Citrus Sinensis ID: 002413

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920------

MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccEEHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccHHHcHHcccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHcccccccccEEEEEcccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEccccHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccEEEEEcc

ccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEHEEccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccccccccccccHHHcccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHccccHccccccccccccccccHHHHEEEEEEcHHHHHHEcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccEHEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccHHHHHEEcccHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccccEEEEEEEcccHHHHHHHHHHHHcccHcccEEEEEEEEccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccEEEEEEc

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

mdnedieggEEEFRAQLGRKYRPVVAHDRAVLQmssmdpgstsdsspknvKIDGKenigsdaregsapdnlrvngserdsklelFGFDSLVNILGlrsmtgeqivapsspregrdgedAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQtmglgnlkpniVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIaeedsdaeVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRllivrgyrrdvvtlft

MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQmssmdpgstsdsspKNVKIDGKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGtlaatltttalYVISVLLFGAAatreelltdrlltatIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGlmlllsqlllTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLppppINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

*********************************************************************************LELFGFDSLVNILGLRSM*******************************VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTAT******PSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGS**********RSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSW***************AFIAAQHRIKNYLA******************PVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLF*

*************************************************************************************************************************************GTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDG****************ATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIW*****TEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCI***************KFLYDLRMQAEVIVISMK******************FIAAQHRIKNYLAEMKA**************PVVVNEQQVEKFLYT***************AVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

*************RAQLGRKYRPVVAHDRAVLQMS*************NVKIDGKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIV***********EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSW**********DESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

*******************KYRPVVAHDRAVLQ******************************************SERDSKLELFGFDSLVNILGLRSMTGEQIVAP**********************DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEA******LMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		926	2.2.26 [Sep-21-2011]
Q2UVJ5		975	Cation-chloride cotranspo	yes	no	0.968	0.92	0.753	0.0
Q6Z0E2		989	Cation-chloride cotranspo	yes	no	0.982	0.920	0.699	0.0
Q657W3		994	Cation-chloride cotranspo	yes	no	0.974	0.907	0.687	0.0
Q9JIS8		1085	Solute carrier family 12	yes	no	0.846	0.722	0.320	1e-133
Q28677		1085	Solute carrier family 12	no	no	0.847	0.723	0.318	1e-132
Q9UP95		1085	Solute carrier family 12	yes	no	0.882	0.752	0.312	1e-131
Q63632		1085	Solute carrier family 12	yes	no	0.846	0.722	0.319	1e-131
Q7YRU6		1106	Solute carrier family 12	no	no	0.926	0.775	0.294	1e-117
Q924N4		1150	Solute carrier family 12	no	no	0.603	0.486	0.334	2e-96
Q9UHW9		1150	Solute carrier family 12	no	no	0.604	0.486	0.333	5e-96

>sp\|Q2UVJ5\|CCC1_ARATH Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1	Back alignment and function desciption

 Score = 1398 bits (3619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 726/963 (75%), Positives = 811/963 (84%), Gaps = 66/963 (6%)

Query: 18  GRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKENIGSDAREGSAPDNLRVNGSE 77
           G KYRPVVAHDRAV++MSS+DP  +S S+ KN+K+    ++G+  R    P++  VNG +
Sbjct: 25  GSKYRPVVAHDRAVVEMSSIDP-GSSSSTLKNIKVVAPGDVGAGVR---GPED-GVNGHQ 79

Query: 78  RDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAPITYGPPKPSDVKLGTLM 137
           ++SKLELFGFDSLVNILGL+SMTGEQI APSSPR   DGED  IT G PKP  +K+GT+M
Sbjct: 80  KESKLELFGFDSLVNILGLKSMTGEQIQAPSSPR---DGEDISITQGHPKPPALKMGTMM 136

Query: 138 GVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197
           GVF+PCLQNILGIIYYIRFTWIVGM GIG  L++V  CG CTFLT+ISLSAIATNGAMKG
Sbjct: 137 GVFVPCLQNILGIIYYIRFTWIVGMAGIGQGLVLVFLCGLCTFLTTISLSAIATNGAMKG 196

Query: 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVN 257
           GGPYYLIGRALGPEVG+SIGLCFFLGNAVAGA+YVLGAVETFLKA PAAG+FRETITKVN
Sbjct: 197 GGPYYLIGRALGPEVGISIGLCFFLGNAVAGALYVLGAVETFLKAFPAAGIFRETITKVN 256

Query: 258 GTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGI 317
           GTA  E IQSP+ HDLQ+YGI+VTI+LCFIVFGGVK+INRVAP FL+PVLLSIFCIF+GI
Sbjct: 257 GTAVSESIQSPNSHDLQVYGIVVTILLCFIVFGGVKMINRVAPAFLVPVLLSIFCIFIGI 316

Query: 318 LLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTG 377
            LA  DDP  GITGL+LK+FKDNW S YQ TN+AGIPDP G   WSFN LVGLFFPAVTG
Sbjct: 317 FLAKTDDPDNGITGLRLKSFKDNWGSAYQMTNDAGIPDPTGGTYWSFNELVGLFFPAVTG 376

Query: 378 IMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIA 437
           IMAGSNRSASLKDTQ+SIP+GTLAATLTTT+LY+ISVL FGA ATR++LLTDRLLTATIA
Sbjct: 377 IMAGSNRSASLKDTQKSIPVGTLAATLTTTSLYLISVLFFGAVATRDKLLTDRLLTATIA 436

Query: 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFT 497
           WPFPA++H+GIILSTLGAALQSLTGAPRLLAAIANDDILP+LNYFKVA+  EPHIAT FT
Sbjct: 437 WPFPAIVHVGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADTSEPHIATLFT 496

Query: 498 AFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLL 557
           AFICIGCV+IGNLDLITPT+TMF+LLCYSGVNLSCFLLDLLDAPSWRPRWK+HHWSLS +
Sbjct: 497 AFICIGCVVIGNLDLITPTVTMFYLLCYSGVNLSCFLLDLLDAPSWRPRWKYHHWSLSFV 556

Query: 558 GSVFCI-----------------ANQVH----------------PKNWYPIPLIFCRPWG 584
           G+  CI                 A+ ++                   ++ + L   R  G
Sbjct: 557 GASLCIVIMFLISWSFTVVAIALASLIYKYVGLKGKAGDWGDGFKSAYFQLALRSLRSLG 616

Query: 585 K---LPEN------VPCHP------------KLADFANCMKKKGRGMSIFVSILDGDYHE 623
                P+N      V C P            KLADFANCMKKKGRGMSIFVSILDGDY+E
Sbjct: 617 ANQVHPKNWYPIPLVFCRPWGQLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYYE 676

Query: 624 CAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 683
           CAE+AK ACKQLATYI+YKRCEGVAEIVVAPNM+EGFRGI+QTMGLGNLKPNIVVMRYPE
Sbjct: 677 CAEEAKEACKQLATYIEYKRCEGVAEIVVAPNMTEGFRGIIQTMGLGNLKPNIVVMRYPE 736

Query: 684 IWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLM 743
           IWRRENLTEIP+TFVGIINDCI ANKAVVI+KGLDEWPNEYQRQYGTIDLYWIVRDGGLM
Sbjct: 737 IWRRENLTEIPSTFVGIINDCITANKAVVIIKGLDEWPNEYQRQYGTIDLYWIVRDGGLM 796

Query: 744 LLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDE 803
           LLLSQLLLTKESFESCKIQ+FCIAEEDSDAE LKADVKKFLYDLRM AEVIV++MKSWD 
Sbjct: 797 LLLSQLLLTKESFESCKIQLFCIAEEDSDAEALKADVKKFLYDLRMHAEVIVVTMKSWDI 856

Query: 804 QTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYT 863
           ++E G  Q++SL+AF AAQ RI +YL E+K   ++   PL+A+GKP+VVNEQQVEKFLYT
Sbjct: 857 RSE-GNSQEDSLEAFDAAQRRISDYLGEIK---RQGSNPLLANGKPMVVNEQQVEKFLYT 912

Query: 864 TLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVT 923
            LKLNSTIL +SRMAAVVLVSLPPPP+NHPAY YMEYMDLLVENVPR+LIVRGY RDVVT
Sbjct: 913 MLKLNSTILSYSRMAAVVLVSLPPPPLNHPAYFYMEYMDLLVENVPRMLIVRGYHRDVVT 972

Query: 924 LFT 926
           LFT
Sbjct: 973 LFT 975

Cation/chloride cotransporter that mediates potassium-chloride and sodium-chloride cotransports. Involved in plant development and Cl(-) homeostasis. May be involved in long distance Cl(-) transport. Does not function as an H(+)-dependent cotransporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6Z0E2\|CCC1_ORYSJ Cation-chloride cotransporter 1 OS=Oryza sativa subsp. japonica GN=CCC1 PE=2 SV=1	Back alignment and function description

>sp\|Q657W3\|CCC2_ORYSJ Cation-chloride cotransporter 2 OS=Oryza sativa subsp. japonica GN=CCC2 PE=2 SV=2	Back alignment and function description

>sp\|Q9JIS8\|S12A4_MOUSE Solute carrier family 12 member 4 OS=Mus musculus GN=Slc12a4 PE=1 SV=2	Back alignment and function description

>sp\|Q28677\|S12A4_RABIT Solute carrier family 12 member 4 OS=Oryctolagus cuniculus GN=SLC12A4 PE=1 SV=1	Back alignment and function description

>sp\|Q9UP95\|S12A4_HUMAN Solute carrier family 12 member 4 OS=Homo sapiens GN=SLC12A4 PE=1 SV=2	Back alignment and function description

>sp\|Q63632\|S12A4_RAT Solute carrier family 12 member 4 OS=Rattus norvegicus GN=Slc12a4 PE=1 SV=1	Back alignment and function description

>sp\|Q7YRU6\|S12A7_RABIT Solute carrier family 12 member 7 OS=Oryctolagus cuniculus GN=SLC12A7 PE=1 SV=1	Back alignment and function description

>sp\|Q924N4\|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus musculus GN=Slc12a6 PE=1 SV=2	Back alignment and function description

>sp\|Q9UHW9\|S12A6_HUMAN Solute carrier family 12 member 6 OS=Homo sapiens GN=SLC12A6 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		926
284449849		980	cation chloride cotransporter [Citrus cl	1.0	0.944	0.915	0.0
294715574		980	cation-chloride cotransporter [Citrus tr	1.0	0.944	0.913	0.0
359483927		976	PREDICTED: cation-chloride cotransporter	0.995	0.944	0.776	0.0
255571328		976	cation:chloride symporter, putative [Ric	0.990	0.939	0.782	0.0
356530533		994	PREDICTED: cation-chloride cotransporter	0.982	0.915	0.750	0.0
224116618		968	cation-chloride cotransporter [Populus t	0.981	0.939	0.761	0.0
356556503		992	PREDICTED: cation-chloride cotransporter	0.995	0.929	0.738	0.0
357450457		990	Solute carrier family 12 member [Medicag	0.993	0.929	0.734	0.0
190411131		988	cation-chloride cotransporter-like prote	0.994	0.932	0.739	0.0
30691713		975	cation-chloride co-transporter 1 [Arabid	0.968	0.92	0.753	0.0

>gi\|284449849\|emb\|CBJ19439.1\| cation chloride cotransporter [Citrus clementina]	Back alignment and taxonomy information

 Score = 1740 bits (4507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 897/980 (91%), Positives = 907/980 (92%), Gaps = 54/980 (5%)

Query: 1   MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKENIGS 60
           MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKEN+GS
Sbjct: 1   MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKENMGS 60

Query: 61  DAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAP 120
           DAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAP
Sbjct: 61  DAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAP 120

Query: 121 ITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTF 180
           ITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTF
Sbjct: 121 ITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTF 180

Query: 181 LTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFL 240
           LTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFL
Sbjct: 181 LTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFL 240

Query: 241 KAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAP 300
           KAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAP
Sbjct: 241 KAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAP 300

Query: 301 TFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAV 360
           TFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAV
Sbjct: 301 TFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAV 360

Query: 361 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAA 420
           DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAA
Sbjct: 361 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAA 420

Query: 421 ATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN 480
           ATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN
Sbjct: 421 ATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN 480

Query: 481 YFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDA 540
           YFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDA
Sbjct: 481 YFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDA 540

Query: 541 PSWRPRWKFHHWSLSLLGSVFCI-----------------ANQVH--------------- 568
           PSWRPRWKFHHWSLSLLGSVFCI                 A+ ++               
Sbjct: 541 PSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDG 600

Query: 569 -PKNWYPIPLIFCRPWGK---LPEN------VPCHP--KLADFANC----------MKKK 606
               ++ + L   R  G     P+N      + C P  KL +   C          MKKK
Sbjct: 601 LKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKK 660

Query: 607 GRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQT 666
           GRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQT
Sbjct: 661 GRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQT 720

Query: 667 MGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQR 726
           MGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQR
Sbjct: 721 MGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQR 780

Query: 727 QYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYD 786
           QYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYD
Sbjct: 781 QYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYD 840

Query: 787 LRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMAD 846
           LRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMAD
Sbjct: 841 LRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMAD 900

Query: 847 GKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVE 906
           GKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVE
Sbjct: 901 GKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVE 960

Query: 907 NVPRLLIVRGYRRDVVTLFT 926
           NVPRLLIVRGYRRDVVTLFT
Sbjct: 961 NVPRLLIVRGYRRDVVTLFT 980

Source: Citrus clementina

Species: Citrus clementina

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|294715574\|gb\|ADF30875.1\| cation-chloride cotransporter [Citrus trifoliata]	Back alignment and taxonomy information

>gi\|359483927\|ref\|XP_003633037.1\| PREDICTED: cation-chloride cotransporter 1 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255571328\|ref\|XP_002526613.1\| cation:chloride symporter, putative [Ricinus communis] gi\|223534053\|gb\|EEF35772.1\| cation:chloride symporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356530533\|ref\|XP_003533835.1\| PREDICTED: cation-chloride cotransporter 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|224116618\|ref\|XP_002317348.1\| cation-chloride cotransporter [Populus trichocarpa] gi\|222860413\|gb\|EEE97960.1\| cation-chloride cotransporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356556503\|ref\|XP_003546564.1\| PREDICTED: cation-chloride cotransporter 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357450457\|ref\|XP_003595505.1\| Solute carrier family 12 member [Medicago truncatula] gi\|146198492\|tpe\|CAJ38499.1\| TPA: cation chloride cotransporter [Medicago truncatula f. tricycla] gi\|355484553\|gb\|AES65756.1\| Solute carrier family 12 member [Medicago truncatula]	Back alignment and taxonomy information

>gi\|190411131\|gb\|ACE78321.1\| cation-chloride cotransporter-like protein [Lotus tenuis]	Back alignment and taxonomy information

>gi|30691713|ref|NP_174333.2| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|30691718|ref|NP_849731.1| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|30691724|ref|NP_849732.1| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|122209111|sp|Q2UVJ5.1|CCC1_ARATH RecName: Full=Cation-chloride cotransporter 1; Short=AtCCC1; AltName: Full=Protein HAPLESS 5 gi|83523648|emb|CAJ34849.1| cation chloride cotransporter [Arabidopsis thaliana] gi|110741532|dbj|BAE98715.1| putative cation-chloride co-transporter [Arabidopsis thaliana] gi|332193096|gb|AEE31217.1| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|332193097|gb|AEE31218.1| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|332193098|gb|AEE31219.1| cation-chloride co-transporter 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		926
TAIR\|locus:2028170		975	CCC1 "cation-chloride co-trans	0.599	0.569	0.726	0.0
UNIPROTKB\|Q6Z0E2		989	CCC1 "Cation-chloride cotransp	0.599	0.561	0.681	0.0
UNIPROTKB\|Q9Y666		1083	SLC12A7 "Solute carrier family	0.242	0.207	0.431	1.5e-125
ZFIN\|ZDB-GENE-090218-27		1095	slc12a4 "solute carrier family	0.309	0.262	0.380	2.9e-125
UNIPROTKB\|E1BZK3		1094	SLC12A4 "Uncharacterized prote	0.309	0.262	0.369	3.1e-125
ZFIN\|ZDB-GENE-091113-16		1119	si:dkeyp-106g6.1 "si:dkeyp-106	0.225	0.186	0.463	3.8e-125
UNIPROTKB\|F1PKH1		1046	SLC12A7 "Uncharacterized prote	0.228	0.202	0.425	1e-124
UNIPROTKB\|F1PKH5		1064	SLC12A7 "Uncharacterized prote	0.228	0.199	0.425	1.2e-124
UNIPROTKB\|F1Q2J3		1151	SLC12A6 "Uncharacterized prote	0.226	0.182	0.465	1.3e-123
UNIPROTKB\|G3V6N7		1150	Slc12a6 "RCG27287, isoform CRA	0.226	0.182	0.465	1.5e-123

TAIR\|locus:2028170 CCC1 "cation-chloride co-transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2137 (757.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 414/570 (72%), Positives = 464/570 (81%)

Query:     1 MDNEDIE----GGEEEFRA--QLG-RKYRPVVAHDRAVLQXXXXXXXXXXXXXXKNVKID 53
             MD+ DIE     GEEEFR+  +LG  KYRPVVAHDRAV++              KN+K+ 
Sbjct:     1 MDSGDIEEAGGNGEEEFRSGPRLGGSKYRPVVAHDRAVVEMSSIDPGSSSSTL-KNIKVV 59

Query:    54 GKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREG 113
                ++G+  R    P++  VNG +++SKLELFGFDSLVNILGL+SMTGEQI APSSPR  
Sbjct:    60 APGDVGAGVR---GPED-GVNGHQKESKLELFGFDSLVNILGLKSMTGEQIQAPSSPR-- 113

Query:   114 RDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVA 173
              DGED  IT G PKP  +K+GT+MGVF+PCLQNILGIIYYIRFTWIVGM GIG  L++V 
Sbjct:   114 -DGEDISITQGHPKPPALKMGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGIGQGLVLVF 172

Query:   174 FCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVL 233
              CG CTFLT+ISLSAIATNGAMKGGGPYYLIGRALGPEVG+SIGLCFFLGNAVAGA+YVL
Sbjct:   173 LCGLCTFLTTISLSAIATNGAMKGGGPYYLIGRALGPEVGISIGLCFFLGNAVAGALYVL 232

Query:   234 GAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVK 293
             GAVETFLKA PAAG+FRETITKVNGTA  E IQSP+ HDLQ+YGI+VTI+LCFIVFGGVK
Sbjct:   233 GAVETFLKAFPAAGIFRETITKVNGTAVSESIQSPNSHDLQVYGIVVTILLCFIVFGGVK 292

Query:   294 IINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGI 353
             +INRVAP FL+PVLLSIFCIF+GI LA  DDP  GITGL+LK+FKDNW S YQ TN+AGI
Sbjct:   293 MINRVAPAFLVPVLLSIFCIFIGIFLAKTDDPDNGITGLRLKSFKDNWGSAYQMTNDAGI 352

Query:   354 PDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVIS 413
             PDP G   WSFN LVGLFFPAVTGIMAGSNRSASLKDTQ+SIP+G           Y+IS
Sbjct:   353 PDPTGGTYWSFNELVGLFFPAVTGIMAGSNRSASLKDTQKSIPVGTLAATLTTTSLYLIS 412

Query:   414 VLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIAND 473
             VL FGA                IAWPFPA++H+GIILSTLGAALQSLTGAPRLLAAIAND
Sbjct:   413 VLFFGAVATRDKLLTDRLLTATIAWPFPAIVHVGIILSTLGAALQSLTGAPRLLAAIAND 472

Query:   474 DILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCF 533
             DILP+LNYFKVA+  EPHIAT FTAFICIGCV+IGNLDLITPT+TMF+LLCYSGVNLSCF
Sbjct:   473 DILPILNYFKVADTSEPHIATLFTAFICIGCVVIGNLDLITPTVTMFYLLCYSGVNLSCF 532

Query:   534 LLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563
             LLDLLDAPSWRPRWK+HHWSLS +G+  CI
Sbjct:   533 LLDLLDAPSWRPRWKYHHWSLSFVGASLCI 562

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=ISS

GO:0015377 "cation:chloride symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008511 "sodium:potassium:chloride symporter activity" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB\|Q6Z0E2 CCC1 "Cation-chloride cotransporter 1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y666 SLC12A7 "Solute carrier family 12 member 7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-090218-27 slc12a4 "solute carrier family 12 (potassium/chloride transporters), member 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BZK3 SLC12A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-091113-16 si:dkeyp-106g6.1 "si:dkeyp-106g6.1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PKH1 SLC12A7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PKH5 SLC12A7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q2J3 SLC12A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V6N7 Slc12a6 "RCG27287, isoform CRA_a" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z0E2	CCC1_ORYSJ	No assigned EC number	0.6995	0.9827	0.9201	yes	no
Q2UVJ5	CCC1_ARATH	No assigned EC number	0.7538	0.9686	0.92	yes	no
Q657W3	CCC2_ORYSJ	No assigned EC number	0.6875	0.9740	0.9074	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsI_28779	Os08g0323700 (963 aa)
		(Oryza sativa Indica)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		926
TIGR00930		953	TIGR00930, 2a30, K-Cl cotransporter	0.0
pfam00324		473	pfam00324, AA_permease, Amino acid permease	2e-40
COG0531		466	COG0531, PotE, Amino acid transporters [Amino acid	1e-23
pfam13520		425	pfam13520, AA_permease_2, Amino acid permease	2e-13
TIGR00909		429	TIGR00909, 2A0306, amino acid transporter	3e-11
TIGR00905		473	TIGR00905, 2A0302, transporter, basic amino acid/p	1e-04
TIGR00911		501	TIGR00911, 2A0308, L-type amino acid transporter	3e-04
TIGR00907		482	TIGR00907, 2A0304, amino acid permease (GABA perme	0.003
cd10326		477	cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and	0.003

>gnl\|CDD\|233194 TIGR00930, 2a30, K-Cl cotransporter	Back alignment and domain information

 Score = 1060 bits (2743), Expect = 0.0
 Identities = 340/1004 (33%), Positives = 489/1004 (48%), Gaps = 178/1004 (17%)

Query: 50  VKIDGKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSS 109
             +D    I             + N    +   +L   D +V++LG  +           
Sbjct: 1   NTVDAVPRIEHYRNSEG-QGGPKRNRPSLEELHDLL--DKVVSLLGPLADYTNNGQGMK- 56

Query: 110 PREGRDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSL 169
             E  + EDA  T   P    VK G +MGV +PCL NI G+I ++R +WIVG  GIG SL
Sbjct: 57  --EHEEAEDAEGTKEKPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSL 114

Query: 170 LVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGA 229
           L++  C   T +T +S+SAIATNG +KGGG YYLI R+LGPE G SIGL F   NAVA A
Sbjct: 115 LIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGPEFGGSIGLIFAFANAVAVA 174

Query: 230 MYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF 289
           MYV+G  ET L       + RE     NG      I    ++D++IYG +  ++L  I F
Sbjct: 175 MYVVGFAETVLD------LLRE-----NG----SKIMVDPINDIRIYGTVTVVVLLGISF 219

Query: 290 GGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTN 349
            G++  N+    FL+ VLLSI  IFVG ++ + D PA G  GL  + F +N         
Sbjct: 220 AGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSEN--------F 271

Query: 350 NAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTAL 409
             GIP P G     F +L G+FFP+VTGI+AG+N S  LKD Q++IP GTL A LTTT +
Sbjct: 272 IPGIPGPEG----GFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVV 327

Query: 410 YVISVLLFGAAATREEL----------------------------LTDRLLTATIAWPFP 441
           Y+ SV+LFGA   R+                              L + L   ++  PFP
Sbjct: 328 YLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFP 387

Query: 442 AVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAF 499
            +I  GI  +TL +AL SL  APRL  A+  D+I P L +F    G+  EP  A   TAF
Sbjct: 388 PLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAF 447

Query: 500 ICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHH-------- 551
           I  G ++I  L+ I P I+ FFL  Y+ +N SCF   LL +P WRPR+K++H        
Sbjct: 448 IAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGA 507

Query: 552 -----------WSLSLL--GSVFCI---------------------------------AN 565
                      W  +L+       +                                   
Sbjct: 508 SLCCAIMFLISWWAALVAMVIALFLYKYVTYKKPDVNWGSSTQALSYSLALYSLLRLEEV 567

Query: 566 QVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECA 625
           + H KNW P  L+   P         C P L DFA+   K G+G+ I  S++ G   EC 
Sbjct: 568 EDHVKNWRPQCLVLTGPP-------VCRPALLDFASQFTK-GKGLMICGSVIQGPRLECV 619

Query: 626 EDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIW 685
           ++A+ A  ++ T+++  + +    +VVA ++ EG R ++Q  GLG +KPN +VM Y + W
Sbjct: 620 KEAQAAEAKIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDW 679

Query: 686 RRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEY--------------------- 724
           R+        T++GII+D   A+ AVV+V+  +  P                        
Sbjct: 680 RQAE-PRAWETYIGIIHDAFDAHLAVVVVRNSEGLPISVLQVQEELENDCSEDSIELNDG 738

Query: 725 -----------------QRQY-GTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCI 766
                            ++Q  GTID++W+V DGGL LLL  LL TK+ ++ CKI++F  
Sbjct: 739 KISTQPDMHLEASTQFQKKQGKGTIDVWWLVDDGGLTLLLPYLLTTKKVWKKCKIRIFVG 798

Query: 767 AEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIK 826
           A++D  +E  K D+   LY  R+ AEVIV+ M        N   Q ES++AF       +
Sbjct: 799 AQKDDRSEQEKKDMATLLYKFRIDAEVIVVLMDI------NAKPQTESMEAFEEMIRPFR 852

Query: 827 NYLAEMKAEAQKSGTPLMADGKPVVVNE---QQVEKFLYTTLKLNSTILRHSRMAAVVLV 883
            +  E   EA     P M   KP  + +   Q   +  Y  ++LN  +L +SR AA+V++
Sbjct: 853 LHKTEKDREA---KDPKMTWTKPWKITDAELQSNVRKSYRQVRLNELLLEYSRDAALVVL 909

Query: 884 SLPPPPIN-HPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT 926
           SLP P     P   YM ++++L E++P +L+VRG  R+V+T ++
Sbjct: 910 SLPVPRKGSIPDELYMAWLEVLSEDLPPVLLVRGNHRNVLTFYS 953

[Transport and binding proteins, Other]. Length = 953

>gnl\|CDD\|215858 pfam00324, AA_permease, Amino acid permease	Back alignment and domain information

>gnl\|CDD\|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|222193 pfam13520, AA_permease_2, Amino acid permease	Back alignment and domain information

>gnl\|CDD\|129987 TIGR00909, 2A0306, amino acid transporter	Back alignment and domain information

>gnl\|CDD\|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family	Back alignment and domain information

>gnl\|CDD\|233179 TIGR00911, 2A0308, L-type amino acid transporter	Back alignment and domain information

>gnl\|CDD\|233178 TIGR00907, 2A0304, amino acid permease (GABA permease)	Back alignment and domain information

>gnl\|CDD\|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		926
KOG2082		1075	consensus K+/Cl- cotransporter KCC1 and related tr	100.0
TIGR00930		953	2a30 K-Cl cotransporter.	100.0
KOG1288		945	consensus Amino acid transporters [Amino acid tran	100.0
KOG2083		643	consensus Na+/K+ symporter [Inorganic ion transpor	100.0
COG0833		541	LysP Amino acid transporters [Amino acid transport	100.0
KOG1286		554	consensus Amino acid transporters [Amino acid tran	100.0
PRK15049		499	L-asparagine permease; Provisional	100.0
COG1113		462	AnsP Gamma-aminobutyrate permease and related perm	100.0
PRK10746		461	putative transport protein YifK; Provisional	100.0
PRK10836		489	lysine transporter; Provisional	100.0
PRK10238		456	aromatic amino acid transporter; Provisional	100.0
PRK10249		458	phenylalanine transporter; Provisional	100.0
PRK11387		471	S-methylmethionine transporter; Provisional	100.0
PRK10197		446	gamma-aminobutyrate transporter; Provisional	100.0
KOG1287		479	consensus Amino acid transporters [Amino acid tran	100.0
TIGR00906		557	2A0303 cationic amino acid transport permease.	100.0
PF00324		478	AA_permease: Amino acid permease; InterPro: IPR004	100.0
TIGR00913		478	2A0310 amino acid permease (yeast).	100.0
TIGR00908		442	2A0305 ethanolamine permease. The three genes used	100.0
TIGR01773		452	GABAperm gamma-aminobutyrate permease. GabP is hig	100.0
TIGR00911		501	2A0308 L-type amino acid transporter.	100.0
PRK10580		457	proY putative proline-specific permease; Provision	100.0
PRK11357		445	frlA putative fructoselysine transporter; Provisio	100.0
PRK11049		469	D-alanine/D-serine/glycine permease; Provisional	100.0
PRK10655		438	potE putrescine transporter; Provisional	100.0
PRK10644		445	arginine:agmatin antiporter; Provisional	100.0
TIGR00909		429	2A0306 amino acid transporter.	100.0
TIGR00905		473	2A0302 transporter, basic amino acid/polyamine ant	100.0
PRK10435		435	cadB lysine/cadaverine antiporter; Provisional	100.0
PRK11021		410	putative transporter; Provisional	100.0
TIGR03428		475	ureacarb_perm permease, urea carboxylase system. A	100.0
TIGR03810		468	arg_ornith_anti arginine/ornithine antiporter. Mem	100.0
TIGR00907		482	2A0304 amino acid permease (GABA permease).	100.0
KOG1289		550	consensus Amino acid transporters [Amino acid tran	100.0
TIGR03813		474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	100.0
COG0531		466	PotE Amino acid transporters [Amino acid transport	100.0
TIGR00910		507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	100.0
PF13520		426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	100.0
PRK15238		496	inner membrane transporter YjeM; Provisional	100.0
TIGR00837		381	araaP aromatic amino acid transport protein. aroma	99.87
TIGR00912		359	2A0309 spore germination protein (amino acid perme	99.62
TIGR00796		378	livcs branched-chain amino acid uptake carrier. tr	99.61
PHA02764		399	hypothetical protein; Provisional	99.51
PF03222		394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.33
TIGR00814		397	stp serine transporter. The HAAAP family includes	99.31
PRK10483		414	tryptophan permease; Provisional	99.12
PRK15132		403	tyrosine transporter TyrP; Provisional	99.1
COG0814		415	SdaC Amino acid permeases [Amino acid transport an	99.08
PRK09664		415	tryptophan permease TnaB; Provisional	99.0
PRK13629		443	threonine/serine transporter TdcC; Provisional	98.75
PF03845		320	Spore_permease: Spore germination protein; InterPr	98.64
KOG1303		437	consensus Amino acid transporters [Amino acid tran	98.44
PTZ00206		467	amino acid transporter; Provisional	98.42
PF01235		416	Na_Ala_symp: Sodium:alanine symporter family; Inte	98.38
PLN03074		473	auxin influx permease; Provisional	98.28
COG1115		452	AlsT Na+/alanine symporter [Amino acid transport a	98.0
PF01490		409	Aa_trans: Transmembrane amino acid transporter pro	97.95
TIGR00835		425	agcS amino acid carrier protein. Members of the AG	97.84
KOG1304		449	consensus Amino acid transporters [Amino acid tran	97.84
PF05525		427	Branch_AA_trans: Branched-chain amino acid transpo	97.66
PF01566		358	Nramp: Natural resistance-associated macrophage pr	97.57
COG1114		431	BrnQ Branched-chain amino acid permeases [Amino ac	97.4
COG1457		442	CodB Purine-cytosine permease and related proteins	97.18
PRK00701		439	manganese transport protein MntH; Reviewed	97.08
PRK15433		439	branched-chain amino acid transport system 2 carri	97.08
COG0733		439	Na+-dependent transporters of the SNF family [Gene	96.93
PRK11017		404	codB cytosine permease; Provisional	96.92
PRK11375		484	allantoin permease; Provisional	96.83
COG3949		349	Uncharacterized membrane protein [Function unknown	96.73
COG0591		493	PutP Na+/proline symporter [Amino acid transport a	96.57
TIGR00800		442	ncs1 NCS1 nucleoside transporter family. The NCS1	96.5
TIGR02358		386	thia_cytX probable hydroxymethylpyrimidine transpo	96.1
COG1914		416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	94.88
PRK09442		483	panF sodium/panthothenate symporter; Provisional	94.45
TIGR02119		471	panF sodium/pantothenate symporter. Pantothenate (	93.31
KOG1305		411	consensus Amino acid transporter protein [Amino ac	92.63
PF00474		406	SSF: Sodium:solute symporter family; InterPro: IPR	92.33
TIGR00813		407	sss transporter, SSS family. have different number	90.82
PF02705		534	K_trans: K+ potassium transporter; InterPro: IPR00	90.37
KOG2082		1075	consensus K+/Cl- cotransporter KCC1 and related tr	89.81
PRK15419		502	proline:sodium symporter PutP; Provisional	89.27
PRK09395		551	actP acetate permease; Provisional	89.13
COG4147		529	DhlC Predicted symporter [General function predict	88.62
TIGR02121		487	Na_Pro_sym sodium/proline symporter. This family c	87.78
PF00209		523	SNF: Sodium:neurotransmitter symporter family; Int	87.48
PRK12488		549	acetate permease; Provisional	84.58
TIGR03648		552	Na_symport_lg probable sodium:solute symporter, VC	84.22
TIGR02711		549	symport_actP cation/acetate symporter ActP. Member	83.98
PF02133		440	Transp_cyt_pur: Permease for cytosine/purines, ura	83.78
PRK09928		679	choline transport protein BetT; Provisional	83.34
PLN00149		779	potassium transporter; Provisional	82.26
TIGR00794		688	kup potassium uptake protein. Proteins of the KUP	80.78
PRK10745		622	trkD potassium transport protein Kup; Provisional	80.61

>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=7.1e-157  Score=1300.38  Aligned_cols=835  Identities=43%  Similarity=0.758  Sum_probs=712.5

Q ss_pred             cccccccccCccccccccccccCCCCCcCCCCCCCCCCCCCCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhh
Q 002413           77 ERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRF  156 (926)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~  156 (926)
                      ++...+.+...|...+...+.+....+......+.   ++++....-|+++..+.++|+++|||+||++||+|+++|+|+
T Consensus        61 ~kn~~l~~~~~dt~p~issl~s~la~ytn~t~g~~---e~e~~~~~~g~~~~~a~~mGt~mGVyLPclQnIlGVilFiRL  137 (1075)
T KOG2082|consen   61 DKNSALFEEEMDTRPMISSLLSKLANYTNLTPGPK---EHEEAEEHEGRRPAKAARMGTLMGVYLPCLQNILGVILFIRL  137 (1075)
T ss_pred             CchhHHHHhhhccCcchHHHHHHHHhhccCCCCCC---chhhcccccCCCCCCccccceeeeeeHHHHHHHHHHHHHHHH
Confidence            34444444455555555555554444443333343   344444455677888899999999999999999999999999


Q ss_pred             hhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 002413          157 TWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAV  236 (926)
Q Consensus       157 g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~  236 (926)
                      .|++|.||.+++++++++|++++++|++|++++||||.+.+||.|++|||++||+||.++|.+||++++++.|||++|.+
T Consensus       138 tWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYLgtT~AaaMYIlGaV  217 (1075)
T KOG2082|consen  138 TWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGTTVAAAMYILGAV  217 (1075)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhhhhHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-hcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002413          237 ETFLK-AVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV  315 (926)
Q Consensus       237 e~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iii  315 (926)
                      |.+.. ++|..++++..-+.        .-.....++.++++++++++.++|.+.|||+..+++.++.++++++|+.+++
T Consensus       218 Ei~L~Yi~P~aaIf~~~~a~--------~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiya  289 (1075)
T KOG2082|consen  218 EIFLTYIFPAAAIFGAEDAH--------DEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIYA  289 (1075)
T ss_pred             HHHHHHHccHhhhcCccccc--------cchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99887 58887776531111        1123567888999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCC------------------------------------------------------------CCCccccccc
Q 002413          316 GILLASKDDP------------------------------------------------------------APGITGLKLK  335 (926)
Q Consensus       316 g~~~~~~~~~------------------------------------------------------------~~~~~g~~~~  335 (926)
                      |.+....+.+                                                            -.|++|+...
T Consensus       290 G~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~GipG~a~g  369 (1075)
T KOG2082|consen  290 GGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIPGLASG  369 (1075)
T ss_pred             hhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccccccceeecCCcchhhh
Confidence            8775433210                                                            1278899999


Q ss_pred             ccccccccccccCC--------CCCCCCC------CCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHH
Q 002413          336 TFKDNWFSDYQKTN--------NAGIPDP------NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLA  401 (926)
Q Consensus       336 ~~~~n~~~~~~~~~--------~~g~~~~------~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~  401 (926)
                      +|.+||+|.|...+        ..+.+.+      .+...++|...++++||++|||++++|+|||+|||||+||.||+.
T Consensus       370 ~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~  449 (1075)
T KOG2082|consen  370 VFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIA  449 (1075)
T ss_pred             hhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCCccccchhhcCchhhhH
Confidence            99999999984322        1122221      123457899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccC----hhhh---ccchhhhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCC
Q 002413          402 ATLTTTALYVISVLLFGAAAT----REEL---LTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD  474 (926)
Q Consensus       402 ai~~~~v~Yil~~~~~~~~v~----~~~l---~~~~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg  474 (926)
                      |++++..+|+..++++++++.    +|..   ..+.++.+.++||.+|++.+|.++|+++++++++.++||+|||+|||+
T Consensus       450 AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~  529 (1075)
T KOG2082|consen  450 AILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDD  529 (1075)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcC
Confidence            999999999999999999987    6665   445678888999999999999999999999999999999999999999


Q ss_pred             CCCccccccc-cCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhH
Q 002413          475 ILPVLNYFKV-AEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWS  553 (926)
Q Consensus       475 ~lP~~~~~~~-~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~  553 (926)
                      ++|++..|+| .++|+|.+|++++.+||.+.+++|+++.++++.++|||+||.++|++|.+....+.|||||+|||+||.
T Consensus       530 IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~  609 (1075)
T KOG2082|consen  530 IIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWS  609 (1075)
T ss_pred             ccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhhhhH
Confidence            9999999987 567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc------------------------------------------------------cCCCCcccccceeEEE
Q 002413          554 LSLLGSVFCI------------------------------------------------------ANQVHPKNWYPIPLIF  579 (926)
Q Consensus       554 ~~~~g~i~c~------------------------------------------------------~~~~~~knw~P~~L~~  579 (926)
                      ++++|+.+|+                                                      ..++|+||||||+|++
T Consensus       610 LSflG~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEykGAeKEWGDGiRGlsLtaArysLlrlEegpPH~KNWRPQlLVl  689 (1075)
T KOG2082|consen  610 LSFLGASLCLAIMFISSWYYALVAMLIAGVIYKYIEYKGAEKEWGDGIRGLSLSAARYSLLRLEEGPPHPKNWRPQLLVL  689 (1075)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccchhhHHHHHHHHHHHhcccCCCCCCCCCceeeee
Confidence            9999999998                                                      3578999999999999


Q ss_pred             eCCCCCCCCCCCCchhHHHHHHHHHhcCceeEEEEEEEeCCCCCchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHH
Q 002413          580 CRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEG  659 (926)
Q Consensus       580 ~~~~~~~~~~~~~~~~L~~f~~~l~k~g~gl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g  659 (926)
                      .+.   .++..++||+|++|++|+| .|+|+.+++++++|++.+...+++++++++++.++..|+|+|+++++++++++|
T Consensus       690 l~~---~~~~~vk~p~ll~~asqlK-aGkGltIv~s~l~G~~~e~~~~a~~a~~t~~~~m~~~r~~Gf~q~vv~~~ir~g  765 (1075)
T KOG2082|consen  690 LRL---DEDIDVKHPRLLNFASQLK-AGKGLTIVGSVLQGTFLEDKGEAQRAEETIRTLMEAERVKGFAQTVVASNLREG  765 (1075)
T ss_pred             ecc---cchhchhhhhHhhHHHHhh-cCCCeEEEEEeecCCchhhhHHHHHHHHHHHHHHhHHHhhhhhhhhcccchhhh
Confidence            873   3445678999999999998 789999999999999999888888999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCCccEEEeeccchhcccccCCcchhHHHHHHHHHHhcccEEEEecCCCCcccccccCCceeeEEEecC
Q 002413          660 FRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRD  739 (926)
Q Consensus       660 ~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~v~i~r~~~~~p~~~~~~~g~IDvwW~~~d  739 (926)
                      +++++|++|||+|||||++++||+.||+++..+.+..|+++++++.+.++++++.||++.||.+.++..|+|||||++||
T Consensus       766 ~s~liQs~GlGglkpNtvl~~wP~~wr~e~~~~~~~tFi~~v~~~~a~~~al~v~K~i~~fP~~~er~~G~IDvwWIVhD  845 (1075)
T KOG2082|consen  766 ISHLIQSCGLGGLKPNTVLMGWPEGWRQEEDPREWKTFIETVRDTTAAHLALLVAKGIDDFPSNVERFSGHIDVWWIVHD  845 (1075)
T ss_pred             hhhceeeccccCccCceEEEeCcchhcccccchHHHHHHHHHHHhhccceeEEEecCcccCchhhhhhcCceeEEEEEec
Confidence            99999999999999999999999999999988889999999999999999999999999999999998999999999999


Q ss_pred             CchHHHHHHHhhcCCCcCCcceEEEEeecCchhHHHHHHHHHHHHHHcccCcEEEEEecCCcccccc---------CCCC
Q 002413          740 GGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTE---------NGPQ  810 (926)
Q Consensus       740 GgL~lll~~lL~~~~~W~~~klRvf~v~~~~~~~~~~~~~l~~lL~~~RI~aev~vv~~~~~~~~~~---------~~~~  810 (926)
                      ||+++|+||||++|++||+||+|+|+++|.+++.++||++++++||++||+|||.||++.++|++++         ++++
T Consensus       846 GG~lmLl~~LL~qhkvwr~C~~rif~vaq~~dns~~mk~dl~~flY~LRi~Aev~vVem~~~dis~~~~ertl~mE~rsq  925 (1075)
T KOG2082|consen  846 GGMLMLLPFLLRQHKVWRKCKMRIFTVAQEDDNSIQMKKDLQKFLYHLRIDAEVEVVEMHDSDISAYTYERTLMMEQRSQ  925 (1075)
T ss_pred             CchHHHHHHHHHHHHHHhhceeeEEEEeeccCcHHHHHHHHHHHHHhhcccceEEEEEecchhhhHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999873         1222


Q ss_pred             ChhhHHHHHHHHHhH---hhh-------------------------hHHhhHhh-hhcCCC--CcCCCCc--cccCHHHH
Q 002413          811 QDESLDAFIAAQHRI---KNY-------------------------LAEMKAEA-QKSGTP--LMADGKP--VVVNEQQV  857 (926)
Q Consensus       811 ~~~~~~~~~~~~~~~---~~~-------------------------~~~~~~~~-~~~~~~--~~~~~~~--~~~~~~~~  857 (926)
                      ..+.++.+++.+++.   .+.                         .++.+++- ....++  .+...++  ..-.++..
T Consensus       926 ~~~~m~~~k~~~~r~~l~~d~~~~~~~~s~~s~~~~~~~~~~~~~~~~~t~~k~~~~~~~~~~~~~~~k~~~~~~~~~sn 1005 (1075)
T KOG2082|consen  926 MLRQMRLSKNERERAQLIHDRNAPRRPSSLHSDEARPFETAPTKVQMTWTRDKYMASTSNPAFSLSGFKDLFSMKPDQSN 1005 (1075)
T ss_pred             HHHHHHhhhhhhhccccchhcCCccccccccccccccCCCCCcceechhhhhhHHHhccCCcchhccCCcccccChhhHH
Confidence            112222233322220   000                         00000000 000000  1111111  11123445


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccEEEEecCCCCCCC-CcccHHHHHHHhhcCCCceEEEccCCceeeeecC
Q 002413          858 EKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINH-PAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT  926 (926)
Q Consensus       858 ~~~~~~~~~lneli~~~S~~a~lv~~~LP~p~~~~-~~~~Ym~~l~~lt~~l~p~llVrG~~~~V~T~ys  926 (926)
                      .++|||++||||+|++||+||+||++|||.||+|. ...+||+|||+||++|||||||||.|+||||+||
T Consensus      1006 v~~mhTavkLN~vi~~~S~~a~lvLlnlP~PP~n~~~~~~Ymeylevlte~l~Rvl~VrG~greViTi~s 1075 (1075)
T KOG2082|consen 1006 VRRMHTAVKLNEVILNKSRDAQLVLLNLPGPPRNRQGDENYMEYLEVLTEGLPRVLLVRGGGREVITIYS 1075 (1075)
T ss_pred             HHHHHHHHHHHHHHHhcCccccEEEecCcCCCCCCcchhhHHHHHHHHHcCCCeEEEEccCCceEEEecC
Confidence            57799999999999999999999999999999996 5689999999999999999999999999999998

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PRK15049 L-asparagine permease; Provisional	Back alignment and domain information

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK10746 putative transport protein YifK; Provisional	Back alignment and domain information

>PRK10836 lysine transporter; Provisional	Back alignment and domain information

>PRK10238 aromatic amino acid transporter; Provisional	Back alignment and domain information

>PRK10249 phenylalanine transporter; Provisional	Back alignment and domain information

>PRK11387 S-methylmethionine transporter; Provisional	Back alignment and domain information

>PRK10197 gamma-aminobutyrate transporter; Provisional	Back alignment and domain information

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00906 2A0303 cationic amino acid transport permease	Back alignment and domain information

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>TIGR00913 2A0310 amino acid permease (yeast)	Back alignment and domain information

>TIGR00908 2A0305 ethanolamine permease	Back alignment and domain information

>TIGR01773 GABAperm gamma-aminobutyrate permease	Back alignment and domain information

>TIGR00911 2A0308 L-type amino acid transporter	Back alignment and domain information

>PRK10580 proY putative proline-specific permease; Provisional	Back alignment and domain information

>PRK11357 frlA putative fructoselysine transporter; Provisional	Back alignment and domain information

>PRK11049 D-alanine/D-serine/glycine permease; Provisional	Back alignment and domain information

>PRK10655 potE putrescine transporter; Provisional	Back alignment and domain information

>PRK10644 arginine:agmatin antiporter; Provisional	Back alignment and domain information

>TIGR00909 2A0306 amino acid transporter	Back alignment and domain information

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family	Back alignment and domain information

>PRK10435 cadB lysine/cadaverine antiporter; Provisional	Back alignment and domain information

>PRK11021 putative transporter; Provisional	Back alignment and domain information

>TIGR03428 ureacarb_perm permease, urea carboxylase system	Back alignment and domain information

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter	Back alignment and domain information

>TIGR00907 2A0304 amino acid permease (GABA permease)	Back alignment and domain information

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter	Back alignment and domain information

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter	Back alignment and domain information

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A	Back alignment and domain information

>PRK15238 inner membrane transporter YjeM; Provisional	Back alignment and domain information

>TIGR00837 araaP aromatic amino acid transport protein	Back alignment and domain information

>TIGR00912 2A0309 spore germination protein (amino acid permease)	Back alignment and domain information

>TIGR00796 livcs branched-chain amino acid uptake carrier	Back alignment and domain information

>PHA02764 hypothetical protein; Provisional	Back alignment and domain information

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>TIGR00814 stp serine transporter	Back alignment and domain information

>PRK10483 tryptophan permease; Provisional	Back alignment and domain information

>PRK15132 tyrosine transporter TyrP; Provisional	Back alignment and domain information

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK09664 tryptophan permease TnaB; Provisional	Back alignment and domain information

>PRK13629 threonine/serine transporter TdcC; Provisional	Back alignment and domain information

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PTZ00206 amino acid transporter; Provisional	Back alignment and domain information

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups	Back alignment and domain information

>PLN03074 auxin influx permease; Provisional	Back alignment and domain information

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)	Back alignment and domain information

>TIGR00835 agcS amino acid carrier protein	Back alignment and domain information

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))	Back alignment and domain information

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2	Back alignment and domain information

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK00701 manganese transport protein MntH; Reviewed	Back alignment and domain information

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional	Back alignment and domain information

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]	Back alignment and domain information

>PRK11017 codB cytosine permease; Provisional	Back alignment and domain information

>PRK11375 allantoin permease; Provisional	Back alignment and domain information

>COG3949 Uncharacterized membrane protein [Function unknown]	Back alignment and domain information

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>TIGR00800 ncs1 NCS1 nucleoside transporter family	Back alignment and domain information

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX	Back alignment and domain information

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK09442 panF sodium/panthothenate symporter; Provisional	Back alignment and domain information

>TIGR02119 panF sodium/pantothenate symporter	Back alignment and domain information

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]	Back alignment and domain information

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells	Back alignment and domain information

>TIGR00813 sss transporter, SSS family	Back alignment and domain information

>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members	Back alignment and domain information

>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK15419 proline:sodium symporter PutP; Provisional	Back alignment and domain information

>PRK09395 actP acetate permease; Provisional	Back alignment and domain information

>COG4147 DhlC Predicted symporter [General function prediction only]	Back alignment and domain information

>TIGR02121 Na_Pro_sym sodium/proline symporter	Back alignment and domain information

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses	Back alignment and domain information

>PRK12488 acetate permease; Provisional	Back alignment and domain information

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily	Back alignment and domain information

>TIGR02711 symport_actP cation/acetate symporter ActP	Back alignment and domain information

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines	Back alignment and domain information

>PRK09928 choline transport protein BetT; Provisional	Back alignment and domain information

>PLN00149 potassium transporter; Provisional	Back alignment and domain information

>TIGR00794 kup potassium uptake protein	Back alignment and domain information

>PRK10745 trkD potassium transport protein Kup; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		926
3g40_A		294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	1e-19
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	5e-19
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	5e-17
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	1e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Length = 294	Back alignment and structure

 Score = 89.5 bits (221), Expect = 1e-19
 Identities = 30/255 (11%), Positives = 72/255 (28%), Gaps = 31/255 (12%)

Query: 567 VHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAE 626
              + W    L+         E+        DF   +    +G    + +      E   
Sbjct: 14  SSERTWKANLLVP-------VEDPRELMGTFDFLRDITY-PKGSVKLLGLAGNTDKENLL 65

Query: 627 DAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWR 686
                   ++     +       I+      E     ++ +     +P+I+ +R PE   
Sbjct: 66  SQL---PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD 122

Query: 687 RENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRD------- 739
           R            II    +    V++     + P     +   I+L+   R        
Sbjct: 123 R------DEEIREIIRKASMYRMGVLL---FSKHPQAGLGRQNLINLWIENRGLDWDISM 173

Query: 740 --GGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVIS 797
             G + L L      K ++++  +     A     A+  +  ++      R+    + + 
Sbjct: 174 ELGNMDLALLIAYKLKSNWKA-SLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKMQVL 232

Query: 798 MKSWDEQTENGPQQD 812
            ++   ++   P   
Sbjct: 233 REN-PIKSSKLPFAS 246

PyMOL of 3g40

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445	Back alignment and structure

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511	Back alignment and structure

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		926
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	100.0
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	100.0
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	100.0
3g40_A		294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	100.0
2jln_A		501	MHP1; hydantoin, transporter, membrane protein, nu	97.91
2a65_A		519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	95.1
3dh4_A		530	Sodium/glucose cotransporter; membrane protein, sy	92.08
2xq2_A		593	Sodium/glucose cotransporter; transport protein, i	88.02

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C	Back alignment and structure

Probab=100.00  E-value=1.3e-39  Score=378.09  Aligned_cols=372  Identities=16%  Similarity=0.229  Sum_probs=303.8

Q ss_pred             cccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhC
Q 002413          130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG  209 (926)
Q Consensus       130 ~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lG  209 (926)
                      ++++|.+..+++ ...+++|+++|...+.+++.+|+ .+++.|++++++.++++++++|++++ +|.+||.|+|++|.+|
T Consensus         5 ~r~l~~~~~~~l-~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~-~P~~Gg~y~~~~~~~G   81 (444)
T 3gia_A            5 NKKLSLWEAVSM-AVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAK-IVSNAGPIAFIHKAIG   81 (444)
T ss_dssp             CCCBCHHHHHHH-HHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTT-CCCTTTHHHHHHHHHC
T ss_pred             CCcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcHHHhHHHHhC
Confidence            456777776654 23447899999999999999998 67889999999999999999999998 9999999999999999


Q ss_pred             Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 002413          210 PEV-GVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIV  288 (926)
Q Consensus       210 p~~-Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in  288 (926)
                      |.+ ++.+||.+++++.+..+.++.++++++...++..                     +..+...+++++++++++++|
T Consensus        82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~in  140 (444)
T 3gia_A           82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP---------------------INTFNIAITEIGIVAFFTALN  140 (444)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------------CchHHHHHHHHHHHHHHHHHH
Confidence            974 6778999999999999999999999998877532                     112334577888889999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHH
Q 002413          289 FGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNAL  367 (926)
Q Consensus       289 ~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~  367 (926)
                      +.|+|..++++.++..++++.++.+++ ++.....                +|+.+.+.+.           .+.+++.+
T Consensus       141 ~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~----------------~~~~~~~~~~-----------g~~~~~~~  193 (444)
T 3gia_A          141 FFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHP----------------SYVIPDLAPS-----------AVSGMIFA  193 (444)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG----------------GGTSCCCSHH-----------HHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh----------------hhcCCCCCCc-----------chHHHHHH
Confidence            999999999999999999998886554 4432211                2333322111           13467778


Q ss_pred             HHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc---hhh---hhcccCchH
Q 002413          368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD---RLL---TATIAWPFP  441 (926)
Q Consensus       368 ~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~---~~~---~~~~~~~~~  441 (926)
                      +...+++|+|+|++++++||+|||+|++|||++.++++++++|++..+.+....|++++.++   ++.   ....+....
T Consensus       194 ~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~  273 (444)
T 3gia_A          194 SAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGF  273 (444)
T ss_dssp             HHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHH
Confidence            88889999999999999999999999999999999999999999999998888898876432   111   111233445


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHH
Q 002413          442 AVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFF  521 (926)
Q Consensus       442 ~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~  521 (926)
                      .++.++++++++++++++++++||++++|||||.+|+  .+.+.++++|.+|+++++++++++.++.+++.+.++.++++
T Consensus       274 ~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~--~f~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (444)
T 3gia_A          274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELPE--FFERKVWFKSTEGLYITSALGVLFALLFNMEGVASITSAVF  351 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCS--SCCTTSCCSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHhCCCCCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999995  45443356799999999999998888889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413          522 LLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI  563 (926)
Q Consensus       522 ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~  563 (926)
                      +++|.+++++++++|+++ |+        .++.+++|++.|+
T Consensus       352 ~~~~~~~~~~~~~~r~~~-~~--------~~~~~~~~~~~~~  384 (444)
T 3gia_A          352 MVIYLFVILSHYILIDEV-GG--------RKEIVIFSFIVVL  384 (444)
T ss_dssp             HHHHHHHHHHHHHTHHHH-CC--------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcC-CC--------cchHHHHHHHHHH
Confidence            999999999999988643 22        1366777777776

PyMOL of 3gia

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A	Back alignment and structure

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A	Back alignment and structure

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}	Back alignment and structure

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A	Back alignment and structure

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...	Back alignment and structure

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}	Back alignment and structure

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		926
d2a65a1		509	Na(+):neurotransmitter symporter homologue LeuT {A	88.28

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.28  E-value=18  Score=38.64  Aligned_cols=36  Identities=14%  Similarity=0.023  Sum_probs=23.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCC
Q 002413          439 PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD  474 (926)
Q Consensus       439 ~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg  474 (926)
                      +.+.+..+..++..+-+++++..+.--.+.+.-+|.
T Consensus       331 ~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~  366 (509)
T d2a65a1         331 AGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDE  366 (509)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhccccchhHHHHHh
Confidence            445555555666666666777776666666666774

PyMOL of d2a65a1