Citrus Sinensis ID: 002389

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------93
MYKESNGTNSNRNFSRRFLSSSGHFNLSILELRDKISNGSCHVEGKISKQHKVQPSDCVLSSSPQQSCRFTEMDYRGSSERKKNSSGRKKFNEECLNGEKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSIIEIGKPIYYALEKGLKSKTKSVCRDSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWIPL
ccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHccHHHHHHcccEEEEEcccccccccccccccccEEEEccccEEEEEccccccEEEEEEEcccEEEEEEccccEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEccccEEEEEccccEEEEEEEccEEEEEEEcccccEEEcccccccccccccEEEEcccccEEEEEEEcccEEEEEEEccccEEEEEEccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccEEEEEEccccEEEEccc
ccHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHcHccccccHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccEEcccHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccccEEEEEEccccccEEEEEEEcccEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEEccccEEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccEEEEEccccEEEEEEEccEEEEEcccccEEEEEcccccEEEEEcccEEEEcccccEEEEEEEcccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEEcccEEEEEcccccEEEEEEccccEEEEEEccccEEEEEEEcccEEEEEccccEEEEEEcc
mykesngtnsnrnFSRRFLsssghfnlSILELRDkisngschvegkiskqhkvqpsdcvlssspqqscrftemdyrgsserkknssgrkkfNEECLNGEKDAKSELLEIIEKAISSLffsgdlrkcnKDYVVEVTTLYKMLnsktgvkydMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLikpspteiktlelLPTLVEVICTSklykgklesvrltppaaSLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDtlenttgksvfTEEAMQVILKAVASEESSTMQLLSSFILsniggtfswtgepYTVAWLVKKAGLNSSWLQNMIRNFDWLDQslqdrgvdswSSKIAKSIIEIGKPIYYALEKGLKSKTKSVCRDSLTTIAWLSFevskspnsvrhSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAAdyylpnisrisCVHTQILEASHKCSGAVTALIYYKGLlcsgfsdgsikmWDIKKQSAMLVWDVKEHrkavtsfslfepgesllsgsadkTIGVWQMVQRKLELIEVIATkepirkldtygktifastqghrmkvidssrTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNnvereikapfkswrlqskpinslvVYKDWLYSasssvegsnikewrrhrkpqisiapekgttIQAMAVVEDFIYLNYNSSASSLQIWLRGTqqkvgrisagsKITSLLTANDIVLCgtetglikgwipl
mykesngtnsnrnfsRRFLSSSGHFNLSILELRDKISNGSCHVEGKIskqhkvqpsdcvlssspqqscrftemdyrgsserkknssgrkkfneeclngEKDAKSELLEIIEKAISslffsgdlrkcNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKlykgklesvrltpPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSIIEIGKPIYYALEKGLKSKTKSVCRDSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTsfslfepgesllsgsadkTIGVWQMVQRKLELIEViatkepirkldtygktifastqghrmkvidssrtlkdiyrskgiksmsvVQGKIYIGCMDSSIQELAVSNNVEREIKapfkswrlqskpiNSLVVYKDWLYSASSsvegsnikewrrhrkpqisiapekgttIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCgtetglikgwipl
MYKEsngtnsnrnfsrrflsssgHFNLSILELRDKISNGSCHVEGKISKQHKVQPSDCVLSSSPQQSCRFTEMDYRGSSERKKNSSGRKKFNEECLNGEKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINIlhilklslqqlqsdyqllaanlllqldtlentTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSIIEIGKPIYYALEKGLKSKTKSVCRDSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGleleerllACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWIPL
***********************HFNLSILELRDKI*********************************************************************LLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSIIEIGKPIYYALEKGLKSKTKSVCRDSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKGMQKLIRS**GVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS**********W*******ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWI**
**************************LSILELRDK***********************************************************************LEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGL******************L**RGVDSWSSKIAKSIIEIGKPIY************SVCRDSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWIPL
*********SNRNFSRRFLSSSGHFNLSILELRDKISNGSCHVEGK*********************CRFT*********************EECLNGEKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSIIEIGKPIYYALEKGLKSKTKSVCRDSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWIPL
*****N*****RNFSRRF***S*HFNLSILELRDKI*******************************C*FT***************************EKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSIIEIGKPIYYALEKGLKSKTKSVCRDSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWIPL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYKESNGTNSNRNFSRRFLSSSGHFNLSILELRDKISNGSCHVEGKISKQHKVQPSDCVLSSSPQQSCRFTEMDYRGSSERKKNSSGRKKFNEECLNGEKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSIIEIGKPIYYALEKGLKSKTKSVCRDSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWIPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query929 2.2.26 [Sep-21-2011]
C6L7U11485 Putative E3 ubiquitin-pro N/A no 0.856 0.536 0.284 1e-74
D1FP571485 Putative E3 ubiquitin-pro N/A no 0.856 0.536 0.284 1e-71
D1FP531488 Putative E3 ubiquitin-pro N/A no 0.928 0.579 0.262 3e-65
P90648732 Myosin heavy chain kinase yes no 0.238 0.303 0.271 2e-08
Q6FT96711 Mitochondrial division pr yes no 0.104 0.136 0.291 1e-05
Q6DRF9387 WD repeat-containing prot yes no 0.146 0.351 0.235 5e-05
A7TNS8669 CCR4-associated factor 4 N/A no 0.117 0.162 0.260 8e-05
P87177 922 Uncharacterized WD repeat yes no 0.094 0.095 0.333 9e-05
P36130643 CCR4-associated factor 4 yes no 0.114 0.164 0.267 0.0001
A6ZZZ8645 CCR4-associated factor 4 N/A no 0.114 0.164 0.267 0.0001
>sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2 Back     alignment and function desciption
 Score =  281 bits (720), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 238/836 (28%), Positives = 434/836 (51%), Gaps = 40/836 (4%)

Query: 114  ISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVI 173
            ISSL  S +L +C ++ V+++  L K   +   +   + +  I+  L+  +SAS+   V+
Sbjct: 664  ISSLCTSENLPEC-EEAVLKIARLLKDSKTNPQIHSYLSKPTIINGLVEILSASRNREVL 722

Query: 174  RASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLE 233
            R S+ IL+ +I  ++SV E +         LAT LK  + EAA+LIY ++P   ++   E
Sbjct: 723  RTSIYILSELIFTDDSVAETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLSAHE 782

Query: 234  LLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLC 293
            L+P+LV+VI          + V + P  A++ I+E  +   D  + +++ +++ S   + 
Sbjct: 783  LIPSLVDVIQNKNEELDDFQLV-IDPKDAAIAILEQTLMGGDEYSRSLNASSVISANGIP 841

Query: 294  GLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIAL 353
             L  V   + +E   S+ ++L+ C+Q +  C+  ++    ++P+  L  SG        +
Sbjct: 842  TL--VKYLERMEGRRSVVSVLLCCMQAEKSCKNLIANRIELSPVLELFHSGNDSVRGTCV 899

Query: 354  EFFHEILRIPRSSAID-LLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLE 412
            EF  E++++ R ++ + +L  I  EG  + +H   + LQ    ++QL  A+LLLQLD L 
Sbjct: 900  EFLSELVQLNRRTSCNQILHTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLA 959

Query: 413  NTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAG 472
                 S++ EEA++ +++A+  ++ S  Q+ +   L  + G  S +G+ YT AWL+K AG
Sbjct: 960  EPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHISSSGKSYTEAWLLKIAG 1019

Query: 473  LNSSW-----LQNMIRNFDWLDQSLQDR--GVDSWSSKIAKSII--EIGKPIYYALEKGL 523
             +  +     ++ + ++ + L ++++D    ++SW  +IA  +   E G  I+ ALE+ L
Sbjct: 1020 FDQPYNALMKVEQLGQHDNDLIETMEDEKNALNSWQKRIASVLCNHENGS-IFKALEECL 1078

Query: 524  KSKTKSVCRDSLTTIAWLSFEVSKSPNS-VRHSACQILLDGVEQFLHPGLELEERLLACL 582
            KS +  + +  L    WL+  +   P++ VR  A + LL+ V   L     LEE++LA L
Sbjct: 1079 KSNSLKMAKSCLVLATWLTHMLYTLPDTGVRDVARKSLLEEVINVLQSSKNLEEKILATL 1138

Query: 583  CIYNYASGKGMQKLIR-SSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVH--- 638
             +  + S     + +R  ++ +  +LRRL   + +A ++ K     + N+  +       
Sbjct: 1139 ALKTFISDPSTHEALRVYAKSIYRTLRRLKKYSVVAVDIMKV----ILNLKSVDVTELWS 1194

Query: 639  -TQILEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSF 697
              +++E     +G V +++Y  G + SG +DG+IK+WD +K+   ++ +  EH KAVT  
Sbjct: 1195 CKEVVELDLSSNGEVLSMVYLNGQVLSGHTDGTIKVWDARKRIPRVIQETHEHTKAVT-- 1252

Query: 698  SLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMK 757
            SL   G+ L SGS DKTI VW +    ++ I+V   KE + +L    K     +QG  +K
Sbjct: 1253 SLCSSGDRLYSGSLDKTIRVWTIKSDGIKCIDVYDIKEAVHELAANDKLACYVSQGTGVK 1312

Query: 758  VIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWR--L 815
            V + S   K I  SK +KS++V   K+Y GC   SIQE+ +S          F   R  L
Sbjct: 1313 VFNWSEAPKLINFSKYVKSLAVAGDKLYCGCSGYSIQEVDLSTYTSNSF---FTGTRKLL 1369

Query: 816  QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 875
              + I+SL ++ D+L++  SSV+ +  K +   +K  +  +   G  I  +A+  DFI+ 
Sbjct: 1370 GKQTIHSLQIHDDYLFACGSSVDATAGKIFSLSQKMVVG-SLSTGLDIHRIAINSDFIFA 1428

Query: 876  NYNSSASSLQIWLRGTQQKVGRIS-AG--SKITSLLTAND--IVLCGTETGLIKGW 926
               +   ++++WL+    +V  I  AG  +KITSL++  D  ++  G+  G I+ W
Sbjct: 1429 --GTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDVDGMMLFVGSSDGKIQVW 1482
Putative E3 ubiquitin-protein ligase involved in the rhizobial infection process. Plays an important role in the early steps of infection thread formation and in growth and differentiation of nodules.
Lotus japonicus (taxid: 34305)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|D1FP57|LIN2_LOTJA Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN PE=1 SV=1 Back     alignment and function description
>sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula GN=LIN PE=2 SV=1 Back     alignment and function description
>sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1 Back     alignment and function description
>sp|Q6FT96|MDV1_CANGA Mitochondrial division protein 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MDV1 PE=3 SV=1 Back     alignment and function description
>sp|Q6DRF9|WDR55_DANRE WD repeat-containing protein 55 OS=Danio rerio GN=wdr55 PE=2 SV=2 Back     alignment and function description
>sp|A7TNS8|CAF4_VANPO CCR4-associated factor 4 homolog OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=CAF4 PE=3 SV=1 Back     alignment and function description
>sp|P87177|YB1C_SCHPO Uncharacterized WD repeat-containing protein C3D6.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3D6.12 PE=1 SV=1 Back     alignment and function description
>sp|P36130|CAF4_YEAST CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAF4 PE=1 SV=3 Back     alignment and function description
>sp|A6ZZZ8|CAF4_YEAS7 CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain YJM789) GN=CAF4 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query929
359477261 1339 PREDICTED: putative E3 ubiquitin-protein 0.997 0.692 0.660 0.0
296083364 1274 unnamed protein product [Vitis vinifera] 0.997 0.727 0.660 0.0
255551783 1357 nucleotide binding protein, putative [Ri 0.973 0.666 0.686 0.0
147796407 1378 hypothetical protein VITISV_010257 [Viti 0.992 0.669 0.657 0.0
224130530 1305 predicted protein [Populus trichocarpa] 0.977 0.695 0.644 0.0
449432864 1339 PREDICTED: putative E3 ubiquitin-protein 0.908 0.630 0.648 0.0
449515345 1313 PREDICTED: putative E3 ubiquitin-protein 0.903 0.638 0.646 0.0
356558169 1302 PREDICTED: uncharacterized protein LOC10 0.980 0.699 0.596 0.0
356532569 1362 PREDICTED: uncharacterized protein LOC10 0.980 0.668 0.603 0.0
334185156 1264 transducin/WD-40 repeat-containing prote 0.867 0.637 0.630 0.0
>gi|359477261|ref|XP_002269707.2| PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/937 (66%), Positives = 762/937 (81%), Gaps = 10/937 (1%)

Query: 1    MYKESNGTNSNRNFSRRFLSSSGHFNLSILELRDKISNG--SCHVEGKISKQHKVQPSDC 58
            +++E N  N  + FS RF  S    NLSILEL  + S+   SCH + + + + +++P D 
Sbjct: 405  LHEEINEANIKKLFSGRFSRSLNDLNLSILELGVEKSHTLWSCHAQEETTWR-RLEPDDF 463

Query: 59   ----VLSSSPQQSCRFTEMDY-RGSSERKK-NSSGRKKFNEECLNGEKDAKSELLEIIEK 112
                 L+++  Q+  F +M++ +G+  RKK NSS RK  +E CL+ EKD+  ELL  ++K
Sbjct: 464  QILDCLAATSLQNYMFAQMEHNQGNGARKKHNSSRRKNLHEVCLHPEKDSHGELLRALDK 523

Query: 113  AISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETV 172
            AIS L+FS    K ++D  VEVTT+Y+ML +KTGVKY +L+D IL+QLL++IS SK+E +
Sbjct: 524  AISKLWFSEGQGKYDEDSSVEVTTIYEMLTNKTGVKYTLLKDAILDQLLSSISTSKKEGI 583

Query: 173  IRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTL 232
            +RASVSIL TII  N+SVI+DIKKKGL+L  LA ALKRNV EAA LIYLI PSPTEIKTL
Sbjct: 584  VRASVSILLTIIAGNKSVIDDIKKKGLQLGHLANALKRNVYEAATLIYLINPSPTEIKTL 643

Query: 233  ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVL 292
            ELLPTL+ V+CTS  Y G   S+  TPPAASLMIIE L+ AFDYATN+MHLA I+SP+VL
Sbjct: 644  ELLPTLMNVVCTSNNYAGGPASLP-TPPAASLMIIEALIAAFDYATNSMHLAEISSPQVL 702

Query: 293  CGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIA 352
             GLLDVAR+ NLEELI LATILVKC+QFDGQCR Y+S+FT +AP   LL+S ++R  +IA
Sbjct: 703  SGLLDVARNNNLEELIPLATILVKCMQFDGQCRNYISQFTPMAPFIYLLRSNKRRVKLIA 762

Query: 353  LEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLE 412
            LEFFHEILR+PRSSAI +LQ++ KEG+INI+HIL   LQQ Q+++QLLAANLLLQLD LE
Sbjct: 763  LEFFHEILRMPRSSAISVLQQMKKEGSINIMHILLPCLQQSQAEHQLLAANLLLQLDQLE 822

Query: 413  NTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAG 472
            +++G+S+F EEAM+V+L+++  EE+S  Q+LS+FILSN+GGT+SWTGEPYTVAWLVKKAG
Sbjct: 823  DSSGRSMFREEAMEVLLESMVCEENSATQILSAFILSNLGGTYSWTGEPYTVAWLVKKAG 882

Query: 473  LNSSWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSIIEIGKPIYYALEKGLKSKTKSVCR 532
            L S + +NMIRNFDWLDQSLQD G D+W SKI +SII+ G P+++ALEKGLKSK + V R
Sbjct: 883  LTSLYHRNMIRNFDWLDQSLQDTGTDTWCSKIGRSIIKGGIPLFHALEKGLKSKVRRVSR 942

Query: 533  DSLTTIAWLSFEVSKSPNSVRHSACQILLDGVEQFLHPGLELEERLLACLCIYNYASGKG 592
            D LT IAWL +E++ +PN +R+SAC+ILL G+EQFLHPGL+LEERLLACLCIYNY SGKG
Sbjct: 943  DCLTAIAWLGYEIATTPNELRYSACEILLSGIEQFLHPGLDLEERLLACLCIYNYTSGKG 1002

Query: 593  MQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAV 652
            MQKLI  SEGVRESL RLSN+TWMAEEL K ADY+LP  S ISCVHTQILE   KCSGAV
Sbjct: 1003 MQKLIHFSEGVRESLGRLSNITWMAEELLKIADYFLPYKSHISCVHTQILEMGRKCSGAV 1062

Query: 653  TALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 712
            TALIYY+G LCSG+SDGSIK+WDIK QSA LV D+KEHRKAVT FS FEPG+SLLSGSAD
Sbjct: 1063 TALIYYRGQLCSGYSDGSIKVWDIKGQSATLVLDIKEHRKAVTCFSHFEPGDSLLSGSAD 1122

Query: 713  KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSK 772
            KTI VWQMV+RK+E  EVI+TKEP++ LDT+G+ IF  T GH +KV D+SR +KDI +SK
Sbjct: 1123 KTIRVWQMVKRKMECTEVISTKEPVQNLDTHGQLIFTVTHGHGVKVFDASRKVKDICKSK 1182

Query: 773  GIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYS 832
             +K + VVQG++YIGCMDSSIQE+ ++   E+EI+AP KSWR+Q++PINS+VVYKDWLYS
Sbjct: 1183 HVKCVRVVQGRLYIGCMDSSIQEVVITRAREQEIRAPAKSWRMQNRPINSIVVYKDWLYS 1242

Query: 833  ASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 892
            AS  VEGSN KEW+RH KPQ+S+ P+KG ++ AM +VEDFIYLN +SS S LQIWLRGTQ
Sbjct: 1243 ASDIVEGSNFKEWKRHSKPQMSMVPDKGASVLAMGIVEDFIYLNCSSSTSILQIWLRGTQ 1302

Query: 893  QKVGRISAGSKITSLLTANDIVLCGTETGLIKGWIPL 929
            QK GR+SAGS+ITSLLTANDIVLCGTE GLIKGWIPL
Sbjct: 1303 QKAGRLSAGSRITSLLTANDIVLCGTEMGLIKGWIPL 1339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083364|emb|CBI23000.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551783|ref|XP_002516937.1| nucleotide binding protein, putative [Ricinus communis] gi|223544025|gb|EEF45551.1| nucleotide binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147796407|emb|CAN65866.1| hypothetical protein VITISV_010257 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130530|ref|XP_002328632.1| predicted protein [Populus trichocarpa] gi|222838614|gb|EEE76979.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449432864|ref|XP_004134218.1| PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515345|ref|XP_004164710.1| PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356558169|ref|XP_003547380.1| PREDICTED: uncharacterized protein LOC100782870 [Glycine max] Back     alignment and taxonomy information
>gi|356532569|ref|XP_003534844.1| PREDICTED: uncharacterized protein LOC100789287 [Glycine max] Back     alignment and taxonomy information
>gi|334185156|ref|NP_001189833.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332640951|gb|AEE74472.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query929
DICTYBASE|DDB_G0289115732 mhkB "myosin heavy chain kinas 0.289 0.367 0.268 1.2e-09
TAIR|locus:2148965 876 TOZ "AT5G16750" [Arabidopsis t 0.290 0.308 0.243 2.1e-06
ZFIN|ZDB-GENE-030131-8414368 pak1ip1 "PAK1 interacting prot 0.203 0.513 0.243 3.8e-05
TAIR|locus:2089855 955 AT3G21540 "AT3G21540" [Arabido 0.086 0.083 0.367 5e-05
SGD|S000001744643 CAF4 "WD40 repeat-containing p 0.114 0.164 0.276 0.0001
TAIR|locus:2032452415 AT1G24130 "AT1G24130" [Arabido 0.304 0.681 0.231 0.0001
UNIPROTKB|Q9NWT1392 PAK1IP1 "p21-activated protein 0.205 0.487 0.243 0.00012
RGD|1565353382 Pak1ip1 "PAK1 interacting prot 0.087 0.212 0.380 0.00015
UNIPROTKB|F1NWB8367 PAK1IP1 "p21-activated protein 0.153 0.389 0.265 0.00037
UNIPROTKB|Q5ZKU8369 PAK1IP1 "p21-activated protein 0.153 0.387 0.265 0.00037
DICTYBASE|DDB_G0289115 mhkB "myosin heavy chain kinase B" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 177 (67.4 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 81/302 (26%), Positives = 139/302 (46%)

Query:   595 KLIRSSEG--VRESLRRLSNV--TWMAEELHKAADYYLPNISRISCVHTQILEASHKCSG 650
             KLI + +G  V   L    N+  T  ++   +  DY   N+    CV T  L+  H+  G
Sbjct:   452 KLIETIKGYHVTSHLCICDNLLFTGCSDNSIRVYDYKSQNME---CVQT--LKG-HE--G 503

Query:   651 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS 710
              V ++ Y    L SG SD SIK+WD+KK     ++ ++ H K V +  L +  + L SGS
Sbjct:   504 PVESICYNDQYLFSGSSDHSIKVWDLKKLRC--IFTLEGHDKPVHTVLLND--KYLFSGS 559

Query:   711 ADKTIGVWQMVQRKLELIEVIATK-EPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY 769
             +DKTI VW +  + LE    + +    ++ L   G+ +F+ +    +KV D  +T +  Y
Sbjct:   560 SDKTIKVWDL--KTLECKYTLESHARAVKTLCISGQYLFSGSNDKTIKVWDL-KTFRCNY 616

Query:   770 RSKG----IKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV 825
               KG    + ++ ++   +Y G  D +I+   V N    E  A  +      + +  +V+
Sbjct:   617 TLKGHTKWVTTICILGTNLYSGSYDKTIR---VWNLKSLECSATLRG---HDRWVEHMVI 670

Query:   826 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQ 885
                 L++AS   + + IK W        +       T+Q +AV ED   +   S   S++
Sbjct:   671 CDKLLFTAS---DDNTIKIWDLETLRCNTTLEGHNATVQCLAVWEDKKCVISCSHDQSIR 727

Query:   886 IW 887
             +W
Sbjct:   728 VW 729
GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA
GO:0031037 "myosin II filament disassembly" evidence=IMP
GO:0005826 "actomyosin contractile ring" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0000910 "cytokinesis" evidence=IMP
GO:0046777 "protein autophosphorylation" evidence=IDA
GO:0045159 "myosin II binding" evidence=IPI
GO:0005524 "ATP binding" evidence=IEA;IC
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA
GO:0016905 "myosin heavy chain kinase activity" evidence=IEA;IDA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016740 "transferase activity" evidence=IEA
GO:0016310 "phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
TAIR|locus:2148965 TOZ "AT5G16750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8414 pak1ip1 "PAK1 interacting protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2089855 AT3G21540 "AT3G21540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000001744 CAF4 "WD40 repeat-containing protein associated with the CCR4-NOT complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NWT1 PAK1IP1 "p21-activated protein kinase-interacting protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1565353 Pak1ip1 "PAK1 interacting protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWB8 PAK1IP1 "p21-activated protein kinase-interacting protein 1-like" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKU8 PAK1IP1 "p21-activated protein kinase-interacting protein 1-like" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033005001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (1232 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query929
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 7e-09
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 5e-07
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 5e-06
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 3e-04
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 4e-04
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information 
 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 52/234 (22%), Positives = 86/234 (36%), Gaps = 41/234 (17%)

Query: 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 720
            L SG SD +I++WD++      V  +  H   V+S +    G  L S S DKTI VW +
Sbjct: 65  YLASGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 721 VQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKG----I 774
              K  L  +    + +        G  + +S+Q   +K+ D  RT K +    G    +
Sbjct: 123 ETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD-LRTGKCVATLTGHTGEV 180

Query: 775 KSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS-----------KPIN 821
            S++      K+     D +I                 K W L +             +N
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTI-----------------KLWDLSTGKCLGTLRGHENGVN 223

Query: 822 SLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 875
           S+    D    AS S +G+ I+ W       +        ++ ++A   D   L
Sbjct: 224 SVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276

Length = 289
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 929
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0293519 consensus WD40 repeat-containing protein [Function 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 100.0
KOG0286343 consensus G-protein beta subunit [General function 99.97
KOG0315311 consensus G-protein beta subunit-like protein (con 99.97
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.96
KOG0295406 consensus WD40 repeat-containing protein [Function 99.96
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.96
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.96
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.96
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.96
KOG0315311 consensus G-protein beta subunit-like protein (con 99.96
KOG0263707 consensus Transcription initiation factor TFIID, s 99.96
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 99.96
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.95
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.95
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.95
KOG0319 775 consensus WD40-repeat-containing subunit of the 18 99.95
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.95
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.95
KOG0286343 consensus G-protein beta subunit [General function 99.95
KOG0645312 consensus WD40 repeat protein [General function pr 99.95
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.94
PLN00181793 protein SPA1-RELATED; Provisional 99.94
KOG0266456 consensus WD40 repeat-containing protein [General 99.94
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.94
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 99.94
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.94
KOG0319 775 consensus WD40-repeat-containing subunit of the 18 99.94
KOG0276 794 consensus Vesicle coat complex COPI, beta' subunit 99.94
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.93
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.93
KOG0263707 consensus Transcription initiation factor TFIID, s 99.93
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.93
KOG0296399 consensus Angio-associated migratory cell protein 99.93
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.93
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 99.92
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.92
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.92
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.92
KOG0306 888 consensus WD40-repeat-containing subunit of the 18 99.92
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.92
KOG0284 464 consensus Polyadenylation factor I complex, subuni 99.91
KOG0295406 consensus WD40 repeat-containing protein [Function 99.91
KOG0643327 consensus Translation initiation factor 3, subunit 99.9
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.9
KOG0301 745 consensus Phospholipase A2-activating protein (con 99.9
KOG0645312 consensus WD40 repeat protein [General function pr 99.9
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.89
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.89
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.89
PLN00181793 protein SPA1-RELATED; Provisional 99.89
KOG0306 888 consensus WD40-repeat-containing subunit of the 18 99.89
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.89
KOG0266456 consensus WD40 repeat-containing protein [General 99.89
KOG0293519 consensus WD40 repeat-containing protein [Function 99.89
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.88
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.88
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.88
KOG0283712 consensus WD40 repeat-containing protein [Function 99.88
KOG0276 794 consensus Vesicle coat complex COPI, beta' subunit 99.88
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.87
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.87
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.87
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.87
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.87
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.87
KOG0296399 consensus Angio-associated migratory cell protein 99.87
KOG0294362 consensus WD40 repeat-containing protein [Function 99.86
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.85
KOG0310 487 consensus Conserved WD40 repeat-containing protein 99.85
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.85
KOG0772 641 consensus Uncharacterized conserved protein, conta 99.85
KOG0283 712 consensus WD40 repeat-containing protein [Function 99.85
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 99.85
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.84
PTZ00420 568 coronin; Provisional 99.84
KOG0289506 consensus mRNA splicing factor [General function p 99.84
KOG0973 942 consensus Histone transcription regulator HIRA, WD 99.84
KOG0308 735 consensus Conserved WD40 repeat-containing protein 99.84
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.84
PTZ00421 493 coronin; Provisional 99.83
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.83
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.83
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.83
KOG0300481 consensus WD40 repeat-containing protein [Function 99.82
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.82
PTZ00420 568 coronin; Provisional 99.82
KOG0308 735 consensus Conserved WD40 repeat-containing protein 99.82
PTZ00421 493 coronin; Provisional 99.81
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.81
KOG0294362 consensus WD40 repeat-containing protein [Function 99.8
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.8
KOG0310 487 consensus Conserved WD40 repeat-containing protein 99.8
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.8
KOG1539 910 consensus WD repeat protein [General function pred 99.8
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.8
KOG0639705 consensus Transducin-like enhancer of split protei 99.8
KOG0641350 consensus WD40 repeat protein [General function pr 99.8
KOG2055514 consensus WD40 repeat protein [General function pr 99.79
KOG0643327 consensus Translation initiation factor 3, subunit 99.78
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.78
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.78
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.78
KOG0301 745 consensus Phospholipase A2-activating protein (con 99.78
KOG0289506 consensus mRNA splicing factor [General function p 99.77
KOG0646 476 consensus WD40 repeat protein [General function pr 99.77
KOG2048 691 consensus WD40 repeat protein [General function pr 99.76
KOG0300481 consensus WD40 repeat-containing protein [Function 99.76
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.76
KOG0973 942 consensus Histone transcription regulator HIRA, WD 99.76
KOG1539 910 consensus WD repeat protein [General function pred 99.75
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.75
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.75
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.75
KOG2096420 consensus WD40 repeat protein [General function pr 99.75
KOG0268 433 consensus Sof1-like rRNA processing protein (conta 99.74
KOG1063 764 consensus RNA polymerase II elongator complex, sub 99.74
KOG1274 933 consensus WD40 repeat protein [General function pr 99.74
KOG0641350 consensus WD40 repeat protein [General function pr 99.73
KOG0321 720 consensus WD40 repeat-containing protein L2DTL [Fu 99.73
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.73
KOG0772 641 consensus Uncharacterized conserved protein, conta 99.73
KOG1274 933 consensus WD40 repeat protein [General function pr 99.73
KOG1273405 consensus WD40 repeat protein [General function pr 99.73
KOG2106 626 consensus Uncharacterized conserved protein, conta 99.72
KOG0646 476 consensus WD40 repeat protein [General function pr 99.71
KOG4283397 consensus Transcription-coupled repair protein CSA 99.71
KOG4328498 consensus WD40 protein [Function unknown] 99.71
KOG0269 839 consensus WD40 repeat-containing protein [Function 99.71
KOG0302440 consensus Ribosome Assembly protein [General funct 99.7
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.69
KOG2096 420 consensus WD40 repeat protein [General function pr 99.69
KOG0267 825 consensus Microtubule severing protein katanin p80 99.68
KOG0321 720 consensus WD40 repeat-containing protein L2DTL [Fu 99.68
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.68
KOG2106 626 consensus Uncharacterized conserved protein, conta 99.67
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 99.67
KOG4378 673 consensus Nuclear protein COP1 [Signal transductio 99.66
KOG1063 764 consensus RNA polymerase II elongator complex, sub 99.66
KOG0269 839 consensus WD40 repeat-containing protein [Function 99.64
KOG0270463 consensus WD40 repeat-containing protein [Function 99.64
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.63
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.63
KOG0270463 consensus WD40 repeat-containing protein [Function 99.62
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.62
KOG1188376 consensus WD40 repeat protein [General function pr 99.62
KOG0267 825 consensus Microtubule severing protein katanin p80 99.62
KOG0302440 consensus Ribosome Assembly protein [General funct 99.61
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.6
KOG2048 691 consensus WD40 repeat protein [General function pr 99.6
COG2319466 FOG: WD40 repeat [General function prediction only 99.59
KOG4378 673 consensus Nuclear protein COP1 [Signal transductio 99.58
KOG0644 1113 consensus Uncharacterized conserved protein, conta 99.58
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.57
COG2319 466 FOG: WD40 repeat [General function prediction only 99.57
PRK11028330 6-phosphogluconolactonase; Provisional 99.56
KOG0639705 consensus Transducin-like enhancer of split protei 99.56
KOG4283397 consensus Transcription-coupled repair protein CSA 99.56
KOG4227 609 consensus WD40 repeat protein [General function pr 99.55
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.55
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.54
KOG1334559 consensus WD40 repeat protein [General function pr 99.54
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.53
KOG2055514 consensus WD40 repeat protein [General function pr 99.53
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.53
KOG4328498 consensus WD40 protein [Function unknown] 99.53
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.52
KOG1445 1012 consensus Tumor-specific antigen (contains WD repe 99.52
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.52
KOG1445 1012 consensus Tumor-specific antigen (contains WD repe 99.51
KOG0303 472 consensus Actin-binding protein Coronin, contains 99.5
KOG2110 391 consensus Uncharacterized conserved protein, conta 99.5
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.49
KOG0649325 consensus WD40 repeat protein [General function pr 99.47
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.45
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.45
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.43
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.43
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.43
KOG1188376 consensus WD40 repeat protein [General function pr 99.42
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.42
KOG1963 792 consensus WD40 repeat protein [General function pr 99.39
KOG0649325 consensus WD40 repeat protein [General function pr 99.39
KOG1273 405 consensus WD40 repeat protein [General function pr 99.39
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.38
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.38
PRK11028330 6-phosphogluconolactonase; Provisional 99.36
KOG0303 472 consensus Actin-binding protein Coronin, contains 99.34
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.34
PRK01742429 tolB translocation protein TolB; Provisional 99.33
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.31
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.31
KOG0771398 consensus Prolactin regulatory element-binding pro 99.3
KOG1272 545 consensus WD40-repeat-containing subunit of the 18 99.28
KOG4227 609 consensus WD40 repeat protein [General function pr 99.27
KOG2394 636 consensus WD40 protein DMR-N9 [General function pr 99.25
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.25
KOG1310 758 consensus WD40 repeat protein [General function pr 99.24
KOG1963 792 consensus WD40 repeat protein [General function pr 99.23
KOG2111346 consensus Uncharacterized conserved protein, conta 99.22
KOG2110 391 consensus Uncharacterized conserved protein, conta 99.2
KOG3881412 consensus Uncharacterized conserved protein [Funct 99.19
KOG0644 1113 consensus Uncharacterized conserved protein, conta 99.19
KOG4497447 consensus Uncharacterized conserved protein WDR8, 99.18
PRK03629429 tolB translocation protein TolB; Provisional 99.17
KOG2111346 consensus Uncharacterized conserved protein, conta 99.16
KOG1334 559 consensus WD40 repeat protein [General function pr 99.12
KOG2321 703 consensus WD40 repeat protein [General function pr 99.11
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 99.11
PRK05137435 tolB translocation protein TolB; Provisional 99.09
KOG1524 737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.09
PRK01742429 tolB translocation protein TolB; Provisional 99.08
PRK04922433 tolB translocation protein TolB; Provisional 99.07
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 99.07
PRK02889427 tolB translocation protein TolB; Provisional 99.04
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.03
KOG1524 737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.03
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.02
KOG0771398 consensus Prolactin regulatory element-binding pro 98.96
KOG1310 758 consensus WD40 repeat protein [General function pr 98.96
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 98.95
KOG2041 1189 consensus WD40 repeat protein [General function pr 98.94
KOG2139445 consensus WD40 repeat protein [General function pr 98.93
KOG2321 703 consensus WD40 repeat protein [General function pr 98.91
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.9
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.88
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 98.87
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 98.87
KOG3881412 consensus Uncharacterized conserved protein [Funct 98.86
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 98.85
KOG4547 541 consensus WD40 repeat-containing protein [General 98.84
PRK04922433 tolB translocation protein TolB; Provisional 98.84
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 98.83
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 98.83
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.81
KOG2315 566 consensus Predicted translation initiation factor 98.8
PRK00178430 tolB translocation protein TolB; Provisional 98.79
PRK03629429 tolB translocation protein TolB; Provisional 98.79
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.79
KOG2139 445 consensus WD40 repeat protein [General function pr 98.79
KOG1272 545 consensus WD40-repeat-containing subunit of the 18 98.74
KOG4497447 consensus Uncharacterized conserved protein WDR8, 98.73
KOG1409404 consensus Uncharacterized conserved protein, conta 98.72
PRK04792448 tolB translocation protein TolB; Provisional 98.72
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.71
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 98.68
PRK05137435 tolB translocation protein TolB; Provisional 98.67
PRK02889427 tolB translocation protein TolB; Provisional 98.65
KOG4547 541 consensus WD40 repeat-containing protein [General 98.65
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 98.65
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.62
KOG0280339 consensus Uncharacterized conserved protein [Amino 98.62
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 98.61
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.6
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 98.59
KOG2394 636 consensus WD40 protein DMR-N9 [General function pr 98.57
PRK01029428 tolB translocation protein TolB; Provisional 98.56
KOG1409 404 consensus Uncharacterized conserved protein, conta 98.55
KOG41901034 consensus Uncharacterized conserved protein [Funct 98.55
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.46
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.44
PLN02919 1057 haloacid dehalogenase-like hydrolase family protei 98.42
PRK00178430 tolB translocation protein TolB; Provisional 98.39
KOG2315 566 consensus Predicted translation initiation factor 98.38
COG5354 561 Uncharacterized protein, contains Trp-Asp (WD) rep 98.38
PRK04792448 tolB translocation protein TolB; Provisional 98.35
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 98.33
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.3
KOG41901034 consensus Uncharacterized conserved protein [Funct 98.29
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.28
KOG0882 558 consensus Cyclophilin-related peptidyl-prolyl cis- 98.28
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 98.25
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.23
KOG4714319 consensus Nucleoporin [Nuclear structure] 98.23
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.23
PF04762 928 IKI3: IKI3 family; InterPro: IPR006849 Members of 98.21
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 98.19
COG4946 668 Uncharacterized protein related to the periplasmic 98.16
KOG2314 698 consensus Translation initiation factor 3, subunit 98.15
KOG4532344 consensus WD40-like repeat containing protein [Gen 98.15
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 98.12
COG4946668 Uncharacterized protein related to the periplasmic 98.11
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 98.11
KOG2695425 consensus WD40 repeat protein [General function pr 98.08
KOG0280339 consensus Uncharacterized conserved protein [Amino 98.08
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.05
KOG3914 390 consensus WD repeat protein WDR4 [Function unknown 98.04
PRK01029428 tolB translocation protein TolB; Provisional 98.02
PLN02919 1057 haloacid dehalogenase-like hydrolase family protei 98.0
PRK04043419 tolB translocation protein TolB; Provisional 97.99
KOG2041 1189 consensus WD40 repeat protein [General function pr 97.98
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 97.98
KOG3914 390 consensus WD repeat protein WDR4 [Function unknown 97.95
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 97.91
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 97.9
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 97.89
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 97.88
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.85
PF04762 928 IKI3: IKI3 family; InterPro: IPR006849 Members of 97.85
KOG4714319 consensus Nucleoporin [Nuclear structure] 97.82
KOG1912 1062 consensus WD40 repeat protein [General function pr 97.78
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 97.74
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 97.73
KOG4532344 consensus WD40-like repeat containing protein [Gen 97.73
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 97.69
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 97.68
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 97.64
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 97.64
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.56
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 97.56
COG5354 561 Uncharacterized protein, contains Trp-Asp (WD) rep 97.54
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 97.53
KOG3621 726 consensus WD40 repeat-containing protein [General 97.53
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 97.5
KOG1912 1062 consensus WD40 repeat protein [General function pr 97.47
KOG0882 558 consensus Cyclophilin-related peptidyl-prolyl cis- 97.44
PRK04043419 tolB translocation protein TolB; Provisional 97.35
COG5170 460 CDC55 Serine/threonine protein phosphatase 2A, reg 97.32
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 97.31
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 97.25
KOG2695425 consensus WD40 repeat protein [General function pr 97.24
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 97.22
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 97.21
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 97.21
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 97.2
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 97.19
PF04841 410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 97.15
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 97.14
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 97.14
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 97.08
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 97.08
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 97.07
KOG2314 698 consensus Translation initiation factor 3, subunit 97.01
PF11768 545 DUF3312: Protein of unknown function (DUF3312); In 96.94
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 96.83
smart0032040 WD40 WD40 repeats. Note that these repeats are per 96.77
PRK02888 635 nitrous-oxide reductase; Validated 96.67
PF04053 443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.65
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 96.62
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 96.6
KOG1008 783 consensus Uncharacterized conserved protein, conta 96.51
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 96.49
PF04053 443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.49
smart0032040 WD40 WD40 repeats. Note that these repeats are per 96.45
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 95.94
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 95.86
PHA02713557 hypothetical protein; Provisional 95.81
PF05804708 KAP: Kinesin-associated protein (KAP) 95.75
PHA02713557 hypothetical protein; Provisional 95.71
KOG3621 726 consensus WD40 repeat-containing protein [General 95.63
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 95.61
COG3386307 Gluconolactonase [Carbohydrate transport and metab 95.61
KOG4640 665 consensus Anaphase-promoting complex (APC), subuni 95.57
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 95.55
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 95.48
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 95.48
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 95.43
KOG2395644 consensus Protein involved in vacuole import and d 95.39
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 95.39
PRK02888 635 nitrous-oxide reductase; Validated 95.34
COG3490366 Uncharacterized protein conserved in bacteria [Fun 95.34
KOG1897 1096 consensus Damage-specific DNA binding complex, sub 95.16
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 95.12
KOG4640 665 consensus Anaphase-promoting complex (APC), subuni 95.08
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 95.06
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 94.92
COG0823425 TolB Periplasmic component of the Tol biopolymer t 94.91
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 94.87
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 94.86
PRK13616591 lipoprotein LpqB; Provisional 94.76
KOG2444238 consensus WD40 repeat protein [General function pr 94.67
COG0823425 TolB Periplasmic component of the Tol biopolymer t 94.65
COG3391381 Uncharacterized conserved protein [Function unknow 94.52
PF08553 794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 93.84
COG3490366 Uncharacterized protein conserved in bacteria [Fun 93.75
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 93.74
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 93.62
COG3391381 Uncharacterized conserved protein [Function unknow 93.43
KOG1008 783 consensus Uncharacterized conserved protein, conta 93.33
PHA03098534 kelch-like protein; Provisional 93.04
PHA03098534 kelch-like protein; Provisional 92.88
KOG2395644 consensus Protein involved in vacuole import and d 92.85
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 92.72
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 92.54
COG3386307 Gluconolactonase [Carbohydrate transport and metab 92.51
PF05804708 KAP: Kinesin-associated protein (KAP) 92.44
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 92.12
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 91.86
KOG4499310 consensus Ca2+-binding protein Regucalcin/SMP30 [I 91.84
COG5276370 Uncharacterized conserved protein [Function unknow 91.82
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 91.7
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 91.67
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 91.42
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.37
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 91.36
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 90.91
PHA02790480 Kelch-like protein; Provisional 89.62
PF14583386 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C 89.5
PHA02790480 Kelch-like protein; Provisional 89.25
KOG2444238 consensus WD40 repeat protein [General function pr 89.02
KOG2280 829 consensus Vacuolar assembly/sorting protein VPS16 88.96
PF14727418 PHTB1_N: PTHB1 N-terminus 88.75
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 88.68
COG3292 671 Predicted periplasmic ligand-binding sensor domain 88.17
PF14655415 RAB3GAP2_N: Rab3 GTPase-activating protein regulat 88.12
PF12234 631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 88.02
COG3823262 Glutamine cyclotransferase [Posttranslational modi 87.7
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 86.06
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 84.57
COG3204316 Uncharacterized protein conserved in bacteria [Fun 84.24
PF12234 631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 84.15
PF05096 264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 82.86
COG5276370 Uncharacterized conserved protein [Function unknow 82.33
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 81.87
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 80.49
KOG4499310 consensus Ca2+-binding protein Regucalcin/SMP30 [I 80.06
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=4e-37  Score=326.21  Aligned_cols=280  Identities=16%  Similarity=0.267  Sum_probs=243.6

Q ss_pred             ceeEEEEEeecCCCCCCEEEEEEeC--CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 002389          635 SCVHTQILEASHKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD  712 (929)
Q Consensus       635 ~~~~t~~l~~~~gH~~~Vtsl~fs~--~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D  712 (929)
                      .|...+.     ||.++|.|+.|++  ..|+||+.|.++|+||..+..  +.++.++|...|.|++|+|||+.|+||+.|
T Consensus       106 rCssS~~-----GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~d  178 (480)
T KOG0271|consen  106 RCSSSIA-----GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKD  178 (480)
T ss_pred             eeccccC-----CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccC
Confidence            3555544     9999999999993  389999999999999999875  489999999999999999999999999999


Q ss_pred             CeEEEEEccCCeEEEEEEeccCCCeEEec-------cCCCEEEEEecCCeEEEEeCCC--ceeeeccC-CCeEEEEEe-C
Q 002389          713 KTIGVWQMVQRKLELIEVIATKEPIRKLD-------TYGKTIFASTQGHRMKVIDSSR--TLKDIYRS-KGIKSMSVV-Q  781 (929)
Q Consensus       713 gtIrIWDl~tg~~~~~~~~~h~~~V~s~s-------~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~-~~V~sla~s-d  781 (929)
                      |+|++||..+|++.-....+|+..|++++       +..+++++++.||.++|||+..  +...+.++ ..|+|+.|- +
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~  258 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE  258 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence            99999999999988888889999999754       4567899999999999999984  55555554 569999998 8


Q ss_pred             CEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC-----------ce--------------------
Q 002389          782 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-----------WL--------------------  830 (929)
Q Consensus       782 g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d-----------~i--------------------  830 (929)
                      |.+++|+.|++|++|+...|...      +.+++|...|+.++.+.+           +.                    
T Consensus       259 gliySgS~DrtIkvw~a~dG~~~------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~  332 (480)
T KOG0271|consen  259 GLIYSGSQDRTIKVWRALDGKLC------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL  332 (480)
T ss_pred             ceEEecCCCceEEEEEccchhHH------HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence            89999999999999999887654      345778888888877632           11                    


Q ss_pred             -----EEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CC
Q 002389          831 -----YSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SK  903 (929)
Q Consensus       831 -----~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~  903 (929)
                           .+++++ ||.++.+|+.. ..+++..+.+|..-|+.+.||||++|+|++|.|..|++||-.+|+.+.+|.+| ..
T Consensus       333 ~~~~erlVSgs-Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~  411 (480)
T KOG0271|consen  333 KDSGERLVSGS-DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA  411 (480)
T ss_pred             ccCcceeEEec-CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce
Confidence                 256655 89999999964 45578889999999999999999999999999999999999999999999999 66


Q ss_pred             eEEEEEc--CCEEEEEECCCcEEEeec
Q 002389          904 ITSLLTA--NDIVLCGTETGLIKGWIP  928 (929)
Q Consensus       904 Vtsvs~d--g~~LaSgs~DG~I~IWdi  928 (929)
                      |+.++|+  .+.|++|+.|.++++|++
T Consensus       412 VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  412 VYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             eEEEEeccCccEEEEcCCCceEEEEEe
Confidence            9999997  559999999999999985

>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG5276 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] Back     alignment and domain information
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>COG5276 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query929
1erj_A393 Crystal Structure Of The C-Terminal Wd40 Domain Of 4e-05
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 720
            L +G  D  I++WDI+ +  +++  ++ H + + S   F  G+ L+SGS D+T+ +W +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
Query: 721 VQRKLEL---IEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDS 761
              +  L   IE   T   +   D  GK I A +    ++V DS
Sbjct: 195 RTGQCSLTLSIEDGVTTVAVSPGD--GKYIAAGSLDRAVRVWDS 236

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query929
3ow8_A321 WD repeat-containing protein 61; structural genomi 100.0
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 100.0
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 100.0
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 100.0
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 100.0
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 100.0
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 100.0
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 100.0
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 100.0
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 100.0
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 100.0
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 100.0
4g56_B357 MGC81050 protein; protein arginine methyltransfera 100.0
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 100.0
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 100.0
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 100.0
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 100.0
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 99.98
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 99.98
2ymu_A577 WD-40 repeat protein; unknown function, two domain 99.98
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 99.98
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 99.97
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 99.97
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 99.97
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 99.97
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 99.97
1nr0_A 611 Actin interacting protein 1; beta propeller, WD40 99.97
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 99.97
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 99.97
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 99.97
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 99.97
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 99.97
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 99.97
4e54_B435 DNA damage-binding protein 2; beta barrel, double 99.97
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 99.97
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 99.97
2ymu_A577 WD-40 repeat protein; unknown function, two domain 99.97
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 99.97
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 99.97
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 99.97
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 99.97
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 99.97
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 99.97
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 99.97
2pm7_B297 Protein transport protein SEC13, protein transport 99.96
3ow8_A321 WD repeat-containing protein 61; structural genomi 99.96
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 99.96
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 99.96
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 99.96
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 99.96
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 99.96
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 99.96
4g56_B357 MGC81050 protein; protein arginine methyltransfera 99.96
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 99.96
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 99.96
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 99.96
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 99.96
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 99.96
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 99.96
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 99.96
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 99.96
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 99.96
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 99.96
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 99.96
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 99.95
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 99.95
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 99.95
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.95
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 99.95
2pm7_B297 Protein transport protein SEC13, protein transport 99.95
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 99.95
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 99.95
3jrp_A379 Fusion protein of protein transport protein SEC13 99.95
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 99.95
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 99.95
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 99.95
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 99.95
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 99.95
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 99.94
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 99.94
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 99.94
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.94
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 99.94
3jrp_A379 Fusion protein of protein transport protein SEC13 99.94
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 99.94
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 99.94
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 99.93
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 99.93
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 99.93
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 99.93
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 99.93
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 99.93
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 99.93
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 99.93
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 99.93
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 99.93
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 99.93
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 99.93
3jro_A 753 Fusion protein of protein transport protein SEC13 99.93
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 99.93
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 99.93
4e54_B435 DNA damage-binding protein 2; beta barrel, double 99.92
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 99.92
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 99.92
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 99.92
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 99.92
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 99.92
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 99.92
2xyi_A430 Probable histone-binding protein CAF1; transcripti 99.92
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 99.92
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 99.92
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 99.91
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 99.91
3jro_A 753 Fusion protein of protein transport protein SEC13 99.91
2j04_A 588 TAU60, YPL007P, hypothetical protein YPL007C; beta 99.9
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 99.9
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 99.9
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 99.89
2vdu_B 450 TRNA (guanine-N(7)-)-methyltransferase- associated 99.87
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 99.86
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 99.86
2j04_A 588 TAU60, YPL007P, hypothetical protein YPL007C; beta 99.86
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 99.86
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 99.84
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 99.84
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 99.81
2xyi_A430 Probable histone-binding protein CAF1; transcripti 99.81
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 99.81
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 99.8
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 99.79
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 99.79
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 99.79
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 99.78
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 99.77
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 99.76
2ecf_A 741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 99.75
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 99.73
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 99.71
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 99.7
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 99.7
3o4h_A 582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 99.69
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 99.69
1xfd_A 723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 99.68
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 99.68
1k32_A 1045 Tricorn protease; protein degradation, substrate g 99.68
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 99.64
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 99.64
2ecf_A 741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 99.63
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 99.63
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 99.62
1k32_A 1045 Tricorn protease; protein degradation, substrate g 99.62
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 99.61
1z68_A 719 Fibroblast activation protein, alpha subunit; sepr 99.6
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 99.6
3o4h_A 582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 99.58
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 99.58
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 99.58
2oit_A 434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 99.58
1xfd_A 723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 99.55
4a5s_A 740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 99.48
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 99.47
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 99.45
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 99.45
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 99.44
3azo_A 662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 99.43
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 99.42
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 99.38
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 99.36
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 99.35
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 99.35
1z68_A 719 Fibroblast activation protein, alpha subunit; sepr 99.35
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 99.34
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 99.34
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 99.31
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 99.3
4a5s_A 740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 99.29
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 99.28
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 99.26
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 99.23
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 99.22
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 99.22
2xdw_A 710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 99.22
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 99.2
2xdw_A 710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 99.19
3azo_A 662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 99.19
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 99.17
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 99.17
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 99.17
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 99.15
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 99.15
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 99.14
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 99.12
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 99.09
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 99.08
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 99.08
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 99.08
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 99.07
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 99.05
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 99.03
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 99.02
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 98.99
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 98.98
1yr2_A 741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 98.96
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 98.92
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 98.9
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 98.89
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 98.88
1yr2_A 741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 98.87
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 98.87
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 98.86
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 98.85
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 98.79
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 98.76
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 98.73
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 98.73
3iuj_A 693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 98.72
1xip_A 388 Nucleoporin NUP159; beta-propeller, transport prot 98.69
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 98.68
3iuj_A 693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 98.63
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 98.59
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 98.59
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 98.58
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 98.54
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 98.53
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 98.51
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 98.47
4a2l_A 795 BT_4663, two-component system sensor histidine kin 98.47
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 98.45
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 98.42
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 98.42
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 98.41
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 98.38
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.38
4a2l_A 795 BT_4663, two-component system sensor histidine kin 98.36
2hz6_A 369 Endoplasmic reticulum to nucleus signalling 1 isof 98.34
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.33
3v9f_A 781 Two-component system sensor histidine kinase/RESP 98.32
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.29
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.27
2qe8_A343 Uncharacterized protein; structural genomics, join 98.25
1kv9_A 668 Type II quinohemoprotein alcohol dehydrogenase; el 98.14
3v9f_A 781 Two-component system sensor histidine kinase/RESP 98.13
2qe8_A343 Uncharacterized protein; structural genomics, join 98.13
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.12
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 98.08
1fwx_A 595 Nitrous oxide reductase; beta-propeller domain, cu 98.08
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.07
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 98.06
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 98.06
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 98.05
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 98.04
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.04
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.02
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.01
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.99
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.91
1kv9_A 668 Type II quinohemoprotein alcohol dehydrogenase; el 97.91
2fp8_A322 Strictosidine synthase; six bladed beta propeller 97.9
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.89
2ece_A462 462AA long hypothetical selenium-binding protein; 97.87
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.85
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 97.81
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 97.81
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.79
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.77
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 97.76
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 97.73
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 97.71
2ece_A462 462AA long hypothetical selenium-binding protein; 97.7
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.69
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.66
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.62
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.61
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.6
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 97.58
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.52
2p4o_A306 Hypothetical protein; putative lactonase, structur 97.49
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 97.48
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 97.47
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 97.45
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 97.43
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.42
2p4o_A306 Hypothetical protein; putative lactonase, structur 97.41
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 97.41
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.4
3v65_B386 Low-density lipoprotein receptor-related protein; 97.39
2fp8_A322 Strictosidine synthase; six bladed beta propeller 97.39
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.38
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.31
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.27
3nmz_A458 APC variant protein; protein-protein complex, arma 97.24
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 97.21
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.19
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.12
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.12
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 97.1
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.1
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 97.07
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 96.93
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 96.93
1fwx_A 595 Nitrous oxide reductase; beta-propeller domain, cu 96.91
3ott_A 758 Two-component system sensor histidine kinase; beta 96.85
2xe4_A 751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 96.84
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 96.8
3nmz_A458 APC variant protein; protein-protein complex, arma 96.79
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 96.67
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 96.65
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 96.61
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.61
3p5b_L400 Low density lipoprotein receptor variant; B-propel 96.61
2xe4_A 751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 96.56
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 96.55
3v65_B386 Low-density lipoprotein receptor-related protein; 96.55
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 96.51
3p5b_L400 Low density lipoprotein receptor variant; B-propel 96.45
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 96.44
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 96.43
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 96.39
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 96.38
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 96.29
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 96.13
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 96.13
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 96.12
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 96.06
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.03
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 95.96
2ism_A352 Putative oxidoreductase; BL41XU spring-8, bladed b 95.93
4a0p_A 628 LRP6, LRP-6, low-density lipoprotein receptor-rela 95.9
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 95.87
3ott_A 758 Two-component system sensor histidine kinase; beta 95.79
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 95.78
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 95.67
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 95.6
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 95.5
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 95.35
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 95.34
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 95.31
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 95.28
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 94.99
1bpo_A 494 Protein (clathrin); clathrin endocytosis beta-prop 94.86
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 94.67
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 94.59
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 94.58
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 94.57
3kya_A496 Putative phosphatase; structural genomics, joint c 94.54
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 94.52
3a9g_A354 Putative uncharacterized protein; PQQ dependent de 94.39
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 94.21
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 94.08
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 93.89
3amr_A355 3-phytase; beta-propeller, phytate, MYO-inositol h 93.88
3s94_A 619 LRP-6, low-density lipoprotein receptor-related pr 93.76
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 93.18
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 93.08
3das_A347 Putative oxidoreductase; aldose sugar dehydrogenas 93.07
3sre_A355 PON1, serum paraoxonase; directed evolution, 6-bla 93.03
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 92.99
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 92.86
4a0p_A 628 LRP6, LRP-6, low-density lipoprotein receptor-rela 92.78
3amr_A355 3-phytase; beta-propeller, phytate, MYO-inositol h 92.58
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 92.51
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 92.33
3s25_A302 Hypothetical 7-bladed beta-propeller-like protein; 92.3
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 91.71
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 91.51
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 91.41
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 91.17
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 91.15
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 91.03
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 89.82
3grl_A651 General vesicular transport factor P115; vesicle t 89.67
1bpo_A 494 Protein (clathrin); clathrin endocytosis beta-prop 89.44
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 89.42
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 89.36
1cru_A 454 Protein (soluble quinoprotein glucose dehydrogena; 89.26
3kya_A496 Putative phosphatase; structural genomics, joint c 88.6
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 88.59
2g8s_A353 Glucose/sorbosone dehydrogenases; bladed beta-prop 86.86
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 86.56
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 85.85
1qgr_A876 Protein (importin beta subunit); transport recepto 85.46
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 85.01
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 84.44
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 84.38
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 84.35
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 84.18
3pbp_A 452 Nucleoporin NUP82; beta-propeller, mRNA export, mR 83.67
1qgr_A876 Protein (importin beta subunit); transport recepto 83.57
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 83.49
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 83.47
3grl_A651 General vesicular transport factor P115; vesicle t 83.45
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 83.3
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 83.08
3s25_A302 Hypothetical 7-bladed beta-propeller-like protein; 82.93
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 82.11
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 81.76
3s94_A619 LRP-6, low-density lipoprotein receptor-related pr 80.96
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 80.85
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 80.59
2ism_A352 Putative oxidoreductase; BL41XU spring-8, bladed b 80.36
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 80.09
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=9.2e-35  Score=321.94  Aligned_cols=279  Identities=16%  Similarity=0.173  Sum_probs=241.0

Q ss_pred             EeecCCCCCCEEEEEEeC------CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 002389          642 LEASHKCSGAVTALIYYK------GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTI  715 (929)
Q Consensus       642 l~~~~gH~~~Vtsl~fs~------~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtI  715 (929)
                      ++...+|.++|++++|++      .+|+||+.||+|+|||+.+++......+.+|..+|.+++|+|++..++||+.|++|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            345569999999999972      38999999999999999887665667889999999999999999999999999999


Q ss_pred             EEEEccCCeEEEEEEeccCCCe--EEeccCCCEEEEEecCCeEEEEeCCCc--eeeecc-CCCeEEEEEe-CCE-EEEEE
Q 002389          716 GVWQMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQGHRMKVIDSSRT--LKDIYR-SKGIKSMSVV-QGK-IYIGC  788 (929)
Q Consensus       716 rIWDl~tg~~~~~~~~~h~~~V--~s~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~-~~~V~sla~s-dg~-llsgs  788 (929)
                      ++||+.+++..... ..+...+  .+|+|+++++++++.|+.|++||+...  ...+.. ...+.+++|+ +|+ +++|+
T Consensus       105 ~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~  183 (321)
T 3ow8_A          105 RLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA  183 (321)
T ss_dssp             EEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence            99999998754433 3444444  368899999999999999999999843  223333 4569999997 665 88899


Q ss_pred             CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 002389          789 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV  868 (929)
Q Consensus       789 ~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slaf  868 (929)
                      .|+.|++||+.+++..      ..+.+|..+|.++.++|++.++++.+ .|++|++||.+.+.....+.+|...|.+++|
T Consensus       184 ~dg~i~iwd~~~~~~~------~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  256 (321)
T 3ow8_A          184 IDGIINIFDIATGKLL------HTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHANLAGTLSGHASWVLNVAF  256 (321)
T ss_dssp             TTSCEEEEETTTTEEE------EEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CCCeEEEEECCCCcEE------EEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcceeEEEcCCCCceEEEEE
Confidence            9999999999887543      33467888999999999999888876 7899999999999999999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389          869 VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP  928 (929)
Q Consensus       869 Spdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdi  928 (929)
                      +|++.+|++|+.||+|++||+.+++++.++.+|. .|++++|+  ++.|++++.||+|++||+
T Consensus       257 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            9999999999999999999999999999999984 59999986  679999999999999995
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} Back     alignment and structure
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 929
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 3e-08
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 4e-05
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 1e-04
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 4e-08
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 6e-08
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 0.002
d1pgua1325 b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba 9e-08
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 1e-07
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 5e-06
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 2e-05
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 1e-07
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 3e-07
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 0.001
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 2e-06
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 0.004
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 0.004
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 3e-06
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 0.001
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 0.004
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 5e-06
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 0.002
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 3e-05
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 8e-05
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 0.003
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 5e-05
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 0.003
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 2e-04
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 2e-04
d1k32a3360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 3e-04
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.4 bits (129), Expect = 3e-08
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 581 CLCIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKAADYYLPNISRISCVHTQ 640
              +++   G   Q        +  ++    N    A      +D     +  +      
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFA----TGSDDATCRLFDLRADQEL 261

Query: 641 ILEASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFS 698
           +  +       +T++ + K   LL +G+ D +  +WD  K        +  H   V+   
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLG 319

Query: 699 LFEPGESLLSGSADKTIGVW 718
           + + G ++ +GS D  + +W
Sbjct: 320 VTDDGMAVATGSWDSFLKIW 339
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query929
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 100.0
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 100.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 100.0
d1tbga_340 beta1-subunit of the signal-transducing G protein 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.98
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.97
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.97
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.97
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.97
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.96
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.96
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.95
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.95
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.95
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.95
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.94
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.94
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.94
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.93
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.93
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.93
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 99.93
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.92
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.91
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.88
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.88
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.87
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.85
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.81
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.81
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.8
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.79
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.76
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.73
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.69
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.67
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.65
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.64
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.62
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.59
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.59
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.5
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.46
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.45
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.44
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.36
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.25
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.17
d2bgra1 470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 98.94
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 98.64
d2bgra1 470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 98.61
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.55
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.46
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 98.39
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 98.29
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 98.21
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 98.2
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 98.12
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 98.12
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 98.07
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.03
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.02
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 98.02
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 98.01
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 97.99
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 97.95
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.85
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.77
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 97.7
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 97.65
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.46
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 97.46
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 97.42
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 97.35
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.31
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.25
d1xfda1 465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 96.73
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.73
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.71
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 96.69
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 96.64
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 96.6
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 95.61
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 94.81
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 94.79
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 94.4
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 94.38
d1fwxa2459 Nitrous oxide reductase, N-terminal domain {Paraco 92.62
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 92.37
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 91.77
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 91.77
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 89.69
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 89.41
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 88.93
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 88.71
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 88.19
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 86.98
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 86.26
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 85.57
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 84.73
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 83.11
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 81.57
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 81.3
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 81.28
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-32  Score=295.63  Aligned_cols=273  Identities=14%  Similarity=0.216  Sum_probs=226.0

Q ss_pred             CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCee---EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389          647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAM---LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV  721 (929)
Q Consensus       647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~---~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~  721 (929)
                      +|...|++++|+ ++ +|+||+ ||.|+|||+.+....   ......+|.++|++++|+|+|++|++|+.||+|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            699999999999 33 899887 899999999765322   334456899999999999999999999999999999987


Q ss_pred             CCeEEE-EEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCce--eeec-cCCCeEEEEEe-CC-EEEEEECCCcE
Q 002389          722 QRKLEL-IEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL--KDIY-RSKGIKSMSVV-QG-KIYIGCMDSSI  793 (929)
Q Consensus       722 tg~~~~-~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~--~~l~-~~~~V~sla~s-dg-~llsgs~Dg~I  793 (929)
                      ...... .....|...+..  +++++..+++++.|+.+++|++....  .... +...+.+++++ ++ .+++|+.|+.+
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v  207 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV  207 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            654332 334466777764  67889999999999999999987432  2222 25569999997 54 48889999999


Q ss_pred             EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389          794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI  873 (929)
Q Consensus       794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~  873 (929)
                      ++||+.+++....       ..+...+.++.++|++.++++.+ .|+.+++||.+.+... ....|...|++++|+|+++
T Consensus       208 ~i~d~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         208 RSWDLREGRQLQQ-------HDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             EEEETTTTEEEEE-------EECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSS
T ss_pred             cccccccceeecc-------cccccceEEEEEcccccccceec-cccccccccccccccc-cccccccccceEEECCCCC
Confidence            9999988764332       23577899999999988887766 7889999999988765 4567899999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEeecC
Q 002389          874 YLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWIPL  929 (929)
Q Consensus       874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaSgs~DG~I~IWdil  929 (929)
                      +|++|+.||.|++||..+++.+..+..++.|++++|+  +++|++|+.||+|+|||++
T Consensus       279 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            9999999999999999999999998877789998876  7799999999999999974
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure