Citrus Sinensis ID: 002324
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 936 | 2.2.26 [Sep-21-2011] | |||||||
| P36428 | 1003 | Alanine--tRNA ligase OS=A | yes | no | 0.934 | 0.872 | 0.806 | 0.0 | |
| P40825 | 983 | Alanine--tRNA ligase, mit | yes | no | 0.936 | 0.892 | 0.518 | 0.0 | |
| Q5A8K2 | 969 | Alanine--tRNA ligase OS=C | N/A | no | 0.935 | 0.904 | 0.512 | 0.0 | |
| Q54Y20 | 946 | Alanine--tRNA ligase, cyt | yes | no | 0.910 | 0.900 | 0.526 | 0.0 | |
| Q8CFX8 | 968 | Alanine--tRNA ligase, cyt | N/A | no | 0.900 | 0.870 | 0.511 | 0.0 | |
| P50475 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.900 | 0.870 | 0.511 | 0.0 | |
| Q5RC02 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.900 | 0.870 | 0.510 | 0.0 | |
| Q8BGQ7 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.900 | 0.870 | 0.511 | 0.0 | |
| P49588 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.900 | 0.870 | 0.510 | 0.0 | |
| O13914 | 959 | Alanine--tRNA ligase OS=S | yes | no | 0.884 | 0.863 | 0.523 | 0.0 |
| >sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3 | Back alignment and function desciption |
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Score = 1464 bits (3791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/875 (80%), Positives = 784/875 (89%)
Query: 45 VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP 104
VA MPG++P +WPA +VRDT+ FF K H W SSPVVP NDPTLLFANAGMNQYKP
Sbjct: 46 VAVMPGSEPSETQWPAKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKP 105
Query: 105 IFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 164
IFLGTADPNT+LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK
Sbjct: 106 IFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 165
Query: 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCK 224
EAIEWAWELLTKVY LP DR+YATYFGGDEKAGL PDNEARDIWLK LP+ RVLPFGCK
Sbjct: 166 KEAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPDNEARDIWLKVLPSGRVLPFGCK 225
Query: 225 DNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284
DNFWEMGDTGPCGPC+EIHYDR GNRDAASLVNNDDPTC+EIWN+VFIQFNRESDGSLKP
Sbjct: 226 DNFWEMGDTGPCGPCTEIHYDRIGNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKP 285
Query: 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVD 344
LPAKHVDTG+GFERLTS+LQNKMSNYDTDVFMPIFD IQ+ATGARPYSGKVG +D D+VD
Sbjct: 286 LPAKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVD 345
Query: 345 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404
MAYRVVADHIRTLSFAIADGS PGNEGREYVLRRILRRAVRYG E+LKA++GFFNGLV+
Sbjct: 346 MAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSS 405
Query: 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI 464
V++VMGDVF ELK+ E I +II EEASF KTL KGIEKF+KA Q VQG LSG DAFI
Sbjct: 406 VIRVMGDVFTELKEHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAVQGNTLSGDDAFI 465
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
LWDTYGFPLDLTQLMAEERGLLVD++GFN AM+EARERSRSAQNKQAGGAIVMDADAT+
Sbjct: 466 LWDTYGFPLDLTQLMAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMDADATST 525
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
LHK GV ATDDSFK+IWFQDH+S +KAIYTGS F+ES + VG+VL S+SFYAEQGGQ
Sbjct: 526 LHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAEQGGQ 585
Query: 585 IFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPN 644
IFD G IEG FG+F V NVQI+GGFV+HIG L++ G SVG++VICKVDY+RRKLIAPN
Sbjct: 586 IFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKLIAPN 645
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
HTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLRFDFSHGKPVDPE LRRIESIVN+QIK E
Sbjct: 646 HTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQIKDE 705
Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 764
LDVFSKEA L+EAK I GLRAVFGEVYPDPVRVV+IGRKVEDLLADPEN EW +S+E C
Sbjct: 706 LDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLSSEFC 765
Query: 765 GGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGS 824
GGTH++NTREA+AFALLSEEGIAKGIRR+TAVTT A+ A AA LE+EV+DAS+ EGS
Sbjct: 766 GGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASRAEGS 825
Query: 825 LLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETA 884
LEK V++LKS+VD A IPA KKADIR KIA LQN+VRKAQKK+AE+NL+K+VK+ATE A
Sbjct: 826 ALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLATEAA 885
Query: 885 EAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK 919
E+AAS+GK FCI +++VGLDAAAVREAV KV+E+K
Sbjct: 886 ESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKK 920
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Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7 |
| >sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=alaS PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 | Back alignment and function description |
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| >sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 | Back alignment and function description |
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| >sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 | Back alignment and function description |
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| >sp|O13914|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ala1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 936 | ||||||
| 225423779 | 1002 | PREDICTED: alanyl-tRNA synthetase-like [ | 0.945 | 0.883 | 0.846 | 0.0 | |
| 255580622 | 1025 | alanyl-tRNA synthetase, putative [Ricinu | 0.934 | 0.853 | 0.850 | 0.0 | |
| 449461691 | 956 | PREDICTED: alanine--tRNA ligase-like [Cu | 0.946 | 0.926 | 0.821 | 0.0 | |
| 449508396 | 956 | PREDICTED: LOW QUALITY PROTEIN: alanine- | 0.946 | 0.926 | 0.819 | 0.0 | |
| 297737260 | 960 | unnamed protein product [Vitis vinifera] | 0.931 | 0.908 | 0.841 | 0.0 | |
| 224083946 | 973 | predicted protein [Populus trichocarpa] | 0.943 | 0.907 | 0.830 | 0.0 | |
| 30694735 | 1003 | Alanyl-tRNA synthetase [Arabidopsis thal | 0.934 | 0.872 | 0.806 | 0.0 | |
| 356538581 | 950 | PREDICTED: alanyl-tRNA synthetase-like [ | 0.927 | 0.913 | 0.794 | 0.0 | |
| 297852712 | 955 | cytosolic tRNA-Ala synthetase [Arabidops | 0.931 | 0.913 | 0.808 | 0.0 | |
| 5734779 | 955 | cytosolic tRNA-Ala synthetase [Arabidops | 0.931 | 0.913 | 0.807 | 0.0 |
| >gi|225423779|ref|XP_002277341.1| PREDICTED: alanyl-tRNA synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1580 bits (4091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/885 (84%), Positives = 812/885 (91%)
Query: 35 SLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLF 94
S + S +AV M VEWPA KVRDTF FFE KNHV+WKSSPVVPVNDPTLLF
Sbjct: 35 SFFTYSSEAAVIGMAQKAVSEVEWPANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLF 94
Query: 95 ANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEML 154
ANAGMNQ+KPIFLGTADPNT LSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEML
Sbjct: 95 ANAGMNQFKPIFLGTADPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEML 154
Query: 155 GNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLP 214
GNWSFGDYFK EAIEWAWELLTKVY+LP DR+YATYFGGDEK+GL+PD EARD+WLKFLP
Sbjct: 155 GNWSFGDYFKKEAIEWAWELLTKVYKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKFLP 214
Query: 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF 274
VLPFGCKDNFWEMGDTGPCGPC+EIH+DR GNRDAASLVNNDDPTCIEIWN+VFIQF
Sbjct: 215 PGHVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQF 274
Query: 275 NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGK 334
NRESDGSLK LPAKHVDTG+GFERLTSILQ KMSNYDTDVF+PIFDAIQQATGARPYSGK
Sbjct: 275 NRESDGSLKSLPAKHVDTGMGFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGK 334
Query: 335 VGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ 394
VG+DDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ
Sbjct: 335 VGSDDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ 394
Query: 395 DGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQG 454
+GFFN VNIVVKVMGDVFPELKQRE HIREIIA EEASFGKTLLKGIEKFKKAAQ+VQG
Sbjct: 395 EGFFNSFVNIVVKVMGDVFPELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEVQG 454
Query: 455 KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGA 514
K+L+GQDAF+LWDTYGFPLDLTQLMAEERGL+VD++GFN A+DEARERSRSAQNKQAGG
Sbjct: 455 KILNGQDAFVLWDTYGFPLDLTQLMAEERGLIVDVQGFNAALDEARERSRSAQNKQAGGT 514
Query: 515 IVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLAS 574
IVMDADAT+ALHKRGV TDDSFKF WFQDH SVIKAIY+GSEF+ES GNEVGIVL +
Sbjct: 515 IVMDADATSALHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLET 574
Query: 575 SSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVD 634
+SFYAEQGGQIFD G +EG GSF V NVQIYGGF++HIGS TE +GRFSVG++VICKVD
Sbjct: 575 TSFYAEQGGQIFDTGSLEGTSGSFQVCNVQIYGGFILHIGSFTEASGRFSVGDKVICKVD 634
Query: 635 YDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIE 694
YDRRK+IAPNHTCTHMLNFALREVLG+HVDQKGS+VLPEKLRFDFSHGKPV P+HLR+IE
Sbjct: 635 YDRRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLRKIE 694
Query: 695 SIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENK 754
SIVNEQI AELDVFSK+A+LA+AK INGLRAVFGEVYPDPVRVV+IG+KVEDLLADP N+
Sbjct: 695 SIVNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNE 754
Query: 755 EWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKE 814
+WLSISAELCGGTH+SNTREA+AFALLSEEGIAKGIRRITAVTT +A+KA E A SLE+E
Sbjct: 755 KWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIELARSLEQE 814
Query: 815 VDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQ 874
VDDASK EG LEK VASL+S+VD A IPA +KAD+RAKI+LLQ+QVRKAQKK AEEN+Q
Sbjct: 815 VDDASKTEGISLEKKVASLRSRVDSAPIPAARKADLRAKISLLQDQVRKAQKKFAEENIQ 874
Query: 875 KAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK 919
KAVK AT+ A+ AAS+GK FCIS V+VGLD AVREAVLKVIEQK
Sbjct: 875 KAVKAATDMAQLAASDGKTFCISHVDVGLDTTAVREAVLKVIEQK 919
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449461691|ref|XP_004148575.1| PREDICTED: alanine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449508396|ref|XP_004163302.1| PREDICTED: LOW QUALITY PROTEIN: alanine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224083946|ref|XP_002307181.1| predicted protein [Populus trichocarpa] gi|222856630|gb|EEE94177.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|30694735|ref|NP_175439.2| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|21542451|sp|P36428.3|SYA_ARATH RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; Flags: Precursor gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356538581|ref|XP_003537781.1| PREDICTED: alanyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana] gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 936 | ||||||
| TAIR|locus:2011962 | 1003 | ALATS "Alanyl-tRNA synthetase" | 0.964 | 0.900 | 0.769 | 0.0 | |
| SGD|S000005862 | 983 | ALA1 "Cytoplasmic and mitochon | 0.939 | 0.894 | 0.506 | 3.1e-234 | |
| CGD|CAL0001447 | 969 | ALA1 [Candida albicans (taxid: | 0.935 | 0.904 | 0.505 | 9.3e-233 | |
| UNIPROTKB|Q5A8K2 | 969 | ALA1 "Alanine--tRNA ligase" [C | 0.935 | 0.904 | 0.505 | 9.3e-233 | |
| DICTYBASE|DDB_G0277823 | 946 | alaS "alanine-tRNA ligase" [Di | 0.858 | 0.849 | 0.541 | 2.5e-232 | |
| POMBASE|SPAC23C11.09 | 959 | ala1 "mitochondrial and cytopl | 0.869 | 0.848 | 0.522 | 9.8e-222 | |
| UNIPROTKB|F1P5J5 | 916 | AARS "Uncharacterized protein" | 0.907 | 0.926 | 0.498 | 7.1e-219 | |
| UNIPROTKB|A6QLT9 | 968 | AARS "AARS protein" [Bos tauru | 0.799 | 0.772 | 0.543 | 1.7e-217 | |
| MGI|MGI:2384560 | 968 | Aars "alanyl-tRNA synthetase" | 0.903 | 0.873 | 0.503 | 5.7e-217 | |
| RGD|1304832 | 968 | Aars "alanyl-tRNA synthetase" | 0.907 | 0.877 | 0.498 | 7.3e-217 |
| TAIR|locus:2011962 ALATS "Alanyl-tRNA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3676 (1299.1 bits), Expect = 0., P = 0.
Identities = 695/903 (76%), Positives = 775/903 (85%)
Query: 17 ARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNH 76
+RV + L +H S ++S+VA MPG++P +WPA +VRDT+ FF K H
Sbjct: 18 SRVFYSSHLRRPFFSHFRFSSSSSTSSSVAVMPGSEPSETQWPAKRVRDTYVDFFRGKGH 77
Query: 77 VNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136
W SSPVVP NDPTLLFANAGMNQYKPIFLGTADPNT+LSKL+RACNTQKCIRAGGKHN
Sbjct: 78 KFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRACNTQKCIRAGGKHN 137
Query: 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEK 196
DLDDVGKDTYHHTFFEMLGNWSFGDYFK EAIEWAWELLTKVY LP DR+YATYFGGDEK
Sbjct: 138 DLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDEK 197
Query: 197 AGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLV 256
AGL PDNEARDIWLK LP+ RVLPFGCKDNFWEMGDTGPCGPC+EIHYDR GNRDAASLV
Sbjct: 198 AGLQPDNEARDIWLKVLPSGRVLPFGCKDNFWEMGDTGPCGPCTEIHYDRIGNRDAASLV 257
Query: 257 NNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFM 316
NNDDPTC+EIWN+VFIQFNRESDGSLKPLPAKHVDTG+GFERLTS+LQNKMSNYDTDVFM
Sbjct: 258 NNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMSNYDTDVFM 317
Query: 317 PIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376
PIFD IQ+ATGARPYSGKVG +D D+VDMAYRVVADHIRTLSFAIADGS PGNEGREYVL
Sbjct: 318 PIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVL 377
Query: 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGK 436
RRILRRAVRYG E+LKA++GFFNGLV+ V++VMGDVF ELK+ SF K
Sbjct: 378 RRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEHEKKITDIIKEEEASFCK 437
Query: 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAM 496
TL KGIEKF+KA Q VQG LSG DAFILWDTYGFPLDLTQLMAEERGLLVD++GFN AM
Sbjct: 438 TLAKGIEKFRKAGQAVQGNTLSGDDAFILWDTYGFPLDLTQLMAEERGLLVDVDGFNKAM 497
Query: 497 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGS 556
+EARERSRSAQNKQAGGAIVMDADAT+ LHK GV ATDDSFK+IWFQDH+S +KAIYTGS
Sbjct: 498 EEARERSRSAQNKQAGGAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGS 557
Query: 557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSL 616
F+ES + VG+VL S+SFYAEQGGQIFD G IEG FG+F V NVQI+GGFV+HIG L
Sbjct: 558 TFLESSAASDNVGLVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYL 617
Query: 617 TEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLR 676
++ G SVG++VICKVDY+RRKLIAPNHTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLR
Sbjct: 618 SKETGEVSVGDKVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLR 677
Query: 677 FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVR 736
FDFSHGKPVDPE LRRIESIVN+QIK ELDVFSKEA L+EAK I GLRAVFGEVYPDPVR
Sbjct: 678 FDFSHGKPVDPEDLRRIESIVNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVR 737
Query: 737 VVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAV 796
VV+IGRKVEDLLADPEN EW +S+E CGGTH++NTREA+AFALLSEEGIAKGIRR+TAV
Sbjct: 738 VVSIGRKVEDLLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAV 797
Query: 797 TTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIAL 856
TT A+ A AA LE+EV+DAS+ EGS LEK V++LKS+VD A IPA KKADIR KIA
Sbjct: 798 TTECAFDALNAASLLEREVEDASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIAS 857
Query: 857 LQNQVRKAQKKVAEENLQXXXXXXXXXXXXXXSNGKPFCISRVEVGLDAAAVREAVLKVI 916
LQN+VRKAQKK+AE+NL+ S+GK FCI +++VGLDAAAVREAV KV+
Sbjct: 858 LQNEVRKAQKKIAEQNLKKSVKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVM 917
Query: 917 EQK 919
E+K
Sbjct: 918 EKK 920
|
|
| SGD|S000005862 ALA1 "Cytoplasmic and mitochondrial alanyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0001447 ALA1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5A8K2 ALA1 "Alanine--tRNA ligase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0277823 alaS "alanine-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC23C11.09 ala1 "mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QLT9 AARS "AARS protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P36428 | SYA_ARATH | 6, ., 1, ., 1, ., 7 | 0.8068 | 0.9348 | 0.8723 | yes | no |
| O13914 | SYA_SCHPO | 6, ., 1, ., 1, ., 7 | 0.5236 | 0.8846 | 0.8633 | yes | no |
| O01541 | SYAC_CAEEL | 6, ., 1, ., 1, ., 7 | 0.5028 | 0.8824 | 0.8533 | yes | no |
| Q8CFX8 | SYAC_MESAU | 6, ., 1, ., 1, ., 7 | 0.5119 | 0.9006 | 0.8708 | N/A | no |
| B2UKT4 | SYA_AKKM8 | 6, ., 1, ., 1, ., 7 | 0.4240 | 0.8301 | 0.8248 | yes | no |
| A4SGJ6 | SYA_PROVI | 6, ., 1, ., 1, ., 7 | 0.4237 | 0.8194 | 0.8666 | yes | no |
| Q8BGQ7 | SYAC_MOUSE | 6, ., 1, ., 1, ., 7 | 0.5119 | 0.9006 | 0.8708 | yes | no |
| A1BD33 | SYA_CHLPD | 6, ., 1, ., 1, ., 7 | 0.4248 | 0.8322 | 0.8772 | yes | no |
| Q5A8K2 | SYA_CANAL | 6, ., 1, ., 1, ., 7 | 0.5123 | 0.9358 | 0.9040 | N/A | no |
| Q9VLM8 | SYAC_DROME | 6, ., 1, ., 1, ., 7 | 0.4987 | 0.8365 | 0.8105 | yes | no |
| Q54Y20 | SYAC_DICDI | 6, ., 1, ., 1, ., 7 | 0.5261 | 0.9102 | 0.9006 | yes | no |
| P40825 | SYA_YEAST | 6, ., 1, ., 1, ., 7 | 0.5189 | 0.9369 | 0.8921 | yes | no |
| P50475 | SYAC_RAT | 6, ., 1, ., 1, ., 7 | 0.5119 | 0.9006 | 0.8708 | yes | no |
| Q5RC02 | SYAC_PONAB | 6, ., 1, ., 1, ., 7 | 0.5108 | 0.9006 | 0.8708 | yes | no |
| P21894 | SYAC_BOMMO | 6, ., 1, ., 1, ., 7 | 0.5057 | 0.8803 | 0.8521 | N/A | no |
| Q3ATN3 | SYA_CHLCH | 6, ., 1, ., 1, ., 7 | 0.4243 | 0.8002 | 0.8453 | yes | no |
| Q8KG04 | SYA_CHLTE | 6, ., 1, ., 1, ., 7 | 0.4241 | 0.8322 | 0.8802 | yes | no |
| Q5AQL1 | SYA_EMENI | 6, ., 1, ., 1, ., 7 | 0.5005 | 0.9123 | 0.8886 | yes | no |
| P49588 | SYAC_HUMAN | 6, ., 1, ., 1, ., 7 | 0.5108 | 0.9006 | 0.8708 | yes | no |
| Q6LMU3 | SYA_PHOPR | 6, ., 1, ., 1, ., 7 | 0.4130 | 0.8269 | 0.8865 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.7 | 0.979 |
| 3rd Layer | 6.1.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
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 | GSVIVG00013953001 | SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (963 aa) | |||||||||
(Vitis vinifera) | |||||||||||
 | GSVIVG00022843001 | • | • | 0.866 | |||||||
 | GSVIVG00006883001 | • | • | 0.851 | |||||||
 | GSVIVG00001918001 | • | • | 0.815 | |||||||
 | GSVIVG00016648001 | • | • | 0.803 | |||||||
 | GSVIVG00036298001 | • | • | 0.779 | |||||||
 | GSVIVG00017986001 | • | 0.749 | ||||||||
 | GSVIVG00038605001 | • | • | • | • | 0.709 | |||||
 | GSVIVG00020546001 | • | • | 0.704 | |||||||
 | rpoC2 | • | 0.702 | ||||||||
 | GSVIVG00023243001 | • | • | • | 0.698 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 936 | |||
| PLN02900 | 936 | PLN02900, PLN02900, alanyl-tRNA synthetase | 0.0 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.0 | |
| COG0013 | 879 | COG0013, AlaS, Alanyl-tRNA synthetase [Translation | 0.0 | |
| pfam01411 | 551 | pfam01411, tRNA-synt_2c, tRNA synthetases class II | 0.0 | |
| TIGR00344 | 851 | TIGR00344, alaS, alanine--tRNA ligase | 0.0 | |
| cd00673 | 232 | cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS | 1e-132 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-119 | |
| PRK13902 | 900 | PRK13902, alaS, alanyl-tRNA synthetase; Provisiona | 4e-85 | |
| TIGR03683 | 902 | TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | 5e-81 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-33 | |
| COG2872 | 241 | COG2872, COG2872, Predicted metal-dependent hydrol | 1e-27 | |
| smart00863 | 43 | smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn | 1e-12 | |
| PLN02961 | 223 | PLN02961, PLN02961, alanine-tRNA ligase | 1e-12 | |
| pfam07973 | 44 | pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt | 2e-12 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 3e-05 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 2e-04 |
| >gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 1569 bits (4065), Expect = 0.0
Identities = 606/876 (69%), Positives = 690/876 (78%), Gaps = 23/876 (2%)
Query: 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL 107
MP D EWP ++R TF FFE K H SSP+VPV+DPTLLF NAGMNQ+KPIFL
Sbjct: 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFL 60
Query: 108 GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEA 167
GTADPNT L KL RA NTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK EA
Sbjct: 61 GTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEA 120
Query: 168 IEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNF 227
I WAWELLTKVY LPADRLYATYFGGDEK APD+EAR IWL +LP RVLPFGCKDNF
Sbjct: 121 IGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDYLPEERVLPFGCKDNF 178
Query: 228 WEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
WEMGDTGPCGPCSEIHYDR G RDAA LVNNDDP IEIWN+VFIQFNRE+DGSLKPLPA
Sbjct: 179 WEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238
Query: 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAY 347
KHVDTG+G ERL SILQNK SNYDTD+FMPIFDAIQ+ATGARPY+GKVGA+D D+VDMAY
Sbjct: 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAY 298
Query: 348 RVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK 407
RVVADHIRTLSFAIADG P NEGR YVLRR+LRRAVRYG +L A++GFF LV +VV+
Sbjct: 299 RVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVE 358
Query: 408 VMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFI 464
+ GDVFPE+K+ E I EIIA EE SFGKTL KGIEKFKKA + G VLSG+DAF+
Sbjct: 359 LSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFL 418
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
L+DTYGFP+DLT+LMAEERG+ VD+EGF AM+EARERSR+A K GGAI + A+AT+
Sbjct: 419 LYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
L K+GV ATDD K+ W DH++V+KAI TG F+ESV G+EVGIVL +SFYAE GGQ
Sbjct: 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQ 538
Query: 585 IFDEGFIEGLFG-SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAP 643
I D G +EG G V +VQ GGFV+HIG++TE G SVG+ V CKVDYDRR+ IAP
Sbjct: 539 IGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAP 596
Query: 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKA 703
NHT TH+LN AL+EVLGDHVDQKGS+V EKLRFDFSHGKP+ PE LR +ES+VNE I
Sbjct: 597 NHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGD 656
Query: 704 ELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEL 763
L V +KE LA+AK INGLRAVFGE YPDPVRVV++G S EL
Sbjct: 657 ALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV---------------YSMEL 701
Query: 764 CGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEG 823
CGGTH+SNT EAEAF LLSEEGIAKGIRRITAVT G A +A AA SLE+E+D A K+EG
Sbjct: 702 CGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEG 761
Query: 824 SLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATET 883
S LEK VASLKS+VD A IPA KK +IRA+++ LQ ++R AQK+ A + AV ATE
Sbjct: 762 SDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATEL 821
Query: 884 AEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK 919
A A S GK ++R++VG+DAAA++EA KVI +
Sbjct: 822 ASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKL 857
|
Length = 936 |
| >gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) | Back alignment and domain information |
|---|
| >gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 936 | |||
| PLN02900 | 936 | alanyl-tRNA synthetase | 100.0 | |
| KOG0188 | 895 | consensus Alanyl-tRNA synthetase [Translation, rib | 100.0 | |
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 100.0 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 100.0 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 100.0 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 100.0 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 100.0 | |
| cd00673 | 232 | AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II | 100.0 | |
| PLN02961 | 223 | alanine-tRNA ligase | 100.0 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to al | 100.0 | |
| KOG2105 | 415 | consensus Predicted metal-dependent hydrolase, con | 100.0 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 99.81 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 99.8 | |
| PLN02837 | 614 | threonine-tRNA ligase | 99.8 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 99.79 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 99.68 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 99.68 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 99.37 | |
| PF07973 | 44 | tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco | 99.34 | |
| smart00863 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase secon | 99.03 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 96.62 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 95.99 | |
| KOG1637 | 560 | consensus Threonyl-tRNA synthetase [Translation, r | 95.45 | |
| PRK09348 | 283 | glyQ glycyl-tRNA synthetase subunit alpha; Validat | 94.27 | |
| TIGR00388 | 293 | glyQ glycyl-tRNA synthetase, tetrameric type, alph | 93.83 | |
| PRK14908 | 1000 | glycyl-tRNA synthetase; Provisional | 91.57 | |
| cd00733 | 279 | GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( | 91.03 | |
| COG0752 | 298 | GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl | 90.83 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 89.3 | |
| PF02091 | 284 | tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit | 81.48 |
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-244 Score=2194.19 Aligned_cols=852 Identities=71% Similarity=1.106 Sum_probs=790.7
Q ss_pred ccCCCCcCcCCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCccccccccccccc
Q 002324 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (936)
Q Consensus 48 ~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~Qk 127 (936)
||+.+.-.++||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|++++++|+|+|||||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 78888888899999999999999999999999999999999999999999999999999999999887788999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 002324 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (936)
Q Consensus 128 CiR~gGKhNDld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~ 207 (936)
|||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||+||+++ |+|+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 99999999
Q ss_pred HHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCC
Q 002324 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (936)
Q Consensus 208 iW~~~v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~ 287 (936)
||+++||++||+++|.+||||+||+||||||||||||||++++++.++++.||+|||||||||||||||++||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998877766678899999999999999999999999999999
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhhheeecCCCcc
Q 002324 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (936)
Q Consensus 288 ~~IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~~y~g~~~~~~~~~~d~a~rvIaDH~R~~~f~iaDG~~P 367 (936)
||||||||||||||||||++||||||+|.|||+.|++++|+++|+|....++.+..++||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998889876543332456799999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhhCCCccchhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002324 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (936)
Q Consensus 368 sN~GrGYvLRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~ 447 (936)
||+|||||||||||||+|||+.+||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999544899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChhhhhheeccCCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchHHHHH
Q 002324 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (936)
Q Consensus 448 ~~~~~~---~~~l~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~ 524 (936)
++++++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++......+..+...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998765 36899999999999999999999999999999999999999999999999876532221111223233344
Q ss_pred HhhcCCCCcccccCccccee-eeEEEEEEEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccc-eEEEEE
Q 002324 525 LHKRGVLATDDSFKFIWFQD-HKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRN 602 (936)
Q Consensus 525 l~~~~~~~t~~~~~Y~y~~~-~~a~Vl~i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~-~~~V~d 602 (936)
+.....+++.+|.||+ ..+ ++|+|++++.+++.|+++..++.+.|+||+|+|||||||||+|+|+|..+++ .+.|.+
T Consensus 479 ~~~~~~~~~t~f~gY~-~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~d 557 (936)
T PLN02900 479 LQKQGVAATDDFLKYD-WLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSD 557 (936)
T ss_pred HHhccCCCCCcccccc-cCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEE
Confidence 4332223333599999 455 8999999998888899998888899999999999999999999999986665 799999
Q ss_pred EEEeCCEEEEEEEeecCCcccCCCCEEEEEEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCC
Q 002324 603 VQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHG 682 (936)
Q Consensus 603 v~k~~g~i~H~~~~~~~~g~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~ 682 (936)
|++.+|.|+|++.+.. +.+.+|++|.++|||+||+++|++|||+|||++||+++||.|+.|.|++++++++||||+++
T Consensus 558 v~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~ 635 (936)
T PLN02900 558 VQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHG 635 (936)
T ss_pred EEEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCC
Confidence 9999999999987654 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCCcccce-ee
Q 002324 683 KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SA 761 (936)
Q Consensus 683 ~~ls~eeL~~IE~~vNeiI~~nlpV~~~~~~~eEA~~~~g~~alfgE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~-sv 761 (936)
+++|++++.+||+.||++|++|+||++.+++++||+++.|++++|+++|++.||||+|+ ++ |.
T Consensus 636 ~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~ 699 (936)
T PLN02900 636 KPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSM 699 (936)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Cccce
Confidence 99999999999999999999999999999999999997799999999999999999998 56 99
Q ss_pred eeccCcccccccccccEEEEeEeeccCCceEEEEEeChhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHhhhccCC
Q 002324 762 ELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAA 841 (936)
Q Consensus 762 elCgGTHV~nTgeIg~fkI~s~ssi~kGvrRIeavtG~~A~~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~l~~~l~~~~ 841 (936)
++||||||+|||+||.|+|++++++++|++||+|+||.+|++++++..+++++++.++++...++.+.|.+|..+|+.+.
T Consensus 700 elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 779 (936)
T PLN02900 700 ELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAV 779 (936)
T ss_pred eCCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEEccCCCCHHHHHHHHHHHHhhhh
Q 002324 842 IPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKV 920 (936)
Q Consensus 842 ip~~~~~~l~~~l~~l~~~~~~~~k~~~~l~~~~a~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~~~d~l~~k~~ 920 (936)
||+++++++.+++++|++++++++|++++++.+++...++++++++...+.++++..++.+.++++||++++.++++.+
T Consensus 780 ~~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~la~~l~~~~~ 858 (936)
T PLN02900 780 IPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLG 858 (936)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEecCCCCHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998876654446777777656899999999999998864
|
|
| >KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PLN02961 alanine-tRNA ligase | Back alignment and domain information |
|---|
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer | Back alignment and domain information |
|---|
| >smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit | Back alignment and domain information |
|---|
| >PRK14908 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
|---|
| >COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 936 | ||||
| 3htz_A | 464 | Crystal Structure Of The Catalytic Fragment Of Alan | 1e-110 | ||
| 1yfr_A | 465 | Crystal Structure Of Alanyl-Trna Synthetase In Comp | 1e-110 | ||
| 3hxu_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-108 | ||
| 3hxz_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-108 | ||
| 1riq_A | 465 | The Crystal Structure Of The Catalytic Fragment Of | 3e-99 | ||
| 2zzf_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 9e-43 | ||
| 2zze_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 1e-32 | ||
| 2ztg_A | 739 | Crystal Structure Of Archaeoglobus Fulgidus Alanyl- | 1e-26 | ||
| 2e1b_A | 216 | Crystal Structure Of The Alax-M Trans-Editing Enzym | 1e-07 |
| >pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 | Back alignment and structure |
|
| >pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 | Back alignment and structure |
| >pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 | Back alignment and structure |
| >pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 | Back alignment and structure |
| >pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 | Back alignment and structure |
| >pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 | Back alignment and structure |
| >pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 | Back alignment and structure |
|---|
Score = 717 bits (1853), Expect = 0.0
Identities = 165/773 (21%), Positives = 280/773 (36%), Gaps = 139/773 (17%)
Query: 63 VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTR 121
+R+ + FFE + H + PVV + A + ++P G A P
Sbjct: 65 MREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPP-----PANP 119
Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLT 176
+Q CIR +DLD VG+ H T FEM+ + +F Y+KNE + + ELL
Sbjct: 120 LTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN 175
Query: 177 KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPC 236
++ + + + K+ W G G
Sbjct: 176 ELG-VKKEDIVY-----------------------------------KEEPWAGG--GNA 197
Query: 237 GPCSEIHYDRTG---------NRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
GPC E + ++ N +
Sbjct: 198 GPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGT 257
Query: 288 KHVDTGLGFERLTSILQ--NKMSNYDTDVFMPIFDAIQQATG------------------ 327
V + E + +I+ N N + + I + G
Sbjct: 258 PTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVA 317
Query: 328 ARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYG 387
+ +ADH R + F + DG P N G Y+ R ++RR++R
Sbjct: 318 DTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA 377
Query: 388 SEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447
E L+ LV + K++G F + ++EI+ E+ + T+ KG ++
Sbjct: 378 EE-LEL-GLDLYDLVEMHKKILGFEFDVPL---STVQEILELEKERYRTTVSKGTRLVER 432
Query: 448 AAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSA 506
+ K L D L+D++G P++L +A E+G V++ + + ++
Sbjct: 433 LVER--KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKV 490
Query: 507 QNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGN 566
Q K + + AT + +++ D T EF V+
Sbjct: 491 QEK--KITLQNEYPAT---------------EKLYYDD--------PTLLEFEAEVIGVE 525
Query: 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVG 626
++L S+FY E GGQ D G++ G F V +V G V+H+ + VG
Sbjct: 526 GDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK----GAKPEVG 581
Query: 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVD 686
+V +D D R +H+ TH+L ++L++VLG+HV Q G+ K R D +H +
Sbjct: 582 TKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPS 641
Query: 687 PEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKV 744
E ++ IE + N +I A + + EA+ G ++ G +RVV +G
Sbjct: 642 EEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGF-RLYQGGVPPGRKIRVVQVG--- 697
Query: 745 EDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVT 797
+ CGGTH +T E +L E I G+ R
Sbjct: 698 --------------DDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAA 736
|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 | Back alignment and structure |
|---|
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 936 | |||
| 2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 100.0 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 100.0 | |
| 3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 1yfs_A | 465 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loo | 100.0 | |
| 3kew_A | 241 | DHHA1 domain protein; structural genomics, PSI-2, | 100.0 | |
| 2e1b_A | 216 | PH0108, 216AA long hypothetical alanyl-tRNA synthe | 100.0 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.94 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 99.93 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.89 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.88 | |
| 2zvf_A | 171 | Alanyl-tRNA synthetase; C-terminal, oligomerizatio | 98.53 | |
| 3rf1_A | 311 | Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA | 95.24 | |
| 1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural gen | 83.6 |
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-201 Score=1773.57 Aligned_cols=634 Identities=28% Similarity=0.449 Sum_probs=577.1
Q ss_pred CcCCChhHHHHHHHHhhhcCC---CeeecCCCcccCCCCCcceecccccccccccc-CCCCCCCcccccccccccccccc
Q 002324 55 VVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIR 130 (936)
Q Consensus 55 ~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp~~DptllFtnAGM~qFK~~fl-G~~~p~~~~~~~~r~~~~QkCiR 130 (936)
.++||++|||++||+||++|| |++||||||||+|||||||||||||||||||+ |+++|| ++|+||||||||
T Consensus 54 ~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkCiR 128 (752)
T 2zze_A 54 PRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPSIR 128 (752)
T ss_dssp SSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCcccccccee
Confidence 367999999999999999999 99999999999999999999999999999997 999987 479999999999
Q ss_pred cCCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHH
Q 002324 131 AGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEA 205 (936)
Q Consensus 131 ~gGKhNDld~VG~t~rHhTfFEMLGnfSFG-----dYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea 205 (936)
+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 129 ~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~--------------- 187 (752)
T 2zze_A 129 F----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F--------------- 187 (752)
T ss_dssp C----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E---------------
T ss_pred c----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e---------------
Confidence 6 7999999999999999999999999 999999999999999999999999993 2
Q ss_pred HHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeccccc-----------
Q 002324 206 RDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF----------- 274 (936)
Q Consensus 206 ~~iW~~~v~~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~----------- 274 (936)
+||||+|| |||||||||||| .|||||||||||
T Consensus 188 ------------------~dNfW~~G--GpcGPcsEI~~d-----------------glEiwNlVFmq~~~~~~~~~~~~ 230 (752)
T 2zze_A 188 ------------------KENPWAGG--GNAGPAFEVLYR-----------------GLEVATLVFMQYXXAPENAPQDQ 230 (752)
T ss_dssp ------------------EECCEEET--TEEECEEEEEET-----------------TEEEEEEEEEEEEECCTTCCSCC
T ss_pred ------------------ccCcccCC--CCCCCceeEEEC-----------------CEeeeeeeeeeeccccccccccc
Confidence 68999999 999999999997 199999999999
Q ss_pred --ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCccc
Q 002324 275 --NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDAD 341 (936)
Q Consensus 275 --~r~~~g~l~~Lp~~~IDTGmGLERl~~vlqg~~snydtDlF~pii~~i~~~~~~~-----------~y~g~~~~~~~~ 341 (936)
|| ++|+|+|||+||||||||||||||||||++||||| +|.|||++|++++|++ +|+|.++.++..
T Consensus 231 ~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~~ 308 (752)
T 2zze_A 231 VVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLG 308 (752)
T ss_dssp EEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSSS
T ss_pred hhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccchh
Confidence 88 69999999999999999999999999999999999 9999999999999985 133444422211
Q ss_pred cc------------------------cchhhhhhhhhhhhheeecCCCccCCCCCchHHHHHHHHHHHHHHhhhCCCccc
Q 002324 342 KV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGF 397 (936)
Q Consensus 342 ~~------------------------d~a~rvIaDH~R~~~f~iaDG~~PsN~GrGYvLRrilRRa~r~~~~~lg~~~~f 397 (936)
.+ +.++||||||+||++|||+||++|||+|||||||||||||+||| ++||++.|
T Consensus 309 ~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~-~~lg~~~~- 386 (752)
T 2zze_A 309 DLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHL-RELGLEVP- 386 (752)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHH-HHTTCCCC-
T ss_pred hHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHH-HHhCCCcc-
Confidence 11 46889999999999999999999999999999999999999999 57999999
Q ss_pred hhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChhhhhheeccCCCChh
Q 002324 398 FNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPLD 474 (936)
Q Consensus 398 l~~lv~~v~~~m~~~ypel~~~~~~I~~vi~~Ee~~F~~tl~~g~~~l~~~~~~~~---~~~l~g~~af~LydTyGfP~d 474 (936)
|++|||.|++.|+++||||.++++.|++||+.||++|.+||++|+++|++++++++ +++|||++||+||||||||+|
T Consensus 387 l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~d 466 (752)
T 2zze_A 387 LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPE 466 (752)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHH
T ss_pred hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCHH
Confidence 99999999999999999999999999999999999999999999999999998864 257999999999999999999
Q ss_pred hHHHHHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCcccccCcc--cceeeeEEEEE
Q 002324 475 LTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKA 551 (936)
Q Consensus 475 lt~~~a~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~Y~--y~~~~~a~Vl~ 551 (936)
||++||+|+|++||++ +|+++|++||+++|++.. ... .+ ...+. ..++|+ +.+|+ |.++++|+|++
T Consensus 467 lt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~-~~~----~~---~~~~~--~~~~T~-~l~Y~~~yl~~~~a~Vl~ 535 (752)
T 2zze_A 467 IVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG-EEL----VD---FELLK--DLPDTR-RLYYEDPFMXEFDAXVLR 535 (752)
T ss_dssp HHHHHHTTSSCCCCCCTTHHHHHHGGGGCC--------C----CC---SSSSS--SSCCCE-EHHHHCTTCCEEEEEEEE
T ss_pred HHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc-ccc----hh---hHHhc--cCCCce-eecccCCccceEEEEEEE
Confidence 9999999999999999 899999999999885421 000 00 01111 245675 88887 23789999999
Q ss_pred EEeCCeeeeeccCCCeEEEEeeceeEEEccCCeeeccceeecccceEEEEEEEEeCCEEEEEEEeecCCcccCCCCEEEE
Q 002324 552 IYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVIC 631 (936)
Q Consensus 552 i~~~~~~v~~~~~~~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~g~l~~G~~V~~ 631 (936)
|.. ..||||+|||||||||||+|+|+|..++..+.|.+|++.+|.++|++.. . +.+++|++|.+
T Consensus 536 i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V~~ 599 (752)
T 2zze_A 536 VIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIVHG 599 (752)
T ss_dssp EET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEEEE
T ss_pred EEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeEEE
Confidence 973 3699999999999999999999997766679999999999999999874 3 77999999999
Q ss_pred EEcHhhhhhHHhhhhHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Q 002324 632 KVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKE 711 (936)
Q Consensus 632 ~VD~erR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~lrfDF~~~~~ls~eeL~~IE~~vNeiI~~nlpV~~~~ 711 (936)
+|||+||+.+|++|||+|||++||+++||.+++|.|+++.++++||||+++.++|++++++||++||++|++|+||++.+
T Consensus 600 ~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~ 679 (752)
T 2zze_A 600 XIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEW 679 (752)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEE
T ss_pred EEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHhhcCccccc--CCcCCCCEEEEEEcccccccccCCCCCcccceeeeeccCcccccccccccEEEEeEeeccCC
Q 002324 712 ATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKG 789 (936)
Q Consensus 712 ~~~eEA~~~~g~~alf--gE~y~d~VRVV~Ig~~~~~ll~~p~~~~~~~~svelCgGTHV~nTgeIg~fkI~s~ssi~kG 789 (936)
++++||+++.+ .++| +++|++.||||+|| ++|+++||||||+|||+||.|+|++++++++|
T Consensus 680 ~s~eEA~~~~~-~~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s~i~~G 742 (752)
T 2zze_A 680 LPRTTAEQXYG-FRLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTERIQDG 742 (752)
T ss_dssp EEHHHHHHHHC-GGGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEEEEETT
T ss_pred cCHHHHhhcch-hhhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEEEEcCC
Confidence 99999999744 4666 77899999999998 68999999999999999999999999999999
Q ss_pred ceEEEEEeCh
Q 002324 790 IRRITAVTTG 799 (936)
Q Consensus 790 vrRIeavtG~ 799 (936)
+|||+|+||.
T Consensus 743 vrRIeavtG~ 752 (752)
T 2zze_A 743 VERIIFACGE 752 (752)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEeCC
Confidence 9999999994
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
|---|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* | Back alignment and structure |
|---|
| >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 936 | ||||
| d1riqa2 | 236 | d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) | 8e-91 | |
| d1riqa1 | 221 | a.203.1.1 (A:237-457) Putative anticodon-binding d | 2e-45 | |
| d2e1ba2 | 129 | d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C | 1e-26 | |
| d1v4pa_ | 151 | d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo | 2e-23 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 4e-13 | |
| d2e1ba1 | 87 | b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t | 3e-12 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 3e-12 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Score = 286 bits (732), Expect = 8e-91
Identities = 124/253 (49%), Positives = 163/253 (64%), Gaps = 22/253 (8%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
A ++R+ F FFE K H KS+P+VP NDPTLLF NAGM +K +FLG
Sbjct: 4 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY----- 58
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V
Sbjct: 59 KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVL 118
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
+LP ++LY + + D EA IW + +P+ R+ G +DNFW+MGD GPCG
Sbjct: 119 KLPKEKLYVSVYKDD--------EEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCG 170
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
P SEI+ DR D +EIWN+VF+Q+NR+ +G L PLP ++DTG+G E
Sbjct: 171 PSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223
Query: 298 RLTSILQNKMSNY 310
R+ S+LQ K SN+
Sbjct: 224 RIASVLQGKNSNF 236
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 936 | |||
| d1riqa2 | 236 | Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ | 100.0 | |
| d1riqa1 | 221 | Putative anticodon-binding domain of alanyl-tRNA s | 100.0 | |
| d2e1ba2 | 129 | AlaX-M trans-editing enzyme, C-terminal domain {Py | 99.97 | |
| d1v4pa_ | 151 | Hypothetical protein PH0574 {Archaeon Pyrococcus h | 99.96 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.94 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.84 | |
| d2e1ba1 | 87 | AlaX-M trans-editing enzyme, N-terminal domain {Py | 99.5 | |
| d1j5wa_ | 281 | Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo | 93.33 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=1.3e-112 Score=884.57 Aligned_cols=234 Identities=53% Similarity=1.009 Sum_probs=226.0
Q ss_pred CCChhHHHHHHHHhhhcCCCeeecCCCcccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCC
Q 002324 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (936)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~DptllFtnAGM~qFK~~flG~~~p~~~~~~~~r~~~~QkCiR~gGKhN 136 (936)
.||++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++|+ ++|+|++|||||+|||||
T Consensus 1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~-----~~r~~~~QkCiR~~gk~n 75 (236)
T d1riqa2 1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHN 75 (236)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCS-----CSEEEEEEEEECEETTEE
T ss_pred CCCHHHHHHHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccC-----CCccccccccccccCccc
Confidence 489999999999999999999999999999999999999999999999999999987 489999999999999999
Q ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CC
Q 002324 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (936)
Q Consensus 137 Dld~VG~t~rHhTfFEMLGnfSFGdYfK~eAI~~awe~Lt~~l~l~~~rL~vTv~~~d~~~~~~~D~Ea~~iW~~~--v~ 214 (936)
||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||+ .|+||+++|.+. +|
T Consensus 76 Dld~VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~--------~D~e~~~~w~~~~gi~ 147 (236)
T d1riqa2 76 DLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYK--------DDEEAYRIWNEHIGIP 147 (236)
T ss_dssp CTTTTTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEET--------TCHHHHHHHHTTTCCC
T ss_pred hhhhcCCcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCccceEEEeec--------CcHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999998 489999999987 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCc
Q 002324 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGL 294 (936)
Q Consensus 215 ~~rI~~~g~~dNfW~mG~~GPCGPCsEI~yD~~~~~~~~~~~~~~~~~~lEiWNlVFmq~~r~~~g~l~~Lp~~~IDTGm 294 (936)
++||+++|.+||||+||++||||||||||||+++.. ++++|||||||+|||||+|+++|++.|||+|+|||||
T Consensus 148 ~~rI~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~~-------~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGm 220 (236)
T d1riqa2 148 SERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEY-------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGM 220 (236)
T ss_dssp GGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTS-------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred cccceecCCCCCccccCCCCCCCcceeEEEcccccc-------CCCCceeeeeeeeheeeeecCCCccccCCCCcccCCc
Confidence 999999999999999999999999999999987542 4568999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCc
Q 002324 295 GFERLTSILQNKMSNY 310 (936)
Q Consensus 295 GLERl~~vlqg~~sny 310 (936)
|||||||||||++|||
T Consensus 221 GLERi~~vlqg~~s~y 236 (236)
T d1riqa2 221 GLERIASVLQGKNSNF 236 (236)
T ss_dssp EHHHHHHHHTTCSSGG
T ss_pred cHHHHHHHHcCCCCCC
Confidence 9999999999999998
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|