Citrus Sinensis ID: 002359

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-
MEESLMAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTLPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
cccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEHHHHHHHHcccccccccccEEEEEcEEEccccccccEEEEEEEccccccEEEEEccccccHHHHHHHHHHHccccEEEEEccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEcccEEEccccccccccHHHHHHHccccccccccccEEEEEccccccHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHccccccHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccc
cccccccccccccHHHHHHccccccccccccEEEcccEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHcccccEcccEEEcccccEEEHHHHHHHHHHHcHHHHHHHHHHHEHHHHHEEccccccEEEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHcccccEEEEEcccccccEEEEEccccccEEEEEEccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHccccEccccHHHHHHHHHHHHHHHccHEEEEEHHHHHccccccccEEEEEcEEEcccccEEEEccccEEEEcccccccccccccEEEEEEcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHccccccEEEEEcccccccEEEEEEEEcccccccccccccccEEEEEEEccHHHHHcEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcc
meeslmagkrkapeedlhvtgtpeeestkkqrnltrscvhevavpsgyaltkdeaihgtfanpvyngemaktysfeldpfqRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQrviytsplkalsnQKYRELHQEFKDvglmtgdvtlspnascLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHymkdrergvvweesiiflppAIKMVFLSATMSNATQFAEWICHlhkqpchvvytdfrptplqhyvfpvggsgLYLVVDEKEQFREDNFVKLQDTFLKqkiggrrengkasgrmakggsgsggsDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMskldfntqeekDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETfamglnmpakTVVFTAVkkwdgdshryigsgEYIQmsgragrrgkddrgiCIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIkvreggtdwgwGVVVNVVkkpsagvgtlpsrgggyivpvqlpLISTLskirlsvppdlrplDARQSILLAVQELEsrfpqglpklnpvkdmkiedpevVDLVNQIEELEHKlfahplnksqdenQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFngtfndldhHQVAALAscfipvdkssEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRgimfsnslyl
meeslmagkrkapeedlhvtgtpeeestkkqrnltrsCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPlkalsnqkYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLqdtflkqkiggrrengkasgrmakggsgsggsDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKwdgdshryigsgeyiqmsgragrrgkddRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLmseitrpeRVLYYLGSGRLIKVReggtdwgwgVVVNVVKKpsagvgtlpsrgggYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELEsrfpqglpklnpvkdmkiEDPEVVDLVNQIEELEHKLFahplnksqdeNQIRCFQRKAEVNHEIQqlkskmrdsqiQKFRDELKNRSRVLKKlghidadgvvqLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQnecklevnvDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAqavgevnlEKKFAAaseslrrgimfsnslyl
MEESLMAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENgkasgrmakggsgsggsDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSgragrrgkddrgICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREggtdwgwgvvvnvvkkpsagvGTLPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
************************************SCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK***************************IFKIVKMIMERKFQPVIVFSFSRREC********************VEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDI*********************VAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTLPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQEL*********************PEVVDLVNQIEELEHKLFAH***********************************************RVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDK****INL****************KIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA******************
****************************************EVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK************************KGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYE************LEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSE*T**ERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTLPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLA**ELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQ**********QKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVD*************KPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
************************************SCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG*****************SGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQM*********DDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVS*************EAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTLPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
*****************************KQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ***********************GSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTLPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEESLMAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAExxxxxxxxxxxxxxxxxxxxxPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTLPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRxxxxxxxxxxxxxxxxxxxxxKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query931 2.2.26 [Sep-21-2011]
Q9CZU31040 Superkiller viralicidic a yes no 0.974 0.872 0.498 0.0
P422851042 Superkiller viralicidic a yes no 0.939 0.839 0.512 0.0
O142321117 ATP-dependent RNA helicas yes no 0.969 0.808 0.473 0.0
P470471073 ATP-dependent RNA helicas yes no 0.950 0.824 0.467 0.0
Q232231026 mRNA transport homolog 4 yes no 0.944 0.856 0.452 0.0
O137991030 Uncharacterized helicase no no 0.949 0.858 0.430 0.0
Q154771246 Helicase SKI2W OS=Homo sa no no 0.899 0.671 0.355 1e-144
P352071287 Antiviral helicase SKI2 O no no 0.891 0.644 0.320 1e-135
O598011213 Putative ATP-dependent RN no no 0.501 0.384 0.430 1e-111
Q10701906 Probable helicase HelY OS yes no 0.886 0.910 0.286 1e-79
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1 Back     alignment and function desciption
 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1010 (49%), Positives = 666/1010 (65%), Gaps = 103/1010 (10%)

Query: 3    ESLMAGKRKAPEEDLHVTGTPEEESTKKQR-----------------------NLTRSCV 39
            ES   GK K    DL V GT E    KK R                            C 
Sbjct: 53   ESASGGKNK---RDLDVEGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCT 109

Query: 40   HEVAVPSG--YALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVS 97
            HEVA+P+   Y   K              G+ AK Y F LD FQR ++ C++ N+SVLVS
Sbjct: 110  HEVALPADEDYIPLKPRV-----------GKAAKEYPFILDAFQREAIQCVDNNQSVLVS 158

Query: 98   AHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP 157
            AHTSAGKT  AEYAIA+A R+KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P
Sbjct: 159  AHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINP 218

Query: 158  NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217
             ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D ERGVVWEE+II LP  +  V
Sbjct: 219  TASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYV 278

Query: 218  FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277
            FLSAT+ NA QFAEWICHLHKQPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE   FRE
Sbjct: 279  FLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFRE 338

Query: 278  DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSF 337
            DNF          +  G    G   GR  KGG+  G S++FKIVKMIMER FQPVI+FSF
Sbjct: 339  DNFNTAMQVL---RDAGDLAKGDQKGR--KGGT-KGPSNVFKIVKMIMERNFQPVIIFSF 392

Query: 338  SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397
            S+++CE +A+ M+KLDFNT EEK  VE+VF NA+DCL++ED+ LP +E +LPLLKRGI +
Sbjct: 393  SKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 452

Query: 398  HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS 457
            HH GLLP++KE +E+LF EGL+KALFATETFAMG+NMPA+TV+FT  +K+DG   R+I S
Sbjct: 453  HHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISS 512

Query: 458  GEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG------------------- 498
            GEYIQMSGRAGRRG DDRGI I+MVDE+M   T+   +L+G                   
Sbjct: 513  GEYIQMSGRAGRRGMDDRGIVILMVDEKMS-PTIGKQLLKGSADPLNSAFHLTYNMVLNL 571

Query: 499  ----QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDI 554
                +   E++++ SF+QFQ+ +A+P + +KV   EE+   +    E  V  Y+K++  +
Sbjct: 572  LRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQL 631

Query: 555  AQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKP------------ 602
            A+L K++   I +P+  L +L  GRL+KV+  G D+GWGVVVN  KK             
Sbjct: 632  AKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPL 691

Query: 603  ----------------SAGVGTLPS----RGGGYIVPVQLPLISTLSKIRLSVPPDLRPL 642
                            SA     P+    +G   +VPV + L+S +S +RL +P DLRP+
Sbjct: 692  YVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPV 751

Query: 643  DARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPL-NKS 701
            D RQS+L ++QE++ RFP G+P L+P+ DM I+D  +  ++ ++E  EH++++HPL N  
Sbjct: 752  DNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDP 811

Query: 702  QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLK 761
              E      +RKA++  +I+  K +++ ++     DELK R RVL++LG   +  V+++K
Sbjct: 812  NLETVYTLCERKAQIALDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMK 871

Query: 762  GRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQ 821
            GR AC I + DELL+TE+MFNG FNDL   Q  AL SCF+  + SSE   L  +LA PL+
Sbjct: 872  GRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLR 931

Query: 822  QLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGS 881
            Q+QE A++IA++  E KLE++ + Y+ S+ +P LMDV+Y W+ GATFA + +MTD+FEGS
Sbjct: 932  QMQECAKRIAKVSAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGS 990

Query: 882  IIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
            IIR  RRL+E L Q+  AA+A+G   LE KFA     ++R I+F+ SLYL
Sbjct: 991  IIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1040
May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3 Back     alignment and function description
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1 Back     alignment and function description
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1 Back     alignment and function description
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1 Back     alignment and function description
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1 Back     alignment and function description
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3 Back     alignment and function description
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2 Back     alignment and function description
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1 Back     alignment and function description
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query931
359484919995 PREDICTED: superkiller viralicidic activ 0.998 0.934 0.835 0.0
224087335985 predicted protein [Populus trichocarpa] 0.974 0.920 0.833 0.0
4494703741014 PREDICTED: superkiller viralicidic activ 1.0 0.918 0.793 0.0
255581147962 helicase, putative [Ricinus communis] gi 0.957 0.926 0.831 0.0
356513235982 PREDICTED: LOW QUALITY PROTEIN: superkil 0.996 0.945 0.800 0.0
356523685976 PREDICTED: superkiller viralicidic activ 0.993 0.947 0.804 0.0
357520641984 ATP-dependent RNA helicase DOB1 [Medicag 0.997 0.944 0.797 0.0
297831726984 HUA enhancer 2 [Arabidopsis lyrata subsp 1.0 0.946 0.795 0.0
18396436995 RNA helicase, ATP-dependent, SK12/DOB1 p 1.0 0.935 0.786 0.0
16024936991 HUA enhancer 2 [Arabidopsis thaliana] 1.0 0.939 0.786 0.0
>gi|359484919|ref|XP_002266524.2| PREDICTED: superkiller viralicidic activity 2-like 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1682 bits (4356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 832/996 (83%), Positives = 878/996 (88%), Gaps = 66/996 (6%)

Query: 1   MEESLMAGKRKAPEEDLHVTGTP-EEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGT 59
           MEES   GKRK PEE+  V  TP +EES  K+RNLTR+CVHE AVP GY   KDE++HGT
Sbjct: 1   MEESPTLGKRKLPEENSEVKQTPKQEESASKRRNLTRTCVHEAAVPVGYTSNKDESVHGT 60

Query: 60  FANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK 119
            +NPVYNG+MAKTY F LDPFQ+VSVACLERNESVLVSAHTSAGKTAVAEY+IAMAFRDK
Sbjct: 61  LSNPVYNGKMAKTYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYSIAMAFRDK 120

Query: 120 QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV 179
           QRVIYTSPLKALSNQKYREL QEF DVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV
Sbjct: 121 QRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV 180

Query: 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQ 239
           LKEVAWVIFDEIHYMKDRERGVVWEESIIFLP AIKMVFLSATMSNAT+FAEWIC+LHKQ
Sbjct: 181 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPTAIKMVFLSATMSNATEFAEWICNLHKQ 240

Query: 240 PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK--IGGRRE 297
           PCHVVYTDFRPTPLQHYVFP+GGSGLYLVVDE EQFREDNFVKLQD+F KQK  +G +  
Sbjct: 241 PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFREDNFVKLQDSFTKQKQGVGSKSV 300

Query: 298 NGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357
           N K SGR+AKGG+ SGGSDIFKIVKMIMERKFQPVI+FSFSRRECEQHAMSMSKLDFNT+
Sbjct: 301 NSKTSGRIAKGGNASGGSDIFKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTK 360

Query: 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG 417
           EEKD VEQVF+NAV CLNEEDRNLPAIELMLPLL+RGIAVHHSGLLP+IKELVELLFQEG
Sbjct: 361 EEKDVVEQVFRNAVLCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEG 420

Query: 418 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGI 477
           LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHR+IGSGEYIQMSGRAGRRGKDDRGI
Sbjct: 421 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDDRGI 480

Query: 478 CIIMVDEQMEMNTLKDMVL------------------------EGQFTAEHVIKNSFHQF 513
           CIIM+DEQMEMNTL+DMVL                        EGQFTAEHVI NSFHQF
Sbjct: 481 CIIMIDEQMEMNTLRDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVISNSFHQF 540

Query: 514 QYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLY 573
           QYEKALPDIGKKVSKLE EAA LDASGEAEVAEYHKL+LDIAQLEKK+MSEITRPERVLY
Sbjct: 541 QYEKALPDIGKKVSKLEHEAAMLDASGEAEVAEYHKLRLDIAQLEKKMMSEITRPERVLY 600

Query: 574 YLGSGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTLPS-----RGGGYIV---------- 618
           +L  GRL+KVREGGTDWGWGVVVNVVKK  AG GTLPS     RGGGYIV          
Sbjct: 601 FLLPGRLVKVREGGTDWGWGVVVNVVKKAPAG-GTLPSALSSSRGGGYIVDTLLHCSPGS 659

Query: 619 -----------------------PVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQEL 655
                                  PVQL LIS LSK+R+S+PPDLRPL+ARQSILLAVQEL
Sbjct: 660 TENGSRPKPCPPHPGEKGEMHVVPVQLSLISALSKLRISIPPDLRPLEARQSILLAVQEL 719

Query: 656 ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAE 715
            +RFPQGLPKLNPVKDM IEDPE V+L NQIEELE KLFAHPL+KSQDENQIR FQRKAE
Sbjct: 720 GTRFPQGLPKLNPVKDMGIEDPEFVELANQIEELEQKLFAHPLHKSQDENQIRSFQRKAE 779

Query: 716 VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELL 775
           VNHEIQQLK+KMRDSQ+QKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELL
Sbjct: 780 VNHEIQQLKTKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELL 839

Query: 776 VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQN 835
           VTELMFNGTFNDLDHHQVAALASCFIP DKS+EQI+LR ELAKPLQQLQ+SAR+IAEIQ+
Sbjct: 840 VTELMFNGTFNDLDHHQVAALASCFIPGDKSTEQIHLRTELAKPLQQLQDSARRIAEIQH 899

Query: 836 ECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 895
           ECKLEVNVDEYVEST RP+LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ
Sbjct: 900 ECKLEVNVDEYVESTARPYLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 959

Query: 896 LRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
           LRAAA AVGE NLE KFAAASESLRRGIMF+NSLYL
Sbjct: 960 LRAAANAVGEANLENKFAAASESLRRGIMFANSLYL 995

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224087335|ref|XP_002308126.1| predicted protein [Populus trichocarpa] gi|222854102|gb|EEE91649.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449470374|ref|XP_004152892.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255581147|ref|XP_002531387.1| helicase, putative [Ricinus communis] gi|223529017|gb|EEF31007.1| helicase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356513235|ref|XP_003525319.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity 2-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356523685|ref|XP_003530466.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357520641|ref|XP_003630609.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula] gi|355524631|gb|AET05085.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297831726|ref|XP_002883745.1| HUA enhancer 2 [Arabidopsis lyrata subsp. lyrata] gi|297329585|gb|EFH60004.1| HUA enhancer 2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18396436|ref|NP_565338.1| RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] gi|20197305|gb|AAC67203.2| expressed protein [Arabidopsis thaliana] gi|28973761|gb|AAO64196.1| putative DEAD/DEAH box RNA helicase (HUA ENHANCER2) [Arabidopsis thaliana] gi|330250934|gb|AEC06028.1| RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|16024936|gb|AAL11446.1| HUA enhancer 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query931
TAIR|locus:2063648995 HEN2 "hua enhancer 2" [Arabido 0.532 0.498 0.793 0.0
ZFIN|ZDB-GENE-040426-28541034 skiv2l2 "superkiller viralicid 0.528 0.475 0.574 6.1e-242
MGI|MGI:19194481040 Skiv2l2 "superkiller viralicid 0.571 0.511 0.548 1.9e-236
UNIPROTKB|P422851042 SKIV2L2 "Superkiller viralicid 0.571 0.510 0.546 3.1e-236
UNIPROTKB|E2RCI51042 SKIV2L2 "Uncharacterized prote 0.609 0.544 0.523 5e-236
UNIPROTKB|F5H7E2941 SKIV2L2 "Superkiller viralicid 0.549 0.544 0.562 1e-235
UNIPROTKB|F1SLL61046 SKIV2L2 "Uncharacterized prote 0.571 0.508 0.550 4.4e-235
FB|FBgn00019861055 l(2)35Df "lethal (2) 35Df" [Dr 0.495 0.436 0.584 1.9e-234
SGD|S0000035861073 MTR4 "ATP-dependent 3'-5' RNA 0.511 0.443 0.571 1.3e-222
DICTYBASE|DDB_G02756331128 DDB_G0275633 "superkiller vira 0.487 0.402 0.597 2.1e-222
TAIR|locus:2063648 HEN2 "hua enhancer 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2026 (718.2 bits), Expect = 0., Sum P(3) = 0.
 Identities = 396/499 (79%), Positives = 424/499 (84%)

Query:     1 MEESLMAGKRKAPEED-LHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGT 59
             MEE    GKRK  E   L    TP  E   K+R+L R+CVHEVAVP+ Y  TK+E IHGT
Sbjct:     5 MEEPETLGKRKESESSKLRSDETPTPEPRTKRRSLKRACVHEVAVPNDYTPTKEETIHGT 64

Query:    60 FANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK 119
               NPV+NG+MAKTY F+LDPFQ VSVACLER ES+LVSAHTSAGKTAVAEYAIAMAFRDK
Sbjct:    65 LDNPVFNGDMAKTYPFKLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDK 124

Query:   120 QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV 179
             QRVIYTSPLKALSNQKYREL  EFKDVGLMTGDVTLSPNASCLVMTTEILR MLYRGSEV
Sbjct:   125 QRVIYTSPLKALSNQKYRELQHEFKDVGLMTGDVTLSPNASCLVMTTEILRAMLYRGSEV 184

Query:   180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQ 239
             LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT+FAEWIC+LHKQ
Sbjct:   185 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQ 244

Query:   240 PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI--GGRRE 297
             PCHVVYTDFRPTPLQHY FP+GG GLYLVVD+ EQFRED+FVK+QDTF K K   G +  
Sbjct:   245 PCHVVYTDFRPTPLQHYAFPMGGGGLYLVVDDNEQFREDSFVKMQDTFPKPKSNDGKKSA 304

Query:   298 NXXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357
             N                 D++KIVKMIMERKF+PVI+FSFSRRECEQHA+SMSKLDFNT 
Sbjct:   305 NGKSGGRGAKGGGGPGDSDVYKIVKMIMERKFEPVIIFSFSRRECEQHALSMSKLDFNTD 364

Query:   358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG 417
             EEK+ VEQVF NA+ CLNEEDR+LPAIELMLPLL+RGIAVHHSGLLPVIKELVELLFQEG
Sbjct:   365 EEKEVVEQVFNNAMQCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEG 424

Query:   418 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXI 477
             LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS            I
Sbjct:   425 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGI 484

Query:   478 CIIMVDEQMEMNTLKDMVL 496
             CIIM+DEQMEMNTL+DM+L
Sbjct:   485 CIIMIDEQMEMNTLRDMML 503
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0003724 "RNA helicase activity" evidence=ISS
GO:0010093 "specification of floral organ identity" evidence=IMP
GO:0016070 "RNA metabolic process" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0003002 "regionalization" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA
GO:0033043 "regulation of organelle organization" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
ZFIN|ZDB-GENE-040426-2854 skiv2l2 "superkiller viralicidic activity 2-like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1919448 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P42285 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCI5 SKIV2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F5H7E2 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLL6 SKIV2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0001986 l(2)35Df "lethal (2) 35Df" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
SGD|S000003586 MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H family" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275633 DDB_G0275633 "superkiller viralicidic activity 2-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q23223MTR4_CAEEL3, ., 6, ., 4, ., -0.45250.94410.8567yesno
P42285SK2L2_HUMAN3, ., 6, ., 4, ., 1, 30.51260.93980.8397yesno
P47047MTR4_YEAST3, ., 6, ., 4, ., 1, 30.46700.95050.8247yesno
Q9CZU3SK2L2_MOUSE3, ., 6, ., 4, ., 1, 30.49800.97420.8721yesno
O14232MTR4_SCHPO3, ., 6, ., 4, ., -0.47380.96990.8084yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.914
3rd Layer3.6.40.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VI0599
hypothetical protein (986 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.86.17.1
hypothetical protein (573 aa)
   •    0.421
gw1.I.4832.1
hypothetical protein (422 aa)
   •  • 0.401
estExt_Genewise1_v1.C_LG_VII2715
hypothetical protein (380 aa)
   •    0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query931
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 0.0
pfam13234266 pfam13234, rRNA_proc-arch, rRNA-processing arch do 1e-79
pfam08148178 pfam08148, DSHCT, DSHCT (NUC185) domain 9e-64
COG1204766 COG1204, COG1204, Superfamily II helicase [General 4e-52
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 5e-45
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 1e-32
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 3e-31
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 4e-31
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 7e-30
cd13154129 cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain 4e-29
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 6e-25
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 1e-23
smart0049082 smart00490, HELICc, helicase superfamily c-termina 2e-13
TIGR04121803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 1e-11
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-11
COG1201814 COG1201, Lhr, Lhr-like helicases [General function 4e-11
PRK13767876 PRK13767, PRK13767, ATP-dependent helicase; Provis 1e-08
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 6e-08
COG1205851 COG1205, COG1205, Distinct helicase family with a 2e-07
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 9e-07
TIGR00614470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 8e-05
COG1643845 COG1643, HrpA, HrpA-like helicases [DNA replicatio 3e-04
TIGR01389591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 6e-04
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 8e-04
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 0.001
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  806 bits (2083), Expect = 0.0
 Identities = 394/967 (40%), Positives = 547/967 (56%), Gaps = 89/967 (9%)

Query: 40   HEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAH 99
             +VAVP  Y +  D       A P      A+ Y FELDPFQ+ ++A LER ESVLV A 
Sbjct: 89   SDVAVPDDYDMVPDAESPFDLAPP------AREYPFELDPFQQEAIAILERGESVLVCAP 142

Query: 100  TSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV----GLMTGDVTL 155
            TS+GKT VAEYAIA+A RD QRVIYTSP+KALSNQKYR+L  +F DV    GLMTGDV++
Sbjct: 143  TSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSI 202

Query: 156  SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215
            +P+A CLVMTTEILR MLYRGSE L+++ WV+FDE+HY+ DRERGVVWEE II LP  ++
Sbjct: 203  NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262

Query: 216  MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQF 275
             VFLSAT+ NA +FAEWI  +H QP HVV T+ RP PL+H+V+   G GL+ +VDEK++F
Sbjct: 263  FVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYV--GKGLFDLVDEKKKF 320

Query: 276  REDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGS-----DIFKIVKMIMERKFQ 330
              +NF     +        R  +    GR A+      GS        +IV  + +    
Sbjct: 321  NAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLL 380

Query: 331  PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDT-VEQVFQNAVDCLNEEDRNLPA-IELML 388
            P IVFSFSRR CE+ A  +S LD    EEK+  + ++  +A+  L EEDR LP  I  + 
Sbjct: 381  PAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEIS 440

Query: 389  PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
             LL RGIAVHH+GLLP IKELVE LFQEGLVK +FATETFA+G+NMPA+TVVFT++ K+D
Sbjct: 441  ALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFD 500

Query: 449  GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV-DEQMEMNTLKDMV------LEGQF- 500
            G+ HR++  GEY QMSGRAGRRG D  G  I++    + E +    +       L  QF 
Sbjct: 501  GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFR 560

Query: 501  ----------------TAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDA-SGEAE 543
                            TAE +++ SF QFQ  ++LP+I +K+ +LE+E   +       +
Sbjct: 561  LSYNMILNLLRVEGLQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELFGTD 620

Query: 544  VAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPS 603
              +  KL LD  +L KKL  E+      L  L  GR++++++G     WG ++ + K+ +
Sbjct: 621  ENDAPKLSLDYEKLRKKLNEEMRLQAAGLRALRKGRVVQIKDGLAALFWGRLLKLTKRYT 680

Query: 604  AGVGTL---------PSRGG------------------------GYIVPVQLPLISTLSK 630
              +            P+                             I  V L   + + +
Sbjct: 681  TKLTDHELYLAVLVEPNADFSFPRPLVKAMPHMNRESRWLVKILFRISFVYLLNATEILE 740

Query: 631  IRLSVPPDLRPLDARQSILLAVQELESRFPQGLPK-LNPVKDMKIEDPEVVDLVNQIEEL 689
            + L++P  L     +        E  +    G  K L  V +MKI+ PE+   + ++   
Sbjct: 741  LILTMPRRLLSRQGKLRRGEPSNEAIAAGLDGNEKILENVVEMKIQVPELTVSLLKLRFG 800

Query: 690  EHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKK 748
             + L  +PL N    E  I      +++  EI+ L S +       F D+ K    VLKK
Sbjct: 801  RYHLSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSIEA---LSFLDDYKTLQEVLKK 857

Query: 749  LGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSE 808
            LG I+ + VV +KGR A  I + DELL+TEL+F+G FNDL+  ++AAL S F+  +K+ +
Sbjct: 858  LGFIEDNAVVLIKGRVAAEISSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDD 917

Query: 809  QINLRME----LAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSK 864
                  E    L   L +L E ARK+ + QN  ++E+  +    S     LM+V+Y W++
Sbjct: 918  GTAEAPEITPALRDALLRLLELARKLNKDQNSSQIEIYPELNDFSVG---LMEVVYEWAR 974

Query: 865  GATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIM 924
            G +FA++  +T + EGS +R  RRL E L QLR AA  +G   LE+K   A + +RR I+
Sbjct: 975  GLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNPELEEKAYRAIQEIRRDIV 1034

Query: 925  FSNSLYL 931
            F +SLYL
Sbjct: 1035 FVDSLYL 1041

Length = 1041
>gnl|CDD|221998 pfam13234, rRNA_proc-arch, rRNA-processing arch domain Back     alignment and domain information
>gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|240518 cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain in Mtr4 globular domain Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 931
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 100.0
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 100.0
COG45811041 Superfamily II RNA helicase [DNA replication, reco 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PF08148180 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
PTZ00110545 helicase; Provisional 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK13767876 ATP-dependent helicase; Provisional 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG1201814 Lhr Lhr-like helicases [General function predictio 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
KOG0327397 consensus Translation initiation factor 4F, helica 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 100.0
KOG0334997 consensus RNA helicase [RNA processing and modific 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
KOG4284 980 consensus DEAD box protein [Transcription] 100.0
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
PHA02558501 uvsW UvsW helicase; Provisional 100.0
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 100.0
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 100.0
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK09401 1176 reverse gyrase; Reviewed 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
PF13234268 rRNA_proc-arch: rRNA-processing arch domain; PDB: 100.0
COG1205851 Distinct helicase family with a unique C-terminal 100.0
KOG0354746 consensus DEAD-box like helicase [General function 100.0
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.98
PRK13766773 Hef nuclease; Provisional 99.98
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.97
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.97
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.97
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.97
PRK14701 1638 reverse gyrase; Provisional 99.97
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.97
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.96
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.96
PRK04914956 ATP-dependent helicase HepA; Validated 99.96
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.96
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.96
PRK05580679 primosome assembly protein PriA; Validated 99.96
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.96
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.95
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.95
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.95
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.95
PRK09694878 helicase Cas3; Provisional 99.95
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.94
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.94
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.93
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.92
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.91
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 99.91
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 99.9
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.89
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.89
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.88
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.88
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.88
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.86
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.86
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 99.85
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.84
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 99.84
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.83
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.83
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 99.82
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.82
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.81
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.81
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.8
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.79
PRK05298652 excinuclease ABC subunit B; Provisional 99.78
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.78
COG4096875 HsdR Type I site-specific restriction-modification 99.77
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 99.76
smart00487201 DEXDc DEAD-like helicases superfamily. 99.74
KOG1123776 consensus RNA polymerase II transcription initiati 99.73
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.72
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.71
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.69
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.65
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.64
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 99.63
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.62
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 99.62
KOG0387923 consensus Transcription-coupled repair protein CSB 99.61
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.58
COG4889 1518 Predicted helicase [General function prediction on 99.57
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.57
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.57
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 99.52
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.51
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.51
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.5
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.48
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 99.46
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.45
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 99.43
PRK14873665 primosome assembly protein PriA; Provisional 99.4
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.39
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.39
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.37
CHL00122870 secA preprotein translocase subunit SecA; Validate 99.36
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.32
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.31
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 99.3
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 99.29
smart0049082 HELICc helicase superfamily c-terminal domain. 99.26
KOG1002791 consensus Nucleotide excision repair protein RAD16 99.17
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 99.13
PF02399824 Herpes_ori_bp: Origin of replication binding prote 99.03
KOG4439901 consensus RNA polymerase II transcription terminat 99.03
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 98.99
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 98.97
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.92
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.92
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 98.81
KOG09211282 consensus Dosage compensation complex, subunit MLE 98.8
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 98.76
COG0610962 Type I site-specific restriction-modification syst 98.65
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.38
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 98.34
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.29
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 98.27
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 98.22
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 98.2
PRK15483986 type III restriction-modification system StyLTI en 98.17
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.13
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.12
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 98.02
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 98.0
KOG1803649 consensus DNA helicase [Replication, recombination 97.94
PRK10536262 hypothetical protein; Provisional 97.84
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.83
PF1324576 AAA_19: Part of AAA domain 97.75
KOG2340698 consensus Uncharacterized conserved protein [Funct 97.75
COG3421812 Uncharacterized protein conserved in bacteria [Fun 97.73
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.69
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.68
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 97.58
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 97.55
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.53
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 97.52
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.47
COG3587985 Restriction endonuclease [Defense mechanisms] 97.44
PRK13889988 conjugal transfer relaxase TraA; Provisional 97.4
PRK06526254 transposase; Provisional 97.39
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.36
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.3
PRK138261102 Dtr system oriT relaxase; Provisional 97.22
PRK04296190 thymidine kinase; Provisional 97.15
smart00382148 AAA ATPases associated with a variety of cellular 97.14
PRK08181269 transposase; Validated 97.09
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 97.08
TIGR00376637 DNA helicase, putative. The gene product may repre 96.94
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 96.89
KOG10161387 consensus Predicted DNA helicase, DEAD-box superfa 96.87
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 96.83
PHA02533534 17 large terminase protein; Provisional 96.71
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.55
PRK07952244 DNA replication protein DnaC; Validated 96.36
PRK08116268 hypothetical protein; Validated 96.26
PRK08727233 hypothetical protein; Validated 96.26
PRK08903227 DnaA regulatory inactivator Hda; Validated 96.22
KOG18051100 consensus DNA replication helicase [Replication, r 96.2
PRK12377248 putative replication protein; Provisional 96.17
PRK09183259 transposase/IS protein; Provisional 96.14
KOG1131755 consensus RNA polymerase II transcription initiati 96.09
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 96.05
PRK08084235 DNA replication initiation factor; Provisional 96.03
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 96.01
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 96.0
cd01124187 KaiC KaiC is a circadian clock protein primarily f 96.0
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 96.0
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 95.99
PRK06893229 DNA replication initiation factor; Validated 95.99
PRK05642234 DNA replication initiation factor; Validated 95.98
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 95.92
PRK06921266 hypothetical protein; Provisional 95.91
smart00492141 HELICc3 helicase superfamily c-terminal domain. 95.88
PRK11054684 helD DNA helicase IV; Provisional 95.81
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 95.8
PRK14974336 cell division protein FtsY; Provisional 95.79
COG1484254 DnaC DNA replication protein [DNA replication, rec 95.72
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 95.7
PRK00411394 cdc6 cell division control protein 6; Reviewed 95.69
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 95.68
PRK06835329 DNA replication protein DnaC; Validated 95.68
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 95.63
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 95.61
PRK147121623 conjugal transfer nickase/helicase TraI; Provision 95.61
COG2256436 MGS1 ATPase related to the helicase subunit of the 95.6
PHA03333752 putative ATPase subunit of terminase; Provisional 95.59
PRK12402337 replication factor C small subunit 2; Reviewed 95.57
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 95.48
PTZ001121164 origin recognition complex 1 protein; Provisional 95.47
KOG0298 1394 consensus DEAD box-containing helicase-like transc 95.46
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 95.4
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 95.31
PRK00149450 dnaA chromosomal replication initiation protein; R 95.28
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 95.2
TIGR00362405 DnaA chromosomal replication initiator protein Dna 95.15
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 95.11
smart00491142 HELICc2 helicase superfamily c-terminal domain. 95.08
PRK11773721 uvrD DNA-dependent helicase II; Provisional 95.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 94.99
PRK137091747 conjugal transfer nickase/helicase TraI; Provision 94.98
PHA03368738 DNA packaging terminase subunit 1; Provisional 94.93
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 94.93
PRK05973237 replicative DNA helicase; Provisional 94.88
PHA00729226 NTP-binding motif containing protein 94.79
PRK04195482 replication factor C large subunit; Provisional 94.78
PRK12422445 chromosomal replication initiation protein; Provis 94.77
PRK08533230 flagellar accessory protein FlaH; Reviewed 94.75
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 94.75
PF13173128 AAA_14: AAA domain 94.67
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 94.65
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 94.65
COG1702348 PhoH Phosphate starvation-inducible protein PhoH, 94.64
PRK08769319 DNA polymerase III subunit delta'; Validated 94.61
TIGR02928365 orc1/cdc6 family replication initiation protein. M 94.57
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 94.54
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 94.54
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 94.47
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 94.4
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 94.33
PTZ00293211 thymidine kinase; Provisional 94.23
PLN03025319 replication factor C subunit; Provisional 94.21
PRK14087450 dnaA chromosomal replication initiation protein; P 94.19
PRK08939306 primosomal protein DnaI; Reviewed 94.19
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 94.17
PF00004132 AAA: ATPase family associated with various cellula 94.13
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 94.1
PRK14088440 dnaA chromosomal replication initiation protein; P 94.08
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 93.97
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 93.95
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 93.93
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 93.91
PF13871278 Helicase_C_4: Helicase_C-like 93.9
COG4626546 Phage terminase-like protein, large subunit [Gener 93.87
PRK04328249 hypothetical protein; Provisional 93.85
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 93.84
TIGR02688449 conserved hypothetical protein TIGR02688. Members 93.84
PRK05707328 DNA polymerase III subunit delta'; Validated 93.84
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 93.76
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 93.74
PRK06067234 flagellar accessory protein FlaH; Validated 93.74
PRK13833323 conjugal transfer protein TrbB; Provisional 93.67
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 93.64
CHL00181287 cbbX CbbX; Provisional 93.61
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 93.57
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 93.55
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 93.53
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 93.53
PRK09112351 DNA polymerase III subunit delta'; Validated 93.52
PRK11823446 DNA repair protein RadA; Provisional 93.51
PHA02544316 44 clamp loader, small subunit; Provisional 93.44
TIGR00064272 ftsY signal recognition particle-docking protein F 93.43
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 93.42
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 93.38
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 93.31
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 93.29
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 93.24
PRK13342413 recombination factor protein RarA; Reviewed 93.21
PRK13894319 conjugal transfer ATPase TrbB; Provisional 93.21
TIGR00767415 rho transcription termination factor Rho. Members 93.12
PRK14086617 dnaA chromosomal replication initiation protein; P 93.1
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 93.03
PRK10416318 signal recognition particle-docking protein FtsY; 92.9
PF05707193 Zot: Zonular occludens toxin (Zot); InterPro: IPR0 92.78
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 92.75
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 92.74
PRK06964342 DNA polymerase III subunit delta'; Validated 92.73
PHA00350399 putative assembly protein 92.72
KOG2028554 consensus ATPase related to the helicase subunit o 92.72
cd00983325 recA RecA is a bacterial enzyme which has roles in 92.68
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 92.65
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 92.61
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 92.61
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 92.57
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 92.5
PRK09376416 rho transcription termination factor Rho; Provisio 92.48
cd01393226 recA_like RecA is a bacterial enzyme which has rol 92.38
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 92.37
PRK08506472 replicative DNA helicase; Provisional 92.3
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 92.25
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 92.22
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 92.17
PRK13341725 recombination factor protein RarA/unknown domain f 92.17
PRK13851344 type IV secretion system protein VirB11; Provision 92.1
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 92.01
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 92.01
COG2255332 RuvB Holliday junction resolvasome, helicase subun 91.98
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 91.92
PRK06090319 DNA polymerase III subunit delta'; Validated 91.89
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 91.84
PRK06871325 DNA polymerase III subunit delta'; Validated 91.84
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 91.81
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 91.81
COG0593408 DnaA ATPase involved in DNA replication initiation 91.81
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 91.75
PRK00440319 rfc replication factor C small subunit; Reviewed 91.73
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 91.73
PRK00771437 signal recognition particle protein Srp54; Provisi 91.64
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 91.56
COG0470325 HolB ATPase involved in DNA replication [DNA repli 91.5
COG3973747 Superfamily I DNA and RNA helicases [General funct 91.44
PRK06904472 replicative DNA helicase; Validated 91.4
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 91.39
PRK06620214 hypothetical protein; Validated 91.3
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 91.28
TIGR02974329 phageshock_pspF psp operon transcriptional activat 91.27
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 91.21
PRK14949944 DNA polymerase III subunits gamma and tau; Provisi 91.12
COG1221403 PspF Transcriptional regulators containing an AAA- 91.12
PRK09361225 radB DNA repair and recombination protein RadB; Pr 91.11
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 91.08
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 91.05
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 91.02
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 90.98
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 90.96
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 90.93
PRK07471365 DNA polymerase III subunit delta'; Validated 90.9
PRK11331459 5-methylcytosine-specific restriction enzyme subun 90.89
COG2109198 BtuR ATP:corrinoid adenosyltransferase [Coenzyme m 90.85
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 90.7
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 90.62
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 90.52
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 90.5
PF05729166 NACHT: NACHT domain 90.46
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 90.43
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 90.39
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 90.39
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 90.16
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 90.15
PRK07004460 replicative DNA helicase; Provisional 90.12
COG11971139 Mfd Transcription-repair coupling factor (superfam 90.04
PRK04841903 transcriptional regulator MalT; Provisional 90.02
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 90.01
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 90.0
PRK07414178 cob(I)yrinic acid a,c-diamide adenosyltransferase; 89.84
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 89.81
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 89.76
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 89.72
PRK07399314 DNA polymerase III subunit delta'; Validated 89.69
PRK10436462 hypothetical protein; Provisional 89.69
PRK05748448 replicative DNA helicase; Provisional 89.57
PRK07940394 DNA polymerase III subunit delta'; Validated 89.55
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 89.54
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 89.47
PHA03372668 DNA packaging terminase subunit 1; Provisional 89.46
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 89.39
COG1202830 Superfamily II helicase, archaea-specific [General 89.38
PRK08760476 replicative DNA helicase; Provisional 89.15
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 89.13
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 89.1
cd01128249 rho_factor Transcription termination factor rho is 89.08
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 89.0
CHL00176638 ftsH cell division protein; Validated 88.94
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 88.87
PHA02542473 41 41 helicase; Provisional 88.8
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 88.62
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 88.6
PF12846304 AAA_10: AAA-like domain 88.6
TIGR02012321 tigrfam_recA protein RecA. This model describes or 88.58
PRK08840464 replicative DNA helicase; Provisional 88.52
PRK03992389 proteasome-activating nucleotidase; Provisional 88.41
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 88.4
TIGR02237209 recomb_radB DNA repair and recombination protein R 88.37
PRK09087226 hypothetical protein; Validated 88.36
PRK12608380 transcription termination factor Rho; Provisional 88.22
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 88.21
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 88.08
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 88.07
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 88.03
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 87.98
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 87.94
PRK07993334 DNA polymerase III subunit delta'; Validated 87.94
TIGR00763775 lon ATP-dependent protease La. This protein is ind 87.93
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 87.9
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 87.9
PRK09165497 replicative DNA helicase; Provisional 87.8
cd01394218 radB RadB. The archaeal protein radB shares simila 87.79
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 87.65
TIGR01817534 nifA Nif-specific regulatory protein. This model r 87.65
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 87.61
PRK10865857 protein disaggregation chaperone; Provisional 87.53
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 87.53
PRK08699325 DNA polymerase III subunit delta'; Validated 87.42
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 87.37
PF02534469 T4SS-DNA_transf: Type IV secretory system Conjugat 87.22
TIGR00665434 DnaB replicative DNA helicase. This model describe 87.18
PRK09354349 recA recombinase A; Provisional 87.05
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 87.03
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 86.96
PF00154322 RecA: recA bacterial DNA recombination protein; In 86.95
PRK08006471 replicative DNA helicase; Provisional 86.82
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 86.82
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 86.8
cd01126384 TraG_VirD4 The TraG/TraD/VirD4 family are bacteria 86.78
PF14617252 CMS1: U3-containing 90S pre-ribosomal complex subu 86.56
KOG2228408 consensus Origin recognition complex, subunit 4 [R 86.55
PRK11608326 pspF phage shock protein operon transcriptional ac 86.49
TIGR00595505 priA primosomal protein N'. All proteins in this f 86.44
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 86.42
KOG2004906 consensus Mitochondrial ATP-dependent protease PIM 86.24
TIGR03743634 SXT_TraD conjugative coupling factor TraD, SXT/TOL 86.23
PHA00012361 I assembly protein 86.07
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 86.02
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 86.01
PRK05595444 replicative DNA helicase; Provisional 85.99
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 85.95
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 85.88
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 85.83
KOG0701 1606 consensus dsRNA-specific nuclease Dicer and relate 85.66
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 85.65
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 85.49
PRK05022509 anaerobic nitric oxide reductase transcription reg 85.45
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 85.45
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 85.3
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 85.22
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 85.15
PRK10867433 signal recognition particle protein; Provisional 85.12
TIGR03819340 heli_sec_ATPase helicase/secretion neighborhood AT 85.05
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 85.0
TIGR02533486 type_II_gspE general secretory pathway protein E. 84.99
PRK13695174 putative NTPase; Provisional 84.98
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 84.78
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 84.76
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 84.3
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 83.87
COG0210655 UvrD Superfamily I DNA and RNA helicases [DNA repl 83.62
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 83.55
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 83.47
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 83.24
COG0630312 VirB11 Type IV secretory pathway, VirB11 component 83.24
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 83.05
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 83.01
cd01127410 TrwB Bacterial conjugation protein TrwB, ATP bindi 82.99
PRK05636505 replicative DNA helicase; Provisional 82.84
PRK14873665 primosome assembly protein PriA; Provisional 82.81
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 82.77
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 82.77
PF10412386 TrwB_AAD_bind: Type IV secretion-system coupling p 82.72
COG3972660 Superfamily I DNA and RNA helicases [General funct 82.71
PF02572172 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase 82.64
PRK05580679 primosome assembly protein PriA; Validated 82.55
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 82.53
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 82.36
PRK13897606 type IV secretion system component VirD4; Provisio 82.25
TIGR03754643 conj_TOL_TraD conjugative coupling factor TraD, TO 82.2
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 82.13
KOG20361011 consensus Predicted P-loop ATPase fused to an acet 82.11
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-201  Score=1640.94  Aligned_cols=886  Identities=61%  Similarity=0.998  Sum_probs=848.5

Q ss_pred             CCccceeeecCCC--CCCCChhhhccccCCCCCchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHH
Q 002359           35 TRSCVHEVAVPSG--YALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAI  112 (931)
Q Consensus        35 ~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i  112 (931)
                      +.+|.|++++|++  |.|+.+         +.....+++.|||+|+|||..||.++.++++|+|+|||++|||++|+|||
T Consensus        95 ~~~c~HeVavP~~~dY~p~~~---------~~~~~~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAI  165 (1041)
T KOG0948|consen   95 REGCRHEVAVPPNYDYTPLLP---------KIFGKPPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAI  165 (1041)
T ss_pred             cccceeeeecCCccccCcccc---------ccCCCCcccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHH
Confidence            5699999999977  777545         44567788999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccc
Q 002359          113 AMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH  192 (931)
Q Consensus       113 ~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH  192 (931)
                      +.+++.++||||++|++||+||+|++|...|++||++|||+++||++.|+|||+|+|++|||++++.++++.||||||+|
T Consensus       166 A~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH  245 (1041)
T KOG0948|consen  166 AMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH  245 (1041)
T ss_pred             HHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCcc
Q 002359          193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK  272 (931)
Q Consensus       193 ~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~  272 (931)
                      ||.|.+||.+|++.|+++|+++++++||||+||+.+|++|+..++++||+|+++++||+||+||+||.++.++|+++|++
T Consensus       246 YMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek  325 (1041)
T KOG0948|consen  246 YMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEK  325 (1041)
T ss_pred             hccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhchhhHHHHHHHHHhhhcCCCcC--CCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhc
Q 002359          273 EQFREDNFVKLQDTFLKQKIGGRRE--NGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS  350 (931)
Q Consensus       273 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~  350 (931)
                      ++|+.++|.++++.+.+....++..  +++ .++...++.......+.++++.+...+..|+|||++|++.|+.+|..++
T Consensus       326 ~~FrednF~~am~~l~~~~~~~~~~~~~~k-~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~  404 (1041)
T KOG0948|consen  326 GKFREDNFQKAMSVLRKAGESDGKKKANKK-GRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMS  404 (1041)
T ss_pred             cccchHHHHHHHHHhhccCCCccccccccc-cccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhc
Confidence            9999999999999998766654321  111 1111122234556789999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhc
Q 002359          351 KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM  430 (931)
Q Consensus       351 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~  430 (931)
                      ++++++++|+..+..+|.+++..|+++|+.+||++.++++|+|||++|||||.|..|+.|+.+|++|.+++||||+||++
T Consensus       405 kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsi  484 (1041)
T KOG0948|consen  405 KLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSI  484 (1041)
T ss_pred             cCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc------------
Q 002359          431 GLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG------------  498 (931)
Q Consensus       431 GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~------------  498 (931)
                      |+|||+.+|||+...+|||..+|++|+++|+||+|||||+|.|.+|+||++.++.+++...+.|++|.            
T Consensus       485 GLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtY  564 (1041)
T KOG0948|consen  485 GLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTY  564 (1041)
T ss_pred             ccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998            


Q ss_pred             ----------CCChHHHHHhhHHHHHhhccchhHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhcCh
Q 002359          499 ----------QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRP  568 (931)
Q Consensus       499 ----------~~~~e~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~  568 (931)
                                +++|++|+++||+|||+..++|.+++++.++++++..+.++++..+..|+.+..++..+++.++..+.+|
T Consensus       565 nMiLNLlRvEei~pe~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i~~E~~v~~yh~l~~ql~~~~k~i~~~~~~P  644 (1041)
T KOG0948|consen  565 NMILNLLRVEEISPEYMLERSFHQFQNYKALPDIEEKLKQLEEELDSINIPNEEEVKEYHDLELQLEKYGKDIREVITHP  644 (1041)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence                      7889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhcccCCceEEEecCCccceeEEEEEeecCCCCc-------------ceec-----------------C----CCCC
Q 002359          569 ERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAG-------------VGTL-----------------P----SRGG  614 (931)
Q Consensus       569 ~~~~~~l~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-----------------~----~~~~  614 (931)
                      .++++||++||+|.++.++.+|+|||++++.+..++.             ++++                 |    +.+.
T Consensus       645 ~~~l~fLq~GRlV~v~~g~~d~~WGvvv~f~k~~~~~~~~~~~~p~e~Y~vdvll~~~~~~~~~~~~~~~~p~~~~ek~~  724 (1041)
T KOG0948|consen  645 KYCLPFLQPGRLVKVKVGGDDFFWGVVVNFIKRKNSSKNSDQVGPHESYIVDVLLHCSTESSPVGAKKVNVPPRPNEKGE  724 (1041)
T ss_pred             chhcccccCCceEEEecCCCCCceeEEEEEEeccCCCCCccccCCCcceEEEEEeeeeccccccccCcCCCCCCCCCCCc
Confidence            9999999999999999999999999999988764321             4444                 1    5778


Q ss_pred             eEEEeecCCccceeeeeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 002359          615 GYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF  694 (931)
Q Consensus       615 ~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  694 (931)
                      +.++++.++.|.+||++++.+|+++++.+.|..+.+.+.++.++||.|+|++||++||+|.+.++.++.++++.++.++.
T Consensus       725 ~~vvpv~l~~i~~is~~r~~iP~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~~~~~~k~e~lE~~l~  804 (1041)
T KOG0948|consen  725 MEVVPVLLTLIDAISSIRLYIPKDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEFKKLVKKIESLEARLE  804 (1041)
T ss_pred             eEEEeeeHHHHhhhhHHHhcCcccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCccchhhhhhhcccCCch
Q 002359          695 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDE  773 (931)
Q Consensus       695 ~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lgyid~~~~vt~kGrvA~ei~s~~e  773 (931)
                      .||.|+. ..++.++.+.++..|..++++|+.+++..++..+++|+++|++|||||||++.+++|.+||||||||+|+||
T Consensus       805 ~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~KGrvACEIsSgDE  884 (1041)
T KOG0948|consen  805 SHPLHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVIELKGRVACEISSGDE  884 (1041)
T ss_pred             cCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEcceEEEEecccch
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhCCCCCCCHHHHHHHhhccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCCc
Q 002359          774 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP  853 (931)
Q Consensus       774 LlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  853 (931)
                      |+||||||+|.|++|+|+|+||||||||||+++++.+.+.++|+.++.+|++.|++|++|+.+|++++++++|+++ |+|
T Consensus       885 LlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide~~Yv~s-Fkp  963 (1041)
T KOG0948|consen  885 LLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECKLEIDEEDYVES-FKP  963 (1041)
T ss_pred             HHHHHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHh-cCh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCcccccCCCC
Q 002359          854 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL  931 (931)
Q Consensus       854 ~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~i~RdiVf~~sLYl  931 (931)
                      .||+|||+||+|+||++||++|++|||+||||+|||+||||||++||++|||.+|++||++++.+||||||||+||||
T Consensus       964 ~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~~~~ikRDIVFAaSLYL 1041 (1041)
T KOG0948|consen  964 ELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEAIKKIKRDIVFAASLYL 1041 (1041)
T ss_pred             HHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhceeehhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA00350 putative assembly protein Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PHA02542 41 41 helicase; Provisional Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion Back     alignment and domain information
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily Back     alignment and domain information
>PHA00012 I assembly protein Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein Back     alignment and domain information
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK13897 type IV secretion system component VirD4; Provisional Back     alignment and domain information
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query931
3l9o_A1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 0.0
2xgj_A1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 0.0
4a4z_A 997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 7e-62
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 9e-42
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 8e-23
2va8_A715 Dna Repair Helicase Hel308 Length = 715 5e-29
2p6r_A702 Crystal Structure Of Superfamily 2 Helicase Hel308 5e-24
2zj2_A720 Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt 1e-22
4f92_B 1724 Brr2 Helicase Region S1087l Length = 1724 9e-16
4f92_B1724 Brr2 Helicase Region S1087l Length = 1724 1e-06
4f91_B 1724 Brr2 Helicase Region Length = 1724 9e-16
4f91_B1724 Brr2 Helicase Region Length = 1724 1e-06
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure 
Iteration: 1

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/972 (44%), Positives = 603/972 (62%), Gaps = 87/972 (8%)
Query: 34   LTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEM---AKTYSFELDPFQRVSVACLER 90
            L+    H+VA+P  Y  T           P+   +    A+TY F LDPFQ  +++C++R
Sbjct: 150  LSHQVRHQVALPPNYDYT-----------PIAEHKRVNEARTYPFTLDPFQDTAISCIDR 198
Query: 91   NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150
             ESVLVSAHTSAGKT VAEYAIA + ++KQRVIYTSP+KALSNQKYREL  EF DVGLMT
Sbjct: 199  GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 258
Query: 151  GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210
            GD+T++P+A CLVMTTEILR MLYRGSEV++EVAWVIFDE+HYM+D+ERGVVWEE+II L
Sbjct: 259  GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 318
Query: 211  PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVD 270
            P  ++ VFLSAT+ NA +FAEWIC +H QPCH+VYT+FRPTPLQHY+FP  G G+YLVVD
Sbjct: 319  PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVD 378
Query: 271  EKEQFREDNFVKLQDTFLKQKIGGRRENXXX-----XXXXXXXXXXXXXXDIFKIVKMIM 325
            EK  FRE+NF K   +   Q IG    +                      DI+KIVKMI 
Sbjct: 379  EKSTFREENFQKAMASISNQ-IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW 437
Query: 326  ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIE 385
            ++K+ PVIVFSFS+R+CE+ A+ MSKLDFN+ +EK+ + ++F NA+  L E DR LP I+
Sbjct: 438  KKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIK 497
Query: 386  LMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK 445
             +LPLL+RGI +HHSGLLP++KE++E+LFQEG +K LFATETF++GLNMPAKTVVFT+V+
Sbjct: 498  HILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 557
Query: 446  KWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMV------LEGQ 499
            KWDG   R++  GEYIQMS            I I+M+DE+ME    K MV      L+  
Sbjct: 558  KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSA 617
Query: 500  F----------------TAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAE 543
            F                + E ++++SF QFQ   ++P + KK+++L+++   ++   E  
Sbjct: 618  FHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEEN 677
Query: 544  VAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRL--IKVREXXXXXXXXXXXXXXXX 601
            V EYH+++  I    + +   +T P   L +L  GRL  I V                  
Sbjct: 678  VKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRI 737
Query: 602  XXXXXGTLPSRGGGYIVPVQLPLISTLSKIRL------SVPPDLRPLDARQSILLAV--- 652
                   + +    YIV V +  +   S + L      ++P  +RP +  +  + AV   
Sbjct: 738  NKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIPI 797
Query: 653  --------------------------------QELESRFPQGLPKLNPVKDMKIEDPEVV 680
                                            +E+  RFP G+P L+PVK+MKIED + +
Sbjct: 798  TLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFL 857
Query: 681  DLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKFRDEL 739
             L+ +I+ L  KL ++PL  S    ++   + RK +++ +++QLK K+ +SQ     D+L
Sbjct: 858  KLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDL 917
Query: 740  KNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASC 799
            + R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L   Q AAL SC
Sbjct: 918  RRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSC 977
Query: 800  FIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVI 859
            F   ++  E   L+ ELA+PL+ ++E A KIA+I  + K+EV   +YVES  R  LM+V+
Sbjct: 978  FAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRHELMEVV 1036
Query: 860  YCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESL 919
            Y W +GATF ++ +MTD++EGS+IR  +RL+E + +L   A  +G  +L++K  A  + +
Sbjct: 1037 YEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLI 1096
Query: 920  RRGIMFSNSLYL 931
             R I+ + SLYL
Sbjct: 1097 HRDIVSAGSLYL 1108
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 Back     alignment and structure
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query931
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 0.0
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 0.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 0.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 1e-126
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 6e-97
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 1e-96
3b6e_A216 Interferon-induced helicase C domain-containing P; 1e-19
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 1e-15
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 6e-13
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
1yks_A440 Genome polyprotein [contains: flavivirin protease 4e-08
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 2e-07
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 2e-07
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 2e-07
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 4e-07
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 5e-07
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 5e-06
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 1e-05
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 1e-04
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 2e-04
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 2e-04
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 3e-04
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 4e-04
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
 Score =  932 bits (2409), Expect = 0.0
 Identities = 450/996 (45%), Positives = 638/996 (64%), Gaps = 81/996 (8%)

Query: 7    AGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYN 66
               R+             +     +  L+    H+VA+P  Y  T               
Sbjct: 25   EASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTP--------IAEHKR 76

Query: 67   GEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126
               A+TY F LDPFQ  +++C++R ESVLVSAHTSAGKT VAEYAIA + ++KQRVIYTS
Sbjct: 77   VNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTS 136

Query: 127  PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186
            P+KALSNQKYREL  EF DVGLMTGD+T++P+A CLVMTTEILR MLYRGSEV++EVAWV
Sbjct: 137  PIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWV 196

Query: 187  IFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246
            IFDE+HYM+D+ERGVVWEE+II LP  ++ VFLSAT+ NA +FAEWIC +H QPCH+VYT
Sbjct: 197  IFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYT 256

Query: 247  DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMA 306
            +FRPTPLQHY+FP  G G+YLVVDEK  FRE+NF K   + +  +IG    +  + G+  
Sbjct: 257  NFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS-ISNQIGDDPNSTDSRGKKG 315

Query: 307  KGGSGSGG-----SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361
            +   G         DI+KIVKMI ++K+ PVIVFSFS+R+CE+ A+ MSKLDFN+ +EK+
Sbjct: 316  QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375

Query: 362  TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKA 421
             + ++F NA+  L E DR LP I+ +LPLL+RGI +HHSGLLP++KE++E+LFQEG +K 
Sbjct: 376  ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 435

Query: 422  LFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM 481
            LFATETF++GLNMPAKTVVFT+V+KWDG   R++  GEYIQMSGRAGRRG DDRGI I+M
Sbjct: 436  LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 495

Query: 482  VDEQMEMNTLKDMV------LEGQF----------------TAEHVIKNSFHQFQYEKAL 519
            +DE+ME    K MV      L+  F                + E ++++SF QFQ   ++
Sbjct: 496  IDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISV 555

Query: 520  PDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGR 579
            P + KK+++L+++   ++   E  V EYH+++  I    + +   +T P   L +L  GR
Sbjct: 556  PVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGR 615

Query: 580  LIKVREGGTD-WGWGVVVNVVKK------------------------------------- 601
            L+++   G D +GWG VV+  K+                                     
Sbjct: 616  LVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPF 675

Query: 602  -PSAGVGTLPSRGGGY----IVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELE 656
             P+   G  P+  G      ++P+ L  I ++  +RL +P D+R    ++++  +++E+ 
Sbjct: 676  NPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVN 735

Query: 657  SRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAE 715
             RFP G+P L+PVK+MKIED + + L+ +I+ L  KL ++PL  S   E     + RK +
Sbjct: 736  RRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHD 795

Query: 716  VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELL 775
            ++ +++QLK K+ +SQ     D+L+ R RVL++LG    + +++LKGR AC I +GDELL
Sbjct: 796  LHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELL 855

Query: 776  VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQN 835
            +TEL+FNG FN+L   Q AAL SCF   ++  E   L+ ELA+PL+ ++E A KIA+I  
Sbjct: 856  LTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMK 915

Query: 836  ECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 895
            + K+EV   +YVES  R  LM+V+Y W +GATF ++ +MTD++EGS+IR  +RL+E + +
Sbjct: 916  DSKIEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKE 974

Query: 896  LRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
            L   A  +G  +L++K  A  + + R I+ + SLYL
Sbjct: 975  LVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1010
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query931
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 100.0
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 100.0
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 100.0
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 100.0
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 100.0
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
1yks_A440 Genome polyprotein [contains: flavivirin protease 100.0
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 100.0
3h1t_A590 Type I site-specific restriction-modification syst 99.98
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.98
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.97
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.95
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.95
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.95
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.94
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.94
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.94
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.94
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.93
3bor_A237 Human initiation factor 4A-II; translation initiat 99.93
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.93
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.93
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.93
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.93
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.93
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.93
3jux_A822 Protein translocase subunit SECA; protein transloc 99.93
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.93
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.92
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.92
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.9
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.87
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 99.87
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.85
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.84
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.83
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.82
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.82
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.81
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.81
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.81
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.79
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.78
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.78
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.78
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.78
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.75
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.58
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.6
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.51
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.57
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 98.29
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 98.2
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 98.05
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.93
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.88
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.76
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 97.53
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 97.35
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 97.17
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.85
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 96.81
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 96.77
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.73
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.73
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 96.59
2kjq_A149 DNAA-related protein; solution structure, NESG, st 96.27
2v1u_A387 Cell division control protein 6 homolog; DNA repli 96.17
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 96.06
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 96.05
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 96.03
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 96.01
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 95.99
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 95.96
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 95.89
3bos_A242 Putative DNA replication factor; P-loop containing 95.58
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 95.55
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 95.49
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 95.49
2qgz_A308 Helicase loader, putative primosome component; str 95.3
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 95.3
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 95.22
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 95.2
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 95.01
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 94.96
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 94.93
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 94.9
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 94.79
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 94.77
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 94.69
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 94.57
3co5_A143 Putative two-component system transcriptional RES 94.48
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 94.37
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 94.32
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 94.25
1ojl_A304 Transcriptional regulatory protein ZRAR; response 93.68
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 93.64
2chg_A226 Replication factor C small subunit; DNA-binding pr 93.55
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 93.49
2cvh_A220 DNA repair and recombination protein RADB; filamen 93.33
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 93.32
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 93.21
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 92.93
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 92.87
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 92.82
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 92.81
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 92.76
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 92.67
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 92.64
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 92.58
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 92.56
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 92.46
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 92.46
2r6a_A454 DNAB helicase, replicative helicase; replication, 92.38
1u94_A356 RECA protein, recombinase A; homologous recombinat 92.36
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 92.21
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 92.17
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 92.15
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 91.88
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 91.71
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 91.64
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 91.6
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 91.6
1xp8_A366 RECA protein, recombinase A; recombination, radior 91.5
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 91.39
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 91.38
2gno_A305 DNA polymerase III, gamma subunit-related protein; 91.37
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 91.23
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 90.94
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 90.83
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 90.8
3pvs_A447 Replication-associated recombination protein A; ma 90.7
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 90.33
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 90.28
2z43_A324 DNA repair and recombination protein RADA; archaea 90.26
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 90.16
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 89.43
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 89.3
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 89.26
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 88.82
3cmu_A2050 Protein RECA, recombinase A; homologous recombinat 88.79
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 88.28
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 87.66
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 87.65
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 87.38
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 86.81
2fna_A357 Conserved hypothetical protein; structural genomic 86.72
2chq_A319 Replication factor C small subunit; DNA-binding pr 86.68
3io5_A333 Recombination and repair protein; storage dimer, i 86.46
3hjh_A483 Transcription-repair-coupling factor; MFD, mutatio 86.15
1vma_A306 Cell division protein FTSY; TM0570, structural gen 85.89
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 85.67
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 85.15
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 85.13
3cmw_A1706 Protein RECA, recombinase A; homologous recombinat 84.61
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 84.59
1e9r_A437 Conjugal transfer protein TRWB; coupling protein, 84.09
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 84.04
3i4u_A270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 83.88
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 83.78
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 83.57
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 83.36
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 83.11
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 82.95
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 82.79
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 82.77
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 82.41
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 82.19
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.3e-143  Score=1343.55  Aligned_cols=890  Identities=50%  Similarity=0.880  Sum_probs=801.3

Q ss_pred             ccccCCccceeeecCCCC--CCCChhhhccccCCCCCchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHH
Q 002359           31 QRNLTRSCVHEVAVPSGY--ALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVA  108 (931)
Q Consensus        31 ~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~  108 (931)
                      ......+|.|.+++|+++  .++.+          ...+.....|+|+|+|+|.+|++.+.+|++++|+||||||||++|
T Consensus        49 ~~~~~~~~~h~~~~p~~~~~~~~~~----------~~~p~~~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva  118 (1010)
T 2xgj_A           49 KVRLSHQVRHQVALPPNYDYTPIAE----------HKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVA  118 (1010)
T ss_dssp             EEEEEEEEEEEEECCTTCCCCCGGG----------CCCSSCSCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHH
T ss_pred             ccccccCceeeecCCCCcccCCCCc----------ccChhhHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHH
Confidence            344467899999999995  33322          111223778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEE
Q 002359          109 EYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIF  188 (931)
Q Consensus       109 ~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vVi  188 (931)
                      ++++...+.++.++||++|+++|++|++++|.+.++++|+++|+.+.+++++|+|||||+|.++++++...++++++|||
T Consensus       119 ~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVVi  198 (1010)
T 2xgj_A          119 EYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIF  198 (1010)
T ss_dssp             HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEE
T ss_pred             HHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             eccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEe
Q 002359          189 DEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLV  268 (931)
Q Consensus       189 DEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~  268 (931)
                      ||||++.+++||..|+.++..++.++|+++||||++|..++++|++...+.++.++..+.+|+|+++++++.+...++.+
T Consensus       199 DEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~  278 (1010)
T 2xgj_A          199 DEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLV  278 (1010)
T ss_dssp             ETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEE
T ss_pred             echhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeee
Confidence            99999999999999999999999999999999999999999999999888899999999999999999998777788888


Q ss_pred             eCccchhchhhHHHHHHHHHhhhcCCCcC--CCCCCCCccCCCCCC--CCCCHHHHHHHHHHcCCCcEEEEecCHHHHHH
Q 002359          269 VDEKEQFREDNFVKLQDTFLKQKIGGRRE--NGKASGRMAKGGSGS--GGSDIFKIVKMIMERKFQPVIVFSFSRRECEQ  344 (931)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~  344 (931)
                      ++..+.+...++.+.+..+.......+..  ..+......+++...  ....+..++..+...+..++||||+|++.|+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~  358 (1010)
T 2xgj_A          279 VDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEE  358 (1010)
T ss_dssp             ECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHH
T ss_pred             eccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHH
Confidence            88888888777777654443211100000  000000000000000  14456778888887777899999999999999


Q ss_pred             HHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEe
Q 002359          345 HAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFA  424 (931)
Q Consensus       345 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLva  424 (931)
                      ++..|...++....+...+..++.+.+..++..|+.++++..+.+++.+||++|||||++.+|+.+++.|++|.++||||
T Consensus       359 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVA  438 (1010)
T 2xgj_A          359 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA  438 (1010)
T ss_dssp             HHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc------
Q 002359          425 TETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG------  498 (931)
Q Consensus       425 T~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~------  498 (931)
                      |+++++|||+|++++||+...+||+..++|.++.+|+||+|||||.|.+..|.||+++++..+...+.+++.+.      
T Consensus       439 T~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s  518 (1010)
T 2xgj_A          439 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDS  518 (1010)
T ss_dssp             EGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCC
T ss_pred             ehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCccccc
Confidence            99999999999999999888889999999999999999999999999988999999999877777888877665      


Q ss_pred             ----------------CCChHHHHHhhHHHHHhhccchhHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHH
Q 002359          499 ----------------QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLM  562 (931)
Q Consensus       499 ----------------~~~~e~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  562 (931)
                                      +++++++++++|.+|+.....+.++.++.+++.++..+....+.++.+|+.++.++...++.++
T Consensus       519 ~f~~~~~~ilnll~~~~~~~e~ll~rsf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  598 (1010)
T 2xgj_A          519 AFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVR  598 (1010)
T ss_dssp             CCCCCHHHHHHHHHSSSCCHHHHHHHCHHHHHHHHHHHHHHHHC-CHHHHHHSSCCCSCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence                            3578999999999999999999999999999999999988888999999999999999999999


Q ss_pred             HHhcChhhHHhcccCCceEEEec-CCccceeEEEEEeecCC-CCc------------ceec-------------------
Q 002359          563 SEITRPERVLYYLGSGRLIKVRE-GGTDWGWGVVVNVVKKP-SAG------------VGTL-------------------  609 (931)
Q Consensus       563 ~~~~~~~~~~~~l~~g~~i~~~~-~~~~~~~~~~~~~~~~~-~~~------------~~~~-------------------  609 (931)
                      .+..++.+.+.||++||+|.++. ++..++||||+++.+.. ++.            ++++                   
T Consensus       599 ~~~~~~~~~~~~l~~Gr~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  678 (1010)
T 2xgj_A          599 QVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPT  678 (1010)
T ss_dssp             HHHTSHHHHGGGCCTTEEEEEEETTTEEEEEEEEEEEEECCCSSCTTCCCCTTTTEEEEEEEEEEETTSCGGGCCTTCCC
T ss_pred             HHHhccHHHHhhcCCCcEEEEEcCCCCcceeEEEEecccccCCCccccccccCCceeEEEEeeccccccccccccccccc
Confidence            99999999999999999999998 56679999999975331 100            2211                   


Q ss_pred             ------C----CCCCeEEEeecCCccceeeeeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHH
Q 002359          610 ------P----SRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEV  679 (931)
Q Consensus       610 ------~----~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (931)
                            |    .++.+.++++++++|..|+.+++.+|+++++...|+.+.+.+.++.+++++++|.+||+++|++++.++
T Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  758 (1010)
T 2xgj_A          679 LPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDF  758 (1010)
T ss_dssp             CCTTCCBCCTTCCEEEEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCCHHH
T ss_pred             cccccCCCCCCcCCceEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhhccccHHH
Confidence                  1    355688899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCcc
Q 002359          680 VDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVV  758 (931)
Q Consensus       680 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lgyid~~~~v  758 (931)
                      .+...+++.+++++.+||||.| ++++|+++++++.+++++++++++++++.+++.+++||++|++||++|||||++++|
T Consensus       759 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v  838 (1010)
T 2xgj_A          759 LKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDII  838 (1010)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCCB
T ss_pred             HHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCcc
Confidence            9999999999999999999999 999999999999999999999999999988898999999999999999999988999


Q ss_pred             chhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002359          759 QLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECK  838 (931)
Q Consensus       759 t~kGrvA~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~  838 (931)
                      |+||||||||+++||||+|||||+|+|++|+|+||||+|||||||++.++.|.++++|.+++.++++++++|+++|.+|+
T Consensus       839 ~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  918 (1010)
T 2xgj_A          839 ELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSK  918 (1010)
T ss_dssp             CHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999888889999999999999999999999999999


Q ss_pred             CCCChhhhhhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHh
Q 002359          839 LEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASES  918 (931)
Q Consensus       839 ~~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~  918 (931)
                      +++++++|+++ |+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|+++
T Consensus       919 ~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~~~  997 (1010)
T 2xgj_A          919 IEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKL  997 (1010)
T ss_dssp             CCCCHHHHHHT-SCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCChhHhccc-CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Confidence            99999999999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcccccCCCC
Q 002359          919 LRRGIMFSNSLYL  931 (931)
Q Consensus       919 i~RdiVf~~sLYl  931 (931)
                      |||||||++||||
T Consensus       998 i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A          998 IHRDIVSAGSLYL 1010 (1010)
T ss_dssp             HSCGGGGCCCC-C
T ss_pred             ccCCeEecccccC
Confidence            9999999999997
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 931
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 1e-29
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 1e-19
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 2e-15
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 8e-04
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 4e-12
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 6e-12
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 2e-11
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 1e-10
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 9e-10
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 3e-09
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 1e-08
d2eyqa3233 c.37.1.19 (A:546-778) Transcription-repair couplin 1e-06
d2g9na1218 c.37.1.19 (A:21-238) Initiation factor 4a {Human ( 2e-06
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 2e-05
d1s2ma1206 c.37.1.19 (A:46-251) Putative ATP-dependent RNA he 2e-04
d1qdea_212 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 3e-04
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 0.002
d1veca_206 c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma 0.002
d1t6na_207 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 0.003
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 0.004
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  115 bits (287), Expect = 1e-29
 Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 319 KIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376
           K  +++ E   +   V+VF  +RR  E+ A+ +S +     E +   + + +     ++ 
Sbjct: 28  KFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSR 87

Query: 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436
           +         +   +++G A HH+GLL   + +VE  F+ G +K + AT T A G+N+PA
Sbjct: 88  K---------LAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPA 138

Query: 437 KTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496
           + V+  ++ ++DG   + I   EY QM+GRAGR G D+RG  II+V ++     +K  + 
Sbjct: 139 RRVIVRSLYRFDGY-SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIF 197
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 233 Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query931
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.96
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.96
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.95
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.95
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.94
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.94
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.94
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.93
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.93
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.93
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.92
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.89
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.88
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.87
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.86
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.85
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.85
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.84
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.83
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.83
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.83
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.82
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.82
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.77
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.77
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.76
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.75
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.74
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.74
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.7
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.61
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.57
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.53
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.52
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.47
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.37
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.23
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.21
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.1
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.1
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.99
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.64
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.06
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.97
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 97.92
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.73
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.32
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 97.01
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.34
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 96.26
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 95.76
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 95.52
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 95.21
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 94.74
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 94.64
d1ls1a2207 GTPase domain of the signal sequence recognition p 94.46
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 94.21
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 94.08
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 93.41
d1j8yf2211 GTPase domain of the signal sequence recognition p 93.21
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 93.19
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 93.06
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 92.93
d2qy9a2211 GTPase domain of the signal recognition particle r 92.84
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 92.54
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 92.07
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 91.8
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 91.8
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 91.52
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 91.4
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 91.38
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 91.36
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 91.35
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 91.27
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 91.17
d1okkd2207 GTPase domain of the signal recognition particle r 90.05
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 89.73
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 88.68
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 88.61
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 88.46
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 88.35
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 88.23
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 87.73
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 87.12
d1vmaa2213 GTPase domain of the signal recognition particle r 87.09
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 86.92
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 85.07
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 84.85
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 84.63
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 83.43
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 82.74
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 80.91
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 80.22
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=8.1e-33  Score=301.13  Aligned_cols=280  Identities=17%  Similarity=0.127  Sum_probs=191.6

Q ss_pred             HhcCCcEEEEcCCCCCcHHHHHHHHHH-HHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002359           88 LERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT  166 (931)
Q Consensus        88 l~~g~~vlv~apTGsGKTl~~~l~i~~-~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp  166 (931)
                      +.+|++++|.||||||||++|+.+++. .+.++.++||++||++|++|++++|+.....+.....+........++++||
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~t~   85 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMCH   85 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCBCCC--------CCCSEEEEEH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEeecccCccccccCCc
Confidence            467899999999999999998777665 4567899999999999999999999887665444444445566788999999


Q ss_pred             HHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh--cCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002359          167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF--LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV  244 (931)
Q Consensus       167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~--l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~  244 (931)
                      +.+..+.... ..+.++++||+||||++.++  +......+..  .....+++++|||+++...           .    
T Consensus        86 ~~l~~~~~~~-~~~~~~~~vViDE~H~~~~~--~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~-----------~----  147 (305)
T d2bmfa2          86 ATFTMRLLSP-IRVPNYNLIIMDEAHFTDPA--SIAARGYISTRVEMGEAAGIFMTATPPGSRD-----------P----  147 (305)
T ss_dssp             HHHHHHHTSS-SCCCCCSEEEEESTTCCSHH--HHHHHHHHHHHHHHTSCEEEEECSSCTTCCC-----------S----
T ss_pred             HHHHHHHhcC-ccccceeEEEeeeeeecchh--hHHHHHHHHHhhccccceEEEeecCCCccee-----------e----
Confidence            9998776643 45789999999999999754  2223333322  2457899999999975431           0    


Q ss_pred             ecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHH
Q 002359          245 YTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMI  324 (931)
Q Consensus       245 ~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l  324 (931)
                       ......|.......         ....                                       .....    ... 
T Consensus       148 -~~~~~~~~~~~~~~---------~~~~---------------------------------------~~~~~----~~~-  173 (305)
T d2bmfa2         148 -FPQSNAPIMDEERE---------IPER---------------------------------------SWNSG----HEW-  173 (305)
T ss_dssp             -SCCCSSCEEEEECC---------CCCS---------------------------------------CCSSC----CHH-
T ss_pred             -ecccCCcceEEEEe---------ccHH---------------------------------------HHHHH----HHH-
Confidence             00011111000000         0000                                       00000    011 


Q ss_pred             HHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCH
Q 002359          325 MERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLP  404 (931)
Q Consensus       325 ~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~  404 (931)
                      ......+++|||++++.|+.++..|.+.++.                                       +..+||++.+
T Consensus       174 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~---------------------------------------~~~l~~~~~~  214 (305)
T d2bmfa2         174 VTDFKGKTVWFVPSIKAGNDIAACLRKNGKK---------------------------------------VIQLSRKTFD  214 (305)
T ss_dssp             HHSSCSCEEEECSCHHHHHHHHHHHHHHTCC---------------------------------------CEECCTTCHH
T ss_pred             HHhhCCCEEEEeccHHHHHHHHHHHHhCCCC---------------------------------------EEEeCCcChH
Confidence            1234578999999999999999999875554                                       4778999866


Q ss_pred             HHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEe-----cceecCCCCC------cccCHHHHHHhhhccCCCCCC
Q 002359          405 VIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT-----AVKKWDGDSH------RYIGSGEYIQMSGRAGRRGKD  473 (931)
Q Consensus       405 ~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~-----~~~~~d~~~~------~~~s~~~y~Qr~GRaGR~G~~  473 (931)
                      ..+    ..|++|..+++|||+++++|+|++...+|..     ....||+..+      .|.|..+|+||+|||||.|..
T Consensus       215 ~~~----~~~~~~~~~~lvaT~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~  290 (305)
T d2bmfa2         215 SEY----IKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKN  290 (305)
T ss_dssp             HHG----GGGGTSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSC
T ss_pred             HHH----hhhhccchhhhhhhHHHHhcCCCCccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCC
Confidence            544    4688999999999999999999986665422     2224555432      478999999999999999987


Q ss_pred             CceEEEEEe
Q 002359          474 DRGICIIMV  482 (931)
Q Consensus       474 ~~g~~ii~~  482 (931)
                      +.+..+...
T Consensus       291 ~~~~~~~~~  299 (305)
T d2bmfa2         291 ENDQYIYMG  299 (305)
T ss_dssp             CCEEEEECS
T ss_pred             ceEEEEECC
Confidence            666544433
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure