Citrus Sinensis ID: 002406

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------
MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQVTLPTSPSFPVRSKQREACGSCKC
ccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEccccEEEEcccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEcccccccccEEEEEEcccccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccEEccccccccccHHHHHHHHccccEEEEccccccEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccccccccccccccccccEEEEEEEccHHccccccccccccccHHHHHHHHHHHcccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEEcccEEEEEEEEcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccEEEEcccccccccc
ccccccEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHccccccccccccEEEEEEccccEEEEEEcHHcccccccccEEEEEEEccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccEEEEEEcccccccccEEEEEEEcccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccEEEcccccccccccHHHHHHHHccEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccHccEEEEEcccccHHHHHccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccEEEEEEEccHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHccccHHHEEEEccccHHHHccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHcccccccccccccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEccccEEEEEEEEccHHHHHHHHHHccccccccHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccEEEEEccccccccc
mdadttvtltdpmdYKVEELLKEVHFARAPAITKLVDDTVSAVRKSIskipdafpvtadlapgfvrdigadkvefkfnkpktfkiggsysincvvkpavnvdlfvglpkecfhekdylnhryhaKRCLYLCVIKkhlksspsfdKVEWSAMQNEARKPVLVVYPavksveapgffvriIPTAASLFNIAKLNlkrnnvrafnqdgipratpkynssiledmflEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATsklwnrglyfppkgqigvskeeklqykeafpvvicdpsaqVNLAFRMTSVGFCELQDEAASTLQCMdkcgdggfeetfltkidfpakydyCVRLnlrghtevhalGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVtwrnspsewnienglavldrepllvgISVSSLEKLFRIvdigpnaenKEEALRFRKFWGEKaelrrfkdgtiaesTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLiediplkissvqpldsafrftsvfppephplanerhtvsrlhkltpsciqPLEVMIQLegsgnwpmdHVAIEKTKSAFLIKIGESLqnrwgmtcsateddadIFMSGYAFRLKILHERGLSLvksengnkakrvystdKILFIRGQHASMINglqgrypvfgpVVRVAKRWAASHLFSACLVEEAVELLVAYLFlkplpfnvpcsrvTGFLRFLRLLAEYDWTFSALVVDinndfgpedfkvINDNFMSSRKASEENVQNVNPALFLATAYDkaseawttcspnftELKRLVAYARSSANLLTKLILEDqtdscrwegqvtlptspsfpvrskqreacgsckc
mdadttvtltdpmdykVEELLKEVHFarapaitklvdDTVSAVRKsiskipdafpvtadLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNvrafnqdgipratpkynssILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSllnqglvdrAKSIRvtwrnspsewnienglavldrePLLVGISVSSLEKLFRIVdigpnaenkeeALRFRKfwgekaelrrfkdgtiaestvweseqwTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLslvksengnkakrvystdKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQvtlptspsfpvrskqreacgsckc
MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGylisillsylvslDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQVTLPTSPSFPVRSKQREACGSCKC
***********PMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVF************TVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNF***********QNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQV***********************
*****TVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRN************ATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLY***************QYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSP*************REPLLVGISVSSLEKLFRIVDIG*NAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLH*******FSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLV***************KILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFG**********************QNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLIL****DSCRWEGQVTLPTSPSFPVRSKQREA******
MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQVTLPTSP*****************
*****TVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQVTLPTSPSFPVRSKQREACGSCKC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQVTLPTSPSFPVRSKQREACGSCKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query927 2.2.26 [Sep-21-2011]
Q6NRY2 1147 Nucleolar protein 6 OS=Xe N/A no 0.932 0.753 0.308 1e-115
Q8R5K4 1152 Nucleolar protein 6 OS=Mu yes no 0.910 0.732 0.307 1e-111
Q9H6R4 1146 Nucleolar protein 6 OS=Ho yes no 0.908 0.734 0.299 1e-108
Q5M7P5 1145 Nucleolar protein 6 OS=Xe yes no 0.867 0.702 0.320 1e-107
B4LWT7 1184 Nucleolar protein 6 OS=Dr N/A no 0.900 0.705 0.269 9e-80
B4PR18 1199 Nucleolar protein 6 OS=Dr N/A no 0.850 0.657 0.280 6e-78
Q295U7 1212 Nucleolar protein 6 OS=Dr yes no 0.843 0.645 0.272 2e-77
B4GFN6 1212 Nucleolar protein 6 OS=Dr N/A no 0.843 0.645 0.271 2e-76
B4NIM9 1202 Nucleolar protein 6 OS=Dr N/A no 0.898 0.693 0.259 3e-76
Q8IH00 1193 Nucleolar protein 6 OS=Dr yes no 0.851 0.661 0.271 2e-74
>sp|Q6NRY2|NOL6_XENLA Nucleolar protein 6 OS=Xenopus laevis GN=nol6 PE=2 SV=2 Back     alignment and function desciption
 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 286/928 (30%), Positives = 468/928 (50%), Gaps = 64/928 (6%)

Query: 10  TDPMDYKVEELLKEVHFA--RAPAITKLVDDTVSAVRKSISKIP-----DAFPVTADLAP 62
           T+ +  ++EELL+EV     R   I   + + ++A+  +I + P     D   +++ +  
Sbjct: 81  TNLLRMQIEELLQEVKLKEKRRKTIDGFLHE-INALLGTIPETPKTDLTDQSWLSSSIKV 139

Query: 63  GFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRY 122
            F++     K +F F  P + K+ GSY +   +KP +NVDL V +P+E    KD LN RY
Sbjct: 140 PFLQVPYQVKGKFSFLPPSSIKVVGSYLLGTCIKPEINVDLAVTMPQEILQVKDNLNQRY 199

Query: 123 HAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTA 182
             KR LYL  I  HL  +  F  V+++ M +   KP+L++ P  K  +     + I P  
Sbjct: 200 SRKRALYLAHIASHLTDNKLFSSVKFTYMNSNHLKPILLLRPQGKDEKLVTVRIHICPPP 259

Query: 183 ASLFNIAKLNLKRNNVRA-------FNQDGI-PRATPKYNSSILEDMFLEDNAEYVEKTI 234
              F +++L   +NNVR           +G+    TP YN++IL D+ LE +  ++    
Sbjct: 260 G-FFKLSRLYPNKNNVRTSWYTEQQTETEGVCDPPTPYYNNTILSDLTLEHHLHHLTNCA 318

Query: 235 SRWKELGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVV 294
           + +  + +A+ LLKVW  QR       C NG+L S+L+SYL+S +KIN  M   Q+LR  
Sbjct: 319 TDFPGMKDAIALLKVWLHQRQLDKGFGCFNGFLASMLISYLLSKNKINKVMSGYQVLRNT 378

Query: 295 LDFIATSKLWNRGLYFPPKGQIGVSKEEKL----QYKEAFPVVICDPSAQVNLAFRMTSV 350
           L F+AT+ L   G+       +    +  L     + EAF VV  DP   VNL   MT+ 
Sbjct: 379 LQFLATTDLTVNGI------TMATCSDSSLPSLPDFHEAFQVVFVDPMGVVNLCADMTAS 432

Query: 351 GFCELQDEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLN----LRGHTEVHALG 406
            + ++Q EA+ +L+ +D     GF    +    F   +D+   L     L+G  +   L 
Sbjct: 433 KYRQIQFEASESLKVLDDTNVNGFHLLLMVPKPFVRTFDHVFHLTNVAKLQGTCKKMKLL 492

Query: 407 FCLDDECWRLYEQKVH---SLLNQGLVDRAKSIRVTWRNSPSEWNI-ENGLAVLDREPLL 462
             L D         +    S+L++GL  R   +  T  + P EWN+ E      D   + 
Sbjct: 493 NQLIDRGGDYLATALPYLLSVLSKGLGPRVSLLSHTLTHKP-EWNVGEEPAKHKDSGLVT 551

Query: 463 VGISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQ-W 521
           VG+ +   E    ++D GP A++  EAL FR FWGEK+ELRRF+DG+I E+ VW     +
Sbjct: 552 VGLLLDP-ELYTNVLDKGPAADS-SEALDFRAFWGEKSELRRFQDGSICEAVVWTGGSLY 609

Query: 522 TRHLILKGIIEYVLLRHLSLSKENVVQIVDQLDFSLLHGAKDLVSFS--ASLLEAFEVLS 579
            +  + + I++Y+L  H ++ +  +    + LD  L  G +         S++++++ LS
Sbjct: 610 DKRKVPELIVKYLLELHANIPESCINYTGNALDCVLSRGRETSTEEEKMVSIIQSYDDLS 669

Query: 580 KRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEP--------HPLANERHTVSRLHKLTPS 631
           ++L  + D+PL I+SVQ      R+T VFPP P        H L  ++  +    K  P+
Sbjct: 670 RKLWNLNDLPLTITSVQGTHPCLRYTDVFPPLPVKPDWSSYHLLREKKCLIPNPEKPCPA 729

Query: 632 CIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSG 691
            + P++V+  +EGSG WP D  AI++ K+AF I++ E L ++  + C+ +    D++  G
Sbjct: 730 YVSPVKVICHMEGSGKWPQDKDAIKRLKAAFQIRLSELLSSQHQLLCNPSATHTDVYKDG 789

Query: 692 YAFRLKILHERGLSLVK---SENGNKAKRVYSTDKILFIRGQH----ASMINGLQGRYPV 744
           Y FR+++ + R    +K   +  G    +       L +   H    +S ++GL  ++P 
Sbjct: 790 YVFRVQVAYHREPQYMKEFVTPEGMLKYQDTEESMQLEMETNHLPHLSSTLHGLHQQHPA 849

Query: 745 FGPVVRVAKRWAASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEY 804
           FG   R+AKRW  S L      EE ++LLVA+LFL P P++ P S + GFLRFL L+A +
Sbjct: 850 FGGTSRLAKRWIQSQLLGDSFSEECLDLLVAHLFLHPAPYSPPSSALVGFLRFLHLVATF 909

Query: 805 DWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTT 864
           DW  S L+V++N +    ++  I ++F+S+R           P +F+AT  DK    WT 
Sbjct: 910 DWKNSPLIVNLNGELKGSEYTEIQNDFISARAQL--------PVMFIATPKDKKDSVWTK 961

Query: 865 CSPNFTELKRLVAYARSSANLLTKLILE 892
             P    L+RL+     S   L + +++
Sbjct: 962 NQPTAQMLQRLIVLCLESLRALEQQLMD 989

Xenopus laevis (taxid: 8355)
>sp|Q8R5K4|NOL6_MOUSE Nucleolar protein 6 OS=Mus musculus GN=Nol6 PE=2 SV=2 Back     alignment and function description
>sp|Q9H6R4|NOL6_HUMAN Nucleolar protein 6 OS=Homo sapiens GN=NOL6 PE=1 SV=2 Back     alignment and function description
>sp|Q5M7P5|NOL6_XENTR Nucleolar protein 6 OS=Xenopus tropicalis GN=nol6 PE=2 SV=1 Back     alignment and function description
>sp|B4LWT7|NOL6_DROVI Nucleolar protein 6 OS=Drosophila virilis GN=Mat89Ba PE=3 SV=1 Back     alignment and function description
>sp|B4PR18|NOL6_DROYA Nucleolar protein 6 OS=Drosophila yakuba GN=Mat89Ba PE=3 SV=1 Back     alignment and function description
>sp|Q295U7|NOL6_DROPS Nucleolar protein 6 OS=Drosophila pseudoobscura pseudoobscura GN=Mat89Ba PE=3 SV=2 Back     alignment and function description
>sp|B4GFN6|NOL6_DROPE Nucleolar protein 6 OS=Drosophila persimilis GN=Mat89Ba PE=3 SV=1 Back     alignment and function description
>sp|B4NIM9|NOL6_DROWI Nucleolar protein 6 OS=Drosophila willistoni GN=Mat89Ba PE=3 SV=1 Back     alignment and function description
>sp|Q8IH00|NOL6_DROME Nucleolar protein 6 OS=Drosophila melanogaster GN=Mat89Ba PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query927
225430750 1057 PREDICTED: nucleolar protein 6-like [Vit 0.968 0.849 0.736 0.0
297735151 1066 unnamed protein product [Vitis vinifera] 0.968 0.842 0.731 0.0
255576530 1046 nucleolar RNA-associated protein, putati 0.959 0.849 0.725 0.0
356538192 1050 PREDICTED: nucleolar protein 6-like [Gly 0.968 0.855 0.698 0.0
356495417 1055 PREDICTED: nucleolar protein 6-like [Gly 0.968 0.851 0.688 0.0
297837003 1049 hypothetical protein ARALYDRAFT_474974 [ 0.967 0.855 0.684 0.0
357483427 1048 Nucleolar protein [Medicago truncatula] 0.966 0.854 0.665 0.0
145337144 1053 uncharacterized protein [Arabidopsis tha 0.967 0.851 0.676 0.0
449449451 1070 PREDICTED: nucleolar protein 6-like [Cuc 0.977 0.846 0.661 0.0
147792211 1040 hypothetical protein VITISV_009031 [Viti 0.906 0.807 0.669 0.0
>gi|225430750|ref|XP_002266705.1| PREDICTED: nucleolar protein 6-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1379 bits (3570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 667/906 (73%), Positives = 764/906 (84%), Gaps = 8/906 (0%)

Query: 1   MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADL 60
           MD+DT   + +PMD KV ELLKEV    + A TKLVDDTVSA++++I  IP+   VTAD 
Sbjct: 1   MDSDT---IMEPMDLKVRELLKEVQLDYSSATTKLVDDTVSAIKQAIDTIPEDLKVTADF 57

Query: 61  APGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNH 120
           AP FVRDIGADKVEF F KPK F+IGGSYSI CV KP V++DLFV LPKECFHEKDYLNH
Sbjct: 58  APQFVRDIGADKVEFNFKKPKLFEIGGSYSIRCVAKPDVDIDLFVRLPKECFHEKDYLNH 117

Query: 121 RYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIP 180
           RYHAKR LYLC+IKK+L SS    KVEWS +QNEARKPVLVVYPA++  E PG  VRIIP
Sbjct: 118 RYHAKRFLYLCIIKKYLNSSSFIRKVEWSTLQNEARKPVLVVYPAMELAEVPGLSVRIIP 177

Query: 181 TAASLFNIAKLNLKRNNVRAFNQD-GIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE 239
           TA SLF+I KLNLKRNNV +  QD   P+ATPKYNSSILEDMFLEDNAE+V++T   WKE
Sbjct: 178 TATSLFSILKLNLKRNNVCSLKQDESTPQATPKYNSSILEDMFLEDNAEFVKRTFLGWKE 237

Query: 240 LGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVS---LDKINNSMKALQILRVVLD 296
           LGEALILLKVWARQRSSIY +DCLNG+LIS+++SYL +    + INNSMK +QI RV LD
Sbjct: 238 LGEALILLKVWARQRSSIYAYDCLNGFLISVIMSYLATDSGRNLINNSMKPMQIFRVTLD 297

Query: 297 FIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQ 356
           FIATSKLWN GLYF  +  + +SKE   QY   FPVVI +  A  NLAFR+T  GF ELQ
Sbjct: 298 FIATSKLWNTGLYFKSQSLLNISKEVHYQYLRLFPVVISESLAHFNLAFRITGGGFLELQ 357

Query: 357 DEAASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRL 416
           DEA  TL C+ KC DGGFEE F+TKID+PAKYDYC+RLNL+G+++V+ALGFCLD+ECWR 
Sbjct: 358 DEAVLTLSCIGKCKDGGFEELFMTKIDYPAKYDYCMRLNLKGNSDVYALGFCLDEECWRS 417

Query: 417 YEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRI 476
           +EQKVH LL QGL DRAK IRV+W+N+ SE N+ENGL++ DREPLL+GISVSSLEK FR+
Sbjct: 418 FEQKVHFLLCQGLSDRAKFIRVSWKNATSECNVENGLSIFDREPLLIGISVSSLEKAFRV 477

Query: 477 VDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLL 536
           VD+GPNAE+K+EAL+FRKFWGEKAELRRFKDG IAESTVWES+QW RH I+K I EY+LL
Sbjct: 478 VDVGPNAEHKDEALKFRKFWGEKAELRRFKDGMIAESTVWESKQWERHTIIKRITEYLLL 537

Query: 537 RHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQ 596
           RHLSLS+ N+V IVDQLDFSL++G  D +SFS SLLEAFEVLSKRLHL++DIPLK+SSVQ
Sbjct: 538 RHLSLSERNIVHIVDQLDFSLVNGVGDSISFSGSLLEAFEVLSKRLHLLKDIPLKVSSVQ 597

Query: 597 PLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIE 656
           PLDSAFRFTSVFPPEPHPLANE+  V RL+KLT +CIQPLEVMIQLEGSGNWPMD VAIE
Sbjct: 598 PLDSAFRFTSVFPPEPHPLANEKSAVPRLNKLTSTCIQPLEVMIQLEGSGNWPMDDVAIE 657

Query: 657 KTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENG-NKA 715
           KTKSAFL++IGESLQN WGM C+ATE++ D+FMSGYAFRL+ILHERGLSL+  +NG N+ 
Sbjct: 658 KTKSAFLLRIGESLQNNWGMICTATEENVDVFMSGYAFRLRILHERGLSLLNRQNGSNQL 717

Query: 716 KRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVA 775
           K + S DK LF RGQH+SMINGLQG YP++GPVVR+AKRW ASHLFSACLVEEAVELLVA
Sbjct: 718 KHISSVDKELFTRGQHSSMINGLQGCYPIYGPVVRLAKRWVASHLFSACLVEEAVELLVA 777

Query: 776 YLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSR 835
           YLFLKPLPF VPCSR++GFLRFLRLL+EYDW FSALVVDIN+D  P D K IN+NF SSR
Sbjct: 778 YLFLKPLPFYVPCSRISGFLRFLRLLSEYDWNFSALVVDINSDLSPSDEKEINENFTSSR 837

Query: 836 KASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQT 895
           K  EEN QNVNPA+FLATAYDKASEAWT  SPN +EL+RLVAYARSSANLLTKLIL  Q 
Sbjct: 838 KGYEENAQNVNPAMFLATAYDKASEAWTRFSPNSSELRRLVAYARSSANLLTKLILGGQI 897

Query: 896 DSCRWE 901
           DS +WE
Sbjct: 898 DSYKWE 903

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297735151|emb|CBI17513.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576530|ref|XP_002529156.1| nucleolar RNA-associated protein, putative [Ricinus communis] gi|223531380|gb|EEF33215.1| nucleolar RNA-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356538192|ref|XP_003537588.1| PREDICTED: nucleolar protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356495417|ref|XP_003516574.1| PREDICTED: nucleolar protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|297837003|ref|XP_002886383.1| hypothetical protein ARALYDRAFT_474974 [Arabidopsis lyrata subsp. lyrata] gi|297332224|gb|EFH62642.1| hypothetical protein ARALYDRAFT_474974 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357483427|ref|XP_003612000.1| Nucleolar protein [Medicago truncatula] gi|355513335|gb|AES94958.1| Nucleolar protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|145337144|ref|NP_176566.3| uncharacterized protein [Arabidopsis thaliana] gi|110741755|dbj|BAE98823.1| hypothetical protein [Arabidopsis thaliana] gi|332196029|gb|AEE34150.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449449451|ref|XP_004142478.1| PREDICTED: nucleolar protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147792211|emb|CAN72980.1| hypothetical protein VITISV_009031 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query927
TAIR|locus:2195523 1053 AT1G63810 "AT1G63810" [Arabido 0.967 0.851 0.668 0.0
RGD|1308033 1154 Nol6 "nucleolar protein 6 (RNA 0.665 0.534 0.295 1.2e-100
MGI|MGI:2140151 1152 Nol6 "nucleolar protein family 0.664 0.534 0.301 1.8e-100
UNIPROTKB|F1SE91 1145 NOL6 "Uncharacterized protein" 0.632 0.511 0.297 2.1e-97
UNIPROTKB|Q9H6R4 1146 NOL6 "Nucleolar protein 6" [Ho 0.663 0.536 0.296 5.8e-97
UNIPROTKB|F1PEI3 1146 NOL6 "Uncharacterized protein" 0.629 0.509 0.304 3.1e-96
UNIPROTKB|A5PJU0 1146 NOL6 "Uncharacterized protein" 0.631 0.510 0.298 4.8e-95
UNIPROTKB|B4LWT7 1184 Mat89Ba "Nucleolar protein 6" 0.903 0.707 0.265 2.5e-72
UNIPROTKB|B4K5S6 1187 Mat89Ba "Nucleolar protein 6" 0.831 0.649 0.269 2.9e-69
DICTYBASE|DDB_G0291438 1278 nol6 "Nrap family protein" [Di 0.429 0.311 0.282 5.7e-68
TAIR|locus:2195523 AT1G63810 "AT1G63810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3184 (1125.9 bits), Expect = 0., P = 0.
 Identities = 604/903 (66%), Positives = 725/903 (80%)

Query:     1 MDADTTVTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADL 60
             M+ADT    TD    KV +LLK+       ++ KLVDDTVS+++++I  IP+ F VT++L
Sbjct:     1 MEADTK---TDSRTLKVNDLLKDARLDY-DSLRKLVDDTVSSIKEAIDGIPEKFQVTSEL 56

Query:    61 APGFVRDIGADK-VEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLN 119
             AP FV DIGADK VEF F KP  F + GSYSI  + KP  +VDL V LPKECF+EKDY+N
Sbjct:    57 APSFVEDIGADKEVEFSFKKPNGFNLCGSYSICGMAKPDTSVDLLVHLPKECFYEKDYMN 116

Query:   120 HRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRII 179
             HRYHAKRCLYLCVI+KHL SS S +KV WS + NEARKPVLVV+PA K  + PGF +R+I
Sbjct:   117 HRYHAKRCLYLCVIEKHLLSSSSIEKVVWSTLHNEARKPVLVVFPAKKLDQFPGFSIRLI 176

Query:   180 PTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE 239
             P+A SLF++AKL++ RNNVR+   DG+P  TP YNSSILEDMFLE+N+E+++KT S WKE
Sbjct:   177 PSATSLFSVAKLSISRNNVRSVTADGVPEPTPTYNSSILEDMFLEENSEFLKKTFSEWKE 236

Query:   240 LGEALILLKVWARQRSSIYVHDCLNGXXXXXXXXXXXXXDKINNSMKALQILRVVLDFIA 299
             L +ALILLK+WARQRSSIYVHDCLNG              KIN ++ AL I RV LDFIA
Sbjct:   237 LSDALILLKIWARQRSSIYVHDCLNGFLISVILSYLATHSKINKALSALDIFRVTLDFIA 296

Query:   300 TSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEA 359
             TSKLW RGLY PP+ +I VSKEEK+Q++E FPVVICD S  VNLAFRMTSVGF ELQDEA
Sbjct:   297 TSKLWERGLYLPPQSEIRVSKEEKMQFRELFPVVICDSSTFVNLAFRMTSVGFLELQDEA 356

Query:   360 ASTLQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQ 419
             + TL+CM+K  DGGFEE F+TKID+P KYD+C+RL L+G T V   GFCLD ECWRLYEQ
Sbjct:   357 SLTLKCMEKLRDGGFEEIFMTKIDYPVKYDHCIRLQLKGKTAVSLSGFCLDKECWRLYEQ 416

Query:   420 KVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDI 479
             KVHSLL +GL DRAKSIRV WRN+  +W++E+GL+VLDREPL +GISVSS EK +R VDI
Sbjct:   417 KVHSLLLEGLGDRAKSIRVVWRNTNQDWHVESGLSVLDREPLFIGISVSSTEKAYRTVDI 476

Query:   480 GPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHL 539
             GP+AENK EALRFRKFWGEK++LRRFKDG I+ESTVWE++QWT+HLI+K I+EY+L RHL
Sbjct:   477 GPDAENKIEALRFRKFWGEKSDLRRFKDGRISESTVWETQQWTKHLIMKQIVEYILKRHL 536

Query:   540 SLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLD 599
             SL+ +++VQ+VDQLDFSL +G KD +S S +L++A+EVLSK L  IE IPLK+SSVQ LD
Sbjct:   537 SLTSDDIVQLVDQLDFSLNYGGKDPISLSGNLVQAYEVLSKCLREIEGIPLKVSSVQSLD 596

Query:   600 SAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTK 659
             SA RFTSVFPPEPHP+A E+    RL KL PSCI  +EVMIQLEGSGNWPMD +A+EKTK
Sbjct:   597 SALRFTSVFPPEPHPVACEKIDSRRLQKLIPSCIPAMEVMIQLEGSGNWPMDDLAVEKTK 656

Query:   660 SAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENG-NKAKRV 718
             SAFL+KI ESLQN  G+ C+ATED+ D+F+ GYAFRL+ILHERGLSLVK E G +  K V
Sbjct:   657 SAFLLKIAESLQNVKGIPCTATEDNVDVFIGGYAFRLRILHERGLSLVKREIGVDPVKHV 716

Query:   719 YSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSACLVEEAVELLVAYLF 778
              STDK+LFIR QHASMINGLQGR+PV+ PV R+AKRW ++HLFS CL EEA+ELLVAYLF
Sbjct:   717 SSTDKMLFIRSQHASMINGLQGRFPVYAPVARLAKRWVSAHLFSGCLAEEAIELLVAYLF 776

Query:   779 LKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKAS 838
             L PLP  VP SR+ GFLRFLRLLA+Y+W F  L+VDINNDFG  D K INDNFMSSRK  
Sbjct:   777 LTPLPLGVPSSRINGFLRFLRLLADYEWMFYPLIVDINNDFGRNDEKEINDNFMSSRKGY 836

Query:   839 EENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSC 898
             EE+ QN++ A+FLA  YDKASEAWT+ SPN  E KRLVAYARSSAN+L+K++L++  DS 
Sbjct:   837 EEDKQNISSAMFLAAPYDKASEAWTSTSPNLLEQKRLVAYARSSANVLSKMVLQEHNDSV 896

Query:   899 RWE 901
             +WE
Sbjct:   897 QWE 899
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
RGD|1308033 Nol6 "nucleolar protein 6 (RNA-associated)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2140151 Nol6 "nucleolar protein family 6 (RNA-associated)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SE91 NOL6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H6R4 NOL6 "Nucleolar protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEI3 NOL6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A5PJU0 NOL6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B4LWT7 Mat89Ba "Nucleolar protein 6" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
UNIPROTKB|B4K5S6 Mat89Ba "Nucleolar protein 6" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291438 nol6 "Nrap family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024923001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (1083 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018070001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)
   •    0.453
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •    0.444
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •    0.434
GSVIVG00038815001
SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)
   •    0.432
GSVIVG00036355001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)
   •    0.424
GSVIVG00021349001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)
   •    0.424
GSVIVG00025446001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1799 aa)
   •    0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query927
pfam03813 929 pfam03813, Nrap, Nrap protein 0.0
>gnl|CDD|217744 pfam03813, Nrap, Nrap protein Back     alignment and domain information 
 Score =  665 bits (1718), Expect = 0.0
 Identities = 271/851 (31%), Positives = 403/851 (47%), Gaps = 123/851 (14%)

Query: 88  SYSINCVVK--PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSS-PSFD 144
           S+++   +K    ++VDL V +PKE F EKDYLN+RY  KR  YL  +  HLK       
Sbjct: 1   SFALKTGIKQPKGLSVDLAVTMPKELFQEKDYLNYRYFHKRAFYLAYLAAHLKKKLDLDL 60

Query: 145 KVEWSAMQNEARKPVLVVYPAVKSVEA---PGFFVRIIPTA-ASLFNIAKLNLKRNNVR- 199
           K+ +  +  +  +PVLV+ P  K         F +R+IP A   LF   KL   +NN+R 
Sbjct: 61  KISYEYLNGDPLRPVLVLEPKTKKDSDFTKSKFSIRLIPAAPDGLFPPKKLLPDKNNIRP 120

Query: 200 -AFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQR--SS 256
            + + +     TP YNSS+L D  LE   + + KT    +   +A IL +VW RQR  SS
Sbjct: 121 ASDDDEAELPPTPFYNSSVLSDSTLEPYLKLLYKTKKSCEAFKDACILGRVWLRQRGFSS 180

Query: 257 IYVHDCLNGYLISILLSYLVSLD------KINNSMKALQILRVVLDFIATSKLWNRGLYF 310
            +      G+  ++L++ L+          +  S+ + Q+ +  + F+AT+ L    L  
Sbjct: 181 SFSQGGFGGFEWAVLMALLLQGGGLNGNKILLKSLSSYQLFKATIQFLATTDLTTGPLSL 240

Query: 311 PPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCG 370
                     E K  +      V  D S  +N+  +MT   +  L+ EA  TL  ++   
Sbjct: 241 SS----ASESESKYIFFGFDTPVFFDGSRGLNILAKMTPWSYRRLRHEAKETLDLLNDSV 296

Query: 371 DGGFEETFLTKIDFP-AKYDYCVRLN-------LRGHTEVHALGFCLDDECWRLYEQKVH 422
           D  F+  FLTK D P  ++D  +RLN            ++  + F            KV+
Sbjct: 297 DDQFDPIFLTKSDEPPLRFDLILRLNPEELIDSFGSLEKIRFIKFENFLL------NKVY 350

Query: 423 SLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPN 482
            +L + L DR K I ++  +  S W IE          + VG+ ++  E+ +R+VD GP+
Sbjct: 351 EVLKKALGDRVKLIHIS-ESPSSPWPIEKKKPTKKTSSISVGLLLNP-EEAYRLVDKGPS 408

Query: 483 AENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLS 542
           AE+KEEA  FR FWGEKAELRRFKDG+I ES VW S   +  LI++ I+ Y+L RHLS+ 
Sbjct: 409 AEDKEEAAEFRSFWGEKAELRRFKDGSITESVVWSS--TSSRLIVRQIVRYILKRHLSIP 466

Query: 543 KENVVQIVDQLDFSLLHGAK------DLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQ 596
            +++    D+ D  L            L SF   L+ AF+ L K L  +ED+PL      
Sbjct: 467 SDDITYSGDEFDQLLPLPGALGQKTTSLSSFQN-LIRAFDSLEKSLRDLEDLPL------ 519

Query: 597 PLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIE 656
                                                         E SG WP +  AI+
Sbjct: 520 ----------------------------------------------ESSGKWPDELEAIQ 533

Query: 657 KTKSAFLIKIGESLQNRWGM------------TCSATEDDADIF-MSGYAFRLKILHERG 703
           KTK+AFL+KIGE L+   G               +      D+    GY FRL+ILHER 
Sbjct: 534 KTKTAFLLKIGEKLEASSGSEYKSRVGLENSVPPNLNNAFLDVLTPEGYGFRLRILHERE 593

Query: 704 LSLVKSE--NGNKAKR------VYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRW 755
            +L++ +    N   +      + + ++   I  +H   I+ L  R+P++ P VR+AKRW
Sbjct: 594 ETLLERQVKTANPVTKQEAADALSAFERRFQILPRHTRAISTLCTRFPLYSPTVRLAKRW 653

Query: 756 AASHLFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDI 815
             SHL    L EE +ELLVA +FL+P P++ P S  TGFLR L  L+ +DW    L++D+
Sbjct: 654 LDSHLLLGHLPEELIELLVAKVFLQPYPWDTPSSVETGFLRTLHFLSRWDWREEPLILDL 713

Query: 816 NNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRL 875
            +    +  K I  NF S RK    +    + ALF+AT YD +   WT   P+     RL
Sbjct: 714 VDKLTEQQIKEIETNFESWRK---IDPAGNHLALFVATDYDPSGILWTE-GPSLPIAARL 769

Query: 876 VAYARSSANLL 886
            A A+++ NL+
Sbjct: 770 TALAKAAVNLI 780

Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript. Length = 929

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 927
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 100.0
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 100.0
PTZ00418593 Poly(A) polymerase; Provisional 99.7
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.64
KOG2245562 consensus Poly(A) polymerase and related nucleotid 99.61
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.23
TIGR03671408 cca_archaeal CCA-adding enzyme. 98.93
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 98.91
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 98.5
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 98.19
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 96.58
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 96.24
PF04928254 PAP_central: Poly(A) polymerase central domain; In 96.18
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 95.68
KOG1906514 consensus DNA polymerase sigma [Replication, recom 95.36
PRK13300 447 tRNA CCA-pyrophosphorylase; Provisional 94.67
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 94.0
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 93.7
KOG20541121 consensus Nucleolar RNA-associated protein (NRAP) 93.6
PTZ00418 593 Poly(A) polymerase; Provisional 92.31
TIGR03671408 cca_archaeal CCA-adding enzyme. 91.91
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 91.44
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 91.01
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 88.42
KOG2245 562 consensus Poly(A) polymerase and related nucleotid 87.74
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 85.62
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information 
Probab=100.00  E-value=5.1e-206  Score=1895.01  Aligned_cols=805  Identities=41%  Similarity=0.642  Sum_probs=723.6

Q ss_pred             eeecccccC--CCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhh--ccCCCCCceEeecCCCCCcceeEEEE
Q 002406           88 SYSINCVVK--PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHL--KSSPSFDKVEWSAMQNEARKPVLVVY  163 (927)
Q Consensus        88 S~~l~t~~k--~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L--~~~~~~~~v~~~~~~~d~~kPil~l~  163 (927)
                      ||+++|++|  ++.+|||+||||++|||+|||||||||+|||+|||+||++|  ++.+...+++|+++|||++||||+|+
T Consensus         1 S~~l~t~~k~~~~~~VDl~v~mP~~~fq~KDyln~RY~~KRA~YLa~iA~~L~~~~~~~~~~v~~~~~~gd~~kPil~l~   80 (972)
T PF03813_consen    1 SYALKTMIKSKPNLTVDLAVEMPKSLFQEKDYLNYRYFHKRALYLAYIAAHLQKKKSKLFVDVSFEYLNGDPLKPILVLR   80 (972)
T ss_pred             CcccccccccCCCCeeEEEEeCChhhcCchhhccchHHHHHHHHHHHHHHHHhhhccccceeEEEEeCCCCCCCCeEEEE
Confidence            899999999  88999999999999999999999999999999999999999  45578899999999999999999999


Q ss_pred             eCCCCCC----CCCeEEEEEecCC-CCCcccccccccCCccCCCCC----CCCCCCCCcchhhhhccChHHHHHHHHHHh
Q 002406          164 PAVKSVE----APGFFVRIIPTAA-SLFNIAKLNLKRNNVRAFNQD----GIPRATPKYNSSILEDMFLEDNAEYVEKTI  234 (927)
Q Consensus       164 p~~~~~~----~~~~~iRi~~~~~-~~F~~~rl~P~rnnvR~~~~~----~~~~pTP~YNssil~D~~~~~~l~~l~~~~  234 (927)
                      |.++...    +.+|+||||||++ ++||++||+|+|||||+....    ..++|||+||++||+||++.+|+++|+++.
T Consensus        81 p~~~~~~~~~~~~~~~iRi~~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~~~~~pTP~YNssIL~D~~~~~~l~~l~~~~  160 (972)
T PF03813_consen   81 PKGKKDSDDFSKTKFRIRIIPSIPSDTFPLSRLAPSRNNVRPSWFDEEDSSSLPPTPHYNSSILEDMLMEEHLKYLHEAS  160 (972)
T ss_pred             ECCccccccccCCcEEEEEEecCCcccCCHHhcCCCCCccCcCcccccccCCCCCCCcchHHHHHHHhHHHHHHHHHHHH
Confidence            9876432    4579999999975 999999999999999986432    256999999999999999999999999999


Q ss_pred             hChHHHHHHHHHHHHHHHhcCCCccC--CCchhHHHHHHHHHHhhc------cccCcCCcHHHHHHHHHHHHhcCCCCCC
Q 002406          235 SRWKELGEALILLKVWARQRSSIYVH--DCLNGYLISILLSYLVSL------DKINNSMKALQILRVVLDFIATSKLWNR  306 (927)
Q Consensus       235 ~~~~~f~dA~~LlkvWl~QRg~~~~~--~gf~gf~~s~lla~Ll~~------~~l~~~~SsyQifr~~l~fLa~~d~~~~  306 (927)
                      ++||+|+|||+||||||+|||++.+.  ||||||+|+|||+||+++      ++++++||||||||++|+|||++||+++
T Consensus       161 ~~~p~f~dA~iLlkvWl~QRg~~~~~~~~Gf~~f~~s~lla~Ll~~g~~~~~~~l~~~mSsyQlFr~~l~fLA~~d~~~~  240 (972)
T PF03813_consen  161 KSSPAFRDACILLKVWLRQRGFGSGISQGGFGGFEWSMLLAYLLQGGGRNGKKKLSKSMSSYQLFRAVLQFLATTDLSKK  240 (972)
T ss_pred             hcCHHHHHHHHHHHHHHhcCCCCcccCCCCcchHHHHHHHHHHHcCCCccCCcccCCCCCHHHHHHHHHHHHhccccccC
Confidence            99999999999999999999999988  999999999999999999      9999999999999999999999999999


Q ss_pred             ceeecCCCCCCCChhHHHhhhhcCCEEEeCCCCceeeccCCCHHHHHHHHHHHHHHHHHhhccCCCccccccccc-cccc
Q 002406          307 GLYFPPKGQIGVSKEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFLTK-IDFP  385 (927)
Q Consensus       307 ~i~~~~~~~~~~~~~~~~~~~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~~~d~F~~lFl~~-~~~~  385 (927)
                      |++|+..++   +.+...++++.|++||+|++|++|||++||+|+|++||+||+.|+++||+...|+|+++||++ .++.
T Consensus       241 ~l~~~~~~~---~~~~~~~~~~~~~~vf~D~sg~~Nl~~~ms~~s~~~L~~eA~~tl~lL~~~~~d~F~~lFl~~~~~~~  317 (972)
T PF03813_consen  241 PLFFKSSSD---STESLEEFHSAFDPVFVDPSGGLNLLAKMSPSSYEELQHEAKLTLELLDDSSDDGFDSLFLTKVDPPA  317 (972)
T ss_pred             ceEEecCCC---ccchhhhhhccCCeEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHHHhccccccchhhhhcccCCccc
Confidence            999988754   445678899999999999999999999999999999999999999999999999999999999 5778


Q ss_pred             ccCcEEEEeecCCcccccccccCCchhhHH-HHHHHHHHHHHHhhccccceEEEEecCCCCcccccCCCccCCCCceEEE
Q 002406          386 AKYDYCVRLNLRGHTEVHALGFCLDDECWR-LYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVG  464 (927)
Q Consensus       386 ~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~lL~raLgdR~~~I~~~~~~~~~~w~i~~~~~~~~~~~l~vG  464 (927)
                      .+||++++|...............+...+. .+..+|+++|+||||||+++|++. .++.++|++.+.++.....+++||
T Consensus       318 ~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lL~raLgdR~~~i~v~-~~~~~~w~i~~~~~~~~~~~l~vG  396 (972)
T PF03813_consen  318 LRFDHVLRISPDSLLSSFSPDESLDFLSFSNYLLRKIYRLLKRALGDRAKLIRVL-RPSQPPWSISSKPPKSKPKTLTVG  396 (972)
T ss_pred             ccCCEEEEEcchhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHeEEEe-CCCCCCcccCCCCCCCCCceEEEE
Confidence            999999999322111111111111222222 467899999999999999999997 777899999988776555589999


Q ss_pred             EEecCccccchhcccCCCCCCHHHHHHHHhhhcCcccccccCCCCeEEEEeccCCcccccchHHHHHHHHHHHcCCCCCC
Q 002406          465 ISVSSLEKLFRIVDIGPNAENKEEALRFRKFWGEKAELRRFKDGTIAESTVWESEQWTRHLILKGIIEYVLLRHLSLSKE  544 (927)
Q Consensus       465 l~l~~~~~a~r~vd~GP~ad~~~eA~~FR~FWG~KsELRRFkDGsI~EsVvW~~~~~~r~~I~~~Iv~yiL~~H~~i~~~  544 (927)
                      ++| ||+||+|+||+||+|||++||++||+|||+||||||||||||+|||||+.  .+|+.||+|||+|||++|++++.+
T Consensus       397 l~l-n~~~~~r~vd~GP~a~d~~ea~~FR~FWG~KsELRRFkDGsI~EsVvWs~--~~~~~I~~~Iv~yiL~~H~~~~~~  473 (972)
T PF03813_consen  397 LIL-NPENAFRLVDRGPSAEDKEEAAAFREFWGEKSELRRFKDGSICESVVWSS--AERRLIPEQIVRYILQRHLKIPSD  473 (972)
T ss_pred             EEE-chhhceeeeeeCcCCcCcHHHHHHHHHhCchhhhcccCCCCEEEEEecCC--CCCCchHHHHHHHHHHHhcCCccc
Confidence            999 59999999999999998899999999999999999999999999999955  688999999999999999999999


Q ss_pred             cEEEecccchhhhccC----CCCccchHHHHHHHHHHHHHHHhccCCCCeeeeecccCCcccccccCCCCCCCCCccccc
Q 002406          545 NVVQIVDQLDFSLLHG----AKDLVSFSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERH  620 (927)
Q Consensus       545 ~i~~~~~~~d~~l~~~----~~~~~~~~~~v~~af~~L~k~Lr~L~~LPL~I~~V~p~sp~lRytsv~pp~p~~~~~~~~  620 (927)
                      +|.+.++++|..+...    ......++.++++||++|+|.||+|+||||+|++|+|+||+|||||||||.|+       
T Consensus       474 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~af~~L~k~lr~L~~LPL~I~~v~p~sp~lRyts~~pp~p~-------  546 (972)
T PF03813_consen  474 SISFIGDQFDSLLPLPGSGSSPTDEESFQSVMRAFDELEKDLRSLEDLPLSITSVQPASPALRYTSVFPPVPH-------  546 (972)
T ss_pred             eEEeehhhhhhhhcCccccCCCCchHHHHHHHHHHHHHHHHHhcCccCCcceeeeccCCHhhhcCCCCCCCCc-------
Confidence            9999999999876421    22234578899999999999999999999999999999999999999999988       


Q ss_pred             cccccCCCCCCccCcEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccC------------CeeeecCCceeee
Q 002406          621 TVSRLHKLTPSCIQPLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNRWG------------MTCSATEDDADIF  688 (927)
Q Consensus       621 ~~~~~~~~~p~~~~pi~vvlqfE~SgkWPddl~AIq~~K~AF~lkIae~L~~~~~------------~~~~v~~d~lDV~  688 (927)
                             .++.|++|++||||||+|||||||++|||++|+||+++|+|.|+++++            +.+.++.+++||+
T Consensus       547 -------~~~~~~~p~~vvl~fE~S~kWPddl~AI~~~K~Af~lkiae~L~~~~~~~~~~~v~~~~~~~~~~~~~~ldV~  619 (972)
T PF03813_consen  547 -------AVPRYIPPIEVVLQFESSGKWPDDLEAIQKTKTAFLLKIAEELEKQYGDGIKARVGLDNSLSPIANQAFLDVL  619 (972)
T ss_pred             -------cccCCCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCcceeeecccccccceeccceEEEE
Confidence                   256899999999999999999999999999999999999999997776            4455566679999


Q ss_pred             c-cceeEEEEEeccchhHHHhhhc--cc---cccc--c-cchhhhHHHhhhHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 002406          689 M-SGYAFRLKILHERGLSLVKSEN--GN---KAKR--V-YSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASH  759 (927)
Q Consensus       689 ~-~G~~FRl~I~~~rE~~Ll~~~~--~~---~~~~--~-~~~~~~~~~~p~h~~~i~~l~~r~paf~~tvRLaKRWl~sh  759 (927)
                      + +||+||+||+|+||++||+++.  .+   +...  . ...+++.++.|+||++|++||+|||+|||||||+|||++||
T Consensus       620 ~~~G~~FRl~I~~~rE~~Ll~~~~~~~~~~~k~~~~~~~~~~~~~~~~~p~h~~~i~~l~~~~p~fs~tvRL~KrW~~sh  699 (972)
T PF03813_consen  620 YPEGYVFRLRIYHDREETLLKRQLKTEDGQLKQEATEALASLERRFIHLPKHTSAIHGLHTRFPSFSPTVRLAKRWLSSH  699 (972)
T ss_pred             ecCccEEEEEEecchhHHHHHHhhcccCcccchhhhHHHHHHHHHHHhhHHHHHHHHHHHhhCCchhHHHHHHHHHHHhc
Confidence            8 9999999999999999999885  22   1111  1 12244556679999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHhcCCCCCCeEEEeCCCCCCHHhHHHHHHHHHHhhhccc
Q 002406          760 LFSACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASE  839 (927)
Q Consensus       760 lLs~hi~eE~vELLva~vfl~p~p~~~P~S~~~GFlRfL~lLa~~DW~~~PLiVd~~~~lt~~~~~~i~~~F~~~R~~~~  839 (927)
                      ||++||+||+||||||++|++|+||.+|+|+++||+|||+|||+|||+++|||||+|++|+++++++|+++|.++|+   
T Consensus       700 lLs~~i~~E~vELlva~vfl~~~p~~~P~S~~~GFlRfL~lLs~~dW~~~PLiVd~~~~l~~~~~~~i~~~f~~~R~---  776 (972)
T PF03813_consen  700 LLSGHISEEAVELLVASVFLSPAPWSPPSSPQTGFLRFLHLLSTWDWREEPLIVDFNNELTEEDRAEIETNFDAWRK---  776 (972)
T ss_pred             cCcccCCHHHHHHHHHHHhcCCCCCCCCCCHhHHHHHHHHHHHhCCCCcCCEEEECCCCCCHHHHHHHHHHHHHhhc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             ccccCCCCeEEEEeCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccccccccCCCCCccccccc
Q 002406          840 ENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQVTLPTSPSFPVRSKQR  919 (927)
Q Consensus       840 ~dp~~~~p~~fIaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~s~~~l~~~~~~~~~~~~~~~~lF~~pl~~~~~~~~~~~  919 (927)
                      +||++++|+|||||++|++|..||+.+|+++|++||++|||+|+++|+...    ....+|+++|+||+++|+++-+-..
T Consensus       777 ~dp~~~~p~~~IaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~sl~~l~~~~----~~~~~~~~lF~~~l~~YD~vI~L~~  852 (972)
T PF03813_consen  777 IDPAMNLPAMFIATPYDPEGSLWTRNGPSKVVAKRLTALAKASLKLLEEQG----LSDLDWKSLFRPPLSDYDFVIHLNP  852 (972)
T ss_pred             cCccccCCcEEEEeCCCCCCCEeECCCCCHHHHHHHHHHHHHHHHHHHhcC----CCCCCHHHhcCCCccCCCEEEEecC
Confidence            599999999999999999999999999999999999999999999998432    2367999999999999987655444


Q ss_pred             c
Q 002406          920 E  920 (927)
Q Consensus       920 ~  920 (927)
                      .
T Consensus       853 ~  853 (972)
T PF03813_consen  853 K  853 (972)
T ss_pred             c
Confidence            3

In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query927
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 60.3 bits (145), Expect = 3e-09
 Identities = 109/658 (16%), Positives = 188/658 (28%), Gaps = 208/658 (31%)

Query: 99  VNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPS--------FDKVEWSA 150
           V  D FV    +C   +D        +          H+  S          F  +    
Sbjct: 24  VFEDAFVD-NFDCKDVQDMPKSILSKEEI-------DHIIMSKDAVSGTLRLFWTLL--- 72

Query: 151 MQNEARKPVLVVYPAVKSVEAP--GFFVRII------PTAASLFNIAKLNLKRNNVRAFN 202
                 K   +V   V+ V      F +  I      P+  +   I + +   N+ + F 
Sbjct: 73  -----SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 203 QDGIPRATPKYNSSILEDMFLEDN-AEYVE--------KTISRWKEL-GEALILLKVWAR 252
           +  + R  P      L    LE   A+ V         KT      +  +          
Sbjct: 128 KYNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTW-----VALDVC-------- 171

Query: 253 QRSSIYVHDCLNG--YLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYF 310
              S  V   ++   + ++     L + +     ++ LQ L   +D   TS+  +     
Sbjct: 172 --LSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDH---SS 221

Query: 311 PPKGQIGVSKEEKL------QYKEAFPVV--ICDPSAQVNLAFRMTSVGFCELQDEAAST 362
             K +I   + E         Y+    V+  + +  A  N AF                 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WN-AF----------------N 263

Query: 363 LQCMDKCGDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVH 422
           L C          +  LT           V   L   T  H     LD     L   +V 
Sbjct: 264 LSC----------KILLT------TRFKQVTDFLSAATTTH---ISLDHHSMTLTPDEVK 304

Query: 423 SLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSL------------ 470
           SLL        K +    ++ P E        VL   P  + I   S+            
Sbjct: 305 SLL-------LKYLDCRPQDLPRE--------VLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 471 ---EKLFRIVDIGPNAENKEEALRFRK-FWGEKAELRRFKDGT-IAEST---VW-ESEQW 521
              +KL  I++   N     E   +RK F      L  F     I       +W +  + 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAE---YRKMFD----RLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 522 TRHLILKGIIEYVLL-RHLSLSKENVVQIVDQLDFSLLHGAKDLVSFSASLLEAFEVLSK 580
              +++  + +Y L+ +     KE+ + I   +   L    ++  +   S+++ + +   
Sbjct: 403 DVMVVVNKLHKYSLVEKQ---PKESTISIPS-IYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 581 RL-------------------HLIEDIPLKISSVQP---LDSAFRFTSVFPPEPHPLANE 618
                                HL      +  ++     LD  FRF          L  +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRF----------LEQK 506

Query: 619 -RHTVSRLHKLTPSCIQPLEVMIQLEG-----SGNWPMDHVAIEKTKSAFLIKIGESL 670
            RH  +  +         L  + QL+        N P     +      FL KI E+L
Sbjct: 507 IRHDSTAWNASGSI----LNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENL 559
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query927
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 99.93
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 99.9
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 99.4
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 99.27
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 99.23
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 99.06
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 98.9
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 98.72
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 98.65
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 98.35
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 98.34
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 97.35
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 97.35
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 96.68
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 96.67
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 96.22
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 96.19
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 96.03
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 95.09
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 94.59
1r89_A 437 TRNA nucleotidyltransferase; CCA adding enzyme, in 94.57
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 94.31
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 89.82
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 88.98
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
Probab=99.93  E-value=1.4e-24  Score=253.19  Aligned_cols=302  Identities=16%  Similarity=0.209  Sum_probs=221.9

Q ss_pred             ceeeEeeeeecccccCCCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhhccCCCCCceEeecCCCCCcceeE
Q 002406           81 KTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVL  160 (927)
Q Consensus        81 ~~v~vvGS~~l~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L~~~~~~~~v~~~~~~~d~~kPil  160 (927)
                      ..|.++|||++|+. .|+.+||++|.+|+.+.. +||            ++.+++.|++.+...++.+.   .+++.|||
T Consensus        82 ~~V~~FGSy~lG~~-~p~SDID~~v~~p~~~~~-~df------------f~~l~~~L~~~~~v~~v~~I---~~A~VPII  144 (530)
T 2hhp_A           82 GKIFTYGSYRLGVH-GPGSDIDTLVVVPKHVTR-EDF------------FTVFDSLLRERKELDEIAPV---PDAFVPII  144 (530)
T ss_dssp             CEEEEEHHHHHTCC-CTTCCEEEEEEECTTCCH-HHH------------HHHHHHHHHTCTTEEEEEEE---TTSSSCEE
T ss_pred             ceEEEecccccCCC-CCCCceeEEEecCCcCCH-HHH------------HHHHHHHHhcCCCCceEEEe---cCCcccEE
Confidence            36779999999987 678999999999998865 354            45677888876666666654   88999999


Q ss_pred             EEEeCCCCCCCCCeEEEEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhhccCh--------HHHHHHHHH
Q 002406          161 VVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFL--------EDNAEYVEK  232 (927)
Q Consensus       161 ~l~p~~~~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~--------~~~l~~l~~  232 (927)
                      .+.+.       ++.|.|.++..+   ..+ .|...++              -|.++|.++-.        ....+++.+
T Consensus       145 K~~~~-------gi~vDL~f~~~~---~~~-ip~~l~l--------------~~~~~L~~ld~~~~~slng~r~~d~I~~  199 (530)
T 2hhp_A          145 KIKFS-------GISIDLICARLD---QPQ-VPLSLTL--------------SDKNLLRNLDEKDLRALNGTRVTDEILE  199 (530)
T ss_dssp             EEEET-------TEEEEEEEEECS---SSC-BCTTCCS--------------CCGGGGTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEC-------CEeeEEEEeccc---ccc-CCcccCC--------------CchhhhhccchhhhhccchHHHHHHHHH
Confidence            99974       478998886321   111 2322222              22233333221        123456677


Q ss_pred             HhhChHHHHHHHHHHHHHHHhcCCCcc-CCCchhHHHHHHHHHHhhccccCcCCcHHHHHHHHHHHHhcCCCCCCceeec
Q 002406          233 TISRWKELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFP  311 (927)
Q Consensus       233 ~~~~~~~f~dA~~LlkvWl~QRg~~~~-~~gf~gf~~s~lla~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~  311 (927)
                      ...+.++|+++++++|.||+|||++.+ .||+||+.|+||++++||   +.+.+|++||++.++++++++||. +||.++
T Consensus       200 ~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQ---l~P~~s~~~LL~~FF~~y~~~dw~-~pV~l~  275 (530)
T 2hhp_A          200 LVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ---LYPNACSAVILNRFFIILSEWNWP-QPVILK  275 (530)
T ss_dssp             HSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHHCCTT-SCEESS
T ss_pred             HccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHhcCCCC-CceEec
Confidence            788899999999999999999999876 688999999999999999   788999999999999999999996 699887


Q ss_pred             CCCCCCCC------hhHHHhhhhcCCEEEeCCCCceeeccCCCHHHHHHHHHHHHHHHHHhhcc--CCCccccccccccc
Q 002406          312 PKGQIGVS------KEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFLTKID  383 (927)
Q Consensus       312 ~~~~~~~~------~~~~~~~~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~--~~d~F~~lFl~~~~  383 (927)
                      ..+++...      ..+..+.++.++| +.+..+.+|++++++.++++.|++|++++.++|++.  +.+.|+.||+ +.+
T Consensus       276 ~~~~g~~~~~~w~p~~~~~d~~~~m~I-i~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~-~~~  353 (530)
T 2hhp_A          276 PIEDGPLQVRVWNPKIYAQDRSHRMPV-ITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFE-KND  353 (530)
T ss_dssp             CCCCCSSCSCCCCTTTCHHHHTCSSCE-ECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC-CCC
T ss_pred             ccCCCCccccccCcccCCCCCccceeE-ECCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHcC-CCC
Confidence            54333221      1123344555664 467789999999999999999999999999999985  5689999997 789


Q ss_pred             ccccCcEEEEeecCCcccccccccCCchhhHHHH-HHHHHHHHHHhhccccceEEE
Q 002406          384 FPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLY-EQKVHSLLNQGLVDRAKSIRV  438 (927)
Q Consensus       384 ~~~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~lL~raLgdR~~~I~~  438 (927)
                      |..+||+++.|.+...      ....+...|..+ +.++..++ ..|.. ...|..
T Consensus       354 ff~~y~~~l~i~~~~~------g~~~~~~~w~G~veSr~r~Lv-~~Le~-~~~i~~  401 (530)
T 2hhp_A          354 FFFRYKFYLEITAYTR------GSDEQHLKWSGLVESKVRLLV-MKLEV-LAGIKI  401 (530)
T ss_dssp             HHHHCSEEEEEEEEEE------SCHHHHHHHHHHHHHHHHHHH-HHHHT-STTEEE
T ss_pred             hHHhcCeEEEEEEEec------CCHHHHhhhcchHHHHHHHHH-HHhhc-ccCcee
Confidence            9999999999985431      001122345443 45555554 55653 554543
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query927
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.32
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.28
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 98.1
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 95.47
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 94.87
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 94.27
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 91.45
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 90.02
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 89.16
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 86.67
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 86.5
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 83.47
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=8.6e-12  Score=119.47  Aligned_cols=138  Identities=13%  Similarity=0.151  Sum_probs=113.2

Q ss_pred             ChHHHHHHHHHHHHHHHhcCCCcc-CCCchhHHHHHHHHHHhhccccCcCCcHHHHHHHHHHHHhcCCCCCCceeecCCC
Q 002406          236 RWKELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKG  314 (927)
Q Consensus       236 ~~~~f~dA~~LlkvWl~QRg~~~~-~~gf~gf~~s~lla~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~  314 (927)
                      +..+|+.|++.+|.|+++||++++ .|.+||..|+||+|.+||   +.+..|+-+|+..++...|++|| .+||.++...
T Consensus         2 n~~~Fr~alR~IK~WAk~RGIYsn~~GylGGI~waILvArvCq---l~p~a~~~~ll~~FF~~ys~W~W-p~PV~l~~~~   77 (150)
T d2q66a1           2 KPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ---LYPNACSAVILNRFFIILSEWNW-PQPVILKPIE   77 (150)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHHCCT-TSCEESSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHhCCCC-CCceeccCcc
Confidence            346899999999999999998876 466799999999999999   88899999999999999999999 4698887654


Q ss_pred             CCCCC------hhHHHhhhhcCCEEEeCCCCceeeccCCCHHHHHHHHHHHHHHHHHhhcc--CCCcccccc
Q 002406          315 QIGVS------KEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETF  378 (927)
Q Consensus       315 ~~~~~------~~~~~~~~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~--~~d~F~~lF  378 (927)
                      +....      ..+..+-.+.+||+ .-..-.+|.+.++|.++++.|+.|-+++.+++++.  +...++.||
T Consensus        78 ~~~~~~~~w~p~~~~~d~~~~MpIi-TPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~~W~~Lf  148 (150)
T d2q66a1          78 DGPLQVRVWNPKIYAQDRSHRMPVI-TPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLF  148 (150)
T ss_dssp             CCCTTSCCCCTTTCHHHHTCSSCEE-CSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHT
T ss_pred             cccccCCCCCCCCCCCCccccccee-cCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            33221      11233444557775 77788999999999999999999999999999874  455677777
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure