Citrus Sinensis ID: 002329

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930------

MESVHLGYDTNSGEETSLKQLVPSDSVDINDLFGDRQVNPRIGDEFQVEIPPMITGSEYIQLLMNPTDSEYIFHASHSFLMGLAIPIMWLHNELNNPDESVKYTKRKKIRTNTGKKSSEPNFSELNDGEEMKPKNREAKVAGMTNLDQLSKCTSCSPVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCRKPRSRKCVYGRKIFSGWRQQELVSRLLPHIPEESHNSLLEVSKSFAEGRTSLESYVFSLQAAVGVHALVESVGIGKGKEDLTSLTIEPVKTNPVSSVFPTMPSGKACSSLTSTDIIKFLTGDFRLSKARCNDIFWEAVWPRLLARGWRSEQPRDEGYVSSKDCLVFLMPGVKKFSRRKLVKGDHYFDSVSDILKKVASEPKLLELEAEEPRVSRCNEEDQWVLEELSDQDNSSNHRPHCYLKPLTSNYKLERMKFMIVDSSLVQGAKSSKARELRYLPVHFNDTYKLSCLLRTDEGFELDAANMPLKEEKNIGTEKHSKDNFYDGGAKNMKFLVVDTSLVNQGKSWKVRTLRNCPVESKIASDISFLSRVDKGKSFSNSLNESESNVADTTLSSEPDVVDGAVSNKKALNSDSGNNVDMHPHQRASNSEDRKPSDRVIKLHFSRRAKSDSTGNLAPLVKRRRLTACAKAESCIIGYFQPGHESKEVGPCSALDLPDVGYNDISQVGTSLEKISPLSRYSEGSPEEEVSRSMMSGSCFSKKKSHGKNEKHQILSSIDLNVSKIPSNSDNGEELMMDVEGSQGMNSNGSLVTKRELNLDAVNSSDDVSTAAQQPNMNPRRQSTRIRPLTAKALEALACGFLNVKKKQKSKDFSTREITFSNPSRKARSKLKPSSKRGTAGTVFVDLKLEKELKKTSIVSKDIVGRPIDQNEEESLNG

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHcccccEEEccccccccccccHHcccc

cccEEEcccccccccccHHHcccccccccccccccccccccccccHEEEccccccHHHHHHcccccccccEEccccccEEEcccEEEEEEccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHccccccccEEEEEcccccccHHHHcHHHHHHHHcccEEEcHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHEccccccccccccEcccccccEEccccccccccccccccHHHHHHHHcccccccHcccccHHHHHHHHHHHHccccccccccccccccccEEEEEEccccEccHHHHcccccccccHHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccccccccEccccccccccccEEEEEEEccccccccccHHHHHHcccccccccccccccccccccccEcccccccccccccccccccccccccccccccEEEEEEccccccccccccEHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHccccHEccccccccEEcccccccccccccccccccccccHHHHcccccccHHcccccHHccccccccccccccccccccEcccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHccccccccccccccccEEEccccccccccEEEEEccccccccccccccccc

mesvhlgydtnsgeetslkqlvpsdsvdindlfgdrqvnprigdefqveippmitgsEYIQLLmnptdseyifhASHSFLMGLAIPIMWlhnelnnpdesvkytkrkkirtntgkkssepnfselndgeemkpknreakvagmtnldqlskctscspvpgflrdpwkdsekDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYgefyrspahrrwtdcrkprsrkcvygrkifsgWRQQELVSrllphipeeshnSLLEVSKSFAEGRTSLESYVFSLQAAVGVHALVESvgigkgkedltsltiepvktnpvssvfptmpsgkacssltsTDIIKFLTgdfrlskarcndIFWEAVWPRLLargwrseqprdegyvsskDCLVFLMpgvkkfsrrklvkgdhyfDSVSDILKKVasepklleleaeeprvsrcneeDQWVLEElsdqdnssnhrphcylkpltsnykleRMKFMIVDSSlvqgaksskarelrylpvhfndtyklscllrtdegfeldaanmplkeeknigtekhskdnfydggaknMKFLVVDTSLvnqgkswkvrtlrncpveskiasdisflsrvdkgksfsnslnesesnvadttlssepdvvdgavsnkkalnsdsgnnvdmhphqrasnsedrkpsdrVIKLHFsrraksdstgnlaplVKRRRLTACAKAESCiigyfqpgheskevgpcsaldlpdvgyndisqvgtslekisplsrysegspeeevsrsmmsgscfskkkshgknekhqILSSidlnvskipsnsdngeELMMDVegsqgmnsngslvtkrelnldavnssddvstaaqqpnmnprrqstrirpLTAKALEALACGflnvkkkqkskdfstreitfsnpsrkarsklkpsskrgtagtVFVDLKLEKELKKTSIVskdivgrpidqneeeslng

mesvhlgydtnsgeetslkqlvpsdsVDINDLFGDRQVNPRIGDEFQVEIPPMITGSEYIQLLMNPTDSEYIFHASHSFLMGLAIPIMWLHNELNNpdesvkytkrkkirtntgkkssepnfselndgeemkpkNREAKVAGMTNLDQLSKCTSCSPVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYGefyrspahrrwtdcrkprsrkcvygrkifsgwrQQELVSRLLPHIPEESHNSLLEVSKSFAEGRTSLESYVFSLQAAVGVHALVESVGigkgkedltsltiepvktnpvssvfptmpsGKACSSLTSTDIIKFLTGDFRLSKARCNDIFWEAVWPRLlargwrseqprdegyvsskdCLVFLMPGVKkfsrrklvkgdhyfdSVSDILKkvasepklleleaeeprvsrcNEEDQWVLEElsdqdnssnhrphCYLKPLTSNYKLERMKFMIVDSSLvqgaksskarelrylpvhfndtyKLSCLLRTDEGFELDaanmplkeeknigtekhskDNFYDGGAKNMKFLVVDTSlvnqgkswkvrtlrncpveskiasdisflsrVDKGKSFsnslnesesnvadttlssepdvvdGAVSNKKalnsdsgnnvdmhphqrasnsedrkpsDRVIKLhfsrraksdstgnlaplvkRRRLTACAKAESCIIGYFQPGHESKEVGPCSALDLPDVGYNDISQVgtslekisplsrysEGSPEEEVSRSMMSGSCFSkkkshgknekhqilssidlnvskIPSNSDNGEELMMDVEGSQGMNSNGSLVTKRELNLDAVNSSDdvstaaqqpnmnprrqstriRPLTAKALEALAcgflnvkkkqkskdfstreitfsnpsrkarsklkpsskrgtagtvfvdlklekelkktsivskdivgrpidqneeeslng

MESVHLGYDTNSGEETSLKQLVPSDSVDINDLFGDRQVNPRIGDEFQVEIPPMITGSEYIQLLMNPTDSEYIFHASHSFLMGLAIPIMWLHNELNNPDESVKYTKRKKIRTNTGKKSSEPNFSELNDGEEMKPKNREAKVAGMTNLDQLSKCTSCSPVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCRKPRSRKCVYGRKIFSGWRQQELVSRLLPHIPEESHNSLLEVSKSFAEGRTSLESYVFSLQAAVGVHALVESVGIGKGKEDLTSLTIEPVKTNPVSSVFPTMPSGKACSSLTSTDIIKFLTGDFRLSKARCNDIFWEAVWPRLLARGWRSEQPRDEGYVSSKDCLVFLMPGVKKFSRRKLVKGDHYFDSVSDILKKVASEPKlleleaeePRVSRCNEEDQWVLEELSDQDNSSNHRPHCYLKPLTSNYKLERMKFMIVDSSLVQGAKSSKARELRYLPVHFNDTYKLSCLLRTDEGFELDAANMPLKEEKNIGTEKHSKDNFYDGGAKNMKFLVVDTSLVNQGKSWKVRTLRNCPVESKIASDISFLSRVDKGKsfsnslnesesnVADTTLSSEPDVVDGAVSNKKALNSDSGNNVDMHPHQRASNSEDRKPSDRVIKLHFSRRAKSDSTGNLAPLVKRRRLTACAKAESCIIGYFQPGHESKEVGPCSALDLPDVGYNDISQVGTSLEKISPLSRYSEGSPEEEVSRSMMSGSCFSKKKSHGKNEKHQILSSIDLNVSKIPSNSDNGEELMMDVEGSQGMNSNGSLVTKRELNLDAVNSSDDVSTAAQQPNMNPRRQSTRIRPLTAKALEALACGFLNVKKKQKSKDFSTREITFSNPSRKARSKLKPSSKRGTAGTVFVDLKLEKELKKTSIVSKDIVGRPIDQNEEESLNG

***************************DINDLFGDRQVNPRIGDEFQVEIPPMITGSEYIQLLMNPTDSEYIFHASHSFLMGLAIPIMWLHNEL********************************************************KCTSCSPVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCRKPRSRKCVYGRKIFSGWRQQELVSRLLPHI**************FAEGRTSLESYVFSLQAAVGVHALVESVGIGKGKEDLTSLTIEPV****************ACSSLTSTDIIKFLTGDFRLSKARCNDIFWEAVWPRLLARGWRSEQPRDEGYVSSKDCLVFLMPGVKKFSRRKLVKGDHYFDSVSDILKKV*****************************************HCYLKPLTSNYKLERMKFMIVDSSLVQGAK**KARELRYLPVHFNDTYKLSCLLRTDEGFELD*********************FYDGGAKNMKFLVVDTSLVNQGKSWKVRTLRNCPVESKIASDISFL***************************************************************************************APLVKRRRLTACAKAESCIIGYFQPGHESKEVGPCSALDLPDVGYNDIS***************************************************************************************************************************TAKALEALACGFLNV*************************************TVFVDLKLE****************************

*******************************LFGDRQVNPRIGDEFQVEIPPMITGSEYIQLLM*PTDSEYIFHASHSFLMGLAIPIMWLHNEL************************************************************CSPVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCRKPRSR*CVYGRKIFSGWRQQELVSRLLPHIPEESHNSLLEVSKSFAEGRTSLESYVFSLQAAVGVHALVESVGIGKGKEDLTSLTIEPV***P*SSVFPTMPSGKACSSLTSTDIIKFLTGDFRLSKARCNDIFWEAVWPRLLARGWRSEQP*****VSSKDCLVFLMPGVKKFSRRKLVKGDHYFDSVSDILKKVASEPKLLE**************************************************FMIVDSSL*************YLPVH**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************TAKALEALACG******************************************************************************

***********SGEETSLKQLVPSDSVDINDLFGDRQVNPRIGDEFQVEIPPMITGSEYIQLLMNPTDSEYIFHASHSFLMGLAIPIMWLHNELNNPDESVKYTKR***************FSELNDGEEMKPKNREAKVAGMTNLDQLSKCTSCSPVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCRKPRSRKCVYGRKIFSGWRQQELVSRLLPHIPEESHNSLLEVSKSFAEGRTSLESYVFSLQAAVGVHALVESVGIGKGKEDLTSLTIEPVKTNPVSSVFPTMPSGKACSSLTSTDIIKFLTGDFRLSKARCNDIFWEAVWPRLLARGWRSEQPRDEGYVSSKDCLVFLMPGVKKFSRRKLVKGDHYFDSVSDILKKVASEPKLLELEA*********EEDQWVLEE*********HRPHCYLKPLTSNYKLERMKFMIVDSSLVQGAKSSKARELRYLPVHFNDTYKLSCLLRTDEGFELDAANMPLKEEKNIGTEKHSKDNFYDGGAKNMKFLVVDTSLVNQGKSWKVRTLRNCPVESKIASDISFLSRVDKG*******************SSEPDVVDGAVSNKKALNSDSGNNVDM***************DRVIKLHFSRRAKSDSTGNLAPLVKRRRLTACAKAESCIIGYFQPGHESKEVGPCSALDLPDVGYNDISQVGTSLEKIS***********************************HQILSSIDLNVSKIPSNSDNGEELMMDVEGSQGMNSNGSLVTKRELNLDAV*********************TRIRPLTAKALEALACGFLNVKK**********EITFSN****************TAGTVFVDLKLEKELKKTSIVSKDIVGRPIDQNEEESLNG

*************EETSLKQLVPSDSVDINDLFGDRQVNPRIGDEFQVEIPPMITGSEYIQLLMNPTDSEYIFHASHSFLMGLAIPIMWLHNELNNPDESVKYTKRKKIR***************************************SKCTSCSPVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCRKPRSRKCVYGRKIFSGWRQQELVSRLLPHIPEESHNSLLEVSKSFAEGRTSLESYVFSLQAAVGVHALVESVGIGKGKEDLTSLTIEPVKTNPVSSVFPTMPSGKACSSLTSTDIIKFLTGDFRLSKARCNDIFWEAVWPRLLARGWRSEQPRDEGYVSSKDCLVFLMPGVKKFSRRKLVKGDHYFDSVSDILKKVASEPKLLELEAEEP**************************PHCYLKPLTSNYKLERMKFMIVDSSLVQGAKSSKARELRYLPVHFN********************************************AKNMKFLVVDTSLVN****WKVRT************************************************************************************DRVIK**FSRRAKSDSTGNLAPLVKRRRLTACAKAESCIIGY*****************************************************************************SIDLNVSKIPSNSDNGEELMMDVE***********************************************PLTAKALEALACGFLN***************************************VFVDLKLEKELKKTSIVSKDIV**************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		936	2.2.26 [Sep-21-2011]
Q80TZ9		1558	Arginine-glutamic acid di	yes	no	0.052	0.031	0.42	7e-05
Q62901		1559	Arginine-glutamic acid di	yes	no	0.052	0.031	0.42	0.0001
Q9P2R6		1566	Arginine-glutamic acid di	yes	no	0.052	0.031	0.42	0.0001

>sp\|Q80TZ9\|RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein OS=Mus musculus GN=Rere PE=1 SV=3	Back alignment and function desciption

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 157 PVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQI-KRFIETKEMGDILSFYY 205
           PVP  +   W + E   F+ GL  +GKNFF+I K  + +KE G++++FYY
Sbjct: 387 PVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPSKETGELITFYY 436

Plays a role as a transcriptional repressor during development. May play a role in the control of cell survival.
Mus musculus (taxid: 10090)

>sp\|Q62901\|RERE_RAT Arginine-glutamic acid dipeptide repeats protein OS=Rattus norvegicus GN=Rere PE=2 SV=2	Back alignment and function description

>sp\|Q9P2R6\|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens GN=RERE PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		936
255542688		962	conserved hypothetical protein [Ricinus	0.950	0.925	0.477	0.0
224125226		904	predicted protein [Populus trichocarpa]	0.913	0.945	0.456	0.0
224123534		904	predicted protein [Populus trichocarpa]	0.925	0.957	0.446	0.0
359487613		954	PREDICTED: uncharacterized protein LOC10	0.576	0.566	0.564	1e-174
296089663		755	unnamed protein product [Vitis vinifera]	0.556	0.690	0.568	1e-170
147840233		958	hypothetical protein VITISV_043864 [Viti	0.576	0.563	0.532	1e-170
225432278		894	PREDICTED: uncharacterized protein LOC10	0.883	0.925	0.401	1e-162
296086604		841	unnamed protein product [Vitis vinifera]	0.856	0.953	0.394	1e-158
147783832		885	hypothetical protein VITISV_043429 [Viti	0.847	0.896	0.402	1e-156
297736863		847	unnamed protein product [Vitis vinifera]	0.521	0.576	0.516	1e-141

>gi\|255542688\|ref\|XP_002512407.1\| conserved hypothetical protein [Ricinus communis] gi\|223548368\|gb\|EEF49859.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/944 (47%), Positives = 588/944 (62%), Gaps = 54/944 (5%)

Query: 1   MESVHLGYDTNSGEETSLKQLVPSDSVDINDLFGDRQVNPRIGDEFQVEIPPMITGSEYI 60
           ME +HL     S EE   +QL+   S +I+ + GD QVNPR+GDE+Q EIP MI+ SE  
Sbjct: 10  MEPIHLNNYGTSIEEPIFEQLIHPSS-EISGIAGDPQVNPRVGDEYQAEIPTMISESERS 68

Query: 61  QLLMNPTDSEYIFHASHSFLMGLAIPIMWLHNELNN----------PDESVKYTKRKKIR 110
           +LL+NP DSE +  +SHSFLMGL  P+ W+HN+ N+          P+ S      +K R
Sbjct: 69  RLLVNPYDSEGMVDSSHSFLMGLPFPVAWVHNKTNDEEDKGCRMNIPENSFNANASRKSR 128

Query: 111 TNTGKKSSEPNFSELN----DGEEMKPKNREAKVAGMTNLDQLSKCTSCSPVPGFLRDPW 166
           T+  KK S+ N   L+    DG+E KP N  +KVA   NL QL K  +C  VPG     W
Sbjct: 129 TSMKKKGSKQNADPLDLGLGDGQESKPANLGSKVAVKANLPQLHKNENCDLVPGSFNHSW 188

Query: 167 KDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCRKPRSR 226
            D+E + F+LGLYIFGK+F QIKRF++ KEMGDIL FYYG FY S  + RW+DC+K + +
Sbjct: 189 SDAEVNSFILGLYIFGKSFLQIKRFMDNKEMGDILCFYYGNFYASDVYHRWSDCQKKKRK 248

Query: 227 KCVYGRKIFSGWRQQELVSRLLPHIPEESHNSLLEVSKSFAEGRTSLESYVFSLQAAVGV 286
           KC+YG+K+F+GWRQQEL+SRL  H+PE S ++LLEVS +F+EG+ SLE YVF+L+A+VG+
Sbjct: 249 KCIYGQKLFTGWRQQELLSRLHCHVPEHSQSTLLEVSTAFSEGKLSLEDYVFNLKASVGI 308

Query: 287 HALVESVGIGKGKEDLTSLTIEPVKTNPVSSVFPTMPSGKACSSLTSTDIIKFLTGDFRL 346
            ALV+++GIGKG+EDLTSL +E  K NP+   F   P GKACSSLTS+DIIK LTG FRL
Sbjct: 309 QALVDAIGIGKGREDLTSLAMETGKNNPL---FAGCPIGKACSSLTSSDIIKLLTGGFRL 365

Query: 347 SKARCNDIFWEAVWPRLLARGWRSEQPRDEGYVSSKDCLVFLMPGVKKFSRRKLVKGDHY 406
           SKARCNDIFWEAVWPRLLARGW SEQP+++ Y+ S  CLVFL+PGVKKFS+RKLVKG+HY
Sbjct: 366 SKARCNDIFWEAVWPRLLARGWHSEQPKNQIYMGSSHCLVFLIPGVKKFSKRKLVKGNHY 425

Query: 407 FDSVSDILKKVASEPKLLELEAEEPRVSRCNEEDQWVLEELSDQDNSSNHRPHCYLKPLT 466
           FDSVSD+L KVASEPKL+ELE EE R S  NEED+WV E  SDQD+ S  + H YLKP  
Sbjct: 426 FDSVSDVLSKVASEPKLIELETEEVRGSIYNEEDRWVAEVSSDQDDPSIRQSHRYLKPRV 485

Query: 467 SNYKLERMKFMIVDSSLVQGAKSSKARELRYLP---------VHFNDTYKLSCLLRTDEG 517
           S+  L  ++F IVDS LV G K SK RE+RY P            +   ++  L      
Sbjct: 486 SSCNLNLVRFTIVDSGLVDGGKLSKMREMRYAPDDLKVKSMFTTLSSNIEVILLENLQND 545

Query: 518 FELDAANMPLKEEKNIGTEKHSKDNFYDGGAKNMKFLVVDTSLVNQGKSWKVRTLRNCPV 577
            EL   +  +   KNI   +  K  F   G+ + KF +VDTSL++ GKS  VR LR  PV
Sbjct: 546 NELQVTDNSVDGPKNINKVECCKRIFNGCGSNHTKFTIVDTSLIDLGKSSMVRELRYAPV 605

Query: 578 ESKIASDISFLSRVDKGKSFSNSLNESESNVADTTLSSEP---------DVVDGAVSNKK 628
             K+AS++S  S+ ++G S   SL+ +     +  L+ E          DV+  + S KK
Sbjct: 606 GVKVASEMSKSSKKNEGNSSMESLDWNVPVATNKLLNGEKDACKSDHSEDVIGSSSSEKK 665

Query: 629 ALNSDSGNNVDMHPHQRASNSEDRKPSDRVIKLHFSRRAKSDSTGNLAPLVKRRRLTACA 688
            +N D  N + +   Q  ++   +  S R IK  FSRR KS ++ NL P+VKRRRLTACA
Sbjct: 666 EVNRDFRNKL-VESLQDNNHESAKNQSTRSIKHKFSRRPKSGNSNNLVPVVKRRRLTACA 724

Query: 689 KAE-SCIIGYFQPGHESKEVGPCSALDLPDVGYNDISQVGTSLEKISPLSRYSEGSPEEE 747
             E S +I  F  G  SK+   C  L+    G + +   G + +K+S  +   EG  EE 
Sbjct: 725 NTEISHVIENFSVGLGSKQEESCCPLNSIKEGSSRLQ--GITPQKLSLTTSLVEGCLEE- 781

Query: 748 VSRSMMSGSCFSKKKSHGKNEKHQILSSIDLNVSKIPSNSDNGEELMMDVEGSQGMNSNG 807
            S   M       + SHG N KHQ  S ID N+ ++P  S    E +MD E SQG N   
Sbjct: 782 -SAGSMLDKTLDGEASHGTNAKHQSPSLIDFNLPEVPFYS----EALMDAESSQGSNVK- 835

Query: 808 SLVTKRELNLD-----AVNSSDDVSTAAQQPNMNPRRQSTRIRPLTAKALEALACGFLNV 862
             +T    NLD     A+++S D  TAA++P MNPRRQSTR RPLT +ALEAL CGF+  
Sbjct: 836 --LTCFPSNLDKPDSEALSASVDACTAAEKPGMNPRRQSTRNRPLTTRALEALECGFMGS 893

Query: 863 KKKQKSKDFSTREITFSNPSRKARSKLKPSSKRGTAGTVFVDLK 906
            K+QKS    T+E+   + SR +  K+K ++ RG   +  VD K
Sbjct: 894 VKRQKSMQVQTQELPLPSSSRWSHIKVKFTASRGKIDSGIVDAK 937

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224125226\|ref\|XP_002319531.1\| predicted protein [Populus trichocarpa] gi\|222857907\|gb\|EEE95454.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224123534\|ref\|XP_002330145.1\| predicted protein [Populus trichocarpa] gi\|222871601\|gb\|EEF08732.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359487613\|ref\|XP_002280354.2\| PREDICTED: uncharacterized protein LOC100254594 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296089663\|emb\|CBI39482.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147840233\|emb\|CAN77379.1\| hypothetical protein VITISV_043864 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225432278\|ref\|XP_002275999.1\| PREDICTED: uncharacterized protein LOC100245979 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296086604\|emb\|CBI32239.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147783832\|emb\|CAN63568.1\| hypothetical protein VITISV_043429 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297736863\|emb\|CBI26064.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		936
TAIR\|locus:2011050		915	AT1G55050 "AT1G55050" [Arabido	0.376	0.384	0.473	7.2e-109
TAIR\|locus:2043313		805	AT2G47820 "AT2G47820" [Arabido	0.478	0.556	0.419	2.2e-103
TAIR\|locus:2036019		916	AT1G09050 "AT1G09050" [Arabido	0.893	0.912	0.338	3.7e-103
TAIR\|locus:2036059		911	AT1G09040 "AT1G09040" [Arabido	0.856	0.880	0.336	1.2e-99

TAIR\|locus:2011050 AT1G55050 "AT1G55050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 806 (288.8 bits), Expect = 7.2e-109, Sum P(3) = 7.2e-109
 Identities = 176/372 (47%), Positives = 237/372 (63%)

Query:   129 EEMKPKNREAKVAGMTNLDQLSKCT-SCSPVPGFLRDPWKDSEKDIFLLGLYIFGKNFFQ 187
             E +K   R+    G ++ +  SK   +   VP      W+D E D F+LGLY FGKNF Q
Sbjct:    91 ESLKSLKRKRSRRGGSDGNSGSKRRMNLEAVPEKSSSSWEDLEVDGFVLGLYTFGKNFAQ 150

Query:   188 IKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCRKPRSRKCVYGRKIFSGWRQQELVSRL 247
             +++ +E+K  G+IL FYYG+FY S  ++ W++  K RS +C+ G+K++S WR Q L+SRL
Sbjct:   151 VQKLLESKATGEILLFYYGKFYGSAKYKTWSNYLKKRSTRCIQGKKLYSDWRLQLLLSRL 210

Query:   248 LPHIPEES-HNSLLEVSKSFAEGRTSLESYVFSLQAAVGVHALVESVGIGKGKEDLTSLT 306
             +  I +ES    L++VSKSFAEG+ SLE Y+ +++  VG+  LVE+V IGK KEDLT LT
Sbjct:   211 IRSITDESKEQKLVDVSKSFAEGKKSLEEYINAVKKLVGLRCLVEAVAIGKDKEDLTVLT 270

Query:   307 IEPVKTNPVSSVFPTMPSGKA-CSSLTSTDIIKFLTGDFRLSKARCNDIFWEAVWPRLLA 365
              +PV       V   +P+G    +SLT   II+ L+G  R+SKARCNDIFW+AVWPRLL 
Sbjct:   271 TKPVDVEQWFRVSSAVPAGLGEYNSLTVEGIIEKLSGGSRVSKARCNDIFWDAVWPRLLH 330

Query:   366 RGWRSEQPRDEGYVSSKDCLVFLMPGVKKFSRRKLVKGDHYFDSVSDILKKVASEPKXXX 425
             RGWRSE P+D+GY+ SK+ +VFL+PGVKKFSR+KLVK DHYFDS+SDILKKV SEP+   
Sbjct:   331 RGWRSELPKDQGYIKSKEHIVFLVPGVKKFSRKKLVKRDHYFDSISDILKKVVSEPELLE 390

Query:   426 XXXXXPRVSRCNEEDQWVLEELSDQDNSSNHRPHCYLKPLTSNYKLERMKFMIVDSS-LV 484
                   R     EE+ +         N S    HCYL+  +S+     MKF +VD+S   
Sbjct:   391 ETAEEER-----EENTY---------NQSKQEKHCYLRSPSSSST--HMKFTVVDTSRFA 434

Query:   485 QGAKSSKARELR 496
                K  + RELR
Sbjct:   435 SRGKLYEFRELR 446

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2043313 AT2G47820 "AT2G47820" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036019 AT1G09050 "AT1G09050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036059 AT1G09040 "AT1G09040" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00130177	hypothetical protein (904 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		936
cd11661		46	cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma	6e-06

>gnl\|CDD\|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins	Back alignment and domain information

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 166 WKDSEKDIFLLGLYIFGKNFFQIKR-FIETKEMGDILSFYY 205
           W +SE  +F  GL  +GK+F  I++ F+  K +G+++ FYY
Sbjct: 2   WSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGELVEFYY 42

Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		936
KOG4329		445	consensus DNA-binding protein [General function pr	99.73
KOG3554		693	consensus Histone deacetylase complex, MTA1 compon	98.8
KOG4167		907	consensus Predicted DNA-binding protein, contains	98.76
KOG1194		534	consensus Predicted DNA-binding protein, contains	98.54
smart00717		49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	97.25
PF00249		48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.06
PF01448		55	ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (E	96.89
cd00167		45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	96.75
PF12174		70	RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: I	93.72
PF13921		60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	92.98
TIGR01557		57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	92.24
KOG4468		782	consensus Polycomb-group transcriptional regulator	91.06
cd04709		164	BAH_MTA BAH, or Bromo Adjacent Homology domain, as	90.47

>KOG4329 consensus DNA-binding protein [General function prediction only]	Back alignment and domain information

Probab=99.73  E-value=1.3e-18  Score=188.41  Aligned_cols=154  Identities=19%  Similarity=0.308  Sum_probs=98.7

Q ss_pred             CCCCCCcccCCcccccCCCCCchhhhhhhccCCCCccccccccccccccceeeeeeccccCCCCC--c----cchh-hhc
Q 002329           34 GDRQVNPRIGDEFQVEIPPMITGSEYIQLLMNPTDSEYIFHASHSFLMGLAIPIMWLHNELNNPD--E----SVKY-TKR  106 (936)
Q Consensus        34 gdp~v~PRVGdEYQaEIP~LiTes~~~~l~~np~d~e~i~~~~~~f~vGLpIPImW~~~e~~~~~--~----~~kS-~~~  106 (936)
                      +|=.-.++||..|||+||.++..         ....+.+-+..        +.++|-+...-..+  +    +.+- .+.
T Consensus       168 d~wKk~ImVg~~fQAdip~~~~~---------~~e~~~~yene--------dqllwDps~lpedEVie~l~k~v~~~~~~  230 (445)
T KOG4329|consen  168 DDWKKEIMVGVLFQADIPLGNEA---------TVEEEKRYENE--------DQLLWDPSNLPEDEVIEFLLKAVVRLRKE  230 (445)
T ss_pred             chhhhheeeccchhccccchhhh---------hhhhccccccc--------ceeeeccccCchHHHHHHHHHHHHhhhcc
Confidence            44566789999999999999874         22223322222        67888765321110  1    0111 111


Q ss_pred             ccccccCCCCCCCCCccccCCCcccCCc--cchhhhccccccccccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhcc
Q 002329          107 KKIRTNTGKKSSEPNFSELNDGEEMKPK--NREAKVAGMTNLDQLSKCTSCSPVPGFLR-DPWKDSEKDIFLLGLYIFGK  183 (936)
Q Consensus       107 ~~~~~~~~~~~~~~~ve~~dd~ke~~~a--~l~~~~~~~~~~~q~~k~~~~~pvPg~~~-~~Wse~E~~~F~lGL~ifGK  183 (936)
                      +...|..             -|+.++-.  .|+.-+..+++...+.+++-+--.|--.. ..|+|+||++|+.||..|||
T Consensus       231 ~~~p~~P-------------~gt~vkDnEqAL~~LvkcnfDteeAlrr~rfnvk~~rd~l~~wsEeEcr~FEegl~~yGK  297 (445)
T KOG4329|consen  231 HDQPCPP-------------EGTEVKDNEQALYELVKCNFDTEEALRRLRFNVKTVRDDLSGWSEEECRNFEEGLELYGK  297 (445)
T ss_pred             cCCCCCC-------------ccccccccHHHHHHHHHcCCcHHHHHHhcCCcceecccccccCCHHHHHHHHHHHHHhcc
Confidence            1111111             12222111  24444445566655555543333333222 79999999999999999999


Q ss_pred             chHHHHh-hhccccccchheeeccccccCccCcchh
Q 002329          184 NFFQIKR-FIETKEMGDILSFYYGEFYRSPAHRRWT  218 (936)
Q Consensus       184 Nf~~Ikk-fv~~K~~gEil~FYYgkf~ks~~y~rWS  218 (936)
                      |||+||+ .|++++|||||.|||+ |+||++|+.|.
T Consensus       298 DF~lIr~nkvrtRsvgElVeyYYl-WKkSeryd~~~  332 (445)
T KOG4329|consen  298 DFHLIRANKVRTRSVGELVEYYYL-WKKSERYDVFA  332 (445)
T ss_pred             cHHHHHhcccccchHHHHHHHHHH-hhcCcchhhHh
Confidence            9999999 9999999999999999 99999999875

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]	Back alignment and domain information

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]	Back alignment and domain information

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]	Back alignment and domain information

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	Back alignment and domain information

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins	Back alignment and domain information

>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function	Back alignment and domain information

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains	Back alignment and domain information

>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors	Back alignment and domain information

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A	Back alignment and domain information

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class	Back alignment and domain information

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]	Back alignment and domain information

>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		936
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2eqr_A		61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	1e-09
2crg_A		70	Metastasis associated protein MTA3; transcription	3e-09
2yqk_A		63	Arginine-glutamic acid dipeptide repeats protein;	5e-09
4a69_C		94	Nuclear receptor corepressor 2; transcription, hyd	1e-08
2ltp_A		89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	3e-07
2xag_B		482	REST corepressor 1; amine oxidase, chromatin regul	5e-06
2iw5_B		235	Protein corest, REST corepressor 1; oxidoreductase	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 74.5 bits (182), Expect = 1e-13
 Identities = 102/740 (13%), Positives = 203/740 (27%), Gaps = 246/740 (33%)

Query: 127 DGEEMKPKNREAKVAGMTNLDQLSKCTSCSPVPGFLRDPWKDSE-KDIFLLG------LY 179
           +  E + + ++         D       C  V    +      E   I +        L 
Sbjct: 10  ETGEHQYQYKDIL---SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 180 IFG----KNFFQIKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCRKPRSRKCVYGRKIF 235
           +F     K    +++F+E     ++L   Y  F  SP     T+ R+P     +Y  +  
Sbjct: 67  LFWTLLSKQEEMVQKFVE-----EVLRINYK-FLMSPIK---TEQRQPSMMTRMYIEQRD 117

Query: 236 SGWRQQELVSRLLPHIP-EESHNSLLEVSKSFAEGRTSLESYVFSLQAA--VGVHALVES 292
             +   ++ ++   ++   + +  L          R +L      L+ A  V +  ++  
Sbjct: 118 RLYNDNQVFAKY--NVSRLQPYLKL----------RQALLE----LRPAKNVLIDGVL-- 159

Query: 293 VGIGKGKEDLTSLTIEPVKTNPVSSVFPTMPSGKACSSLTSTDIIKFLTGDFRLSKARCN 352
            G GK     T + ++   +  V                                     
Sbjct: 160 -GSGK-----TWVALDVCLSYKVQCKMD-------------------------------F 182

Query: 353 DIFWEAVWPRLLARGWRSEQPRDEGYVSSKDCLVFLMPGVKKFSRRKLVKGDHYFDSVSD 412
            IFW  +                    +S + ++             L K  +  D    
Sbjct: 183 KIFWLNL-----------------KNCNSPETVL-----------EMLQKLLYQIDPNWT 214

Query: 413 ILKKVASEPKLLELEAEEPRVSRCNEEDQWVLEELSDQDNSSNHRPHCYLKPLTSNYKLE 472
                +S  KL           R +     +   L  +        +C L          
Sbjct: 215 SRSDHSSNIKL-----------RIHSIQAELRRLLKSKPY-----ENCLL---------- 248

Query: 473 RMKFMIVDSSLVQGAKSSKARELRYLPVHFNDTYKLSC--LLRT-DEG--FELDAANM-- 525
                ++ +  VQ AK+  A         FN    LSC  LL T  +     L AA    
Sbjct: 249 -----VLLN--VQNAKAWNA---------FN----LSCKILLTTRFKQVTDFLSAATTTH 288

Query: 526 -PLKEEKNIGTEKHSKDNFYDGGAK--NMKF------------LVVD---TSLVNQGKSW 567
             L       T    K        K  + +               +     S+ +   +W
Sbjct: 289 ISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 568 K-VRTLRNCPVESKIASDISFLSRVDKGKSFSN-SLNESESNVADTTLS--------SEP 617
              + +    + + I S ++ L   +  K F   S+    +++    LS        S+ 
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 618 DVVDGAVSNKKALNSDSGNN-VDMHPHQRASNSEDRKPSDRVIKLHFSRRAKSDSTGNLA 676
            VV   +     +      + + +         E +   +    LH  R           
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYL----ELKVKLENEYALH--RS---------- 448

Query: 677 PLVKRRRLTACAKAESCII----GYFQP--GHESKEVGPCSALDLPDVGYND-------I 723
            +V    +     ++  I      YF    GH  K +     + L  + + D       I
Sbjct: 449 -IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 724 SQVGTSLEKISP-------LSRY----SEGSPE-EEVSRSMMSGSCFSKKKSHGKNEKHQ 771
               T+             L  Y     +  P+ E +  +++    F  K    +N    
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD---FLPK--IEEN---- 558

Query: 772 ILSSIDLNVSKIPSNSDNGE 791
           ++ S   ++ +I   +++  
Sbjct: 559 LICSKYTDLLRIALMAEDEA 578

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61	Back alignment and structure

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70	Back alignment and structure

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63	Back alignment and structure

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94	Back alignment and structure

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89	Back alignment and structure

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482	Back alignment and structure

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		936
2xag_B		482	REST corepressor 1; amine oxidase, chromatin regul	99.6
2crg_A		70	Metastasis associated protein MTA3; transcription	99.45
2yqk_A		63	Arginine-glutamic acid dipeptide repeats protein;	99.43
4a69_C		94	Nuclear receptor corepressor 2; transcription, hyd	99.1
2eqr_A		61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.85
2iw5_B		235	Protein corest, REST corepressor 1; oxidoreductase	98.13
2xag_B		482	REST corepressor 1; amine oxidase, chromatin regul	97.38
2yus_A		79	SWI/SNF-related matrix-associated actin- dependent	96.56
1wgx_A		73	KIAA1903 protein; MYB DNA-binding domain, human cD	96.55
2cu7_A		72	KIAA1915 protein; nuclear protein, SANT domain, DN	96.29
2yum_A		75	ZZZ3 protein, zinc finger ZZ-type-containing prote	95.62
2ltp_A		89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	94.61
1x41_A		60	Transcriptional adaptor 2-like, isoform B; transcr	95.01
2cqr_A		73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	94.44
4eef_G		74	F-HB80.4, designed hemagglutinin binding protein;	94.25
2d9a_A		60	B-MYB, MYB-related protein B; DNA binding, structu	93.86
2elk_A		58	SPCC24B10.08C protein; hypothetical protein, struc	92.91
1gv2_A		105	C-MYB, MYB proto-oncogene protein; transcription,	92.9
2k9n_A		107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	92.66
2cqq_A		72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	92.23
2dim_A		70	Cell division cycle 5-like protein; MYB_DNA-bindin	91.54
1guu_A		52	C-MYB, MYB proto-oncogene protein; transcription,	91.19
1h8a_C		128	AMV V-MYB, MYB transforming protein; transcription	91.06
3osg_A		126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	90.6
2cjj_A		93	Radialis; plant development, DNA-binding protein,	90.48
1gvd_A		52	MYB proto-oncogene protein; transcription, transcr	89.23
3zqc_A		131	MYB3; transcription-DNA complex, DNA-binding prote	88.86
1h89_C		159	C-MYB, MYB proto-oncogene protein; transcription/D	87.38
2llk_A		73	Cyclin-D-binding MYB-like transcription factor 1;	86.62
1w0t_A		53	Telomeric repeat binding factor 1; telomere, DNA-b	86.34
1h8a_C		128	AMV V-MYB, MYB transforming protein; transcription	86.16
2din_A		66	Cell division cycle 5-like protein; MYB_DNA-bindin	85.19
1ity_A		69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	84.62
1x58_A		62	Hypothetical protein 4930532D21RIK; MUS musculus a	83.13
3osg_A		126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	82.51
4b4c_A		211	Chromodomain-helicase-DNA-binding protein 1; chrom	81.26
1h89_C		159	C-MYB, MYB proto-oncogene protein; transcription/D	81.15
1gv2_A		105	C-MYB, MYB proto-oncogene protein; transcription,	80.41

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*	Back alignment and structure

Probab=99.60  E-value=6.7e-17  Score=180.74  Aligned_cols=58  Identities=22%  Similarity=0.544  Sum_probs=0.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhccchHHHHhhhccccccchheeeccccccCccCcchhccc
Q 002329          163 RDPWKDSEKDIFLLGLYIFGKNFFQIKRFIETKEMGDILSFYYGEFYRSPAHRRWTDCR  221 (936)
Q Consensus       163 ~~~Wse~E~~~F~lGL~ifGKNf~~Ikkfv~~K~~gEil~FYYgkf~ks~~y~rWS~cR  221 (936)
                      ...||++|+..|+.||++|||||++|++||++|+++|||.|||+ |+|+..|..|.+=.
T Consensus       189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~-WKKt~~yk~l~~~~  246 (482)
T 2xag_B          189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYS-WKKTRTKTSVMDRH  246 (482)
T ss_dssp             -----------------------------------------------------------
T ss_pred             ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcc-ccccccHHHHHHHH
Confidence            36999999999999999999999999999999999999999999 99999999997743

PyMOL of 2xag

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3	Back alignment and structure

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A	Back alignment and structure

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*	Back alignment and structure

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*	Back alignment and structure

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}	Back alignment and structure

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3	Back alignment and structure

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3	Back alignment and structure

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}	Back alignment and structure

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1	Back alignment and structure

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3	Back alignment and structure

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}	Back alignment and structure

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}	Back alignment and structure

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A	Back alignment and structure

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A	Back alignment and structure

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3	Back alignment and structure

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A	Back alignment and structure

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3	Back alignment and structure

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A	Back alignment and structure

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3	Back alignment and structure

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A	Back alignment and structure

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}	Back alignment and structure

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C	Back alignment and structure

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}	Back alignment and structure

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A	Back alignment and structure

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3	Back alignment and structure

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A	Back alignment and structure

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1	Back alignment and structure

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A	Back alignment and structure

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}	Back alignment and structure

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C	Back alignment and structure

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		936
d2crga1		57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	8e-12
d1xc5a1		68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-05

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57	Back information, alignment and structure


class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (142), Expect = 8e-12
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 164 DPWKDSEKDIFLLGLYIFGKNFFQI-KRFIETKEMGDILSFYYGEFYRSPAHRRW 217
           + W  SE  +F   L  +GK+F  I + F+  K +  I+ +YY  +  +  + + 
Sbjct: 2   EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY-MWKTTDRYVQQ 55

PyMOL of d2crga1

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		936
d2crga1		57	Metastasis associated protein MTA3 {Mouse (Mus mus	99.38
d1xc5a1		68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.55
d2iw5b1		65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.18
d2cu7a1		65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	97.9
d1x41a1		47	Transcriptional adaptor 2-like, TADA2L, isoform b	96.24
d1gv2a2		47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	94.64
d2cqra1		60	DnaJ homolog subfamily C member 1 {Human (Homo sap	94.63
d2cjja1		63	Radialis {Garden snapdragon (Antirrhinum majus) [T	94.08
d1ofcx1		52	SANT domain of the nucleosome remodeling ATPase IS	92.07
d1guua_		50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	90.1
d2cqqa1		59	DnaJ homolog subfamily C member 1 {Human (Homo sap	88.79
d1gvda_		52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	87.47
d1w0ua_		55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	82.11
d1w0ta_		52	DNA-binding domain of human telomeric protein, hTR	80.92

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=5e-14  Score=115.34  Aligned_cols=54  Identities=26%  Similarity=0.521  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHHHHHHHhccchHHHHh-hhccccccchheeeccccccCccCcchh
Q 002329          164 DPWKDSEKDIFLLGLYIFGKNFFQIKR-FIETKEMGDILSFYYGEFYRSPAHRRWT  218 (936)
Q Consensus       164 ~~Wse~E~~~F~lGL~ifGKNf~~Ikk-fv~~K~~gEil~FYYgkf~ks~~y~rWS  218 (936)
                      +.||++|++.|+.||..|||||++|.+ +|++|++++|+.|||. |+++++|.+|-
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~-~Kkt~~y~~~k   56 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM-WKTTDRYVQQK   56 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH-HHTCCSSCSCC
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH-HhCCchHhhcc
Confidence            579999999999999999999999998 8999999999999996 99999999883

PyMOL of d2crga1

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}	Back information, alignment and structure

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure