++|++.++.. +..|...|.+++||
T Consensus 308 ~~~~s~p~~~~lw~~~~~------~~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS 376 (432)
T d1qksa2 308 LFIKTHPNSQYLYVDATL------NPEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFN 376 (432)
T ss_dssp CCEECCTTCSEEEEECTT------CSSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEEC
T ss_pred EEEEecCCccceeecccC------CCCCCeeeEEEE-E-echhhcccccCCceEecccccccc---cCCCCCcEEEeEEC
Confidence 98888 888999986543 234433455665 8 899999999999999999977643 34577889999999
Q ss_pred CCcceeeeec-----CCceEEEEec
Q 002264 925 TSLNILVSSG-----ADAQVTLCVE 944 (945)
Q Consensus 925 ~dg~~l~s~~-----~Dg~i~vWdl 944 (945)
|||++++.+. .||.|+|||.
T Consensus 377 ~DG~~v~~S~~~~~~~~g~i~i~D~ 401 (432)
T d1qksa2 377 KDGTEVWFSVWNGKDQESALVVVDD 401 (432)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCCCEEEEEEecCCCCCCcEEEEEC
Confidence 9999885442 5788999995
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=2.8e-23 Score=229.51 Aligned_cols=332 Identities=11% Similarity=0.023 Sum_probs=217.8
Q ss_pred ecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEe--c
Q 002264 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY--A 581 (945)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~--~ 581 (945)
.+....++++.+.||+|++||+.+++.+..+..+. .+..++|+|||+++++++. ++.+++||+.+++..... .
T Consensus 28 ~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~----d~~v~vwd~~t~~~~~~~~i~ 102 (426)
T d1hzua2 28 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIK 102 (426)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEE
T ss_pred CCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC----CCCEEEEEccCCceeEEEEEe
Confidence 33333466888899999999999999999888764 5899999999999999875 889999999988754432 2
Q ss_pred ---cccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCE-EEEEECCCcEEEE
Q 002264 582 ---GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL-LAVTTADNGFKIL 656 (945)
Q Consensus 582 ---~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~-l~~~~~dg~i~iw 656 (945)
++.. .+.+++|+|||+++++++ .++.+.+||..++.++..+..+.. .+...++.+++.. .++.+.|+...++
T Consensus 103 ~~~~~~~-~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~d~~~~~~ 179 (426)
T d1hzua2 103 IGIEARS-VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPEFIV 179 (426)
T ss_dssp CCSEEEE-EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred CCCCCcc-eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--CccceeecCCCceeEEEECCCCCEEEE
Confidence 2222 345567788999876654 889999999999999888876654 5666777777764 3455566666666
Q ss_pred ECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCC
Q 002264 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (945)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (945)
......... . ....++ .
T Consensus 180 ~~~~~~~i~-~----------------~~~~~~----------------------------------------------~ 196 (426)
T d1hzua2 180 NVKETGKVL-L----------------VNYKDI----------------------------------------------D 196 (426)
T ss_dssp EETTTTEEE-E----------------EECSSS----------------------------------------------S
T ss_pred ecCCCCeEE-E----------------EEeccc----------------------------------------------c
Confidence 543221100 0 000000 0
Q ss_pred CCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccC
Q 002264 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (945)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 815 (945)
.+.+ ... .+...+..++|+|++++++++.. +..+.+++... ++..+.........
T Consensus 197 ~~~~------------~~~------~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 252 (426)
T d1hzua2 197 NLTV------------TSI------GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD------RRLSALVDVGKTPH 252 (426)
T ss_dssp SCEE------------EEE------ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT------TEEEEEEECSSCCC
T ss_pred ceee------------EEe------ccCCccEeeeECCCCcEEEeeeecccceeeeeccc------ccEEEEeccCCccc
Confidence 0000 000 14567889999999998887765 56677776532 22221111000000
Q ss_pred CCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEecc-------CceEEEEecCCCCCeeEEEeecCCCceE
Q 002264 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMM-------TFKVMTTFMSPPPASTFLAFHPQDNNII 888 (945)
Q Consensus 816 ~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~-------~~~~~~~~~~h~~~i~~l~~s~~~~~~l 888 (945)
. ..... .... +...+.....++ ++.+.+|+.. .++...++.+|...+..++|+| ++++|
T Consensus 253 ~-~~~~~-~~~~--~~~~~~~~~~~~---------d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l 318 (426)
T d1hzua2 253 P-GRGAN-FVHP--KYGPVWSTSHLG---------DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHL 318 (426)
T ss_dssp C-SCCEE-EEET--TTEEEEEEECTT---------TCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEE
T ss_pred c-cceee-eecC--CCCceEEeccCC---------CceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceE
Confidence 0 00000 0000 222233333333 4445555433 3578889999999999999999 89999
Q ss_pred E-------EeecCceEEEEecccceEEEEe---------cCCCcceeEEEecCCcceee-e----ecCCceEEEEec
Q 002264 889 A-------IGTEDSTIHIYNVRVDEVKSKL---------KGHQKRITGLAFSTSLNILV-S----SGADAQVTLCVE 944 (945)
Q Consensus 889 a-------sg~~dg~v~vwd~~~~~~~~~l---------~~h~~~V~~l~~s~dg~~l~-s----~~~Dg~i~vWdl 944 (945)
+ +++.|++|+|||+.+++...++ ..|...|.+++|||||++++ + .+.|+.|+|||.
T Consensus 319 ~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred EEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence 8 4667899999999998765543 34667899999999999774 3 256899999995
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=4e-21 Score=201.17 Aligned_cols=273 Identities=10% Similarity=0.048 Sum_probs=212.1
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE-EEECCCcEEEEEcc
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VAFTKHLIQLYSYA 436 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la-s~~~dg~i~vwd~~ 436 (945)
|+.++++.|++|.|||+.+++.+.. +. ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE-------------------EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 5567788899999999999987642 21 224578999999999885 56678999999999
Q ss_pred CCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCCCCEEEEEeeecCCccE-EEEE
Q 002264 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF-IFST 514 (945)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~ 514 (945)
+++.+. .+..|. .+..++|++++.. .++++..++.+.+|+ .+++....+..+ ....+++++++ +.. ++++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d--g~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEEE
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeecC--CCeeeeee
Confidence 987766 455454 4689999999986 566777888999999 777777777644 45677888764 444 4566
Q ss_pred EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEc
Q 002264 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (945)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 594 (945)
..++.+.+|+..+......+.... .+..+.++|+++.++++.. ..+.+.+|+....+......... ....++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 208 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred ccccceeeeeccccceeeecccCC-CceEEEeeccccceeeecc---cccccccccccceeeeecccccC--Ccceeecc
Confidence 678899999998887777666554 4778999999999988875 36678888888887777665543 46778999
Q ss_pred CCCCEEEEEE---CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE-EEEECCCcEEEEECCCCccccccc
Q 002264 595 TTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAV 668 (945)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~ 668 (945)
++++.+++++ .++.|++||..+++.+..+..+. .+.+++|+|||++| ++++.|+.|++||++++ +.+.++
T Consensus 209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~ 282 (301)
T d1l0qa2 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATM 282 (301)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred ccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEE
Confidence 9999887765 34679999999999988887643 57899999999987 56667899999999988 444433
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=3.6e-21 Score=205.16 Aligned_cols=300 Identities=9% Similarity=0.049 Sum_probs=210.9
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCC--CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~ 586 (945)
+++++++.|++|++||+.+.+....+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999999888877654 346789999999999876543 3789999999999998887665431
Q ss_pred ----ceEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 587 ----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 587 ----~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+..++|+|+++.+++++ .++.+.+||..+++....+.... .+..++|+|||+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 244689999999998876 46789999999999988887543 5789999999999999864
Q ss_pred CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCcc
Q 002264 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (945)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (945)
.+.+||..++. ....+..... .....+.+++..+.
T Consensus 155 -~~~~~d~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~------------------------------------- 189 (337)
T d1pbyb_ 155 -DLHVMDPEAGT-LVEDKPIQSW------EAETYAQPDVLAVW------------------------------------- 189 (337)
T ss_dssp -SEEEEETTTTE-EEEEECSTTT------TTTTBCCCBCCCCC-------------------------------------
T ss_pred -CcceeeeecCc-EEEEeecCCc------cccceecCCcceee-------------------------------------
Confidence 47889998773 3332222111 11122223322211
Q ss_pred ccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeecc
Q 002264 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (945)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (945)
...... +...........+.........++.+.+|+.
T Consensus 190 ~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 226 (337)
T d1pbyb_ 190 NQHESS--------------------------GVMATPFYTARKDIDPADPTAYRTGLLTMDL----------------- 226 (337)
T ss_dssp CCCTTT--------------------------TEEEEEEEEEBTTSCTTSGGGEEEEEEEEET-----------------
T ss_pred cccccc--------------------------ceeeeeeeeeeeccceeeecccCccEEEEEc-----------------
Confidence 000000 0011111122223333333444555666543
Q ss_pred ccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEE
Q 002264 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (945)
Q Consensus 811 ~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~las 890 (945)
.++......... +...+..+++++++.+++++ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++
T Consensus 227 -----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v 296 (337)
T d1pbyb_ 227 -----ETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWL 296 (337)
T ss_dssp -----TTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEE
T ss_pred -----CCCcEEEEEecC--CCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEE
Confidence 333322222322 56678889999999888655 5889999999999998886 567789999999 8999999
Q ss_pred eecCceEEEEecccceEEEEecC
Q 002264 891 GTEDSTIHIYNVRVDEVKSKLKG 913 (945)
Q Consensus 891 g~~dg~v~vwd~~~~~~~~~l~~ 913 (945)
++.|++|+|||..+++.+.+++-
T Consensus 297 ~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 297 GGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ESBSSEEEEEETTTCCEEEEEEC
T ss_pred EeCCCcEEEEECCCCcEEEEEEC
Confidence 99999999999999999988764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=2.7e-21 Score=206.96 Aligned_cols=311 Identities=8% Similarity=-0.043 Sum_probs=216.5
Q ss_pred cCCccEEEEEEcCCeEEEEEccCCCeeEEecCC-CCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc
Q 002264 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (945)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~ 583 (945)
+++++++++++.+++|.+||+.+.+....+..+ ...+.+++|+|||+++++++. .++.|++||+.+++.+..+...
T Consensus 5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeeeeccc
Confidence 346799999999999999999999888877653 446789999999999877653 3789999999999988777543
Q ss_pred cCc-----ceEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEE
Q 002264 584 RKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (945)
Q Consensus 584 ~~~-----~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~ 646 (945)
... .+..++|+|+|+++++++ .++.+.+|+..+++....+..+.....+..+.+++++.++++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 321 245689999999998765 477899999988776554443333335677888888877664
Q ss_pred EECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCC
Q 002264 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (945)
Q Consensus 647 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (945)
++.+.+|+..++ .....+..+. ....+.++|++..++.
T Consensus 162 ---~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~-------------------------------- 199 (346)
T d1jmxb_ 162 ---GPDIYKMDVKTG-KYTVALPLRN------WNRKGYSAPDVLYFWP-------------------------------- 199 (346)
T ss_dssp ---SSSEEEECTTTC-CEEEEECSTT------CCCTTBCCCBCCCCCC--------------------------------
T ss_pred ---CCcceEEEccCC-CEEEEEecCC------CccceEEeccccEEEE--------------------------------
Confidence 356899999877 3333333221 1233455555554321
Q ss_pred CCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceee
Q 002264 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (945)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~ 806 (945)
.+..++.+.+++. ...+.+....+.+...++.+.+|++
T Consensus 200 ----~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~------------- 237 (346)
T d1jmxb_ 200 ----HQSPRHEFSMLYT-------------------------IARFKDDKQDPATADLLYGYLSVDL------------- 237 (346)
T ss_dssp ----CCCTTCEEEEEEE-------------------------EEEC-------CCCEEEEEEEEEET-------------
T ss_pred ----EecCCCceEeeee-------------------------eeeeccCceeEeeccCCceEEEEEC-------------
Confidence 1111122222211 1122233344555555666777754
Q ss_pred eeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCc
Q 002264 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886 (945)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~ 886 (945)
.++......... +...+.++.+++++.+++.+.++.|.+||..+++.+..+. +...+.+++||| ||+
T Consensus 238 ---------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~ 304 (346)
T d1jmxb_ 238 ---------KTGKTHTQEFAD--LTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGD 304 (346)
T ss_dssp ---------TTCCEEEEEEEE--CSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSS
T ss_pred ---------CCCceEEEEeec--ccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCC
Confidence 333322222333 6777889999999999998888899999999999988886 456799999999 899
Q ss_pred eEEEeecCceEEEEecccceEEEEecCCC
Q 002264 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (945)
Q Consensus 887 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~ 915 (945)
+|++++.||.|+|||+++++.+.++..+.
T Consensus 305 ~l~v~~~d~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 305 KLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred EEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence 99999999999999999999999887544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=2.2e-19 Score=187.75 Aligned_cols=265 Identities=12% Similarity=0.091 Sum_probs=203.4
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (945)
+|++.. .+....+.....+..++|||||++++++++.++.|.+||+.+++.+.. +..|.
T Consensus 16 v~D~~t--~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~~ 74 (301)
T d1l0qa2 16 VIDVTS--NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAGS 74 (301)
T ss_dssp EEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECSS
T ss_pred EEECCC--CeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eeccc
Confidence 777655 466777777788999999999998777888899999999999876632 33343
Q ss_pred ccEEEEEEcCCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
.+..++|++++.+++++ ..++.+.+|+..+++... .+. +...+.+++|+|++.. +++++..++.+.+|+ .++
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~ 148 (301)
T d1l0qa2 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTK 148 (301)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTT
T ss_pred -cccccccccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCe-eeeeeccccceeeeecccc
Confidence 57899999999876654 557789999999886655 333 4566889999999995 566777889999999 777
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcC-CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
..+..+..+ ..+..+++++ ++..+++++.+ +.+.+|+............ ...+..++++++++.++++..+ ..+
T Consensus 149 ~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~-~~~ 223 (301)
T d1l0qa2 149 AVINTVSVG-RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVD-KYF 223 (301)
T ss_dssp EEEEEEECC-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEEC-SSC
T ss_pred ceeeecccC-CCceEEEeec--cccceeeecccccccccccccceeeeecccc-cCCcceeecccccccccccccc-cee
Confidence 777777644 4577788876 44566666654 6677777665554444443 3457889999999998877642 235
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEE-EEECCCcEEEEECCCCeeEEEeec
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
+.|.+||..+++.+..+..+. .+..++|+|+|++++ +++.++.|++||+.+++.+..+..
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 789999999999988877643 478899999999875 566799999999999999988865
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=4.7e-21 Score=204.23 Aligned_cols=299 Identities=9% Similarity=0.041 Sum_probs=198.4
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE-EEECCCcEEEEECCCCccccccccCCccccc
Q 002264 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (945)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (945)
+++++++.|++|++||+.+++.+..+..+.....+.+++|+|||++++ +++.++.|.+||+.++ +.......+.....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCccc
Confidence 479999999999999999999999998766555688999999999875 5567899999999998 44555544443333
Q ss_pred cCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeee
Q 002264 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (945)
Q Consensus 677 ~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 756 (945)
...+..++|+|+|+.++++...... ........+..+.+|+...... ...+.
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~-------------------------~~~~~~~~~~~~~~~d~~~~~~---~~~~~ 132 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRL-------------------------ELTHFEVQPTRVALYDAETLSR---RKAFE 132 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEE-------------------------CSSCEEECCCEEEEEETTTTEE---EEEEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcc-------------------------eeeeccccccceeeccccCCeE---EEecc
Confidence 3456789999999988754332111 0111222345566676653221 11111
Q ss_pred cCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccc------cccCCCcccccccccCCCc
Q 002264 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ------HWLPSSGLLMANDVAGVNL 830 (945)
Q Consensus 757 ~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~ 830 (945)
+...+..++|+|||+++++++.+ +.+||.... +........ .+......... .....+
T Consensus 133 ------~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 196 (337)
T d1pbyb_ 133 ------APRQITMLAWARDGSKLYGLGRD--LHVMDPEAG------TLVEDKPIQSWEAETYAQPDVLAVWN--QHESSG 196 (337)
T ss_dssp ------CCSSCCCEEECTTSSCEEEESSS--EEEEETTTT------EEEEEECSTTTTTTTBCCCBCCCCCC--CCTTTT
T ss_pred ------ccCCceEEEEcCCCCEEEEEcCC--cceeeeecC------cEEEEeecCCccccceecCCcceeec--cccccc
Confidence 33457789999999999987654 667875432 111111110 00000000000 000001
Q ss_pred CCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEE-ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEE
Q 002264 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (945)
Q Consensus 831 ~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~ 908 (945)
...........+......++ ++.+.+|+..++..... +..+...+.++.+++ ++.+++.+ ++.|++||+.+++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~ 273 (337)
T d1pbyb_ 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASI 273 (337)
T ss_dssp EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEE
T ss_pred eeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--cccEEEEECCCCcEE
Confidence 11122222233444444444 56799999998876544 445677789999999 88887765 688999999999999
Q ss_pred EEecCCCcceeEEEecCCcceeeeecCCceEEEEecC
Q 002264 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 909 ~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
..+. +...+.+++|+|||++|++++.|++|+|||+.
T Consensus 274 ~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~ 309 (337)
T d1pbyb_ 274 KRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred EEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 8886 56779999999999999999999999999973
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=2.2e-19 Score=191.79 Aligned_cols=300 Identities=10% Similarity=0.014 Sum_probs=199.1
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEE
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTS 622 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 622 (945)
++++++++++++++. ++.|.+||+.+++.+.++.......+..++|+|||+++++++ .++.|++||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~----~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEET----TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEEcC----CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence 468899999999986 889999999999999988755444677899999999886655 789999999999999887
Q ss_pred eecCCCC----CCccEEEEcCCCCEEEEEE------------CCCcEEEEECCCCccccccccCCccccccCcceeeeec
Q 002264 623 TDAEGGL----PNLPRLRFSKEGNLLAVTT------------ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (945)
Q Consensus 623 ~~~~~~~----~~v~~v~~sp~g~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 686 (945)
+...... ..+..++|+|||+++++++ .++.+.+|+..++.. ...+..+. ....+..+.++
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~ 153 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFP---MPRQVYLMRAA 153 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEE---CCSSCCCEEEC
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee-eeEEEeee---ccCceEEEEec
Confidence 7654321 2357899999999998775 466788888776522 21111100 00112223333
Q ss_pred ccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccc
Q 002264 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (945)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (945)
++++.++ .+ +.+.+|++.... ....+. ....
T Consensus 154 ~~~~~~~-------------------------------------~~---~~~~~~~~~~~~---~~~~~~------~~~~ 184 (346)
T d1jmxb_ 154 DDGSLYV-------------------------------------AG---PDIYKMDVKTGK---YTVALP------LRNW 184 (346)
T ss_dssp TTSCEEE-------------------------------------ES---SSEEEECTTTCC---EEEEEC------STTC
T ss_pred CCCEEEE-------------------------------------eC---CcceEEEccCCC---EEEEEe------cCCC
Confidence 3333221 11 334555554211 111111 1223
Q ss_pred eEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 767 VVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 767 v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
...+.++|++..+..... ++.+.+++ ....+......
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~ 222 (346)
T d1jmxb_ 185 NRKGYSAPDVLYFWPHQSPRHEFSMLY------------------------------------------TIARFKDDKQD 222 (346)
T ss_dssp CCTTBCCCBCCCCCCCCCTTCEEEEEE------------------------------------------EEEEC------
T ss_pred ccceEEeccccEEEEEecCCCceEeee------------------------------------------eeeeeccCcee
Confidence 344556677665544433 23333332 11222334445
Q ss_pred EEecC-CCeEEEEeccCceEEEE-ecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEe
Q 002264 846 VMSAT-GGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (945)
Q Consensus 846 la~~s-d~~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 923 (945)
++++. +..+.+||..++..... +..|...+.++.+++ ++.+++.+. ++.|++||..+++.+..+. +...+.+++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~ 299 (346)
T d1jmxb_ 223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP-KDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAF 299 (346)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS-SCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeC-CCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEE
Confidence 55555 56799999998876544 456778899999999 666777665 4579999999999988876 4567999999
Q ss_pred cCCcceeeeecCCceEEEEecC
Q 002264 924 STSLNILVSSGADAQVTLCVEH 945 (945)
Q Consensus 924 s~dg~~l~s~~~Dg~i~vWdl~ 945 (945)
+|||++|++++.|+.|+|||+.
T Consensus 300 s~DG~~l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 300 DKKGDKLYLGGTFNDLAVFNPD 321 (346)
T ss_dssp CSSSSCEEEESBSSEEEEEETT
T ss_pred cCCCCEEEEEeCCCcEEEEECc
Confidence 9999999999999999999973
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.81 E-value=5.8e-17 Score=174.98 Aligned_cols=332 Identities=7% Similarity=-0.051 Sum_probs=211.1
Q ss_pred cCCCCCEEEEEeeecCCccEEEEE-----EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC-----
Q 002264 491 EGHEAPVYSICPHHKENIQFIFST-----AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK----- 560 (945)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~----- 560 (945)
..+..++.+++++| +|+.++.. +..+.|.+||..+++....+..+.. ..++|+|||+++++++...
T Consensus 17 ~~~~~p~~~~a~sp--dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~ 92 (373)
T d2madh_ 17 GAADGPTNDEAPGA--DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAK 92 (373)
T ss_pred ccCCCCccccccCC--CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccc
Confidence 35777888888876 56776654 2346799999999888877665443 3789999999999876421
Q ss_pred -CCCceEEEEeCCCCceeeEeccccCcc------eEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 561 -DGDSFLVEWNESEGTIKRTYAGFRKKS------NGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 561 -d~~~~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
..++.|.+||..+++.+..+..+.... ...+.|+++++.+++.. .++.+.+|+....+...... .
T Consensus 93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~ 166 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS------S 166 (373)
T ss_pred cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec------c
Confidence 125789999999999988776654422 23478889988776654 56788999988877665543 3
Q ss_pred ccEEEEcCCCCEE-EEEECCCcEEEEECCCCccccccccCCcccc-ccCcceeeeecccccceeccCCCCCccccccCCC
Q 002264 632 LPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEA-LRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (945)
Q Consensus 632 v~~v~~sp~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (945)
..++.++|+|+.+ ++.+.|+.+.+|+..++. ............ .........+.+++..
T Consensus 167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 227 (373)
T d2madh_ 167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA-AGAGLVGAMLTAAQNLLTQPAQANKSGRI------------------ 227 (373)
T ss_pred ceeEEEecCCCcEEEEEcCCCeEEEEEcCCce-eeEEEeeeccccCccceeeeEEECCCceE------------------
Confidence 4678999998765 577889999999998763 222221111100 0001112222232222
Q ss_pred CCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEE
Q 002264 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (945)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~ 789 (945)
+..+.++.+.+|+...... ........ +........+.|.+...++.+.++..
T Consensus 228 --------------------~~~~~~~~v~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~- 280 (373)
T d2madh_ 228 --------------------VWPVYSGKILQADISAAGA---TNKAPIDA---LSGGRKADTWRPGGWQQVAYLKSSDG- 280 (373)
T ss_pred --------------------EEecCCceEEEEEcCCCeE---EEEEeecc---ccCcEEeeeeccCcceeeEEecCCCe-
Confidence 2333445555555542110 00000000 12222233333333322222222211
Q ss_pred EEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC-CCeEEEEeccCceEEEEe
Q 002264 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF 868 (945)
Q Consensus 790 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s-d~~i~iwd~~~~~~~~~~ 868 (945)
...+.+++..++... ++.+.+||..+++.+..+
T Consensus 281 ----------------------------------------------~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~ 314 (373)
T d2madh_ 281 ----------------------------------------------IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred ----------------------------------------------EEEecCCCceEEeecCCCeEEEEECCCCcEEEEe
Confidence 112223344444444 678999999999999888
Q ss_pred cCCCCCeeEEEeecCCCc--eEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCC
Q 002264 869 MSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (945)
Q Consensus 869 ~~h~~~i~~l~~s~~~~~--~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d 926 (945)
. +...+.+++|+| ||+ ++++++.|++|+|||+.+|+.+.++..+....+.|++.++
T Consensus 315 ~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 315 S-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred c-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 6 567799999999 776 4578999999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.79 E-value=2.8e-16 Score=169.51 Aligned_cols=206 Identities=9% Similarity=-0.011 Sum_probs=138.3
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEE-----CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEE-----
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----- 471 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~-----~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~----- 471 (945)
...+.+++.+++++|||+.+++.. ..+.|.+||..+++.+. ++..+..+ .++|+|||+ +++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~ 88 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFS 88 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCC
Confidence 345788999999999999987652 34579999999998766 45455443 799999999 55554
Q ss_pred -----eCCCcEEEEe-CCCceEEEecCCCCCEE-------EEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCC
Q 002264 472 -----GDDKLIKVWE-LSGRKLFNFEGHEAPVY-------SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 472 -----s~d~~i~vwd-~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
+.++.|.+|| .+++.+..+..+..... .+.|++++...++.....++.+.+|+....+......
T Consensus 89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--- 165 (373)
T d2madh_ 89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS--- 165 (373)
T ss_pred cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---
Confidence 3467899999 88888888776655443 3455554322223333445677888776654443332
Q ss_pred CeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC-----cceEEEEEcCCCCEEEEEECCCcEEEEE
Q 002264 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (945)
Q Consensus 539 ~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~i~iwd 613 (945)
...++.++|+++.+++... .++.+.+|+...+........... .......+++++ .++..+.++.+++|+
T Consensus 166 -~~~~~~~s~~g~~~~v~~~---~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~ 240 (373)
T d2madh_ 166 -SPTCYHIHPGAPSTFYLLC---AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQAD 240 (373)
T ss_pred -cceeEEEecCCCcEEEEEc---CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEE
Confidence 3457889999987765443 488999999998877765543221 112334455544 455666788999999
Q ss_pred CCCCeeEEE
Q 002264 614 MDNVNILTS 622 (945)
Q Consensus 614 ~~~~~~~~~ 622 (945)
..++.....
T Consensus 241 ~~~~~~~~~ 249 (373)
T d2madh_ 241 ISAAGATNK 249 (373)
T ss_pred cCCCeEEEE
Confidence 887665433
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.9e-17 Score=175.52 Aligned_cols=294 Identities=11% Similarity=0.090 Sum_probs=185.2
Q ss_pred EEEEEEcCCeEEEEEccCCCeeE--EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc--cC
Q 002264 510 FIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF--RK 585 (945)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~--~~ 585 (945)
.+++++.|++|++|+++...... ....+...+..++|+|||++|++++. .++.|.+|++........+..+ ..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence 45777899999999998655433 33356678899999999999977664 4789999998765433332221 22
Q ss_pred cceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCCcc
Q 002264 586 KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~~~ 663 (945)
..+..++|+|+|+++++++ .++.+.+|+..............+...+.++.++|+++++++++. +..|.+|+..+...
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence 2466799999999999988 477899999888776665554444557889999999999888875 45699999876533
Q ss_pred ccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCccccc
Q 002264 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (945)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (945)
...................++|++++..++.... ..+...+++.
T Consensus 163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~------------------------------------~~~~~~v~~~ 206 (333)
T d1ri6a_ 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE------------------------------------LNSSVDVWEL 206 (333)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET------------------------------------TTTEEEEEES
T ss_pred ceeeeceeeeeecCCCccEEEEeccceeEEeecc------------------------------------ccCceEEEee
Confidence 3222211111112233466888888877643211 1122222222
Q ss_pred ceeecCCc--ceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeEEEEeecCCCCCCCCceeeeeccccccCCCccc
Q 002264 744 AEIVDSGQ--CRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (945)
Q Consensus 744 ~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (945)
........ ......+...........+++++|+++++.... ++.+.+|++..... ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 266 (333)
T d1ri6a_ 207 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS--------------------VL 266 (333)
T ss_dssp SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--------------------CE
T ss_pred cccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCC--------------------EE
Confidence 11000000 001111211224456678899999998776654 68899998643211 00
Q ss_pred ccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEe--ccCceE
Q 002264 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFN--MMTFKV 864 (945)
Q Consensus 821 ~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd--~~~~~~ 864 (945)
....... ....+.+++|||||++|++++ +++|++|+ ..+|++
T Consensus 267 ~~~~~~~--~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 267 SKEGFQP--TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EEEEEEE--CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEEEEeC--CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 0000111 345678899999999887776 57899995 456654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=9.8e-18 Score=179.77 Aligned_cols=315 Identities=10% Similarity=-0.000 Sum_probs=208.5
Q ss_pred EEcCCCCEEEEEeec-CCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----------CCCcEEEEE
Q 002264 545 LYSADGSRLFSCGTS-KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWD 613 (945)
Q Consensus 545 ~~s~~~~~l~~~~~~-~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd 613 (945)
+.+||++.+++.... ......+++||..+++.+.++..+.. ..++|+|||++|++.+ .|+.|++||
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~---~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D 84 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 84 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC---CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence 567999998776421 12356799999999999988876543 3589999999888753 478999999
Q ss_pred CCCCeeEEEeecCCCC-----CCccEEEEcCCCCEEEEEEC--CCcEEEEECCCCccccccccCCcccc--ccCcceeee
Q 002264 614 MDNVNILTSTDAEGGL-----PNLPRLRFSKEGNLLAVTTA--DNGFKILANAIGLRSLRAVENPPFEA--LRTPIESVA 684 (945)
Q Consensus 614 ~~~~~~~~~~~~~~~~-----~~v~~v~~sp~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~i~~v~ 684 (945)
..+++.+..+..+... .....++|+|+|+.+++++. +..+.+|+..++ .....+....... .......++
T Consensus 85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
T d2bbkh_ 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPDCYHIFPTAPDTFFM 163 (355)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCSEEEEEEEETTEEEE
T ss_pred CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC-cEeeEEecCCcceEeecCCcceEE
Confidence 9999988877654321 23467899999999887753 568999999887 4444333222110 112234456
Q ss_pred ecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCc
Q 002264 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTS 764 (945)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 764 (945)
+++||+.++. ....++.+.+++..... ..+.
T Consensus 164 ~~~dg~~~~v------------------------------------~~~~~~~~~~~~~~~~~-------------~~~~ 194 (355)
T d2bbkh_ 164 HCRDGSLAKV------------------------------------AFGTEGTPEITHTEVFH-------------PEDE 194 (355)
T ss_dssp EETTSCEEEE------------------------------------ECCSSSCCEEEECCCCS-------------CTTS
T ss_pred EcCCCCEEEE------------------------------------EecCCCeEEEEeccccc-------------ceec
Confidence 6677665542 12222333333332110 1133
Q ss_pred cceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCc
Q 002264 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (945)
Q Consensus 765 ~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~ 844 (945)
..+....+++++..++.++.++.+++|++..... .+++...+......... ........+++++|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~d~~ 261 (355)
T d2bbkh_ 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA------------KFLPAVEALTEAERADG-WRPGGWQQVAYHRALD 261 (355)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC------------EECCCEESSCHHHHHTT-EEECSSSCEEEETTTT
T ss_pred ceeeeccccCCCCeEEEecCCCeEEEEecCCCcE------------EEEeccCCcccceEeee-eeccceEEEEEeCCCC
Confidence 3445567788888899999999999998765431 11122211111100000 0123345688999999
Q ss_pred eEEecC-C----------CeEEEEeccCceEEEEecCCCCCeeEEEeecCCCc--eEEEeecCceEEEEecccceEEEEe
Q 002264 845 YVMSAT-G----------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVDEVKSKL 911 (945)
Q Consensus 845 ~la~~s-d----------~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~--~lasg~~dg~v~vwd~~~~~~~~~l 911 (945)
.++..+ + +.|.+||..+++.+.++. +...+.+++|+| ||+ +++++..|++|+|||+++++.+.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence 887653 1 359999999999988886 345689999999 776 4667788999999999999999999
Q ss_pred cCCCcceeEEEecCCc
Q 002264 912 KGHQKRITGLAFSTSL 927 (945)
Q Consensus 912 ~~h~~~V~~l~~s~dg 927 (945)
.++...-..+.+.++|
T Consensus 340 ~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 340 NQLGHGPQVITTADMG 355 (355)
T ss_dssp CCCCSSCCEEECCCCC
T ss_pred eCcCCCccEEEeCCCC
Confidence 8776656666665543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.3e-16 Score=169.14 Aligned_cols=279 Identities=14% Similarity=0.166 Sum_probs=185.2
Q ss_pred EEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEEccC
Q 002264 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAG 437 (945)
Q Consensus 359 llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~-~dg~i~vwd~~~ 437 (945)
++++++.|++|+||++.+...+.. .....|.+.|.+++|||||++|++++ .|+.|++|++..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~-----------------~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTL-----------------TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEE-----------------EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEECCCCCcEEEEEEcCCCCeEE-----------------EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence 567888999999999976543321 01234778899999999999996655 489999999987
Q ss_pred CcccccceeeccccccEEEEEEecCCCeeEEEEEe-CCCcEEEEe-CCCceE--EEecCCCCCEEEEEeeecCCccEEEE
Q 002264 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFS 513 (945)
Q Consensus 438 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vwd-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s 513 (945)
+...........+...+..++|+|||+ ++++++ .++.+.+|+ ...... .....+...+.++.+++ +++++++
T Consensus 69 ~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~~ 144 (333)
T d1ri6a_ 69 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLWV 144 (333)
T ss_dssp TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEEE
T ss_pred CCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeeec
Confidence 654332222223455678899999999 566665 577899998 444332 33445666778888876 4566666
Q ss_pred EE-cCCeEEEEEccCCCeeEE------ecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc----eeeEecc
Q 002264 514 TA-IDGKIKAWLYDTMGSRVD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAG 582 (945)
Q Consensus 514 ~~-~dg~i~iwd~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~----~~~~~~~ 582 (945)
++ .+..+.+|+......... ..........++|++++..++.... ..+...+|+..... .......
T Consensus 145 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~ 221 (333)
T d1ri6a_ 145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLDM 221 (333)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred cccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc---ccCceEEEeecccccceeeeeeeee
Confidence 65 456799999876544331 2233446788999999999887654 35566777654322 1111111
Q ss_pred -----ccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEee-cCCCCCCccEEEEcCCCCEEEEEEC-CCcEE
Q 002264 583 -----FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTD-AEGGLPNLPRLRFSKEGNLLAVTTA-DNGFK 654 (945)
Q Consensus 583 -----~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~ 654 (945)
........++++++++++++.. .++.+.+|++.......... .......+.+++|+|||++|++++. ++.|+
T Consensus 222 ~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~ 301 (333)
T d1ri6a_ 222 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS 301 (333)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred eecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEE
Confidence 1112355678999999877765 67789999887643322221 1112235688999999999887764 58899
Q ss_pred EEEC--CCC
Q 002264 655 ILAN--AIG 661 (945)
Q Consensus 655 iw~~--~~~ 661 (945)
+|++ +++
T Consensus 302 v~~id~~tG 310 (333)
T d1ri6a_ 302 VYEIVGEQG 310 (333)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 9955 444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=5.4e-17 Score=173.89 Aligned_cols=291 Identities=12% Similarity=0.070 Sum_probs=190.8
Q ss_pred cEEEEEEeCCCCeEEEEE----eCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 346 TVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasg----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
++.-.+.+|||++++++. ..+++|.+||..+++.+.. +..+. +..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g~--~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGF--LPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECS--SCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECCC--CCceEEcCCCCEE
Confidence 334446789999855543 3356799999999887642 22232 3379999999988
Q ss_pred EEE----------ECCCcEEEEEccCCcccccceeeccc----cccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCce
Q 002264 422 GVA----------FTKHLIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (945)
Q Consensus 422 as~----------~~dg~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~ 486 (945)
+++ +.|+.|++||..+++....+.....+ ......++|+++++.++++..+.+..+.+|+ .+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 764 34789999999998766533221111 2234568999999964444446678899999 88887
Q ss_pred EEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC------CCCeEEEEEEcCCCCEEEEEeecC
Q 002264 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA------PGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+..+..+..... + +... ...++.+.|+....+............. +...+....+.+++..++.++.
T Consensus 142 ~~~~~~~~~~~~---~-~~~~-~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHI---F-PTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEE---E-EEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceE---e-ecCC-cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 777765432221 1 1111 3345556666666555444333222211 2223445667788888887764
Q ss_pred CCCceEEEEeCCCCceee--EeccccC---------cceEEEEEcCCCCEEEEEECC----------CcEEEEECCCCee
Q 002264 561 DGDSFLVEWNESEGTIKR--TYAGFRK---------KSNGVVQFDTTQNHFLAVGED----------SQIKFWDMDNVNI 619 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~ 619 (945)
++.+++|+...+.... ....+.. .....+++++++..++....+ +.|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 8899999998775422 1111110 112347899999988876543 3699999999999
Q ss_pred EEEeecCCCCCCccEEEEcCCCC--EEEEEECCCcEEEEECCCCccccccccC
Q 002264 620 LTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVEN 670 (945)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (945)
+..+.... .+.+++|+|||+ ++++++.|+.|++||.+++ +.++.+.+
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~ 341 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ 341 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeC
Confidence 88886543 578999999998 4566677999999999999 45555543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.63 E-value=5.8e-14 Score=156.18 Aligned_cols=218 Identities=11% Similarity=0.062 Sum_probs=136.0
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC--
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-- 426 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~-- 426 (945)
.+.|.+++++ +.. .|+.|.+||+.+++.... +....+..|...|.+++|||||++||.++.
T Consensus 21 ~~~W~~d~~~-~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHEY-LYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSEE-EEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEeCCCCEE-EEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence 4779999984 654 478999999999876421 112346678889999999999999998753
Q ss_pred -------CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCCC----
Q 002264 427 -------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE---- 494 (945)
Q Consensus 427 -------dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~~---- 494 (945)
++.+.+||+++++.. .+..|...+..+.|||||+ .++... ++.+.+|+ ..++.......+.
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~ 156 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDII 156 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEee-cccceEEECCCCceeeeeeccCCCcc
Confidence 567899999987643 4667889999999999999 566644 78899999 6666554332221
Q ss_pred --------------CCEEEEEeeecCCccEEEEEEcCCe-EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec
Q 002264 495 --------------APVYSICPHHKENIQFIFSTAIDGK-IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (945)
Q Consensus 495 --------------~~v~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 559 (945)
+....+.|+| ||+.|+....|.+ +..|.+...... .........+.+...+...
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~wSP--DGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~------ 225 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAVN------ 225 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSCC------
T ss_pred cccccceeeeeeecCCccccEECC--CCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeeccccccccC------
Confidence 2234456765 6788888776543 554443211000 0011122223332222211
Q ss_pred CCCCceEEEEeCCCCceeeEecc----------ccCcceEEEEEcCCCCEEEEE
Q 002264 560 KDGDSFLVEWNESEGTIKRTYAG----------FRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 560 ~d~~~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~ 603 (945)
....+.+|++..+........ .....+..+.|.+++..++..
T Consensus 226 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 277 (470)
T d2bgra1 226 --PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (470)
T ss_dssp --CEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred --CcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEE
Confidence 134578888876654332211 111235567788877655543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.56 E-value=4.2e-14 Score=149.33 Aligned_cols=300 Identities=12% Similarity=0.057 Sum_probs=184.6
Q ss_pred EEEEEcCCeEEEEEccCCCeeEEecC------------------------------CCCeEEEEEEcCCCCEEEEEeecC
Q 002264 511 IFSTAIDGKIKAWLYDTMGSRVDYDA------------------------------PGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 511 l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
+++++.+|.|++|++.+.+....+.. |.........+|||++|++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~-- 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK-- 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence 56777899999999887776655422 1112344445789999988764
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCE--EEEEECCC-----------------cEEEEECCCCeeEE
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH--FLAVGEDS-----------------QIKFWDMDNVNILT 621 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~dg-----------------~i~iwd~~~~~~~~ 621 (945)
.+..|.++|+.+++..+.+..........++|+|+++. ++..+.+. .+..+|..+.+...
T Consensus 92 -~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~ 170 (441)
T d1qnia2 92 -ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW 170 (441)
T ss_dssp -TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred -CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence 47899999999999888776544446888999999984 44444332 23457777777776
Q ss_pred EeecCCCCCCccEEEEcCCCCEEEEEECCCc-EEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCC
Q 002264 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (945)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~ 700 (945)
.+...+ ....++++|+|+++++.+.+.. +..++..+... .
T Consensus 171 qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~-~----------------------------------- 211 (441)
T d1qnia2 171 QVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMRND-R----------------------------------- 211 (441)
T ss_dssp EEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS-B-----------------------------------
T ss_pred EEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCcce-E-----------------------------------
Confidence 666543 4577888888888887765421 11111111100 0
Q ss_pred ccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEE
Q 002264 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (945)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 780 (945)
..+.+.+ ....++++++|+++.
T Consensus 212 -----------------------------------d~i~v~n-----------------------~p~~~~~~~dGk~~~ 233 (441)
T d1qnia2 212 -----------------------------------DWVVVFN-----------------------VERIAAAVKAGNFKT 233 (441)
T ss_dssp -----------------------------------CEEEEEE-----------------------HHHHHHHHHTTCCBC
T ss_pred -----------------------------------EEEEeCC-----------------------ccceEEEecCCCEEE
Confidence 0000000 001122344555433
Q ss_pred EeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CCeEEEEe
Q 002264 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFN 858 (945)
Q Consensus 781 ~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~~i~iwd 858 (945)
. +.++.+.++.. .....+.. ++ -......+++||||+++++++ +++|.|||
T Consensus 234 v-~~~~v~vvd~~----------------------~~~~v~~~-IP---vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d 286 (441)
T d1qnia2 234 I-GDSKVPVVDGR----------------------GESEFTRY-IP---VPKNPHGLNTSPDGKYFIANGKLSPTVSVIA 286 (441)
T ss_dssp C-TTCCCCEEECS----------------------SSCSSEEE-EC---CBSSCCCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred e-CCCCcEEEEcc----------------------cCCceEEE-Ee---CCCCccCceECCCCCEEEEeCCcCCcEEEEE
Confidence 2 22334444321 11111111 11 123457799999999987765 78999999
Q ss_pred ccCceEE--------EEecCC---CCCeeEEEeecCCCceEEEeecCceEEEEecccc----------eEEEEe-----c
Q 002264 859 MMTFKVM--------TTFMSP---PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----------EVKSKL-----K 912 (945)
Q Consensus 859 ~~~~~~~--------~~~~~h---~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~----------~~~~~l-----~ 912 (945)
+.+.+.. .++.++ .-.....+|++ +|+.+.+.+-|.+|..|++... ..+..+ .
T Consensus 287 ~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~ 365 (441)
T d1qnia2 287 IDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQP 365 (441)
T ss_dssp GGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred eehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCC
Confidence 8753210 011111 11245568999 8999999999999999998521 234444 5
Q ss_pred CCCcceeEEEecCCcceeeee---cCCce
Q 002264 913 GHQKRITGLAFSTSLNILVSS---GADAQ 938 (945)
Q Consensus 913 ~h~~~V~~l~~s~dg~~l~s~---~~Dg~ 938 (945)
+|...+.+.+|+|||+||+++ +.|+.
T Consensus 366 GH~~~~~~~t~~pdGk~l~s~~k~s~dr~ 394 (441)
T d1qnia2 366 GHNHASLTESRDADGKWLVVLSKFSKDRF 394 (441)
T ss_dssp EEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred CCCccccccccCCCCcEEEecCccccccC
Confidence 788888899999999999999 66653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=8.9e-14 Score=149.09 Aligned_cols=289 Identities=7% Similarity=-0.066 Sum_probs=186.2
Q ss_pred CCCcEEEEEEeCCCCeEEEE--EeCcCc--EEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCC
Q 002264 343 QGSTVISMDFHPSHQTLLLV--GSSNGE--ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llas--gs~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g 418 (945)
+.+....++..++|+...++ ...+|+ |.+||..+++.+.. ..++... .++|+|||
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg 76 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG 76 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence 34456666778888853333 344454 66678888876532 3333333 58999999
Q ss_pred CEEEEEE----------CCCcEEEEEccCCcccccceeecc-----ccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-C
Q 002264 419 NYVGVAF----------TKHLIQLYSYAGSNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (945)
Q Consensus 419 ~~las~~----------~dg~i~vwd~~~~~~~~~~~~~~~-----h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~ 482 (945)
+.|++++ .|+.|.+||..+++.+..+. +.. .......++|+|||+. ++++...++.+.+|| .
T Consensus 77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~ 154 (368)
T d1mdah_ 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEET
T ss_pred CEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECC
Confidence 9998765 36779999999987665321 111 1122346899999995 333444679999999 8
Q ss_pred CCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec------CCCCeEEEEEEcCCCCEEEEE
Q 002264 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD------APGHWCTTMLYSADGSRLFSC 556 (945)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~~~ 556 (945)
+++.+..+..+.... +.+.+ ...++..+.||.+.+|++.......... .+...+..+.+.+++..+...
T Consensus 155 ~~~~~~~~~~~~~~~----~~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (368)
T d1mdah_ 155 GASDDQLTKSASCFH----IHPGA-AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp TTEEEEEEECSSCCC----CEEEE-TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred CCcEeEEeeccCcce----EccCC-CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence 888888776654432 12222 2567778889999999877655443221 222344566777787666554
Q ss_pred eecCCCCceEEEEeCCCCceeeEec--ccc---------CcceEEEEEcCCCCEEEEEECC---------CcEEEEECCC
Q 002264 557 GTSKDGDSFLVEWNESEGTIKRTYA--GFR---------KKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDN 616 (945)
Q Consensus 557 ~~~~d~~~~i~iwd~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~ 616 (945)
.+.+++++...+....... ... ......+++++++..++....+ ..|++||..+
T Consensus 230 ------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 230 ------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp ------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred ------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence 3456666665544332211 100 0012347889998887765422 3599999999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCE--EEEEECCCcEEEEECCCCcccccccc
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNL--LAVTTADNGFKILANAIGLRSLRAVE 669 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~--l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (945)
++.+..+.... .+.+++|+|||+. ++++..++.|++||..++ +.+..+.
T Consensus 304 ~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 304 GQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp CCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence 99888776542 5789999999973 456667899999999998 4444443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.53 E-value=2.2e-12 Score=143.16 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=88.9
Q ss_pred EEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec-----CCCCCEEEEEeeecCCccEEEEEEc---------CCe
Q 002264 455 NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAI---------DGK 519 (945)
Q Consensus 455 ~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~ 519 (945)
..+.|.++++ ++. ..|+.+.+|| .+++....+. .|...|.++.|+| ||++|+.++. ++.
T Consensus 20 ~~~~W~~d~~--~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp--Dg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 20 YSLRWISDHE--YLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCEECSSSE--EEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT--TSSEEEEEEEEEECSSSCEEEE
T ss_pred cCCEeCCCCE--EEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC--CCCEEEEEECCcceeeeccCce
Confidence 3578999997 554 3478899999 7777665444 3456789999877 6788888753 567
Q ss_pred EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 520 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
+.+||+.+++ ...+..+...+..+.|||||+.++... ++.+++|+..+++..+...
T Consensus 94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-----~~~l~~~~~~~g~~~~~t~ 149 (470)
T d2bgra1 94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYRITW 149 (470)
T ss_dssp EEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEECCS
T ss_pred EEEEECCCCc-ccccccCCccccccccccCcceeeEee-----cccceEEECCCCceeeeee
Confidence 8899998765 445666777899999999999999875 7789999999887665443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.53 E-value=1.6e-13 Score=147.12 Aligned_cols=286 Identities=9% Similarity=-0.066 Sum_probs=170.3
Q ss_pred CeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeec------CCCCceEEEEeCCCCceeeEeccccCc-----
Q 002264 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEGTIKRTYAGFRKK----- 586 (945)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~d~~~~i~iwd~~~~~~~~~~~~~~~~----- 586 (945)
..+.+||..+++.......+... .++|+|||+.+++.+.. +..++.|.+||..+++.+..+..+...
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g 123 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred ceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceeccc
Confidence 34666688887777766655543 58899999999876531 123677999999999988877643321
Q ss_pred -ceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccc
Q 002264 587 -SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (945)
Q Consensus 587 -~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~ 664 (945)
....++|+|||++++++. .++.+.+||+.+++....+..+... . + +......++..+.||.+.+|+.......
T Consensus 124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--~--~-~~~~~~~~v~~~~Dg~~~~~~~~~~~~~ 198 (368)
T d1mdah_ 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--H--I-HPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--C--C-EEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--e--E-ccCCCceEEEEcCCCCEEEEEecCCcee
Confidence 133589999999998876 6799999999999999988765431 1 1 1122345666677888888887655322
Q ss_pred cccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccc
Q 002264 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (945)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (945)
...............+..+.+.+++..+.+ ..+.+.+++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------------------------------------~~~~v~~~~~~ 239 (368)
T d1mdah_ 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWA---------------------------------------VASSILQGDIP 239 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEEC---------------------------------------BSSCCEEEECC
T ss_pred eeeeecccccccccceeecccccCcEEEEe---------------------------------------cCCCEEEEeec
Confidence 221111111111222334445555444321 11223332222
Q ss_pred eeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCccccccc
Q 002264 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (945)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (945)
. .......... ..........+.
T Consensus 240 ~----~~~~~~~~~~--~~~~~~~~~~~~--------------------------------------------------- 262 (368)
T d1mdah_ 240 A----AGATMKAAID--GNESGRKADNFR--------------------------------------------------- 262 (368)
T ss_dssp S----SCCEEECCCC--SSCTHHHHTTEE---------------------------------------------------
T ss_pred C----CceEEEeecc--cccceeeeeeec---------------------------------------------------
Confidence 1 0000000000 000000000001
Q ss_pred ccCCCcCCceeEEeecCCCceEEecC----------CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCc--eEEEee
Q 002264 825 VAGVNLEEAVPCIALSKNDSYVMSAT----------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGT 892 (945)
Q Consensus 825 l~~~~~~~~i~~l~~s~dg~~la~~s----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~--~lasg~ 892 (945)
......+++++++..+++.. ...|.+||..+++.+.++. +...+.+++|+| ||+ +++++.
T Consensus 263 ------~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~ 334 (368)
T d1mdah_ 263 ------SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSA 334 (368)
T ss_dssp ------ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEET
T ss_pred ------CCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeC
Confidence 11122345555555443331 1358999999999888876 345789999999 765 456777
Q ss_pred cCceEEEEecccceEEEEecCC
Q 002264 893 EDSTIHIYNVRVDEVKSKLKGH 914 (945)
Q Consensus 893 ~dg~v~vwd~~~~~~~~~l~~h 914 (945)
.|+.|+|||..+|+.+..+...
T Consensus 335 ~~~~v~v~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 335 GTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp TTTEEEEEESSSCEEEEECCCC
T ss_pred CCCeEEEEECCCCCEEEEEECC
Confidence 8999999999999999988754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.49 E-value=3.1e-14 Score=150.35 Aligned_cols=328 Identities=12% Similarity=0.011 Sum_probs=202.9
Q ss_pred CCCeEEEEEeCcCcEEEEEcCCCCccccccc------ccccccccCccc-----ccccccCCCccEEEEEEcCCCCEEEE
Q 002264 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPF-----QASIFKDVPISVSRVAWSPDGNYVGV 423 (945)
Q Consensus 355 ~g~~llasgs~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~h~~~V~~i~~s~~g~~las 423 (945)
|.-|.++||+.+|.|+||++.+++.+....+ +.|-........ .......|........++|||++|++
T Consensus 9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV 88 (441)
T d1qnia2 9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFI 88 (441)
T ss_dssp CSEEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEE
T ss_pred CCEEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEE
Confidence 4456788999999999999999887653221 111111000000 01112335556777778899999976
Q ss_pred EE-CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCC-----------------cEEEEe-CCC
Q 002264 424 AF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----------------LIKVWE-LSG 484 (945)
Q Consensus 424 ~~-~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~-----------------~i~vwd-~~~ 484 (945)
.. .+..|.++|+++++..+.+ .+ .+...+..++|+|+|+..+++..+.+. .+..+| .+.
T Consensus 89 ~d~~~~rVavIDl~t~k~~~ii-~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~ 166 (441)
T d1qnia2 89 NDKANTRVARIRLDIMKTDKIT-HI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM 166 (441)
T ss_dssp EETTTTEEEEEETTTTEEEEEE-EC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred EcCCCCEEEEEECCCCcEeeEE-ec-CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence 65 5788999999998765522 11 356789999999999975665555432 124467 566
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCC-eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
+...++... .....+.++| +|+++++.+.+. .+..++..+......+... ..-..+.++++|+++..++ +
T Consensus 167 ~v~~qI~v~-~~p~~v~~sp--dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~~-----~ 237 (441)
T d1qnia2 167 DVAWQVIVD-GNLDNTDADY--TGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGD-----S 237 (441)
T ss_dssp SEEEEEEES-SCCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCTT-----C
T ss_pred eeeEEEecC-CCccceEECC--CCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEecCCCEEEeCC-----C
Confidence 655555432 3456777766 667888777553 2333333222222111100 0111234568899876653 6
Q ss_pred ceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCee-----------EEEeecCCCCCC
Q 002264 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-----------LTSTDAEGGLPN 631 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~ 631 (945)
+.+.+++....+.+..+..... ...+.++|||+++++++ .+++|.+||+.+... +.. ...... .
T Consensus 238 ~v~vvd~~~~~~v~~~IPvgks--PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~-~~~~gl-g 313 (441)
T d1qnia2 238 KVPVVDGRGESEFTRYIPVPKN--PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA-EPELGL-G 313 (441)
T ss_dssp CCCEEECSSSCSSEEEECCBSS--CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE-CCBCCS-C
T ss_pred CcEEEEcccCCceEEEEeCCCC--ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe-eccccc-C
Confidence 6777787777777777776543 56799999999887654 899999999865221 111 111111 2
Q ss_pred ccEEEEcCCCCEEEEEECCCcEEEEECCCC---------ccccccccCCccccccCcceeeeecccccceeccCC
Q 002264 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG---------LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (945)
Q Consensus 632 v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~ 697 (945)
....+|+++|....+..-|..|..|++... ......+.-|-...+...+.+.+++|||++|+++..
T Consensus 314 plh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 314 PLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred cccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 345689999988888889999999998421 122333333333445555677788888888887644
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.7e-08 Score=101.53 Aligned_cols=224 Identities=11% Similarity=0.108 Sum_probs=137.8
Q ss_pred ccCCCccEEEEEEcCCCCEEEEEECCC---cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEE
Q 002264 402 FKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (945)
Q Consensus 402 ~~~h~~~V~~i~~s~~g~~las~~~dg---~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~ 478 (945)
+..+...+.+.+|||||+.||...... .+.+.+..++... .+..+.+......|+|+|+.+ +.....++...
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~ 108 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLN 108 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCE
T ss_pred EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCccc
Confidence 334567788999999999999775543 3666676665432 344577888999999999953 33333343333
Q ss_pred EEe--CCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEE--EccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 479 vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
++. ....................+.+.. ...+++...+|...+| ++..... ..............|+|+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~ 186 (269)
T d2hqsa1 109 LYVMDLASGQIRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV 186 (269)
T ss_dssp EEEEETTTCCEEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEE
T ss_pred eeecccccccceeeeecccccccccccccc-ccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeE
Confidence 333 3333333333344444444454433 2345555556654444 4444332 23344455677889999999999
Q ss_pred EEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEEC---CCcEEEEECCCCeeEEEeecCCCCCC
Q 002264 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPN 631 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (945)
..... .+...+.+.+...+..... . ... ......|+|||+.|+..+. ...|+++++..+....... .. ..
T Consensus 187 ~~~~~-~~~~~i~~~~~~~~~~~~~-~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~-~~--g~ 259 (269)
T d2hqsa1 187 MVSSN-GGQQHIAKQDLATGGVQVL-S-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA-TD--GQ 259 (269)
T ss_dssp EEEEC-SSCEEEEEEETTTCCEEEC-C-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC-SS--SE
T ss_pred EEeec-CCceeeeEeecccccceEe-e-cCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC-CC--Cc
Confidence 87752 2345666677666554322 2 222 4566789999999987663 3468999998776654333 22 25
Q ss_pred ccEEEEcC
Q 002264 632 LPRLRFSK 639 (945)
Q Consensus 632 v~~v~~sp 639 (945)
+...+|||
T Consensus 260 ~~~p~WSP 267 (269)
T d2hqsa1 260 VKFPAWSP 267 (269)
T ss_dssp EEEEEECC
T ss_pred EEeEEeCC
Confidence 67888998
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.13 E-value=8.6e-09 Score=108.60 Aligned_cols=292 Identities=10% Similarity=-0.000 Sum_probs=152.4
Q ss_pred EEEeCCCCcee--eEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeeEEEeecCCCCCCccEEEEcCCCCE
Q 002264 567 VEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (945)
Q Consensus 567 ~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~ 643 (945)
..+|..++++. ..........+..++++++++.+++... +.+..|.+.. +.......... ......++++++++.
T Consensus 19 ~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~-~~~p~~v~~~~~~~~ 96 (365)
T d1jofa_ 19 VQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI-GGHPRANDADTNTRA 96 (365)
T ss_dssp EEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC-CSSGGGGCTTSCCEE
T ss_pred EEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC-CCCcEEEEECCCCCE
Confidence 34555555532 2222222224566999999999998765 4677776653 33332222111 124578889999985
Q ss_pred EEEEE---CCCcEEEEECCCCcccccccc----CC-------ccccccCcceeeeecccccceeccCCCCCccccccCCC
Q 002264 644 LAVTT---ADNGFKILANAIGLRSLRAVE----NP-------PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (945)
Q Consensus 644 l~~~~---~dg~i~iw~~~~~~~~~~~~~----~~-------~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (945)
+.... ..+.+..+............. +. ........+.+++|+|||+++++..
T Consensus 97 ~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d------------- 163 (365)
T d1jofa_ 97 IFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD------------- 163 (365)
T ss_dssp EEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-------------
T ss_pred EEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee-------------
Confidence 44332 245666555432111110000 00 0000112256788888888775321
Q ss_pred CCCCcccCCCCCccCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-cCeE
Q 002264 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQ 788 (945)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i 788 (945)
.....|.+|+................. .......++|+|+|+++.+... +++|
T Consensus 164 -----------------------~g~d~v~~~~~~~~g~~~~~~~~~~~~---~g~gPr~i~f~pdg~~~yv~~e~~~~V 217 (365)
T d1jofa_ 164 -----------------------LTANKLWTHRKLASGEVELVGSVDAPD---PGDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp -----------------------TTTTEEEEEEECTTSCEEEEEEEECSS---TTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred -----------------------CCCCEEEEEEccCCCceeeccceeecC---CCCceEEEEECCCCceEEEeccCCCEE
Confidence 222345555433211111111111221 3467889999999998876665 7899
Q ss_pred EEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecC--CC-----eEEEEeccC
Q 002264 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GG-----KISLFNMMT 861 (945)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~s--d~-----~i~iwd~~~ 861 (945)
.+|++....... ........++......... ...........+.++|||++|+++. ++ .|..|++..
T Consensus 218 ~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~ 291 (365)
T d1jofa_ 218 CEYVIDPATHMP---VYTHHSFPLIPPGIPDRDP---ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEEECTTTCCE---EEEEEEEESSCTTCCCBCT---TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred EEEEecCCCceE---EEEeeeecccccccccccc---ccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence 999986432111 1111111111111100000 0011344567889999999998874 22 377777654
Q ss_pred c-eEE-----EEecCCCCCeeEEEeecCCCceEEEe-ecCceEEEEecccc
Q 002264 862 F-KVM-----TTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNVRVD 905 (945)
Q Consensus 862 ~-~~~-----~~~~~h~~~i~~l~~s~~~~~~lasg-~~dg~v~vwd~~~~ 905 (945)
. ... ...........+++++|.+|++|+++ ..++.|.||++...
T Consensus 292 ~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 292 CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 2 211 11122334567899998567766555 67789999987654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.10 E-value=2.8e-08 Score=101.69 Aligned_cols=241 Identities=10% Similarity=0.055 Sum_probs=156.7
Q ss_pred CcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEE
Q 002264 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (945)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~ 413 (945)
|.+++..+.-...+..++++|||+ |+++...+++|..|+....... +......+.+++
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gla 74 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGLA 74 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEEE
T ss_pred cccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceEE
Confidence 445555666555799999999998 7889888999888885532211 333556899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec-
Q 002264 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE- 491 (945)
Q Consensus 414 ~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~- 491 (945)
|++||+++++...++.+..|+......................+++.+++. ++++.+.++.+..+| ..+.......
T Consensus 75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~ 152 (302)
T d2p4oa1 75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEH 152 (302)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEecC
Confidence 999999999998888888888765432221111123455688999999998 788888888888888 4443221111
Q ss_pred ---------CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE--ecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 492 ---------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 492 ---------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
........+.+. ++.++++.+..+.|..+++........ ..........+++.++|+..++...
T Consensus 153 ~~~~~~~~~~~~~~~ngi~~~---~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~-- 227 (302)
T d2p4oa1 153 PMLARSNSESVFPAANGLKRF---GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI-- 227 (302)
T ss_dssp GGGSCSSTTCCSCSEEEEEEE---TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT--
T ss_pred CccceeeccCccccccccccc---CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC--
Confidence 111234555543 235677777888888888765433221 1112223456999999987666543
Q ss_pred CCCceEEEEeCCCCceeeEecccc-CcceEEEEE---cCCCCEEEEEECC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQF---DTTQNHFLAVGED 606 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~l~~~~~d 606 (945)
++.|..++... +......... ....+.++| ++|++.|++++..
T Consensus 228 --~~~V~~i~p~G-~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 228 --YNSVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp --TCCEEEECTTC-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCcEEEECCCC-CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 67898888753 3332222211 124678999 6677888877654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=2.3e-08 Score=100.62 Aligned_cols=241 Identities=13% Similarity=0.069 Sum_probs=150.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCeEEEEEeCcC--cEEEEEcCCCCcccccccccccccccCcccccccccC
Q 002264 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (945)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fsp~g~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (945)
+|-++........++.+...+..-+|||||++|+++....+ .+.+.+..++... .+..
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 80 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------QVAS 80 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--------------------EEEC
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee--------------------EEee
Confidence 44443333455666677888999999999998666655444 3555555544432 2445
Q ss_pred CCccEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEE--e
Q 002264 405 VPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW--E 481 (945)
Q Consensus 405 h~~~V~~i~~s~~g~~las~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vw--d 481 (945)
+........|||+|+.++.... ++...++......... ..............+++++.. .+++...++...+| +
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEE
T ss_pred eecccccceecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeee
Confidence 7788899999999999987654 3333333332221111 122234455566778888885 45555566655555 4
Q ss_pred CCCceEEEecCCCCCEEEEEeeecCCccEEEEEE-cCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecC
Q 002264 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (945)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 560 (945)
..+.....+...........|+| ++..++..+ ..+...+|..+...................|+|||+.|+..+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~- 234 (269)
T d2hqsa1 158 INGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ- 234 (269)
T ss_dssp TTSSCCEECCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-
T ss_pred cccccceeeeccccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-
Confidence 55555555666666677777766 455665554 44555566555544444444555566788999999999877642
Q ss_pred CCCceEEEEeCCCCceeeEeccccCcceEEEEEcC
Q 002264 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (945)
Q Consensus 561 d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (945)
.+...|+++++..+...+ +..... .+...+|+|
T Consensus 235 ~~~~~l~~~~~dg~~~~~-lt~~~g-~~~~p~WSP 267 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRFKAR-LPATDG-QVKFPAWSP 267 (269)
T ss_dssp TTEEEEEEEETTSCCEEE-CCCSSS-EEEEEEECC
T ss_pred CCCcEEEEEECCCCCEEE-EeCCCC-cEEeEEeCC
Confidence 346689999998776544 333333 566788887
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=4.1e-08 Score=106.56 Aligned_cols=343 Identities=8% Similarity=0.036 Sum_probs=184.9
Q ss_pred EEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEecCC---CCCEEEEEeeecCCccEEEEEE---------cCCeEEEE
Q 002264 457 LAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTA---------IDGKIKAW 523 (945)
Q Consensus 457 l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~---------~dg~i~iw 523 (945)
..|.+++. ++. -..+|.|.+|| .+++....+... ...+....|+| |+++++... ..+.+.++
T Consensus 22 ~~W~~~~~--~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp--D~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 22 AKWISDTE--FIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CCBSSSSC--BCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred CEEeCCCc--EEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC--CCCeEEEEEcccceeEeeccccEEEE
Confidence 35888887 444 35578999999 666553333332 22455555655 667777654 35678899
Q ss_pred EccCCCeeEEec--CCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCc---------------
Q 002264 524 LYDTMGSRVDYD--APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--------------- 586 (945)
Q Consensus 524 d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~--------------- 586 (945)
|+.++....... .....+....|||||+.++... ++.|++.+..++..++........
T Consensus 97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-----~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~ 171 (465)
T d1xfda1 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (465)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EccCCceeeccCccCCccccceeeeccCCceEEEEe-----cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence 998876544322 2233556688999999999886 778999998877665544322111
Q ss_pred --ceEEEEEcCCCCEEEEEE-CCCcEE---------------------------------EEECCCCeeEEEeecCC---
Q 002264 587 --SNGVVQFDTTQNHFLAVG-EDSQIK---------------------------------FWDMDNVNILTSTDAEG--- 627 (945)
Q Consensus 587 --~~~~~~~~~~~~~l~~~~-~dg~i~---------------------------------iwd~~~~~~~~~~~~~~--- 627 (945)
.-..+.|||||++|+... .+..+. ++|+.++..........
T Consensus 172 ~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~ 251 (465)
T d1xfda1 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (465)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCc
Confidence 124678999999999865 233333 33333322211111000
Q ss_pred -CCCCccEEEEcCCCCEEEEEEC-C---CcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCcc
Q 002264 628 -GLPNLPRLRFSKEGNLLAVTTA-D---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (945)
Q Consensus 628 -~~~~v~~v~~sp~g~~l~~~~~-d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~ 702 (945)
...-+..+.|+|++++++.... + ..|.++|..++.. ..........-....-....|++||+.++.-
T Consensus 252 ~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~-~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi------- 323 (465)
T d1xfda1 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEEPVFSKDGRKFFFI------- 323 (465)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCCCCEECTTSCSEEEE-------
T ss_pred cccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcE-EEEEEEcCCceEeccCCceeEccCCCeeEEE-------
Confidence 0012456889999886665433 2 2577888888732 2222111110000112235677777654310
Q ss_pred ccccCCCCCCCcccCCCCCccCCCCCccccCCCCCCcccccce-----eecCCcceeeecCCCCCCccceEE-EEEecCC
Q 002264 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE-----IVDSGQCRLVTMPESTDTSSKVVR-LLYTNSA 776 (945)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~dg 776 (945)
.....+|.-.++.+.- .......+.++ . ..-.|.. +++++++
T Consensus 324 ---------------------------~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT--~---G~w~V~~i~~~d~~~ 371 (465)
T d1xfda1 324 ---------------------------RAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--S---GDWDVTKILAYDEKG 371 (465)
T ss_dssp ---------------------------EEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--C---SSSCEEEEEEEETTT
T ss_pred ---------------------------EeeeecccCceEEEEeccccccCCCceeEEec--c---CCceEEEEEEEcCCC
Confidence 0011112112221110 00011111111 1 2333444 3688888
Q ss_pred CeEEEeee-c--CeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCceEEecCCC-
Q 002264 777 VGLLALGS-N--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGG- 852 (945)
Q Consensus 777 ~~l~~~~~-d--g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~la~~sd~- 852 (945)
+.+...+. + +.-+||.+.... ....+++...+. ......++.||||+++++....|
T Consensus 372 ~~vyF~a~~~~p~~~hly~v~l~g-----------------~~~~~~lt~~~~---~~~~~~~~~~S~~~~y~v~~~s~~ 431 (465)
T d1xfda1 372 NKIYFLSTEDLPRRRQLYSANTVG-----------------NFNRQCLSCDLV---ENCTYFSASFSHSMDFFLLKCEGP 431 (465)
T ss_dssp TEEEEEESSSCTTCCEEEEECSST-----------------TCCCBCSSTTSS---SSCCCCEEEECTTSSEEEEECCSS
T ss_pred CEEEEEEeCCCCCceEEEEEECCC-----------------CCcceeeccccC---CCCCEEEEEECCCCCEEEEEeecC
Confidence 77754443 2 344566543211 111112221121 34567799999999999865432
Q ss_pred ---eEEEEeccCceEEEEec
Q 002264 853 ---KISLFNMMTFKVMTTFM 869 (945)
Q Consensus 853 ---~i~iwd~~~~~~~~~~~ 869 (945)
.+.+++..+++.+..++
T Consensus 432 ~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 432 GVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp SSCCEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEc
Confidence 38888988888888876
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.02 E-value=3.4e-07 Score=96.08 Aligned_cols=75 Identities=13% Similarity=0.020 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CeeE--EEeecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEECCCC
Q 002264 587 SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIG 661 (945)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~~~~ 661 (945)
.+.++.|+|+|+++++++ ....|.+|+... +... ..............++|+|+|+++++... +++|.+|+...+
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 477899999999998887 345788887654 3222 22222222235688999999999877665 788999998755
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.97 E-value=3.5e-07 Score=92.04 Aligned_cols=243 Identities=10% Similarity=0.086 Sum_probs=165.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceee---ccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCC
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~ 484 (945)
....|+++++|+.+++-..+..|++||.+ |+.+..+... .+.......+++.++....+++..+.++.|..++..+
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 46899999999988887778889999965 4444322111 1122245667777766543444445566888888888
Q ss_pred ceEEEecC-CCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe--cCCCCeEEEEEEcCCCCEEEEEeecCC
Q 002264 485 RKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLFSCGTSKD 561 (945)
Q Consensus 485 ~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~~~d 561 (945)
.....+.. .......+++.+ ++.++++....+.+.+++.+ ++....+ ..+......+++.++++.+++...
T Consensus 103 ~~~~~~~~~~~~~p~~~avd~--~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~--- 176 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR--- 176 (279)
T ss_dssp CEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG---
T ss_pred cceeecCCCcccccceecccc--CCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecc---
Confidence 87777643 344567777754 56777777777888888754 3333433 233446788999999887666553
Q ss_pred CCceEEEEeCCCCceeeEeccc-cCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 562 GDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
.+.|++||.. ++.+..+... .......++++++|+.+++-. .++.|.+|+. +|+.+..+...........+++.|
T Consensus 177 -~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 177 -AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp -GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred -ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence 7789999964 5666666321 122467899999999776654 3456999984 678777776554444678999999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 002264 640 EGNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 640 ~g~~l~~~~~dg~i~iw~~~~~ 661 (945)
||.++ +++.++.|++|.....
T Consensus 254 dG~l~-V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 254 DGSVV-LASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTEEE-EEETTTEEEEEECSCC
T ss_pred CCcEE-EEeCCCeEEEEEeeee
Confidence 99755 4567899999988654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.95 E-value=3.3e-07 Score=93.69 Aligned_cols=250 Identities=14% Similarity=0.075 Sum_probs=157.0
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeC-------cCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSS-------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 415 (945)
.-.....++|.|+|+ +.++... +|+|..||..++...... ........+.-..++|+
T Consensus 16 ~~~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~---------------~~~~~~~~g~P~Gl~~~ 79 (314)
T d1pjxa_ 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---------------KPEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEE---------------CCEETTEECCEEEEEEC
T ss_pred CCCCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEE---------------CCccccCCCcceeEEEe
Confidence 334567889999998 4554322 357888888776543210 00011112346789999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEeC---------------CCcEEE
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---------------DKLIKV 479 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~---------------d~~i~v 479 (945)
++|+.|+++...+.|...+.+++..........+.. .....+++.++|. +.++-.. +|.|..
T Consensus 80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~ 157 (314)
T d1pjxa_ 80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEE
Confidence 999988888877778888887653221111111111 1367899999998 5565321 234555
Q ss_pred EeCCCceEEEecCCCCCEEEEEeeecCCc---cEEEEEEcCCeEEEEEccCCCeeE------EecCC-CCeEEEEEEcCC
Q 002264 480 WELSGRKLFNFEGHEAPVYSICPHHKENI---QFIFSTAIDGKIKAWLYDTMGSRV------DYDAP-GHWCTTMLYSAD 549 (945)
Q Consensus 480 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~-~~~i~~~~~s~~ 549 (945)
++..++..... ..-..-+.++|++.+++ .++++-+..+.|..||+....... .+... ......+++..+
T Consensus 158 ~~~dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~ 236 (314)
T d1pjxa_ 158 FTTDGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236 (314)
T ss_dssp ECTTSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred EeecCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence 55556544333 23344578899886543 244555678889999876544332 11111 224568999999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEE-EECCCcEEEEECCC
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (945)
|+..++.. +.+.|.+||...++....+..... ...+++|.++++.|++ .+.+|.|+.+++..
T Consensus 237 GnlyVa~~----~~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 237 NNLLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CCEEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CcEEEEEc----CCCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 99776654 378899999988887776665443 5788999999876555 45678888887643
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=8.7e-08 Score=95.44 Aligned_cols=240 Identities=7% Similarity=-0.018 Sum_probs=148.4
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
+......++++++|..+++..+..+.|..++......... ...+ ......++++++|++++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------~~~~-~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------PFNG-LYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------CCCS-CCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------ccCC-ccCceEEEEcCCCCEEE
Confidence 4457899999999984444445557777776544322210 0111 12356789999999887
Q ss_pred EEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEE
Q 002264 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (945)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~ 501 (945)
+....+.+++++-.++..+. .. .......++++.++++ ++++-..+..+..++..+.....+. .......+++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 77666666666544433222 11 2234578999999998 6676666777888884444333322 2233456788
Q ss_pred eeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec
Q 002264 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~ 581 (945)
+.+ +++++++...++.|..++.+.................+++.++|+.+++.. ..+.|..++..... ...+.
T Consensus 147 ~~~--~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~----~~~~i~~~~~~~~~-~~~~~ 219 (260)
T d1rwia_ 147 VDN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTT-STVLP 219 (260)
T ss_dssp ECT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTTEEEEECTTCSC-CEECC
T ss_pred ecC--CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec----CCCEEEEEeCCCCe-EEEEc
Confidence 765 557888888888999998776544433333445678899999998776654 36778888765443 22222
Q ss_pred cccCcceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (945)
...-.....++++++|+.+++-..++.|+.++.
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 222124677999998887666556666665543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3.6e-08 Score=107.09 Aligned_cols=146 Identities=8% Similarity=-0.041 Sum_probs=96.0
Q ss_pred EEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEecccc--CcceEEEEEcCCCCEEEEEEC---------CCcEEEE
Q 002264 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGE---------DSQIKFW 612 (945)
Q Consensus 544 ~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~---------dg~i~iw 612 (945)
..|.+++.++... .++.|.+||+.+++....+.... ...+....++||+++++.... .+.+.++
T Consensus 22 ~~W~~~~~~~~~~-----~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 22 AKWISDTEFIYRE-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CCBSSSSCBCCCC-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred CEEeCCCcEEEEe-----CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence 3577888766532 36789999999887654444322 224566789999999888753 5678999
Q ss_pred ECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccc------------cCcc
Q 002264 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEAL------------RTPI 680 (945)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------------~~~i 680 (945)
|+.++..............+....|||||+.+|... ++.|.+.+..++.....+..+...... ...-
T Consensus 97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~ 175 (465)
T d1xfda1 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (465)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence 999888655443333334567799999999999876 567888887766332222222111110 1112
Q ss_pred eeeeecccccceecc
Q 002264 681 ESVALKVSASSAVSS 695 (945)
Q Consensus 681 ~~v~~s~~g~~l~~~ 695 (945)
..+-|||||+.||..
T Consensus 176 ~a~~WSPDgk~iaf~ 190 (465)
T d1xfda1 176 IAHWWSPDGTRLAYA 190 (465)
T ss_dssp EEEEECTTSSEEEEE
T ss_pred ceEEECCCCCeEEEE
Confidence 456799999999874
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=1.3e-07 Score=94.22 Aligned_cols=237 Identities=8% Similarity=-0.018 Sum_probs=148.2
Q ss_pred ccEEEEEEcCCCCEEEEE-ECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCC
Q 002264 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (945)
Q Consensus 407 ~~V~~i~~s~~g~~las~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~ 484 (945)
.....|+++++|+..++. +..+.+..++..+..... ....+ ......++++++|. ++++....+.+++++ .++
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~--~~~~~-~~~p~gvav~~~g~--i~v~d~~~~~i~~~~~~~~ 88 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--LPFNG-LYQPQGLAVDGAGT--VYVTDFNNRVVTLAAGSNN 88 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE--CCCCS-CCSCCCEEECTTCC--EEEEETTTEEEEECTTCSC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE--eccCC-ccCceEEEEcCCCC--EEEeeeeeceeeeeeeccc
Confidence 456899999999976654 445667777655432211 11222 23457889999998 777777777777666 444
Q ss_pred ceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCc
Q 002264 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (945)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~ 564 (945)
..+.... ......++++.+ +++++++-..+..+..++...................++++++++.+++... .+
T Consensus 89 ~~~~~~~-~~~~p~~iavd~--~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~----~~ 161 (260)
T d1rwia_ 89 QTVLPFD-GLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 161 (260)
T ss_dssp CEECCCC-SCCSEEEEEECT--TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGG----GT
T ss_pred eeeeeee-eeeecccccccc--cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccc----cc
Confidence 4433332 234567888765 5567776666777777765544333322222234568899999987766553 67
Q ss_pred eEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEE
Q 002264 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (945)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 644 (945)
.|..+|.............. .....++++++|+.+++....+.|..++..... ...+.. ........++++++|.++
T Consensus 162 ~i~~~d~~~~~~~~~~~~~~-~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~-~~~~~P~~i~~d~~g~l~ 238 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPF-TGLNTPLAVAVDSDRTVY 238 (260)
T ss_dssp EEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCC-CSCCCEEEEEECTTCCEE
T ss_pred cccccccccceeeeeecccc-CCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEcc-CCCCCeEEEEEeCCCCEE
Confidence 89999977554333222222 246779999999887777778888888765543 222222 222356789999999887
Q ss_pred EEEECCCcEEEEEC
Q 002264 645 AVTTADNGFKILAN 658 (945)
Q Consensus 645 ~~~~~dg~i~iw~~ 658 (945)
++-..+++|+.++.
T Consensus 239 vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 239 VADRGNDRVVKLTS 252 (260)
T ss_dssp EEEGGGTEEEEECC
T ss_pred EEECCCCEEEEEeC
Confidence 77666676765544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.86 E-value=1.7e-06 Score=86.88 Aligned_cols=196 Identities=12% Similarity=0.127 Sum_probs=130.5
Q ss_pred cEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC------CCCEEEEEeeecCCccEEEE-EEcCCeEEEEEc
Q 002264 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH------EAPVYSICPHHKENIQFIFS-TAIDGKIKAWLY 525 (945)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~ 525 (945)
....++++++|+ ++++-...+.|++||.+|+.+..+... ......+++.... +..+++ .+.++.|..++.
T Consensus 24 ~P~gvavd~dg~--i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQND--IIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCC--EEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEEEECT
T ss_pred CccEEEEcCCCC--EEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccc-cccceeccCCccccccccc
Confidence 468899999998 788877788999999889888777421 1223455554433 334443 345567777764
Q ss_pred cCCCeeEEecC-CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccc-cCcceEEEEEcCCCCEEEEE
Q 002264 526 DTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 526 ~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 603 (945)
. +.....+.. .......+++.++|+.+++... .+.+.+++. +++.+..+... .......+++.++++.+++.
T Consensus 101 ~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~----~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 101 Y-GQFVRKFGATILQHPRGVTVDNKGRIIVVECK----VMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp T-SCEEEEECTTTCSCEEEEEECTTSCEEEEETT----TTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred c-ccceeecCCCcccccceeccccCCcEEEEeec----cceeeEecc-CCceeecccccccccccceeeeccceeEEeee
Confidence 3 333333322 2346788999999987776543 667888885 45566655322 12246778899998888787
Q ss_pred ECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC-CCcEEEEEC
Q 002264 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (945)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-dg~i~iw~~ 658 (945)
...+.|++||. +++.+..+...+.......+++.++|+++++-.. ++.|.+|+.
T Consensus 175 ~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 175 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred ccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence 78899999997 4566666654444445678999999987766443 345777653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.84 E-value=2.1e-07 Score=94.94 Aligned_cols=228 Identities=15% Similarity=0.083 Sum_probs=149.2
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CC-Cc
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GR 485 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~-~~ 485 (945)
.+..++++|||+++++...+++|..|+.... .. .+......+.+++|+++|+ ++++...++.+..|+ .. ..
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~---~~~~~~~~~~gla~~~dG~--l~v~~~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQ---IHATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSDG 101 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EE---EEEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTTS
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EE---EEEcCCCCcceEEEcCCCC--eEEEecCCceEEEEEeccccc
Confidence 5889999999999999988998888886543 22 2344667899999999999 788877788888777 22 22
Q ss_pred eEEEec--CCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC----------CCCeEEEEEEcCCCCEE
Q 002264 486 KLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----------PGHWCTTMLYSADGSRL 553 (945)
Q Consensus 486 ~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~l 553 (945)
....+. ........+++.+ ++.++++.+.++.+..++............ .......+.+. +..+
T Consensus 102 ~~~~~~~~~~~~~~n~i~~~~--~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l 177 (302)
T d2p4oa1 102 TVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFL 177 (302)
T ss_dssp CEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEE
T ss_pred ceeeccccCCccccceeEEcc--CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCce
Confidence 222221 2345577888755 668888888888888888776543332211 11134555554 4555
Q ss_pred EEEeecCCCCceEEEEeCCCCceeeEecc-ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCc
Q 002264 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (945)
Q Consensus 554 ~~~~~~~d~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (945)
+.+.. ..+.|+.++............ ........++++++|+.+++...++.|..++.. ++..............
T Consensus 178 ~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~p 253 (302)
T d2p4oa1 178 YVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGS 253 (302)
T ss_dssp EEEET---TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred eeecC---CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCc
Confidence 55543 477888888765432211110 011134569999999988887788999999875 4433333333333357
Q ss_pred cEEEE---cCCCCEEEEEECC
Q 002264 633 PRLRF---SKEGNLLAVTTAD 650 (945)
Q Consensus 633 ~~v~~---sp~g~~l~~~~~d 650 (945)
++++| ++|++.|++++..
T Consensus 254 t~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 254 TAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEEECCSTTTTTEEEEEECT
T ss_pred eEEEEcCCCCCCCEEEEECCC
Confidence 89999 6788888876654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.83 E-value=1.4e-06 Score=88.96 Aligned_cols=242 Identities=11% Similarity=0.044 Sum_probs=150.3
Q ss_pred cEEEEEEcCCCCEEEEEEC-------CCcEEEEEccCCcccccc-eeeccccccEEEEEEecCCCeeEEEEEeCCCcEEE
Q 002264 408 SVSRVAWSPDGNYVGVAFT-------KHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~-------dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~v 479 (945)
....++|.++|+++++... +|.|..||.+++...... .......+....++|.+++. .++++...+.+..
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~--~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC--EEEEEECCCeEEE
Confidence 4567899999998876432 467888998876532210 01111223467899999998 5666666677888
Q ss_pred EeCCCceEEEecCC-CC----CEEEEEeeecCCccEEEEEEc---------------CCeEEEEEccCCCeeEEecCCCC
Q 002264 480 WELSGRKLFNFEGH-EA----PVYSICPHHKENIQFIFSTAI---------------DGKIKAWLYDTMGSRVDYDAPGH 539 (945)
Q Consensus 480 wd~~~~~~~~~~~~-~~----~v~~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~ 539 (945)
.+.++.....+... .+ ..+.+++.+ +|.+.++-.. .|.| |.+........+...-.
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~--~G~lyvtd~~~~~~~~~~~~~~~~~~G~v--~~~~~dg~~~~~~~~~~ 172 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSI--YCFTTDGQMIQVDTAFQ 172 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEE--EEECTTSCEEEEEEEES
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECC--CCCEEEecCccCcccccccceeccCCceE--EEEeecCceeEeeCCcc
Confidence 88666544333221 11 246677755 5666665322 2233 33332222222222222
Q ss_pred eEEEEEEcCCCC----EEEEEeecCCCCceEEEEeCCCCcee------eEeccccCcceEEEEEcCCCCEEEEEECCCcE
Q 002264 540 WCTTMLYSADGS----RLFSCGTSKDGDSFLVEWNESEGTIK------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (945)
Q Consensus 540 ~i~~~~~s~~~~----~l~~~~~~~d~~~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 609 (945)
..+.++|+++++ .|+++.. ..+.|+.||+.....+ ..+.+........+++..+|+..++....+.|
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~---~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I 249 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred eeeeeEECCCCCcceeEEEEEee---cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence 346788988765 4555432 3778888886543222 12222222235678999999988888888999
Q ss_pred EEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEE-EEECCCcEEEEECCC
Q 002264 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAI 660 (945)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~-~~~~dg~i~iw~~~~ 660 (945)
.+||.+.+..+..+..+.. ...+++|.||++.|+ +.+.+|.|..+++..
T Consensus 250 ~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 250 EVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 9999988887777765543 678999999998554 445668888887654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.69 E-value=1.2e-05 Score=82.13 Aligned_cols=233 Identities=12% Similarity=0.048 Sum_probs=148.1
Q ss_pred CCCcEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEE
Q 002264 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (945)
Q Consensus 343 h~~~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~la 422 (945)
....+..++|.++|+ |.++-...+.|..|+..+++... .+.........+++++||++++
T Consensus 38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~-------------------~~~~~~~~p~gla~~~dG~l~v 97 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGRLFV 97 (319)
T ss_dssp SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSCEEE
T ss_pred CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEE-------------------EEeCCCCCeeEEEECCCCCEEE
Confidence 344668999999998 78887778899989887654331 1223445678999999999887
Q ss_pred EEECC----CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC------CCcEEEEeCCCceEEEecC
Q 002264 423 VAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEG 492 (945)
Q Consensus 423 s~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~ 492 (945)
+...+ +.+...+..++...... .-..-......+++.++|. +.++... .+.+..++..+..+..+..
T Consensus 98 a~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~ 174 (319)
T d2dg1a1 98 CYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ 174 (319)
T ss_dssp EECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred EecCCCccceeEEEEcCCCceeeeec-cCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecccceeEEEee
Confidence 76432 23444444443322111 1111233578899999998 5555432 1235555655655555444
Q ss_pred CCCCEEEEEeeecCCcc-EEEEEEcCCeEEEEEccCCCeeEE--------ecCCCCeEEEEEEcCCCCEEEEEeecCCCC
Q 002264 493 HEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVD--------YDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (945)
Q Consensus 493 ~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~ 563 (945)
.-...+.++|++ +++ +.++-+..+.|..|+++....... ..........+++.++|+..++.. +.
T Consensus 175 ~~~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~----~~ 248 (319)
T d2dg1a1 175 NISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY----GQ 248 (319)
T ss_dssp EESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE----TT
T ss_pred ccceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc----CC
Confidence 444567889877 445 445666788999999875432111 111122456799999999776655 38
Q ss_pred ceEEEEeCCCCceeeEeccccC-----cceEEEEEcCCCCEEEEEEC
Q 002264 564 SFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVGE 605 (945)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~ 605 (945)
+.|.+||. +|+.+..+..... ..+.+++|.+....+++...
T Consensus 249 g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 249 GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 89999995 6888777653321 14678899988877777653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.67 E-value=2e-05 Score=80.35 Aligned_cols=230 Identities=11% Similarity=0.020 Sum_probs=144.1
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC----CcEEEEeCC
Q 002264 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELS 483 (945)
Q Consensus 408 ~V~~i~~s~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d----~~i~vwd~~ 483 (945)
.+..++|.++|++.++-...+.|..|+.++++... .+.........++|.+||. ++++...+ +.+...+..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~---~~~~~~~~p~gla~~~dG~--l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTT
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE---EEeCCCCCeeEEEECCCCC--EEEEecCCCccceeEEEEcCC
Confidence 45689999999977777788889999888765433 2334555688999999998 56654332 334445533
Q ss_pred CceEEEecCC---CCCEEEEEeeecCCccEEEEEEc------CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEE
Q 002264 484 GRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (945)
Q Consensus 484 ~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 554 (945)
+..+..+..+ ......+++.+ +|++.++... .+.+..++.+... ...+...-...+.++|+||++.|+
T Consensus 116 ~~~~~~~~~~~~~~~~~nd~~~d~--~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 116 GDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp SCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEE
T ss_pred CceeeeeccCCCcccCCcceeEEe--ccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEE
Confidence 3333332222 23467777755 5665555322 1234444433222 222222223457899999999876
Q ss_pred EEeecCCCCceEEEEeCCCC-ceeeEe------ccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCC
Q 002264 555 SCGTSKDGDSFLVEWNESEG-TIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (945)
Q Consensus 555 ~~~~~~d~~~~i~iwd~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (945)
.+-. ..+.|+.||+... ...... ..........++++.+|+..++....+.|.+||. .|+.+..+..+.
T Consensus 193 vad~---~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~ 268 (319)
T d2dg1a1 193 VTET---TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG 268 (319)
T ss_dssp EEEG---GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred Eecc---cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence 6643 3678999987532 211111 1111113567999999998888889999999995 688888886653
Q ss_pred ----CCCCccEEEEcCCCCEEEEEEC
Q 002264 628 ----GLPNLPRLRFSKEGNLLAVTTA 649 (945)
Q Consensus 628 ----~~~~v~~v~~sp~g~~l~~~~~ 649 (945)
+...+.+++|.+++..+++...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 269 RDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred cCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 2235789999998877766654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.48 E-value=9.3e-06 Score=81.31 Aligned_cols=236 Identities=10% Similarity=0.061 Sum_probs=128.8
Q ss_pred EEeCC--CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEEC-C
Q 002264 351 DFHPS--HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-K 427 (945)
Q Consensus 351 ~fsp~--g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~-d 427 (945)
..||| |++++++. +|.|.+.|+.+++... +..+.+.+...+|||||+.||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 99866664 5678888998876531 5567778899999999999986542 2
Q ss_pred -----CcEEEEEccCCccccccee---eccccccEEEEEEecCCCeeEEEEEeCC------CcEEEEeCCCceEEEecCC
Q 002264 428 -----HLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWELSGRKLFNFEGH 493 (945)
Q Consensus 428 -----g~i~vwd~~~~~~~~~~~~---~~~h~~~v~~l~~s~~~~~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~ 493 (945)
..|.+++..+++..+.... ............|+|+|+ .++..... ..+...+..+.........
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLNLG 140 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEecCC
Confidence 2377778777764431100 011223457789999999 45543221 1244445444433333222
Q ss_pred CCCEEEEEeeecCCccEEEEEEcCC-----------eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 494 EAPVYSICPHHKENIQFIFSTAIDG-----------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
..... +.+. ++..++....+. ............. .............++++ .++... +.++
T Consensus 141 --~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 212 (281)
T d1k32a2 141 --PATHI-LFAD-GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGH--RIYFIT-DIDG 212 (281)
T ss_dssp --SCSEE-EEET-TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETT--EEEEEE-CTTS
T ss_pred --cccee-eecC-CCeEEEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeecc--ccceec-cccc
Confidence 11122 2222 223333222111 1111221222211 22222223344445554 343333 2345
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEE
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (945)
...|+++|+.+++..+... ... .....|+|+|+.|+.. .++.|+++|+.+++....
T Consensus 213 ~~~l~~~d~~g~~~~~lt~-~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 213 FGQIYSTDLDGKDLRKHTS-FTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SCEEEEEETTSCSCEECCC-CCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred ccceEEEeCCCCceEEeec-CCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 6789999998776544322 222 2234689999988764 467899999988876543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.37 E-value=1e-05 Score=80.95 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=63.2
Q ss_pred EEcCC--CCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC-C-----CcEEEEECCCCcc
Q 002264 592 QFDTT--QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-D-----NGFKILANAIGLR 663 (945)
Q Consensus 592 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~-d-----g~i~iw~~~~~~~ 663 (945)
..+|+ |+.++..+ +|.|++.|+.+++........ ..+...+|||||+.||.... + ..|.+++..++..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~---~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNL---GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSS---SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCC---CcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence 35688 88888775 467999999998876544332 25788999999999986643 2 2377777777633
Q ss_pred ccccccCCccccccCcceeeeecccccceec
Q 002264 664 SLRAVENPPFEALRTPIESVALKVSASSAVS 694 (945)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~ 694 (945)
..-+................+|+|+|+.++.
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~ 111 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 111 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEE
Confidence 2211111111111223456789999998864
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.29 E-value=0.00027 Score=70.59 Aligned_cols=223 Identities=14% Similarity=0.071 Sum_probs=143.8
Q ss_pred EEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECC
Q 002264 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (945)
Q Consensus 348 ~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~d 427 (945)
.+..|++....|..+--..+.|.-||..+++... | .....+.++++.++|.++++ +.+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va-~~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIA-SDD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEE-ETT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------E---------------ECCCCcEEEEEecCCCEEEE-EeC
Confidence 4567887665567766567899999988875431 1 12346889999999987775 455
Q ss_pred CcEEEEEccCCcccccceeecc--ccccEEEEEEecCCCeeEEEEEeC----CCcEEEEe-CCCceEEEecCCCCCEEEE
Q 002264 428 HLIQLYSYAGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGD----DKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (945)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~~~l~s~s~----d~~i~vwd-~~~~~~~~~~~~~~~v~~~ 500 (945)
.+.++|..+++... +..... ....+.++.+.|+|. +.++... .+.-.+|. ..++...... .-...+.+
T Consensus 79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEE
T ss_pred -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEee-ccCCccee
Confidence 48899999876432 111111 223588999999998 4444321 23445666 4555443333 33346778
Q ss_pred EeeecCCccEEEEEEcCCeEEEEEccCCC------eeE--EecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCC
Q 002264 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMG------SRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (945)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~ 572 (945)
+|+++.+ .++++-+..+.|..|+++... ... ...........+++..+|+..++... .+.|..||.
T Consensus 154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp- 227 (295)
T d2ghsa1 154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT- 227 (295)
T ss_dssp EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT-
T ss_pred eecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC-
Confidence 8876432 355666678889989875422 111 22234456788999999987766542 678999995
Q ss_pred CCceeeEeccccCcceEEEEEc-CCCCEEEEEE
Q 002264 573 EGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (945)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 604 (945)
+++.+..+..... .+++++|. ++.+.|++.+
T Consensus 228 ~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEEE
Confidence 6888888776544 57888885 6766666554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.13 E-value=0.0018 Score=64.41 Aligned_cols=223 Identities=10% Similarity=0.033 Sum_probs=139.6
Q ss_pred EEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEec
Q 002264 456 DLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (945)
Q Consensus 456 ~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 535 (945)
+..|.+.... +..+--..+.|..||..+.....+. ....+.++++.. +|.+++ ++.+ .+..+|..+++......
T Consensus 22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~~~~-~~~~~~~i~~~~--dg~l~v-a~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 22 GPTFDPASGT-AWWFNILERELHELHLASGRKTVHA-LPFMGSALAKIS--DSKQLI-ASDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEE--TTEEEE-EETT-EEEEEETTTCCEEEEEC
T ss_pred CCeEECCCCE-EEEEECCCCEEEEEECCCCeEEEEE-CCCCcEEEEEec--CCCEEE-EEeC-ccEEeecccceeeEEee
Confidence 4568876654 3444445688999994433344443 345677888755 555555 4554 58889988876554332
Q ss_pred C----CCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEE
Q 002264 536 A----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIK 610 (945)
Q Consensus 536 ~----~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~ 610 (945)
. ....++.+.+.|+|++.++........+.-.+|.+..++......... ..+.++|+++++.++.+. ..+.|+
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~--~~Ng~~~s~d~~~l~~~dt~~~~I~ 173 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS--IPNSICFSPDGTTGYFVDTKVNRLM 173 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES--SEEEEEECTTSCEEEEEETTTCEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC--CcceeeecCCCceEEEeecccceee
Confidence 2 223688999999999877665433233445566666676655554332 456799999998776655 678899
Q ss_pred EEECCCC------eeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeee
Q 002264 611 FWDMDNV------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (945)
Q Consensus 611 iwd~~~~------~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 684 (945)
.|++... +................+++..+|++.++....+.|..|+.. + +.+..+.-.. ..+++++
T Consensus 174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G-~~~~~i~lP~-----~~~T~~~ 246 (295)
T d2ghsa1 174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-NHIARYEVPG-----KQTTCPA 246 (295)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C-CEEEEEECSC-----SBEEEEE
T ss_pred EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C-cEeeEecCCC-----CceEEEE
Confidence 8887531 122222222223346789999999988887788899999964 4 3344443221 1367788
Q ss_pred ec-cccccee
Q 002264 685 LK-VSASSAV 693 (945)
Q Consensus 685 ~s-~~g~~l~ 693 (945)
|- +|.+.|+
T Consensus 247 FGG~d~~~Ly 256 (295)
T d2ghsa1 247 FIGPDASRLL 256 (295)
T ss_dssp EESTTSCEEE
T ss_pred EeCCCCCEEE
Confidence 85 6665554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.06 E-value=0.001 Score=67.01 Aligned_cols=102 Identities=18% Similarity=0.122 Sum_probs=74.8
Q ss_pred EEEEcC---CCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEc--CCCCEEEEEECCC----------
Q 002264 543 TMLYSA---DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD--TTQNHFLAVGEDS---------- 607 (945)
Q Consensus 543 ~~~~s~---~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg---------- 607 (945)
.+++.. ||+++++... .+.+|-+.|+.+.+..+.........+..+... |+..++++++.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l 165 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM 165 (459)
T ss_dssp EEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred cccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence 445544 8999998763 588999999999998776655444456666654 4556777776532
Q ss_pred --------cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC
Q 002264 608 --------QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (945)
Q Consensus 608 --------~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d 650 (945)
.+.++|..+.+....+...+ ....++++++|+++++.+.+
T Consensus 166 ~d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 166 EDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp TCGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred cchhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 26788999998888877654 46789999999999988754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.99 E-value=0.0087 Score=57.80 Aligned_cols=255 Identities=12% Similarity=0.041 Sum_probs=154.3
Q ss_pred CCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEE
Q 002264 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYS 434 (945)
Q Consensus 356 g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~-~dg~i~vwd 434 (945)
|.+||++. .+.|+-.+++........ ....+..+...+..++|.+..+.|.-.. .++.|+..+
T Consensus 1 ~~fLl~s~--~~~I~~~~ld~~~~~~~~--------------~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~ 64 (263)
T d1npea_ 1 GTHLLFAQ--TGKIERLPLERNTMKKTE--------------AKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS 64 (263)
T ss_dssp CEEEEEEE--EEEEEEEEESSSCBCGGG--------------CEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEeC--CCeEEEEECCCccccccc--------------cccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 34555544 367777777554322110 1112334455688899999888777664 457788888
Q ss_pred ccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEec-CCCCCEEEEEeeecCCccEEEE
Q 002264 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFS 513 (945)
Q Consensus 435 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s 513 (945)
++++.... .+......+.++++..-+.. +.++-...+.|.+.+.++.....+. ..-.....+++.|.. |.++.+
T Consensus 65 l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t 139 (263)
T d1npea_ 65 LHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWT 139 (263)
T ss_dssp SSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT-TEEEEE
T ss_pred cccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEeccc-CcEEEe
Confidence 87654332 22233356889999876764 3445566789999996555433333 334568899988753 344444
Q ss_pred EEcCCe--EEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEE
Q 002264 514 TAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (945)
Q Consensus 514 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 591 (945)
-...+. |..-+++...........-.....+++.+.++.|+.+.. +.+.|...|+........+.+.. ....+
T Consensus 140 ~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~---~~~~I~~~~~~g~~~~~v~~~~~--~P~~l 214 (263)
T d1npea_ 140 DWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQPGRRKVLEGLQ--YPFAV 214 (263)
T ss_dssp ECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTEEEEEEEEECCC--SEEEE
T ss_pred ecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC---CCCEEEEEECCCCCeEEEECCCC--CcEEE
Confidence 332233 444455544433333333346789999998888877643 47789999987655544444433 23456
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcC
Q 002264 592 QFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (945)
Q Consensus 592 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (945)
++. +..|+... ..+.|...|..+++.+..+..... .....+++.+
T Consensus 215 av~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v~~ 260 (263)
T d1npea_ 215 TSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIAL 260 (263)
T ss_dssp EEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEEC
T ss_pred EEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEEeC
Confidence 665 45666555 678899999999988776643332 2445666554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.87 E-value=0.012 Score=55.78 Aligned_cols=253 Identities=11% Similarity=0.120 Sum_probs=149.3
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCC
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 642 (945)
...+.+.|+..+.....-.- ...+.-.+|..+.++.-+ ...+.+||+++.+.++...... +|.--.|-.+ +
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~-~ 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESSS-S
T ss_pred CceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecCC-C
Confidence 56789999987653322221 122355789888888876 5589999999999999888764 5666666544 5
Q ss_pred EEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeecccccceeccCCCCCccccccCCCCCCCcccCCCCCc
Q 002264 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (945)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (945)
.|+..+. ..|+-|+++......+.+..+..-
T Consensus 115 ~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L------------------------------------------------ 145 (327)
T d1utca2 115 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 145 (327)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred EEEEEcC-CceEEEcccCCCCchhhhhhcccc------------------------------------------------
Confidence 6666554 489999986543333333332211
Q ss_pred cCCCCCccccCCCCCCcccccceeecCCcceeeecCCCCCCccceEEEEEecCCCeEEEeee-------cCeEEEEeecC
Q 002264 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWHR 795 (945)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-------dg~i~lw~~~~ 795 (945)
....|.....++++++++..|- .|.+.+|.++.
T Consensus 146 ----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er 185 (327)
T d1utca2 146 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 185 (327)
T ss_dssp ----------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred ----------------------------------------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence 1123333444444444433321 26777776554
Q ss_pred CCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCC---CceEEec---C-CCeEEEEeccCce---E-
Q 002264 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN---DSYVMSA---T-GGKISLFNMMTFK---V- 864 (945)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~d---g~~la~~---s-d~~i~iwd~~~~~---~- 864 (945)
... ..+.| |......+.+.-+ .+.++.+ . .++++|.++.... .
T Consensus 186 ~~s------------------------Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~ 239 (327)
T d1utca2 186 KVS------------------------QPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 239 (327)
T ss_dssp TEE------------------------EEECC--SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCC
T ss_pred CcC------------------------ccccc--eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCC
Confidence 221 11222 3222222222111 1122222 1 3678888876421 1
Q ss_pred ----EEEec----CCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcceeEEEecCCcceeeeecCC
Q 002264 865 ----MTTFM----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (945)
Q Consensus 865 ----~~~~~----~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 936 (945)
...+. ...+-..++..|+ .-.++..-+.-|.|++||+++|.++..-+--.+.|..-+-..+..=++....+
T Consensus 240 f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~ 318 (327)
T d1utca2 240 FPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK 318 (327)
T ss_dssp CCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred CcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCC
Confidence 11111 1234477889998 77799999999999999999999988776666777755555555556666777
Q ss_pred ceEE
Q 002264 937 AQVT 940 (945)
Q Consensus 937 g~i~ 940 (945)
|.|.
T Consensus 319 GqVl 322 (327)
T d1utca2 319 GQVL 322 (327)
T ss_dssp SEEE
T ss_pred CeEE
Confidence 7764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.81 E-value=0.0037 Score=68.46 Aligned_cols=194 Identities=11% Similarity=0.077 Sum_probs=110.5
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCC----------CCE-EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHE----------APV-YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~----------~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 534 (945)
.++.++.++.|.-+| .+|+.+-++.... ..+ ..+.+. + ..++.++.|+.+...|..+++.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~---~-~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---K-GKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---T-TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE---C-CcEEEEecccceeeeccccccceecc
Confidence 455667788888999 8899887764211 011 111221 2 35778888999998999998887655
Q ss_pred cCCCCeE--EEEEEcC--CCCEEEEEee--cCCCCceEEEEeCCCCceeeEeccccC-----------------------
Q 002264 535 DAPGHWC--TTMLYSA--DGSRLFSCGT--SKDGDSFLVEWNESEGTIKRTYAGFRK----------------------- 585 (945)
Q Consensus 535 ~~~~~~i--~~~~~s~--~~~~l~~~~~--~~d~~~~i~iwd~~~~~~~~~~~~~~~----------------------- 585 (945)
....... ..+.-.| -+..+++++. .....+.|+-+|..+|+.+-.+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 4321110 0000011 1234444432 122356899999999998876532210
Q ss_pred -------cce-EEEEEcCCCCEEEEEEC-------------------CCcEEEEECCCCeeEEEeecCCCC-------CC
Q 002264 586 -------KSN-GVVQFDTTQNHFLAVGE-------------------DSQIKFWDMDNVNILTSTDAEGGL-------PN 631 (945)
Q Consensus 586 -------~~~-~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~ 631 (945)
..+ ...++.+....++.+.. ...|.-.|.++++.....+...+. .+
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 011 12566676666665331 124667788888887766543321 11
Q ss_pred ccEEEEcCCC---CEEEEEECCCcEEEEECCCCccc
Q 002264 632 LPRLRFSKEG---NLLAVTTADNGFKILANAIGLRS 664 (945)
Q Consensus 632 v~~v~~sp~g---~~l~~~~~dg~i~iw~~~~~~~~ 664 (945)
........++ ..++.++.+|.+.++|..+++..
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~ 350 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eeecceecCCCceeeeeeccccceeEEecccccccc
Confidence 1112222233 35677788999999999999543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.80 E-value=0.017 Score=62.81 Aligned_cols=192 Identities=13% Similarity=0.033 Sum_probs=112.1
Q ss_pred EEEEEeCCCcEEEEe-C-CCceEEEecCCCC----CE-------EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEE
Q 002264 467 CVVTCGDDKLIKVWE-L-SGRKLFNFEGHEA----PV-------YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~-~~~~~~~~~~~~~----~v-------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 533 (945)
++++.+.++.|...| . +|+.+-++..... .. ..+++. + ..++.++.|+.+...|.++++....
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~---~-~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---A-GQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---T-TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee---C-CeEEEEeCCCcEEeeehhhhhhhcc
Confidence 333333467777777 4 5888877642110 00 122322 2 4677889999999999999988776
Q ss_pred ecCCCC----eEEEEEEcCCCCEEEEEeec--CCCCceEEEEeCCCCceeeEeccccC----------------------
Q 002264 534 YDAPGH----WCTTMLYSADGSRLFSCGTS--KDGDSFLVEWNESEGTIKRTYAGFRK---------------------- 585 (945)
Q Consensus 534 ~~~~~~----~i~~~~~s~~~~~l~~~~~~--~d~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 585 (945)
...... .+++.-.-.++. ++.+... ....+.|+-+|+.+|+.+-.+.....
T Consensus 141 ~~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred ccccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence 543211 111111112333 3333321 11367899999999998876542210
Q ss_pred --------------cce-EEEEEcCCCCEEEEEEC----------------CCcEEEEECCCCeeEEEeecCCCC-----
Q 002264 586 --------------KSN-GVVQFDTTQNHFLAVGE----------------DSQIKFWDMDNVNILTSTDAEGGL----- 629 (945)
Q Consensus 586 --------------~~~-~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~----- 629 (945)
..+ ...++++....++.+.. ...+...|.++|+.+..++...+.
T Consensus 220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D 299 (571)
T d2ad6a1 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccc
Confidence 011 22466777777776553 345778899999998887754331
Q ss_pred --CCccEEEEcCCCC---EEEEEECCCcEEEEECCCCcc
Q 002264 630 --PNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 630 --~~v~~v~~sp~g~---~l~~~~~dg~i~iw~~~~~~~ 663 (945)
..........+|+ .++.++.+|.+.++|..+++.
T Consensus 300 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~ 338 (571)
T d2ad6a1 300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cccccceeeeeccCccccceeeccccceEEEEecCCCcE
Confidence 1111122223443 467788899999999999943
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.76 E-value=0.0056 Score=66.72 Aligned_cols=191 Identities=12% Similarity=0.088 Sum_probs=112.5
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEecCCCC----------CE-EEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEe
Q 002264 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA----------PV-YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd-~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 534 (945)
.++.++.++.|.-.| .+|+.+-++..... .+ ..++. .+..++.++.|+.+...|..+++.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce----eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 345566678888889 88988877642110 00 11111 1246888899999999999998888766
Q ss_pred cCCCC-eEEEEEEcC--CCCEEEEEee--cCCCCceEEEEeCCCCceeeEecccc-------------------------
Q 002264 535 DAPGH-WCTTMLYSA--DGSRLFSCGT--SKDGDSFLVEWNESEGTIKRTYAGFR------------------------- 584 (945)
Q Consensus 535 ~~~~~-~i~~~~~s~--~~~~l~~~~~--~~d~~~~i~iwd~~~~~~~~~~~~~~------------------------- 584 (945)
..... ....+.-.| .+..++.+.. .....+.|.-+|.++|+.+-.+....
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 54321 000011111 1223333322 11124679999999999887764211
Q ss_pred ----Cc-ceEEEEEcCCCCEEEEEEC-------------------CCcEEEEECCCCeeEEEeecCCCCCCcc-------
Q 002264 585 ----KK-SNGVVQFDTTQNHFLAVGE-------------------DSQIKFWDMDNVNILTSTDAEGGLPNLP------- 633 (945)
Q Consensus 585 ----~~-~~~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~------- 633 (945)
.. .-...++.+..+.++.+.. ...|.-.|.++++....++...+ .+.
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~--D~wd~d~~~~ 301 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPG--DSWDFTATQQ 301 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT--CCSCCCCCSC
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccc--ccccccccce
Confidence 00 1122567777777766431 23477789999998877765443 121
Q ss_pred --EEEEcCCC---CEEEEEECCCcEEEEECCCCcc
Q 002264 634 --RLRFSKEG---NLLAVTTADNGFKILANAIGLR 663 (945)
Q Consensus 634 --~v~~sp~g---~~l~~~~~dg~i~iw~~~~~~~ 663 (945)
-+....+| ..++.++.+|.+.++|..+++.
T Consensus 302 ~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~ 336 (560)
T d1kv9a2 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (560)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred eeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence 12222234 3667788899999999999843
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.032 Score=53.74 Aligned_cols=239 Identities=11% Similarity=0.003 Sum_probs=140.7
Q ss_pred eEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEEcc
Q 002264 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYA 436 (945)
Q Consensus 358 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~-~dg~i~vwd~~ 436 (945)
+||++- ...|+-.++.+.... . +......+..++|.+..+.|.-.. .++.|.-.+++
T Consensus 3 fLl~s~--~~~I~~~~l~~~~~~-------------------~-~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~ 60 (266)
T d1ijqa1 3 YLFFTN--RHEVRKMTLDRSEYT-------------------S-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60 (266)
T ss_dssp EEEEEC--BSSEEEEETTSCCCE-------------------E-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred EEEEEC--CCeEEEEECCCCcce-------------------e-eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEec
Confidence 455553 345888888764422 1 122345678999999888777664 45667766665
Q ss_pred CCcccccce-eeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceE-EEecCCCCCEEEEEeeecCCccEEEEE
Q 002264 437 GSNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSICPHHKENIQFIFST 514 (945)
Q Consensus 437 ~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~ 514 (945)
......... .+......+.++++.+.+.. +.++-...+.|.+.+.+|... ..+.........++++|. .|.++.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~ 138 (266)
T d1ijqa1 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTD 138 (266)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEE
T ss_pred CCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEec
Confidence 432111111 12223345778999887775 444556678899999666543 334444566888998775 33444443
Q ss_pred -EcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccC-cceEEEE
Q 002264 515 -AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQ 592 (945)
Q Consensus 515 -~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~ 592 (945)
+..+.|...+++...........-.....+++.+.++.|+.+.. ..+.|...++.............. .....++
T Consensus 139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~la 215 (266)
T d1ijqa1 139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 215 (266)
T ss_dssp CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEE
T ss_pred cCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCCcccccEEEE
Confidence 23446666666655444443333456789999998888887743 467898888865443333332221 1234566
Q ss_pred EcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeec
Q 002264 593 FDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 593 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 625 (945)
+. +..|+... .++.|+..+..++.....+..
T Consensus 216 v~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 216 VF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 55 34555554 667888888777766655543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.62 E-value=0.073 Score=57.89 Aligned_cols=196 Identities=12% Similarity=0.030 Sum_probs=112.9
Q ss_pred EEEEEeCCCcEEEEe--CCCceEEEecCCCC----------C-EEEEEeeec--CCccEEEEEEcCCeEEEEEccCCCee
Q 002264 467 CVVTCGDDKLIKVWE--LSGRKLFNFEGHEA----------P-VYSICPHHK--ENIQFIFSTAIDGKIKAWLYDTMGSR 531 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd--~~~~~~~~~~~~~~----------~-v~~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~ 531 (945)
++++++.++.+...| .+|+.+-++..... . -..+++.+. ..+.+++.++.|+.|.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 344444456666666 35777766542110 0 123333322 12347888999999999999999888
Q ss_pred EEecCCCCeE-EEEEEcC--CCCEEEEEee--cCCCCceEEEEeCCCCceeeEecccc----------------------
Q 002264 532 VDYDAPGHWC-TTMLYSA--DGSRLFSCGT--SKDGDSFLVEWNESEGTIKRTYAGFR---------------------- 584 (945)
Q Consensus 532 ~~~~~~~~~i-~~~~~s~--~~~~l~~~~~--~~d~~~~i~iwd~~~~~~~~~~~~~~---------------------- 584 (945)
..+....... ..+.-+| .+..++++.. +....+.|+-+|..+|+.+-++....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~ 224 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG 224 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred ccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccc
Confidence 8764321100 0011111 1334444432 11225889999999999887654211
Q ss_pred ---------------CcceEEEEEcCCCCEEEEEECC----------------CcEEEEECCCCeeEEEeecCCCC----
Q 002264 585 ---------------KKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVNILTSTDAEGGL---- 629 (945)
Q Consensus 585 ---------------~~~~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~---- 629 (945)
...-...++++..+.++.+..+ ..|.-.|.++|+.+..++...+.
T Consensus 225 ~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~ 304 (596)
T d1w6sa_ 225 LGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY 304 (596)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCC
Confidence 0011235677777777776432 34778899999998877654331
Q ss_pred ---CCccEEEE-cCCC---CEEEEEECCCcEEEEECCCCc
Q 002264 630 ---PNLPRLRF-SKEG---NLLAVTTADNGFKILANAIGL 662 (945)
Q Consensus 630 ---~~v~~v~~-sp~g---~~l~~~~~dg~i~iw~~~~~~ 662 (945)
....-+.. ..+| +.++....+|.+.++|..+++
T Consensus 305 d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 305 AGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp CCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 11111111 2344 367778889999999999984
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.55 E-value=0.01 Score=61.38 Aligned_cols=280 Identities=7% Similarity=-0.033 Sum_probs=140.7
Q ss_pred cEEEEEEeCCCCeEEEEEeCcC-----------cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (945)
.+...+...+|+ +++.|+.+. .+.+||..+++..... .....|.......++
T Consensus 21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISM 83 (387)
T ss_dssp CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEE
T ss_pred ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC----------------CCCCCcccceeEEEE
Confidence 334444556777 677676421 3778998887643210 011223333345678
Q ss_pred cCCCCEEEEEECC-CcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCC------CcEEEEe-CCCce
Q 002264 415 SPDGNYVGVAFTK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LSGRK 486 (945)
Q Consensus 415 s~~g~~las~~~d-g~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d------~~i~vwd-~~~~~ 486 (945)
.++|++++.|+.+ ..+.+||..+..-.. ...+.... .-..++..+||+ +++.|+.+ ..+.+|| .+++
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~r-~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~- 158 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKT- 158 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTE-
T ss_pred ecCCcEEEeecCCCcceeEecCccCcccc-cccccccc-cccceeeecCCc--eeeeccccccccccceeeeecCCCCc-
Confidence 8999999998765 579999998764322 11222111 223567778888 77777643 3688999 4443
Q ss_pred EEEecCCCCC--------------EEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecC--C------CCeEEEE
Q 002264 487 LFNFEGHEAP--------------VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P------GHWCTTM 544 (945)
Q Consensus 487 ~~~~~~~~~~--------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~------~~~i~~~ 544 (945)
-..+...... -....+. ..+|+.++.++..+.+.+++..+......... . ...-.++
T Consensus 159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (387)
T d1k3ia3 159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 237 (387)
T ss_dssp EEEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eeecCCCcccccccccccceeeccceeEEEE-eCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEE
Confidence 2222110000 0000111 12456666666666666666655432221100 0 0011222
Q ss_pred E-EcCCCCEEEEEeecCCC----CceEEEEeCCCC---ceeeEecc--ccCcceEEEEEcCCCCEEEEEECC--------
Q 002264 545 L-YSADGSRLFSCGTSKDG----DSFLVEWNESEG---TIKRTYAG--FRKKSNGVVQFDTTQNHFLAVGED-------- 606 (945)
Q Consensus 545 ~-~s~~~~~l~~~~~~~d~----~~~i~iwd~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d-------- 606 (945)
. -..+++.++.++..... .....+.+.... ........ .....-......++++.+++|+.+
T Consensus 238 ~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~ 317 (387)
T d1k3ia3 238 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 317 (387)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred EeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCC
Confidence 2 23456666666642111 112333333221 11111111 011122345566888998888843
Q ss_pred ---CcEEEEECCCCeeEEEeecCCCCCCccE-EEEcCCCCEEEEEEC
Q 002264 607 ---SQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGNLLAVTTA 649 (945)
Q Consensus 607 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~sp~g~~l~~~~~ 649 (945)
..+.+||..+.+-...-... ....-.+ ..+.+||++++.|+.
T Consensus 318 ~~~~~ve~Ydp~~~~W~~~~~~~-~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 318 TPVFTPEIYVPEQDTFYKQNPNS-IVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCS-SCCCTTEEEEECTTSCEEEEECC
T ss_pred cEeceEEEEECCCCeEEECCCCC-CcccceEEEEECCCCEEEEEeCC
Confidence 14788998877543321111 1111123 446789999999884
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.54 E-value=0.042 Score=52.74 Aligned_cols=234 Identities=12% Similarity=-0.003 Sum_probs=143.8
Q ss_pred CEEEEEECCCcEEEEEccCCccc--ccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEe-cCCCC
Q 002264 419 NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEA 495 (945)
Q Consensus 419 ~~las~~~dg~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~~~ 495 (945)
.+|+.+.. +.|+-.+++..... .....+..+...+.+++|.+..+. ++.+-..++.|+..+..|.....+ .....
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 34544433 46777777654322 111123445556888999988875 445556677888888554443333 33335
Q ss_pred CEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCc
Q 002264 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (945)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~ 575 (945)
.+.++++.+.. +.+.++-...+.|.+.+++.................+++.|...+++..... .+...|..-++....
T Consensus 80 ~p~~iAvD~~~-~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~-~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSCC
T ss_pred cccEEEEeccC-CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecC-CCCcEEEEecCCCCC
Confidence 68889987643 3444565667899999988766544444444568899999988888765431 113345555655433
Q ss_pred eeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEE-CCCcE
Q 002264 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGF 653 (945)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~-~dg~i 653 (945)
...... ..-.....+++++.++.|+.+. ..+.|...+++.......+.... ...++++. +..|.... ..+.|
T Consensus 158 ~~~i~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~--~~~lYwtd~~~~~I 231 (263)
T d1npea_ 158 RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTNSV 231 (263)
T ss_dssp CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTTEE
T ss_pred ceeeee-ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE--CCEEEEEECCCCEE
Confidence 322222 2222467899998888887765 67889999997665544444322 23577775 44555444 56788
Q ss_pred EEEECCCCc
Q 002264 654 KILANAIGL 662 (945)
Q Consensus 654 ~iw~~~~~~ 662 (945)
...|..++.
T Consensus 232 ~~~~~~~g~ 240 (263)
T d1npea_ 232 IAMDLAISK 240 (263)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCc
Confidence 888888773
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.53 E-value=0.1 Score=56.76 Aligned_cols=79 Identities=11% Similarity=0.076 Sum_probs=53.8
Q ss_pred CCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecCCCcc-eeEEEecCCcc-
Q 002264 851 GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLN- 928 (945)
Q Consensus 851 d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~- 928 (945)
.|.|.-+|+.+++.+.....+. ++..-..+. .+.++++|+.||.++-+|.++|+.+-+++-.... -.-+.|..||+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCeEEEEcCCCCcEEeecCCCC-CCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 3678889999999888776432 222222334 5568888999999999999999999887643221 11256677885
Q ss_pred eee
Q 002264 929 ILV 931 (945)
Q Consensus 929 ~l~ 931 (945)
|++
T Consensus 543 Yv~ 545 (582)
T d1flga_ 543 YLG 545 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.047 Score=52.56 Aligned_cols=231 Identities=9% Similarity=-0.020 Sum_probs=140.8
Q ss_pred EEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCc-----eEEEecCCC
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~-----~~~~~~~~~ 494 (945)
+|+.+.. ..|+..++++..... +......+.+++|.+..+. ++.+-..++.|.-.+..+. ....+....
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~----~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCCccee----eeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 3444433 358888988754322 2234556789999998885 3344445666665553321 122233333
Q ss_pred CCEEEEEeeecCCccEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
..+.++++.+.. +.+.++-...+.|.+.+++.................+++.|...+++.... ...+.|...++...
T Consensus 77 ~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~--~~~~~I~r~~~dGs 153 (266)
T d1ijqa1 77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 153 (266)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceEEEeecc-ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc--CCCcceeEeccCCC
Confidence 456778887653 355556567788999998877665555555567889999997777766542 12456777777544
Q ss_pred ceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEE-ECCCc
Q 002264 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNG 652 (945)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~-~~dg~ 652 (945)
....... ..-.....+++++.++.|+.+. ..+.|...++...................++++. +..|... ..++.
T Consensus 154 ~~~~l~~-~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~ 230 (266)
T d1ijqa1 154 DIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 230 (266)
T ss_dssp CEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceecccc-cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCe
Confidence 4333332 2222467899999888777765 5688999998766554444433322234566665 3455544 45678
Q ss_pred EEEEECCCCc
Q 002264 653 FKILANAIGL 662 (945)
Q Consensus 653 i~iw~~~~~~ 662 (945)
|...+..++.
T Consensus 231 I~~~~~~~g~ 240 (266)
T d1ijqa1 231 IFSANRLTGS 240 (266)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 8888877763
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.45 E-value=0.031 Score=60.66 Aligned_cols=257 Identities=12% Similarity=0.032 Sum_probs=140.9
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeecccc-ccEEEEEEecCCCeeEEEEEe------CCCcEEEEe-CCCceEEE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd-~~~~~~~~ 489 (945)
+..|+.++.||.+.-.|.++|+.+-.......+. ..++.--.-.++. ++.+. .+|.|+-+| .+|+.+.+
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 191 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT---VLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCe---EEEeeccccccccCcEEEEECCCCcEEEE
Confidence 4467778889999999999997654322111111 1122111222343 33333 367899999 99999876
Q ss_pred ecCCC-------------------------------------CCE-EEEEeeecCCccEEEEEEc---------------
Q 002264 490 FEGHE-------------------------------------APV-YSICPHHKENIQFIFSTAI--------------- 516 (945)
Q Consensus 490 ~~~~~-------------------------------------~~v-~~~~~~~~~~~~~l~s~~~--------------- 516 (945)
+.... ..+ ...++.+ ...+++.+..
T Consensus 192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~--~~g~~y~~tg~~~p~~~~~r~g~n~ 269 (571)
T d2ad6a1 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP--KLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch--hcCeeeeecccccCccccccccccc
Confidence 54221 111 1122223 2334444433
Q ss_pred -CCeEEEEEccCCCeeEEecCCCC---------eEEEEEEcCCCCE---EEEEeecCCCCceEEEEeCCCCceeeEeccc
Q 002264 517 -DGKIKAWLYDTMGSRVDYDAPGH---------WCTTMLYSADGSR---LFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (945)
Q Consensus 517 -dg~i~iwd~~~~~~~~~~~~~~~---------~i~~~~~s~~~~~---l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~ 583 (945)
...+...|.++++....+....+ .........+++. ++..+ +++.++++|..+|+++......
T Consensus 270 ~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~----k~G~l~vlDr~tG~~i~~~~~~ 345 (571)
T d2ad6a1 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID----RNGILYTLNRENGNLIVAEKVD 345 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC----TTSEEEEEETTTCCEEEEEESS
T ss_pred cccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeecc----ccceEEEEecCCCcEeeeeccC
Confidence 24567778888888776654322 1112222234432 22332 5899999999999876432111
Q ss_pred c-------------------------------------C-cceEEEEEcCCCCEEEEEECC-------------------
Q 002264 584 R-------------------------------------K-KSNGVVQFDTTQNHFLAVGED------------------- 606 (945)
Q Consensus 584 ~-------------------------------------~-~~~~~~~~~~~~~~l~~~~~d------------------- 606 (945)
. . ..-...+++|+...+++...+
T Consensus 346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~ 425 (571)
T d2ad6a1 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccc
Confidence 0 0 000125677776666654322
Q ss_pred ------------------CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccc
Q 002264 607 ------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (945)
Q Consensus 607 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (945)
|.|.-+|+.+|+.+........ ..+-..+..+.++++|+.||.++.+|.++|+.+-+.-
T Consensus 426 ~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~---~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCC---CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 4577888888888877654322 1211222346688889999999999999995543322
Q ss_pred cCCccccccCcceeeeecccccc
Q 002264 669 ENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 669 ~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
.+... . -..+.+..||+.
T Consensus 503 l~~~~--~---a~P~ty~~dGkq 520 (571)
T d2ad6a1 503 MPSGG--I---GSPMTYSFKGKQ 520 (571)
T ss_dssp CSSCC--C---SCCEEEEETTEE
T ss_pred CCCCc--e---ecceEEEECCEE
Confidence 11111 1 122556678865
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.42 E-value=0.038 Score=56.80 Aligned_cols=120 Identities=10% Similarity=0.155 Sum_probs=75.9
Q ss_pred EEEEEEcCCCCEEEEEeecCCC-------CceEEEEeCCCCceeeE--eccccCcceEEEEEcCCCCEEEEEECC-CcEE
Q 002264 541 CTTMLYSADGSRLFSCGTSKDG-------DSFLVEWNESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGED-SQIK 610 (945)
Q Consensus 541 i~~~~~s~~~~~l~~~~~~~d~-------~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~ 610 (945)
+.......+|+.++.++...+. ...+.+||..+++.... ............++.+++..++.|+.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 3444455677877777742211 11367899998764332 222222123446788999988888744 6899
Q ss_pred EEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECC------CcEEEEECCCC
Q 002264 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD------NGFKILANAIG 661 (945)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~d------g~i~iw~~~~~ 661 (945)
+||..+..-...-.... ...-..++..+||++++.|+.+ ..+.+||..+.
T Consensus 102 ~yd~~~~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp EEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred EecCccCcccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 99998877654322222 1234567888899999998753 35889998776
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.42 E-value=0.067 Score=55.82 Aligned_cols=248 Identities=10% Similarity=0.054 Sum_probs=133.3
Q ss_pred cEEEEEEeCCCCeEEEEEeCcC----cEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~l 421 (945)
.+..+++||||++++++-+.+| .|++.|+.+++.+.. .+. ......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~------------------~i~--~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc------------------ccc--cccccceEEcCCCCEE
Confidence 4556788999997665544444 799999999986531 011 1122468999999988
Q ss_pred EEEECC----------------CcEEEEEccCCcccccceeecc--ccccEEEEEEecCCCeeEEEEEe-CCCcEEEE--
Q 002264 422 GVAFTK----------------HLIQLYSYAGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW-- 480 (945)
Q Consensus 422 as~~~d----------------g~i~vwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~~~l~s~s-~d~~i~vw-- 480 (945)
+....+ ..|..|.+.++..-. ...+.. ....+..+..+++++.+++.+.+ .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 247777776653221 112222 23356778889999953222332 23344444
Q ss_pred e-CCCc--------eEEEecCCCCCEEEEEeeecCCccEEEEEE---cCCeEEEEEccCCCee--EEe-cCCCCeEEEEE
Q 002264 481 E-LSGR--------KLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSR--VDY-DAPGHWCTTML 545 (945)
Q Consensus 481 d-~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~--~~~-~~~~~~i~~~~ 545 (945)
| .... ....+.........+.. . ++.+++... .++.|...++...... ..+ ..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec--C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 4 2111 12222323333333221 1 223333332 2456766776654321 222 22333344334
Q ss_pred EcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCee
Q 002264 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (945)
Q Consensus 546 ~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (945)
+...+.+|+.... .++...|++++..++.....+..... .+..+...++...+...- .=.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~-sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCCc-eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 4444556665543 23567899999988877655443332 455455455555444432 236788899988754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.42 E-value=0.056 Score=51.14 Aligned_cols=231 Identities=13% Similarity=0.147 Sum_probs=142.9
Q ss_pred EEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEECCC
Q 002264 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (945)
Q Consensus 349 ~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~~dg 428 (945)
+.-.+|..+ +||.-+ ..++.|+|+++.+.+.... ....|.--.|-.+ +.|+..+ +.
T Consensus 67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~-~~L~lVT-~t 122 (327)
T d1utca2 67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DN 122 (327)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEESSS-SEEEEEC-SS
T ss_pred hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--------------------cCCCcEEEEecCC-CEEEEEc-CC
Confidence 445678877 677655 5689999999987764311 2346666677644 4555554 45
Q ss_pred cEEEEEccCCcccccceeecccc----ccEEEEEEecCCCeeEEEEE--eC----CCcEEEEeCCCceEEEecCCCCCEE
Q 002264 429 LIQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTC--GD----DKLIKVWELSGRKLFNFEGHEAPVY 498 (945)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h~----~~v~~l~~s~~~~~~~l~s~--s~----d~~i~vwd~~~~~~~~~~~~~~~v~ 498 (945)
.|+-|++++.... .+.+..|. ..|..-..+++.+. ++++| .. .|.+.+|..+.+.-+.+.||.+.-.
T Consensus 123 aVYHW~~~g~s~P--~k~fdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~ 199 (327)
T d1utca2 123 AVYHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 199 (327)
T ss_dssp EEEEEESSSSCCC--EEEEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE
T ss_pred ceEEEcccCCCCc--hhhhhhcccccCceEEEEEECCCCCE-EEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeE
Confidence 6999999754432 22344443 46777888888885 33333 12 3567899977777788888877666
Q ss_pred EEEeeecCCc-cEEEEEE---cCCeEEEEEccCCC---ee-----EEecC----CCCeEEEEEEcCCCCEEEEEeecCCC
Q 002264 499 SICPHHKENI-QFIFSTA---IDGKIKAWLYDTMG---SR-----VDYDA----PGHWCTTMLYSADGSRLFSCGTSKDG 562 (945)
Q Consensus 499 ~~~~~~~~~~-~~l~s~~---~dg~i~iwd~~~~~---~~-----~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~d~ 562 (945)
.+.+...... .+++.+. ..+.+++-++.... .. ..+.. ..+-..++..++.-..++..+.
T Consensus 200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK---- 275 (327)
T d1utca2 200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 275 (327)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----
Confidence 6544322211 2333322 23678888876532 11 11111 2334567888888787877774
Q ss_pred CceEEEEeCCCCceeeEeccccCcceEEEEEcCCCCEEEEEECCCcEEE
Q 002264 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (945)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 611 (945)
-|.+++||+.++.++..-+-..+ .+...+-..+..-+++...+|.|.-
T Consensus 276 ~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 276 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred CcEEEEEEcccccEEEEeecCCC-ceEEeccCCCCceEEEECCCCeEEE
Confidence 89999999999998876554444 4554445555556666666666543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.41 E-value=0.0092 Score=59.94 Aligned_cols=197 Identities=11% Similarity=0.072 Sum_probs=120.8
Q ss_pred EEEEec---CCCeeEEEEEeCCCcEEEEe-CCCceEEEecC-CCCCEEEEEeeecCCccEEEEEEcCC------------
Q 002264 456 DLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDG------------ 518 (945)
Q Consensus 456 ~l~~s~---~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg------------ 518 (945)
.+.+.. ||++ +|+.-..+..|.+-| ...++.....- ....+..+.....++..+++.++.+.
T Consensus 89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 455544 7875 566777788999999 55555443322 34456666665556667888777633
Q ss_pred ------eEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCC-----------C------------------
Q 002264 519 ------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG-----------D------------------ 563 (945)
Q Consensus 519 ------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~-----------~------------------ 563 (945)
.+.++|..+.+......... ....+.++++|+++++.+.+... .
T Consensus 168 ~~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 168 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp GG-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred hhhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 35677888777666555443 35578899999999987642110 0
Q ss_pred -----ceEEEEeCCCC---ceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe------------eEEE
Q 002264 564 -----SFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN------------ILTS 622 (945)
Q Consensus 564 -----~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~ 622 (945)
+.+.+.|.+.. ..++.+.... ....+.++|||+++++++ .+.++.++|++.-. ....
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIPVpK--sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e 324 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 324 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred CcEEeCCceeecccccCCcceeEEEecCC--CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence 11233343321 1122222221 245588999999999887 68999999986321 1111
Q ss_pred eecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECC
Q 002264 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (945)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~ 659 (945)
... +. .-...+|+.+|.-..+.--|..|.-|++.
T Consensus 325 ~el--gl-gPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 325 PEL--GL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CBC--CS-CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred ccc--Cc-CccccccCCCceEEEEeeccceEEEEecc
Confidence 111 11 23567888888655555579999999985
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.21 E-value=0.074 Score=57.47 Aligned_cols=281 Identities=13% Similarity=0.104 Sum_probs=151.5
Q ss_pred EEEEeCcCcEEEEEcCCCCcccccccccccccccCccc--ccccccCCCccEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q 002264 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF--QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (945)
Q Consensus 360 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~i~~s~~g~~las~~~dg~i~vwd~~~ 437 (945)
|..++.++.|.-.|..+|+.+ |......... ........... ++. .+..++.+..|+.+.-.|..+
T Consensus 69 vyv~t~~~~v~AlDa~tG~~l-------W~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~v~~~~~~g~l~Alda~t 136 (560)
T d1kv9a2 69 IYTSMSWSRVIAVDAASGKEL-------WRYDPEVAKVKARTSCCDAVNRG---VAL--WGDKVYVGTLDGRLIALDAKT 136 (560)
T ss_dssp EEEEEGGGEEEEEETTTCCEE-------EEECCCCCGGGGGGCTTCSCCCC---CEE--EBTEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCeEEEEeCCCCCEE-------EEECCCCCccccccccccccccC---cce--eCCeEEEEeCCCEEEEEECCC
Confidence 566677888888899988766 3321100000 00001111111 111 145677778888888888888
Q ss_pred Ccccccceeeccccc--cEEEEEEecCCCeeEEEEEe------CCCcEEEEe-CCCceEEEecCC---------------
Q 002264 438 SNDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGH--------------- 493 (945)
Q Consensus 438 ~~~~~~~~~~~~h~~--~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd-~~~~~~~~~~~~--------------- 493 (945)
|+.+-.... ..+.. .++.--.-.++. ++.++ ..|.|.-+| .+|+.+.++..-
T Consensus 137 G~~~w~~~~-~~~~~~~~~~~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~ 212 (560)
T d1kv9a2 137 GKAIWSQQT-TDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELRE 212 (560)
T ss_dssp CCEEEEEEC-SCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred CcEEeccCc-cCcccceeeeeeeeeecCc---ccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccc
Confidence 876543221 11111 111111111232 33332 236799999 999998776421
Q ss_pred ---------------CCCEE-EEEeeecCCccEEEEEEc-------------------CCeEEEEEccCCCeeEEecCCC
Q 002264 494 ---------------EAPVY-SICPHHKENIQFIFSTAI-------------------DGKIKAWLYDTMGSRVDYDAPG 538 (945)
Q Consensus 494 ---------------~~~v~-~~~~~~~~~~~~l~s~~~-------------------dg~i~iwd~~~~~~~~~~~~~~ 538 (945)
...+. .+++.+ ...+++.+.. ...|...|+++++....+....
T Consensus 213 ~~~~~~~~~~~~~~~G~~~W~~~s~D~--~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~ 290 (560)
T d1kv9a2 213 AAKTWQGDQYWKLGGGGTVWDSMAYDP--ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP 290 (560)
T ss_dssp HHTTCCSSCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred ccccccccccccccCCCCccccccccc--ccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccc
Confidence 01111 122222 2233433221 2356667888888776554322
Q ss_pred C---------eEEEEEEcCCCC--EEEEEeecCCCCceEEEEeCCCCceeeEeccccC----------------------
Q 002264 539 H---------WCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---------------------- 585 (945)
Q Consensus 539 ~---------~i~~~~~s~~~~--~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 585 (945)
+ ...-+.+..+++ .++... .+++.++++|..+++++........
T Consensus 291 ~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~---~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 367 (560)
T d1kv9a2 291 GDSWDFTATQQITLAELNIDGKPRKVLMQA---PKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (560)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEEC---CTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred cccccccccceeeeeeeecCCceeeeeeec---CccceEEEEecCCCcccccccccccccccccChhhcccccccccccc
Confidence 2 111122222333 233322 2588999999999987754322110
Q ss_pred -------------cceEEEEEcCCCCEEEEEEC------------------------------------CCcEEEEECCC
Q 002264 586 -------------KSNGVVQFDTTQNHFLAVGE------------------------------------DSQIKFWDMDN 616 (945)
Q Consensus 586 -------------~~~~~~~~~~~~~~l~~~~~------------------------------------dg~i~iwd~~~ 616 (945)
..-...+++|+...++.... .|.|.-||+.+
T Consensus 368 ~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~t 447 (560)
T d1kv9a2 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (560)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred ccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCC
Confidence 00113467777766665432 24688899999
Q ss_pred CeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccc
Q 002264 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (945)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~ 664 (945)
++.+........ ..+-.+.-.|.+++.|+.||.++.+|..+|+.+
T Consensus 448 Gk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 448 QKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp TEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence 999888766542 222233445678888999999999999999544
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.18 E-value=0.037 Score=57.84 Aligned_cols=248 Identities=10% Similarity=0.023 Sum_probs=126.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEE-CCC----cEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeC-----
Q 002264 404 DVPISVSRVAWSPDGNYVGVAF-TKH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----- 473 (945)
Q Consensus 404 ~h~~~V~~i~~s~~g~~las~~-~dg----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~----- 473 (945)
++.-.+..+++|||++++|.+- .+| .+++.|+.+|+.+.. .+. ......++|++|++. ++.+.-.
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~-~~Y~~~~~~~~~ 196 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG-MFYNAYPQQDGK 196 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE-EEEEECCCCSSC
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCE-EEEEEeccccCc
Confidence 3444556678999999998652 233 599999999976542 121 112356899999994 3333211
Q ss_pred ----------CCcEEEEe-CCC--ceEEEecCCCC--CEEEEEeeecCCccEEEEEEc---CCeEEEE--EccCCCe---
Q 002264 474 ----------DKLIKVWE-LSG--RKLFNFEGHEA--PVYSICPHHKENIQFIFSTAI---DGKIKAW--LYDTMGS--- 530 (945)
Q Consensus 474 ----------d~~i~vwd-~~~--~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~---dg~i~iw--d~~~~~~--- 530 (945)
...|..|. -+. .....+..... .+..+.. +.++++++.... +....+| |+.....
T Consensus 197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~ 274 (430)
T d1qfma1 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (430)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence 12456665 222 22333443333 3444444 446677654332 3334444 4332211
Q ss_pred -----eEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCcee--eEeccccCcceEEEEEcCCCCEEEEE
Q 002264 531 -----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAV 603 (945)
Q Consensus 531 -----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (945)
.............+. .+|..++..+.....++.|...++...... ..+-.+....+..-.+...+.+|+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~ 352 (430)
T d1qfma1 275 GILKWVKLIDNFEGEYDYVT--NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (430)
T ss_dssp SSCCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred cccceeEeecccccceEEEe--cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE
Confidence 111111122222222 234444444433334567777777654321 22322222233333344445566655
Q ss_pred E-CCC--cEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEEC----CCcEEEEECCCCc
Q 002264 604 G-EDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (945)
Q Consensus 604 ~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~----dg~i~iw~~~~~~ 662 (945)
. .++ .|+++++.++.......... ..|..+...++...+..... -.++.-+|+.++.
T Consensus 353 ~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 353 YLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 4 443 58889998887765543332 24555555555554443322 2678888888773
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.13 E-value=0.071 Score=58.00 Aligned_cols=257 Identities=11% Similarity=0.061 Sum_probs=141.0
Q ss_pred CCEEEEEECCCcEEEEEccCCcccccceeeccccc-cEEEEEEecCCCeeEEEEEe------CCCcEEEEe-CCCceEEE
Q 002264 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG-AVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFN 489 (945)
Q Consensus 418 g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~~~l~s~s------~d~~i~vwd-~~~~~~~~ 489 (945)
+.+++.++.|+.|.-.|.++|+.+.....-..+.. .++.--.--++ .++.++ ..|.|+-+| .+|+.+.+
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~---~vivg~~~~e~~~~G~v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD---KVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT---EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECC---eEEEeeccccccccCceEEEECCCCcEEEE
Confidence 44688888999999999999987653321111111 11111111133 344443 248899999 99999877
Q ss_pred ecCCC-------------------------------------CCE-EEEEeeecCCccEEEEEEc---------------
Q 002264 490 FEGHE-------------------------------------APV-YSICPHHKENIQFIFSTAI--------------- 516 (945)
Q Consensus 490 ~~~~~-------------------------------------~~v-~~~~~~~~~~~~~l~s~~~--------------- 516 (945)
+.... ..+ ..+++.+ ...+++.+..
T Consensus 198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~--~~~lvy~~tg~~~p~~~~~r~g~n~ 275 (596)
T d1w6sa_ 198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP--GTNLIYFGTGNPAPWNETMRPGDNK 275 (596)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred eeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc--CCCeeeccccccccccccccccccc
Confidence 64211 001 1222323 2234444432
Q ss_pred -CCeEEEEEccCCCeeEEecCCCC---------eEEEEE-EcCCCC---EEEEEeecCCCCceEEEEeCCCCceeeEecc
Q 002264 517 -DGKIKAWLYDTMGSRVDYDAPGH---------WCTTML-YSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (945)
Q Consensus 517 -dg~i~iwd~~~~~~~~~~~~~~~---------~i~~~~-~s~~~~---~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~~ 582 (945)
...|...|+++++....+....+ ....+. ...+|+ .++... +++.++++|..+|+++.....
T Consensus 276 ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~----k~G~~~vlDr~tG~~i~~~~~ 351 (596)
T d1w6sa_ 276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD----RNGIVYTLDRTDGALVSANKL 351 (596)
T ss_dssp TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC----TTSEEEEEETTTCCEEEEEES
T ss_pred ccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc----cccceeeecCCCCceeeeccc
Confidence 23577788888888776544221 111111 233444 233332 488999999999987753221
Q ss_pred ccC------------c--------------------------ceEEEEEcCCCCEEEEEEC-------------------
Q 002264 583 FRK------------K--------------------------SNGVVQFDTTQNHFLAVGE------------------- 605 (945)
Q Consensus 583 ~~~------------~--------------------------~~~~~~~~~~~~~l~~~~~------------------- 605 (945)
... . .-...+++|+...++....
T Consensus 352 ~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~ 431 (596)
T d1w6sa_ 352 DDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFF 431 (596)
T ss_dssp STTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccc
Confidence 000 0 0012356666555554321
Q ss_pred --------------------CCcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCcccc
Q 002264 606 --------------------DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (945)
Q Consensus 606 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~ 665 (945)
-|.|.-||+.+++.+....... ++.+-.++..|.+++.|+.||.++.+|.++|+.+-
T Consensus 432 ~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~---~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW 508 (596)
T d1w6sa_ 432 VGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (596)
T ss_dssp CCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCC---CCccceeEecCCEEEEECCCCeEEEEECCCCcEee
Confidence 1467888888888876654432 22322334467788889999999999999995443
Q ss_pred ccccCCccccccCcceeeeecccccc
Q 002264 666 RAVENPPFEALRTPIESVALKVSASS 691 (945)
Q Consensus 666 ~~~~~~~~~~~~~~i~~v~~s~~g~~ 691 (945)
.+.... ... -.-+.+..+|+.
T Consensus 509 -~~~~~~-~~~---a~P~tY~~dGkQ 529 (596)
T d1w6sa_ 509 -KFKIPS-GAI---GYPMTYTHKGTQ 529 (596)
T ss_dssp -EEECSS-CCC---SCCEEEEETTEE
T ss_pred -EEECCC-Ccc---cCCeEEEECCEE
Confidence 322111 111 122456678875
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00036 Score=60.01 Aligned_cols=78 Identities=13% Similarity=0.264 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHH
Q 002264 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (945)
Q Consensus 71 ~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (945)
.++|+|+-+.||||+..|...+|..|+.+.-..+...+.+++++|+.+....+..+++....++. ++.+-..|
T Consensus 44 ~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lL 123 (149)
T d2nxpa1 44 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL 123 (149)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHH
Confidence 39999999999999999999999999998877777778899999999999888887777666654 33444666
Q ss_pred HHHHH
Q 002264 144 LIELK 148 (945)
Q Consensus 144 ~~~l~ 148 (945)
+..|+
T Consensus 124 l~~L~ 128 (149)
T d2nxpa1 124 KRHLQ 128 (149)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66665
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.86 E-value=0.00043 Score=50.05 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhhCCCCC--HHHHHHHHhccCHHHHHHHHcC
Q 002264 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYLSG 59 (945)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (945)
++|+.+-|++||..+||.+++.+|++|+.+.++ ...-..-+++-.|..+..+-++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 689999999999999999999999999998876 4444555777788777765444
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=96.67 E-value=0.00042 Score=58.07 Aligned_cols=78 Identities=12% Similarity=0.216 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHH
Q 002264 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (945)
Q Consensus 71 ~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (945)
.++|+++.+.||||+..|..++|.+|+.+.-..+. .+.+++++|+.+....+..+++....++. +..+-..|
T Consensus 26 ~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s~~lL 104 (131)
T d2j4ba1 26 PLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLL 104 (131)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHHHHHH
Confidence 39999999999999999999999999998755553 47788999999888777766665544432 33444566
Q ss_pred HHHHHh
Q 002264 144 LIELKK 149 (945)
Q Consensus 144 ~~~l~~ 149 (945)
+..|++
T Consensus 105 ~~fL~~ 110 (131)
T d2j4ba1 105 INFLEE 110 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.31 E-value=0.97 Score=48.43 Aligned_cols=199 Identities=10% Similarity=0.058 Sum_probs=107.8
Q ss_pred EEEEEECCCcEEEEEccCCccccccee----ecccc---ccE-EEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEe
Q 002264 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQ----IDAHV---GAV-NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (945)
Q Consensus 420 ~las~~~dg~i~vwd~~~~~~~~~~~~----~~~h~---~~v-~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~ 490 (945)
.|..++.++.|.-+|.++|+.+-.... ...+. ..+ ..+... ++ .++.++.|+.+.-.| .+|+.+...
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~---~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KG---KVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CC---cEEEEecccceeeeccccccceecc
Confidence 444555666677777777765421100 00000 011 122332 22 456677899998889 899887655
Q ss_pred cCC--C-CCEE--EEEeeecCCccEEEEEEc------CCeEEEEEccCCCeeEEecCCC---------------------
Q 002264 491 EGH--E-APVY--SICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPG--------------------- 538 (945)
Q Consensus 491 ~~~--~-~~v~--~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~--------------------- 538 (945)
... . ..+. +.-... + ..++.++. .|.|+.+|.++++.+..+....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~--~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~ 231 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVF--K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred cCccCCcceEEeecceEEE--e-ccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCC
Confidence 422 1 1111 100001 2 24455432 4689999999999888653311
Q ss_pred ----------CeE-EEEEEcCCCCEEEEEeec---------------CCCCceEEEEeCCCCceeeEeccccCc------
Q 002264 539 ----------HWC-TTMLYSADGSRLFSCGTS---------------KDGDSFLVEWNESEGTIKRTYAGFRKK------ 586 (945)
Q Consensus 539 ----------~~i-~~~~~s~~~~~l~~~~~~---------------~d~~~~i~iwd~~~~~~~~~~~~~~~~------ 586 (945)
..+ ...++.++...++..... ......|.-.|..+++..-.++.....
T Consensus 232 ~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~ 311 (573)
T d1kb0a2 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (573)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred CCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccc
Confidence 011 134566666666543320 112336777888888887666542210
Q ss_pred --ceEEEEEcCCC---CEEEEEECCCcEEEEECCCCeeEEEeec
Q 002264 587 --SNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (945)
Q Consensus 587 --~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (945)
.........++ ..++.++.+|.++++|..+|+.+.....
T Consensus 312 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~ 355 (573)
T d1kb0a2 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (573)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cceeeecceecCCCceeeeeeccccceeEEeccccccccccccc
Confidence 11112222233 3566677999999999999998876643
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.09 E-value=0.0011 Score=55.73 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCCCCCccch---hhHHHHHHHHHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccc
Q 002264 50 WDEVEKYLSGFTKVDDNRYS---MKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRE 126 (945)
Q Consensus 50 w~~~~~~l~~~~~~~~~~~~---~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (945)
++++...|..+.....+.++ ..++|+++-+.||||+..+ ..+|.+|+.+.-..+...+.+++++|+.+....+..+
T Consensus 4 Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~ 82 (134)
T d2j49a1 4 YIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKE 82 (134)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 44555555554222223222 3499999999999999976 5689999998777776667788888888888777776
Q ss_pred hhhhcccCC-------chHHHHHHHHHHHh
Q 002264 127 NEQLSKYGD-------TKTARGIMLIELKK 149 (945)
Q Consensus 127 ~~~~~~~~~-------~~~~r~~l~~~l~~ 149 (945)
++....+.. +..+-..|+..|++
T Consensus 83 n~~~~~~r~nKy~I~ms~~s~~lLl~fL~~ 112 (134)
T d2j49a1 83 NEVASAFQSHKYRITMSKTTLNLLLYFLNE 112 (134)
T ss_dssp CHHHHHHHSSCEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCeEEEEcHHHHHHHHHHHHh
Confidence 666554433 34444666666654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.67 E-value=1.8 Score=46.25 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=50.6
Q ss_pred CcEEEEECCCCeeEEEeecCCCCCCccEEEEcCCCCEEEEEECCCcEEEEECCCCccccccccCCccccccCcceeeeec
Q 002264 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (945)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s 686 (945)
|.|.-+|+.+|+.+.....+. ++..-..+..|.++++|+.||.++.+|.++|+.+-+ +.... ... -.-+.+.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~---p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~-~~~~~-~~~---~~P~ty~ 537 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGS-GIV---SPPITWE 537 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS-CCC---SCCEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCC---CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE-EECCC-Ccc---ccCEEEE
Confidence 568889999999888776543 233323345677888899999999999999954432 22111 111 1225677
Q ss_pred ccccc
Q 002264 687 VSASS 691 (945)
Q Consensus 687 ~~g~~ 691 (945)
.+|+.
T Consensus 538 ~~G~q 542 (582)
T d1flga_ 538 QDGEQ 542 (582)
T ss_dssp ETTEE
T ss_pred ECCEE
Confidence 78865
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.49 E-value=1.3 Score=43.39 Aligned_cols=188 Identities=13% Similarity=0.163 Sum_probs=110.2
Q ss_pred EEEEEeCCCcEEEEeCCCceEEEecCCCCCEEEEEeee----cCCccEEEEEEc--C--CeEEEEEccCCCe-eEEecCC
Q 002264 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH----KENIQFIFSTAI--D--GKIKAWLYDTMGS-RVDYDAP 537 (945)
Q Consensus 467 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~--d--g~i~iwd~~~~~~-~~~~~~~ 537 (945)
+++...+.+-|.+||++|+.+..+. .+.++.+.... ..+...++.++. + .+|.+|.+..... ...+...
T Consensus 42 lI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~ 119 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP 119 (353)
T ss_dssp EEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred EEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence 5666677777999999999998875 35666665432 112223444442 2 3688888764332 2222221
Q ss_pred -------CCeEEEEEE--cCC-CCEEEEEeecCCCCceEEEEeCC---CC----ceeeEeccccCcceEEEEEcCCCCEE
Q 002264 538 -------GHWCTTMLY--SAD-GSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (945)
Q Consensus 538 -------~~~i~~~~~--s~~-~~~l~~~~~~~d~~~~i~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~l 600 (945)
...+..+|+ ++. |...+..+. .++.+..|.+. .+ +.++.+... ..+..|.+......|
T Consensus 120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~---k~G~v~q~~l~~~~~g~v~~~lvr~f~~~--~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTG---KEGEFEQYELNADKNGYISGKKVRAFKMN--SQTEGMAADDEYGSL 194 (353)
T ss_dssp SSCEECSSSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSSEEEEEEEEEECS--SCEEEEEEETTTTEE
T ss_pred ccccccccCcceEEEEEecCCCCeEEEEEEc---CCceEEEEEEEcCCCCceeeEeeeccCCC--CccceEEEeCCCCcE
Confidence 113555565 664 544444442 47778777653 23 344555443 257888999999999
Q ss_pred EEEECCCcEEEEECCC-----CeeEEEeecCCCCCCccEEEEcC--C--CCEEEEEECCCcEEEEECCCC
Q 002264 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--E--GNLLAVTTADNGFKILANAIG 661 (945)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~sp--~--g~~l~~~~~dg~i~iw~~~~~ 661 (945)
+.+-++.-|+.++.+. +..+.......-...+-.++.-. + |-+|++.-.+++..+|+..+.
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999887777776542 22332222222234566776543 3 334455545789999998764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.70 E-value=2.2 Score=41.78 Aligned_cols=184 Identities=8% Similarity=0.096 Sum_probs=98.9
Q ss_pred EEEEEEecCCCeeEEEEEe------------CCCcEEEEe-CCCc-eEEEec--CC-----CCCEEEEEeeecCCcc-EE
Q 002264 454 VNDLAFAYPNKLLCVVTCG------------DDKLIKVWE-LSGR-KLFNFE--GH-----EAPVYSICPHHKENIQ-FI 511 (945)
Q Consensus 454 v~~l~~s~~~~~~~l~s~s------------~d~~i~vwd-~~~~-~~~~~~--~~-----~~~v~~~~~~~~~~~~-~l 511 (945)
.-+|+..|+|. .+++++ ..|.|.++| .+.. ....+. +. .-....+.+....+|. +|
T Consensus 37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 34566777775 444443 137888888 3322 222221 11 1234555554444554 34
Q ss_pred EEEE---cCCeEEEEEccCCCeeEE----ecCC-CCeEEEEEEcCCCCEEEEEeec-------------CCCCceEEEEe
Q 002264 512 FSTA---IDGKIKAWLYDTMGSRVD----YDAP-GHWCTTMLYSADGSRLFSCGTS-------------KDGDSFLVEWN 570 (945)
Q Consensus 512 ~s~~---~dg~i~iwd~~~~~~~~~----~~~~-~~~i~~~~~s~~~~~l~~~~~~-------------~d~~~~i~iwd 570 (945)
++.. ...+|.+|++........ +... ....+.+++..++.++++--.. +...+.+..||
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 4432 456788888865543322 2111 2357889998999888773210 01234455555
Q ss_pred CCCCceeeEeccccCcceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeeE---EEeecCCCCCCccEEEEcC-CCCEEE
Q 002264 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNIL---TSTDAEGGLPNLPRLRFSK-EGNLLA 645 (945)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~sp-~g~~l~ 645 (945)
... ......+. ...+.++++|++++|+++. ..+.|+.|++.....+ ..+.... ..-.+.+.+ +|.+.+
T Consensus 195 ~~~--~~~~~~~l--~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~---~pDNi~~d~~~g~lwv 267 (340)
T d1v04a_ 195 PND--VRVVAEGF--DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT---LVDNISVDPVTGDLWV 267 (340)
T ss_dssp SSC--EEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSS---EEEEEEECTTTCCEEE
T ss_pred CCc--eEEEcCCC--CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCC---CCCccEEecCCCEEEE
Confidence 433 22222222 2467899999998887776 6788999998754322 2222221 345677765 444443
Q ss_pred E
Q 002264 646 V 646 (945)
Q Consensus 646 ~ 646 (945)
.
T Consensus 268 a 268 (340)
T d1v04a_ 268 G 268 (340)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.51 E-value=5.2 Score=38.94 Aligned_cols=189 Identities=10% Similarity=0.015 Sum_probs=101.7
Q ss_pred EEEEEEcCCCCEEEEEEC------------CCcEEEEEccCCcccccceeeccc-----cccEEEEEE--ecCCCeeEEE
Q 002264 409 VSRVAWSPDGNYVGVAFT------------KHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAF--AYPNKLLCVV 469 (945)
Q Consensus 409 V~~i~~s~~g~~las~~~------------dg~i~vwd~~~~~~~~~~~~~~~h-----~~~v~~l~~--s~~~~~~~l~ 469 (945)
-..|+..|+|..+++++. .|.|.++|+++.........+.+. .-....+.. .++|.. +|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~ 115 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLL 115 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEE
Confidence 446888899988776642 488999998865432211111111 112233333 456664 344
Q ss_pred EE---eCCCcEEEEe--CCCceEE---EecC-CCCCEEEEEeeecCCccEEEEEEc---------------CCeEEEEEc
Q 002264 470 TC---GDDKLIKVWE--LSGRKLF---NFEG-HEAPVYSICPHHKENIQFIFSTAI---------------DGKIKAWLY 525 (945)
Q Consensus 470 s~---s~d~~i~vwd--~~~~~~~---~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~ 525 (945)
.. ....+|.+|+ ..+..+. ++.. .....+++++.. ++.+++|-.. -++..+|..
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~--~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~ 193 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 193 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec--CCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence 43 2456788888 3333322 2221 223467777754 5567766311 123344544
Q ss_pred cCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCCceeeEec-cccCcceEEEEEcCCCCEEEEEE
Q 002264 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFRKKSNGVVQFDTTQNHFLAVG 604 (945)
Q Consensus 526 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 604 (945)
+.+...... ..-...+.++++||+++|+++.. ..+.|+.|++.......... ..-......+.+.+.+..+.+++
T Consensus 194 ~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 194 SPNDVRVVA-EGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp CSSCEEEEE-EEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred cCCceEEEc-CCCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 444433322 22345789999999999988765 36789999886543222111 11122355677776443344443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.14 E-value=5.7 Score=38.59 Aligned_cols=199 Identities=13% Similarity=0.204 Sum_probs=111.6
Q ss_pred CCCCEEEEEECCCcEEEEEccCCcccccceeeccccccEEEEEEec----CCCeeEEEEEe--CC--CcEEEEe--CCCc
Q 002264 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY----PNKLLCVVTCG--DD--KLIKVWE--LSGR 485 (945)
Q Consensus 416 ~~g~~las~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~----~~~~~~l~s~s--~d--~~i~vwd--~~~~ 485 (945)
|+..+++....++-|.+||++ |+.+.. + ..+.+..+..-. .++..-++.++ .+ .+|.+|. ....
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~---~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~ 111 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHS---Y--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEE---C--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEe---c--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence 345677766677679999996 555542 2 234555555432 23321233333 22 3577787 3445
Q ss_pred eEEEecCCC-------CCEEEEEeeecC-Cc-cEEEEEEcCCeEEEEEccCCC-------eeEEecCCCCeEEEEEEcCC
Q 002264 486 KLFNFEGHE-------APVYSICPHHKE-NI-QFIFSTAIDGKIKAWLYDTMG-------SRVDYDAPGHWCTTMLYSAD 549 (945)
Q Consensus 486 ~~~~~~~~~-------~~v~~~~~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~i~~~~~s~~ 549 (945)
.+..+.... ..++.+|+..++ ++ -+++....+|.+..|.+.... .+..+.. ...+..+.+...
T Consensus 112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde 190 (353)
T d1h6la_ 112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (353)
T ss_dssp EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCC
Confidence 555554322 246788874332 23 356777889999988764321 1123332 346888889998
Q ss_pred CCEEEEEeecCCCCceEEEEeCC--C---CceeeEecc-ccCcceEEEEEcC--CC-CEEEEEE-CCCcEEEEECCC-Ce
Q 002264 550 GSRLFSCGTSKDGDSFLVEWNES--E---GTIKRTYAG-FRKKSNGVVQFDT--TQ-NHFLAVG-EDSQIKFWDMDN-VN 618 (945)
Q Consensus 550 ~~~l~~~~~~~d~~~~i~iwd~~--~---~~~~~~~~~-~~~~~~~~~~~~~--~~-~~l~~~~-~dg~i~iwd~~~-~~ 618 (945)
...|+.+-. +..++.++.. . +..+....+ +-...+..+++-. ++ .+|++.+ .+++..+||..+ ..
T Consensus 191 ~~~LyisEE----~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~ 266 (353)
T d1h6la_ 191 YGSLYIAEE----DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK 266 (353)
T ss_dssp TTEEEEEET----TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred CCcEEEecC----ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence 888888742 4445555543 1 222222222 2222456665432 33 3666555 688999999876 46
Q ss_pred eEEEeec
Q 002264 619 ILTSTDA 625 (945)
Q Consensus 619 ~~~~~~~ 625 (945)
.+..+..
T Consensus 267 ~~g~F~i 273 (353)
T d1h6la_ 267 YVADFQI 273 (353)
T ss_dssp EEEEEEE
T ss_pred ccceEEE
Confidence 6666543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.54 E-value=4 Score=35.62 Aligned_cols=222 Identities=11% Similarity=0.094 Sum_probs=114.0
Q ss_pred CCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEc-CCCCEEEEE------ECC
Q 002264 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-PDGNYVGVA------FTK 427 (945)
Q Consensus 355 ~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s-~~g~~las~------~~d 427 (945)
++..+|+++...|.+.++-+..++.+.- ...+|....-- +.-.++..+ -.-
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkL----------------------tkePI~~~~~Pk~~ldfi~f~RDV~kGkE~ 81 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKL----------------------NREPINSVLDPHYGVGRVILVRDVSKGAEQ 81 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEEC----------------------CSSCCSEECEECTTBSEEEEEEECSTTSCC
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEEEE----------------------ecccccCcCCCccCcceEEEEeehhcCcce
Confidence 4555888888899999999888876531 11222211110 011111111 111
Q ss_pred CcEEEEEccC-Ccccccceeecccc-ccEEEEEEecCCCeeEEEEEeCCCcEEEEeCCCceEEEecCC--CCCEEEE---
Q 002264 428 HLIQLYSYAG-SNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EAPVYSI--- 500 (945)
Q Consensus 428 g~i~vwd~~~-~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--~~~v~~~--- 500 (945)
..|.+-+++. |+.. .+.... -.|.+++. |++. ...+|+......+|-..|..+..+..- -+.|+.+
T Consensus 82 Hai~~~Nlk~~GEE~----~i~spk~vRI~S~~y--ddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d 154 (313)
T d2hu7a1 82 HALFKVNTSRPGEEQ----RLEAVKPMRILSGVD--TGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGD 154 (313)
T ss_dssp EEEEEEETTSTTCEE----ECTTSCSBEEEEEEE--CSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETT
T ss_pred eeEEEEccCCCCeee----EecCCceEEEEEeee--cCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCC
Confidence 2244444431 2211 122222 23555554 5665 666777777777888444444444321 1234433
Q ss_pred -----EeeecCCccEEEEEEc-CCeEEEEEccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEeecCCCCceEEEEeCCCC
Q 002264 501 -----CPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (945)
Q Consensus 501 -----~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~d~~~~i~iwd~~~~ 574 (945)
.+.. ++..-++++.. .|.++++ ....+.++...+.+..+. ++.- ..-++....-+|++++
T Consensus 155 ~I~G~g~~~-g~~~sfF~adl~SG~lri~-----------tpkeGS~~~ay~~~gnKV-~sdy-Et~gEsywit~D~~s~ 220 (313)
T d2hu7a1 155 LIAGLGFFG-GGRVSLFTSNLSSGGLRVF-----------DSGEGSFSSASISPGMKV-TAGL-ETAREARLVTVDPRDG 220 (313)
T ss_dssp EEEEEEEEE-TTEEEEEEEETTTEEEEEE-----------CCSSEEEEEEEECTTSCE-EEEE-EESSCEEEEEECTTTC
T ss_pred eEEEEeeec-CCcceEEEEecccCCEEEe-----------cCCCCcccceeEccCcee-eecc-CCCCceEEEEEecccC
Confidence 2211 12222333333 4445544 344456777777776665 3332 2223445556788877
Q ss_pred ceeeE-ecc-----ccCcceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEE
Q 002264 575 TIKRT-YAG-----FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (945)
Q Consensus 575 ~~~~~-~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (945)
+..+. +.. ...-.+.-+-+.|+++.++.+-.||.=.+|. +|+.+.
T Consensus 221 ~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in 271 (313)
T d2hu7a1 221 SVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVE 271 (313)
T ss_dssp CEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred ceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence 65432 111 1112355566899999989999999999887 455543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.14 E-value=4.7 Score=37.94 Aligned_cols=109 Identities=9% Similarity=0.003 Sum_probs=50.4
Q ss_pred cEEEEEEcC-----CeEEEEEccCCCeeEEecCCCC-eEEEEEEcCCCCEEEEEeecC-CCCceEEEEeCCCCceeeEec
Q 002264 509 QFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEGTIKRTYA 581 (945)
Q Consensus 509 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~-d~~~~i~iwd~~~~~~~~~~~ 581 (945)
.+++.|+.+ ..+..||..+.+....-..... ...+... .+++.++.++.+. ........+|..+.+....-.
T Consensus 150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
T d1zgka1 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 228 (288)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred cceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC
Confidence 455555543 3467777665433221111111 1112222 2344555544321 112456778877765443222
Q ss_pred cccCcceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCee
Q 002264 582 GFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNI 619 (945)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 619 (945)
......-..++. .+++.++.|+.++ .+.+||+.+..-
T Consensus 229 ~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 270 (288)
T d1zgka1 229 MKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 270 (288)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred ccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence 111111122222 3567777776543 377888887653
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.55 E-value=5 Score=35.00 Aligned_cols=148 Identities=11% Similarity=0.123 Sum_probs=74.0
Q ss_pred cEEEEEEcCCeEEEEEccCCCeeEEecCCCCeEEEEEE-cCCCCEEEEEee--cCCCCceEEEEeCCCCceeeEeccccC
Q 002264 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY-SADGSRLFSCGT--SKDGDSFLVEWNESEGTIKRTYAGFRK 585 (945)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~--~~d~~~~i~iwd~~~~~~~~~~~~~~~ 585 (945)
++++.+...|.+.++-+..++.+..... +|..... .+.=.++..+-. .+.....|++-++...-....+.....
T Consensus 27 ~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~ 103 (313)
T d2hu7a1 27 KLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP 103 (313)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCS
T ss_pred cEEEEEeccceEEEEEEeCCEEEEEecc---cccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCce
Confidence 6888888999999998776655443222 2221111 111122222211 011123344555443222233333321
Q ss_pred cceEEEEEcCCCCEEEEEECCCcEEEEECCCCeeEEEeecCCCCCCcc--------EEE-EcCCCCEEEEEEC-CCcEEE
Q 002264 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP--------RLR-FSKEGNLLAVTTA-DNGFKI 655 (945)
Q Consensus 586 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~--------~v~-~sp~g~~l~~~~~-dg~i~i 655 (945)
-.+.+++.. +.+..++|+......+|-++.|.+......+. .+-|+ .+. +.++..-++++.- .|.+++
T Consensus 104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence 123444433 34677778888888999998888765544432 11222 222 2233333455554 677777
Q ss_pred EECCCC
Q 002264 656 LANAIG 661 (945)
Q Consensus 656 w~~~~~ 661 (945)
++...|
T Consensus 182 ~tpkeG 187 (313)
T d2hu7a1 182 FDSGEG 187 (313)
T ss_dssp ECCSSE
T ss_pred ecCCCC
Confidence 776554
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.29 E-value=1.7 Score=43.06 Aligned_cols=149 Identities=10% Similarity=0.007 Sum_probs=88.8
Q ss_pred ceEEEEEecCCCeEEEeeecCeEEEEeecCCCCCCCCceeeeeccccccCCCcccccccccCCCcCCceeEEeecCCCce
Q 002264 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (945)
Q Consensus 766 ~v~~l~~s~dg~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~l~~s~dg~~ 845 (945)
...-+++++....+++++.++ ++|-....-.. .+-....+....... .-..|..++|+.| .
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~------------~~~~~~~~~~~~~~~----~ip~v~~vafs~d--~ 98 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRD------------HITSDSTPLTFKWEK----EIPDVIFVCFHGD--Q 98 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHH------------HHHSSSCCCCCSEEE----ECTTEEEEEEETT--E
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHH------------HhhccCCCCcceecc----CCCCeEEEEeeCC--E
Confidence 456788888877777776664 55654321000 000000000111111 1235888999755 5
Q ss_pred EEecCCCeEEEEeccCceEEEEecCCCCCeeEEEeecCCCceEEEeecCceEEEEecccceEEEEecC-----CCcceeE
Q 002264 846 VMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG-----HQKRITG 920 (945)
Q Consensus 846 la~~sd~~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~~~~~~lasg~~dg~v~vwd~~~~~~~~~l~~-----h~~~V~~ 920 (945)
+++..++.+..++..+............++..+.+.| . .++....+|.+.++++..+.......+ -.+.+.+
T Consensus 99 l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~ 175 (381)
T d1xipa_ 99 VLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLA 175 (381)
T ss_dssp EEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEE
T ss_pred EEEEeCCCEEEEEeeccccccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceE
Confidence 6666677788888765444333333455688888877 3 455667789999999988753322111 2366889
Q ss_pred EEecCCcceeeeecCC
Q 002264 921 LAFSTSLNILVSSGAD 936 (945)
Q Consensus 921 l~~s~dg~~l~s~~~D 936 (945)
++|++.|..++++..+
T Consensus 176 v~ws~kgkq~v~~~g~ 191 (381)
T d1xipa_ 176 VLLKDRSFQSFAWRNG 191 (381)
T ss_dssp EEETTSCEEEEEEETT
T ss_pred EEEeCCcEEEEEeCCC
Confidence 9999999999887543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=2.6 Score=39.90 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=35.9
Q ss_pred CCceEEecC-C-----CeEEEEeccCceEEEEecCCCCCe-eEEEeecCCCceEEEeecCc-----eEEEEecccce
Q 002264 842 NDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDE 906 (945)
Q Consensus 842 dg~~la~~s-d-----~~i~iwd~~~~~~~~~~~~h~~~i-~~l~~s~~~~~~lasg~~dg-----~v~vwd~~~~~ 906 (945)
+++.++.++ + .....+|..+.+....-....... .+++. - ++++++.|+.++ .|.+||+.+.+
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-H-QGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-E-CCEEEEEecCCCCeecceEEEEECCCCE
Confidence 455666654 3 236788877655433222222222 23333 3 678888887654 37889998764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.00 E-value=23 Score=34.55 Aligned_cols=187 Identities=11% Similarity=0.040 Sum_probs=94.2
Q ss_pred cEEEEEEeCCCCeEEEEEeCcCcEEEEEcCCCCcccccccccccccccCcccccccccCCCccEEEEEEcCCCCEEEEEE
Q 002264 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (945)
Q Consensus 346 ~V~~v~fsp~g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~g~~las~~ 425 (945)
...-++.++... |++.|+.++ ++|-.+..-+..... ......++.. . .-..|..++|+.| .|+...
T Consensus 38 ~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~-------~~~~~~~~~~-~--~ip~v~~vafs~d--~l~v~~ 103 (381)
T d1xipa_ 38 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITS-------DSTPLTFKWE-K--EIPDVIFVCFHGD--QVLVST 103 (381)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHS-------SSCCCCCSEE-E--ECTTEEEEEEETT--EEEEEE
T ss_pred ccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhc-------cCCCCcceec-c--CCCCeEEEEeeCC--EEEEEe
Confidence 456788888776 677777665 567664321110000 0000000000 0 1125899999754 565554
Q ss_pred CCCcEEEEEccCCcccccceeeccccccEEEEEEecCCCeeEEEEEeCCCcEEEEe-CCCceEEEec-----CCCCCEEE
Q 002264 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-----GHEAPVYS 499 (945)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~~l~s~s~d~~i~vwd-~~~~~~~~~~-----~~~~~v~~ 499 (945)
++.+..++...-.... ....-..++..+.++|. .++....++.+.+++ .+++...... .-.+.+.+
T Consensus 104 -~~~l~~~~~~~l~~~~---~~~~~~~~~~~~~~~p~----~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~ 175 (381)
T d1xipa_ 104 -RNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLA 175 (381)
T ss_dssp -SSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEE
T ss_pred -CCCEEEEEeecccccc---ccccccccccceecCCc----eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceE
Confidence 4567778776533322 22234567888888875 345566688999999 5554322111 11244556
Q ss_pred EEeeecCCccEEEEEEcCCeEEEE-EccCCCeeEEecCCCCeEEEEEEcCCCCEEEEEe
Q 002264 500 ICPHHKENIQFIFSTAIDGKIKAW-LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (945)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 557 (945)
++|++ .|..++++..++ ..+- ++...............+.++.|-.+..++++.+
T Consensus 176 v~ws~--kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 176 VLLKD--RSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EEETT--SCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEeC--CcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 66543 345555543221 1111 1111110000011234688999987766666543
|