Citrus Sinensis ID: 002439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-
Protein Sequence
MIIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTLLHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSDEES
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcHcHHEEEEEEEHEEEEEccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccccEcccccccHHHHHccccccccccHccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccccccccccccEccccEEccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcEEccccccccEHHHcccccccccHHHHHHHHHcccccccccccccccccccccEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHcccHHHccHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccEEEEEHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccHcHHHHHHHccccEEcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MIIQEEMGVMRRSCFMFLVVLLYGSLVvsseyrrtreedflckvvdpvtgevddNLAQLLWFSCGIDLIRLKEVVEDLnlclpeetpggtdesnsrsqslskpnlVKLYNALHPHLKQTLLHCirennllhhvsrgggswyeslypqpdaprqnqhlilprslaeipnrastpapapavapapvharatapatsptqdakprprtpptpffpsvssssptvgdnsttnsgsgtsaraddktnhhNTVIIAVVVTAAVTFVAAALLFLCCSrfcrtgsggrqnderpllslslsdysvgsgnskeekldigkfdgtasfgavggtaksfnengqvlpplkpppgrvgstlqgmpplkpppgraeplpheppaslrphppsgpppppppppaprpppapapaprapppppkpgppppppprggpaprppppmpsgskvprpplgqkhssssvgagaegdanapktklkpffwdkvlanpdnsmvWHQIKSGSFQFNEEMIETLFGYseksknekkkgssldtgpqYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTgnrmndgtfrggaqaFKLDTLlklsdvkgvdgktTLLHFVVQEIIRSEGVRAARRAresrsfssvktddlleetsksnetdehYRNLGLQAVSHLSSELENVKKAAaidadsltGTVSKLGHALLKTRDFLNTDmknlgensgfhETLKSFVQNAEGDIMWLLEEEKRIMSLVKStgdyfhgnagkdegLRLFTIVRDFFIMLDKACKqvkdapkkstkslkkegstassssdtpqqpspdlrhrlfpaiterrvedfssdees
Flexible Loop (DISEMBL)
miiqeemgvmrRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVEDLNLCLPeetpggtdesnsrsqslSKPNLVKLYNALHPHLKQTLLHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATApatsptqdakprprTPPTPffpsvssssptvgdnsttnsgsgtsaraddktnHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTgsggrqnderpllSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYseksknekkkgssldtgpQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKtgnrmndgtfrgGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVqeiirsegvraarraresrsfssvktddlleetsksnetdehyrNLGLQAVSHLSSELENVKKAAaidadsltgtVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACkqvkdapkkstkslkkegstassssdtpqqpspdlrhrlfpaiterrvedfssdees
Low Complexity Region (SEG)
MIIQEEMGVMRRSCFMFlvvllygslvvssEYRRTREEDFLCKVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTLLHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNrastpapapavapapvharatapaTSPTQDAKprprtpptpffpsvssssptvGDnsttnsgsgtsARADDKTNHHNtviiavvvtaavtfvaaallflCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEppaslrphppsgpppppppppaprpppapapaprapppppkpgppppppprggpaprppppmpsgskvprppLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYseksknekkkgssLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIrsegvraarraresrsfssvKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGstassssdtpqqpspdLRHRLFPAITERRVEDFSSDEES
Disordered region (IsUnstruct)
*******GVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVEDLNLCL**********************LVKLYNALHPHLKQTLLHCIRENNLLHHVSRGGGSWYESLY**************************************************************************************************HNTVIIAVVVTAAVTFVAAALLFLCCSRFCRT*********************************************************************************************************************************************************************************************LKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGY******************QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRS**********************************************************AAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACK********************************************************
Disordered Region (DISOPRED)
*******GVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVEDLNLCLPEET*********************LYNALHPHLKQTLLHCIRENNLLHHVSRGG*SWYESLYP********************************************************************************************************VVVTAAVTFVAAALLFLC********************************************************************************************************************************************************************************************************FWDKVLANPDNSMVWHQIKSGSFQFNEEMIET***************************IDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAA********************TSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSK*GHALLKT*******************TLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ*******************************************************
Disordered Region (DISEMBL)
MIIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVEDLNLCLPEE***************SKPNLVKLYNALHPHLKQTLLHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIP**************************************PPTPFF***************************DKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLSDY*********EKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEP**********************************************************************************************NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS**************TGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSE*********************************EHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACK********************************DLRHRLFPAITERR**********
Disordered Region (DISPRO)
MIIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVEDLNLCLPEETPG********SQSLSKPNLVKLYNALHPHLKQTLLHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPN************************************************************************TNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRT****RQNDERPLLSL*LS************************************************************************************************************************************************************************KTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEK***************QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSE******************************ETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTK****************************P*I**************
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTLLHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSDEES
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	921	2.2.26 [Sep-21-2011]
Q94B77	900	Formin-like protein 5 OS=	yes	no	0.943	0.965	0.539	0.0
Q0D5P3	929	Formin-like protein 11 OS	yes	no	0.499	0.495	0.582	1e-156
Q6MWG9	906	Formin-like protein 18 OS	no	no	0.439	0.447	0.593	1e-140
Q10Q99	892	Formin-like protein 8 OS=	no	no	0.474	0.489	0.485	1e-111
Q8S0F0	960	Formin-like protein 1 OS=	no	no	0.436	0.418	0.515	1e-110
Q9FJX6	899	Formin-like protein 6 OS=	no	no	0.454	0.466	0.480	1e-107
Q9MA60	884	Formin-like protein 11 OS	no	no	0.459	0.478	0.468	1e-106
Q8H8K7	849	Formin-like protein 4 OS=	no	no	0.429	0.466	0.497	1e-105
O22824	894	Formin-like protein 2 OS=	no	no	0.458	0.472	0.460	1e-100
Q9SE97	1051	Formin-like protein 1 OS=	no	no	0.422	0.370	0.458	1e-95

>sp|Q94B77|FH5_ARATH Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/947 (53%), Positives = 618/947 (65%), Gaps = 78/947 (8%)

Query: 2   IIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLW 61
           +I+  MG    S  +F ++L  G LV++ E    ++E FL + + P TG+V++++ +  W
Sbjct: 4   MIRGGMGDQNWSRLVFWLILFSGLLVITLEENPEKDEIFLSQFMAPSTGQVNEHMEETSW 63

Query: 62  FS-CGIDLIRLKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTL 120
              C  D   +KE V + NLC P     G+ +S             +L+   H +LKQTL
Sbjct: 64  AQRCWQDSDCVKEAVAEFNLCFP-----GSKDSR------------ELFGLNHTNLKQTL 106

Query: 121 LHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVA 180
           L CI+E   L+                       ++L L  S+ +IP R     P  + +
Sbjct: 107 LDCIQEKGKLN-------------------GHNPKYLELLSSMLDIPRRNLATKPGSSPS 147

Query: 181 PAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDK 240
           P+P      +            P    + F PS S   P    N++ NS S   + A  K
Sbjct: 148 PSPSRPPKRSRGPPRPPTRPKSPPPRKSSFPPSRSPPPPPAKKNASKNSTSAPVSPAKKK 207

Query: 241 TNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLS------- 293
            +H  T+IIAVVVTA  TF+ AAL FLCCSR C  GSGGR+NDERPLLSLS S       
Sbjct: 208 EDHEKTIIIAVVVTAVSTFLLAALFFLCCSRVCGNGSGGRKNDERPLLSLSSSDYSVGSS 267

Query: 294 -DY--SVGSGNSKEEKLDIGKFDG-TASF-GAVGGTAKSFNE------------NGQVLP 336
            +Y  SV       +  +I    G  +SF G+   T+ S  E                LP
Sbjct: 268 INYGGSVKGDKQGHQSFNIYSNQGKMSSFDGSNSDTSDSLEERLSHEGLRNNSITNHGLP 327

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           PLKPPPGR  S L G    K   G+ EPLP EPP  L+        PPPP P    P  A
Sbjct: 328 PLKPPPGRTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKASAPPPPVPAPQMPSSA 383

Query: 397 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 456
             P P  P PPP  G P PPPP G   PRPPPPM  G K PRPP G   +          
Sbjct: 384 GPPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPPSGPADAL--------- 434

Query: 457 DANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKK 514
           D +APKTKLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK 
Sbjct: 435 DDDAPKTKLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKG 494

Query: 515 GSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPT 574
            S     PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT
Sbjct: 495 SSGQAALPQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPT 554

Query: 575 AEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEIL 634
            EEELKLRL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ L
Sbjct: 555 PEEELKLRLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQKL 614

Query: 635 EVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLL 694
           EVACKELR SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLL
Sbjct: 615 EVACKELRGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLL 674

Query: 695 HFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSS 754
           HFVVQEIIR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGL+ VS LSS
Sbjct: 675 HFVVQEIIRTEGVRAARTIRESQSFSSVKTEDLLVEETSEESE-ENYRNLGLEKVSGLSS 733

Query: 755 ELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEG 814
           ELE+VKK+A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG
Sbjct: 734 ELEHVKKSANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEESGFREALEDFIQNAEG 793

Query: 815 DIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 874
            IM +LEEEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  + 
Sbjct: 794 SIMSILEEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRP 853

Query: 875 TKSLKKEGSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 920
            +  +K+GSTAS+SS+TP+Q PS D R +LFPAITERRV+  SSD +
Sbjct: 854 VRMARKQGSTASASSETPRQTPSLDPRQKLFPAITERRVDQSSSDSD 900

Might be involved in the organization and polarity of the actin cytoskeleton. Interacts with the barbed end of actin filaments and nucleates actin-filament polymerization in vitro. Seems to play a role in cytokinesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0D5P3|FH11_ORYSJ Formin-like protein 11 OS=Oryza sativa subsp. japonica GN=FH11 PE=2 SV=1

 Score =  554 bits (1427), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 297/510 (58%), Positives = 365/510 (71%), Gaps = 50/510 (9%)

Query: 406 PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKL 465
                              RPPPP+  G+KV                GA  ++N  KTKL
Sbjct: 454 -------------------RPPPPLKPGAKV----------------GAVENSNEAKTKL 478

Query: 466 KPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGY--SEKSKNEKKKGSSLDTGPQ 523
           KPFFWDKV ANP  SMVW  +KSGSFQFNE+++E LFGY  ++KS + KK  SS D   Q
Sbjct: 479 KPFFWDKVTANPARSMVWDHLKSGSFQFNEQLMENLFGYNSTDKSSDTKKDLSSKD-ATQ 537

Query: 524 YIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRL 583
            I+I+D KKAQNL+I LRAL V+ +EVC A+ EG+ELP++LIQTL++ +P+ +EEL+LRL
Sbjct: 538 LIRILDPKKAQNLAISLRALGVSPQEVCSAVKEGSELPSDLIQTLIRWSPSNDEELRLRL 597

Query: 584 FNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRN 643
           ++GEL QLGPAE+FL+ ++DIP+ F+RL+ALLFM  L EE S  K+SF  LEVAC+ELRN
Sbjct: 598 YSGELFQLGPAEQFLRVIIDIPYIFQRLDALLFMANLPEEASNVKQSFATLEVACQELRN 657

Query: 644 SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIR 703
           SRLF+KLLEAVLKTGNRMN GTFRGGAQAF+LDTLLKLSDVKG DGKTTLLHFVVQEIIR
Sbjct: 658 SRLFMKLLEAVLKTGNRMNVGTFRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIR 717

Query: 704 SEGVRAARRARESRS-FSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKA 762
           SEGVRA R A+E  S  SSVKTDDL     KS +T++ Y+ LGL+ +S L  EL++V+KA
Sbjct: 718 SEGVRAERAAKEQNSGVSSVKTDDL---GDKSEQTEDGYKQLGLKVISSLGDELQDVRKA 774

Query: 763 AAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEE 822
           A +DAD LT +V+ LGH L+KT +FLN DMK+L E+SGFH  L  FVQ ++ DI +LLEE
Sbjct: 775 AILDADQLTMSVASLGHKLMKTNEFLNMDMKSLDEDSGFHRKLTHFVQQSQTDITFLLEE 834

Query: 823 EKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS-TKSLKKE 881
           EK++  LVK T DYFHG+AGKDEGLRLF IVRDF  MLDK CK+VK+A K +  K+  K+
Sbjct: 835 EKKMRLLVKDTVDYFHGSAGKDEGLRLFVIVRDFLAMLDKVCKEVKEASKVAPVKAKAKQ 894

Query: 882 GSTASSSSDTPQQPSPDLRHRLFPAITERR 911
            S +  S   P       R  LFPAI   R
Sbjct: 895 PSQSLQSFRDP-------RVNLFPAIQHLR 917

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6MWG9|FH18_ORYSJ Formin-like protein 18 OS=Oryza sativa subsp. japonica GN=FH18 PE=2 SV=1

 Score =  499 bits (1284), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/431 (59%), Positives = 328/431 (76%), Gaps = 26/431 (6%)

Query: 462 KTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGY--SEKSKNEKKKGSSLD 519
           K KLKPFFWDKV ANP+ +MVW QIK+GSFQFNEEMIE+LFG   +EK   + KK S  +
Sbjct: 418 KAKLKPFFWDKVTANPNQAMVWDQIKAGSFQFNEEMIESLFGAQSTEKKSTDAKKESGKE 477

Query: 520 TGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEEL 579
              Q+++I+D KKAQNL+I L+AL+V+ E+V  A++EG++LP +LIQTL++ +PT++EEL
Sbjct: 478 -ATQFVRILDPKKAQNLAISLKALSVSAEQVRAAVMEGHDLPPDLIQTLVRWSPTSDEEL 536

Query: 580 KLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACK 639
           +LRL+ GE +QLGPAE+F++A++D+P+ ++RL+ALLFM  L EE +A ++SF  LEVAC+
Sbjct: 537 RLRLYAGEPAQLGPAEQFMRAIIDVPYLYQRLDALLFMAALPEEAAAVEQSFATLEVACE 596

Query: 640 ELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQ 699
           ELR SRLF KLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKGVDGKTTLLHFVVQ
Sbjct: 597 ELRGSRLFKKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGVDGKTTLLHFVVQ 656

Query: 700 EIIRSEGVRAARRA----RESRSFSSVKTDDLLEETSKSN-----------------ETD 738
           EIIRSEGVRAAR A      S   S   +DDL+   S+S+                 E D
Sbjct: 657 EIIRSEGVRAARAASGGGGGSSISSISSSDDLILLQSQSSIGSNSGRSSVDASSLEQEQD 716

Query: 739 --EHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLG 796
             E YR LGL  VS L  +L+NV+KAA+ DAD+LT TV+ LGH L+K  +FL+T M++L 
Sbjct: 717 ETERYRQLGLGVVSSLGDDLQNVRKAASFDADALTITVASLGHRLVKANEFLSTGMRSLE 776

Query: 797 ENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDF 856
           E+SGF   L SFVQ ++  +  LLE+EKR+ SLV++T DYFHG+ GKDEGLRLF +VRDF
Sbjct: 777 EDSGFQRRLASFVQQSQEQVTRLLEDEKRLRSLVRATVDYFHGSTGKDEGLRLFVVVRDF 836

Query: 857 FIMLDKACKQV 867
             +LDK C++V
Sbjct: 837 LGILDKVCREV 847

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1

 Score =  403 bits (1035), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/480 (48%), Positives = 303/480 (63%), Gaps = 43/480 (8%)

Query: 408 PKPGPPP-----------PPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAE- 455
           PKP  PP           P PP G   PR   PMP  +       G         A A+ 
Sbjct: 390 PKPAEPPAVPTSRRRLLKPLPPEG---PRIAMPMPITAATTVDNNGSTSMREGDNAAADD 446

Query: 456 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKS----KNE 511
           G +  P+ KLKP  WDKV A  D +MVW Q+KS SFQ +E+MIE LF  +       +  
Sbjct: 447 GGSGEPRPKLKPLHWDKVRATSDRAMVWDQLKSSSFQLDEDMIEALFMNNSTPAAPPREV 506

Query: 512 KKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLL 569
            +K + + +  Q  +++D KKAQN++I+LRALNVT EEV DALL+GN   L +EL++TL+
Sbjct: 507 GRKAAGVPSFRQEERVLDPKKAQNIAILLRALNVTREEVSDALLDGNAECLGSELLETLV 566

Query: 570 KMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKE 629
           KMAPT EEELKLR ++G+LS+LG AERFLKA++DIPF+FKR++A+L+    + E++  + 
Sbjct: 567 KMAPTKEEELKLRDYSGDLSKLGSAERFLKAVLDIPFAFKRVDAMLYRANFETEINYLRN 626

Query: 630 SFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDG 689
           SFE LE AC++LR SRLFLKLLEAVL+TGNRMN GT RG A+AFKLDTLLKL+DVKG DG
Sbjct: 627 SFETLEAACEDLRGSRLFLKLLEAVLRTGNRMNVGTNRGEAKAFKLDTLLKLADVKGTDG 686

Query: 690 KTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAV 749
           KTTLLHFVVQEIIRSE    A+  +ES   SS K D                R  GL+ V
Sbjct: 687 KTTLLHFVVQEIIRSED---AKSEKESAMISSSKDD----------------RKHGLKVV 727

Query: 750 SHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFV 809
           S LSSEL NVKKAA +D D L G V+KL   L K +  L  + K   +   F  +++ F+
Sbjct: 728 SGLSSELGNVKKAATMDFDVLHGYVNKLETGLEKIKSVLQLE-KKCTQGQRFFMSMQDFL 786

Query: 810 QNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIVRDFFIMLDKACKQV 867
           + AE +I  +  EE+R +  VK   +YFHG+  K+E   LR+F +VRDF   LD+ C++V
Sbjct: 787 KEAEREIERVRGEERRALGRVKDITEYFHGDTAKEEAHPLRIFMVVRDFLSTLDQVCREV 846

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S0F0|FH1_ORYSJ Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/425 (51%), Positives = 290/425 (68%), Gaps = 23/425 (5%)

Query: 455 EGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLF----GYSEKSKN 510
           + +   P+ KLKP  WDKV A+ D  MVW Q+KS SFQ NEEMIETLF      S   K 
Sbjct: 497 KSEETTPRPKLKPLHWDKVRASSDRVMVWDQLKSSSFQVNEEMIETLFICNPANSAPPKE 556

Query: 511 EKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTL 568
              +   L T     +++D KK+QN++I+LRALNV+ E+VCDAL EGN     AEL++TL
Sbjct: 557 PATRRPVLPTPKTDNKVLDPKKSQNIAILLRALNVSKEQVCDALCEGNTENFGAELLETL 616

Query: 569 LKMAPTAEEELKLRLFNGELS--QLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSA 626
           LKMAPT EEE+KLR F  E S  +LGPAE+FLKA++DIPF+FKR++A+L++   + EV+ 
Sbjct: 617 LKMAPTKEEEIKLREFKEETSPIKLGPAEKFLKAVLDIPFAFKRVDAMLYIANFESEVNY 676

Query: 627 TKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 686
            K+SFE LE AC ELRNSRLFLKLLEAVLKTGNRMN GT RG A AFKLDTLLKL DVKG
Sbjct: 677 LKKSFETLETACDELRNSRLFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 736

Query: 687 VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGL 746
            DGKTTLLHFVVQEIIR+EG   +  +  ++S    + + L +E           + LGL
Sbjct: 737 TDGKTTLLHFVVQEIIRTEG---SHLSASNQSTPRTQANPLRDEL--------ECKKLGL 785

Query: 747 QAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDF--LNTDMKNLGENSGFHET 804
           Q V+ L +EL NVKKAAA+D+D L+  VSKL   + K  +   LN ++K+  +   FH++
Sbjct: 786 QVVAGLGNELSNVKKAAAMDSDVLSSYVSKLAGGIEKITEVLRLNEEVKSREDAWRFHDS 845

Query: 805 LKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIVRDFFIMLDK 862
           ++ F++ A+ DI+ +  +E   +SLVK   +YFHG++ K+E    R+F +VRDF  +LD+
Sbjct: 846 MQKFLKRADDDIIRVQAQESVALSLVKEITEYFHGDSAKEEAHPFRIFMVVRDFLSVLDQ 905

Query: 863 ACKQV 867
            CK+V
Sbjct: 906 VCKEV 910

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJX6|FH6_ARATH Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/452 (48%), Positives = 293/452 (64%), Gaps = 33/452 (7%)

Query: 435 KVPRPPLGQKHSSSSVGAGA-----EGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSG 489
           K P P        +SV AG+     +GD +  K KLKP  WDKV A+ D + VW Q+KS 
Sbjct: 427 KTPSPKTKAVEEVNSVSAGSLEKSGDGDTDPSKPKLKPLHWDKVRASSDRATVWDQLKSS 486

Query: 490 SFQFNEEMIETLFGYSEKSKNEKK--KGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTL 547
           SFQ NE+ +E LFG +  S   K+  + S +       +++D KK+QN++I+LRALNVT 
Sbjct: 487 SFQLNEDRMEHLFGCNSGSSAPKEPVRRSVIPLAENENRVLDPKKSQNIAILLRALNVTR 546

Query: 548 EEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIP 605
           EEV +AL +GN   L AEL++TL+KMAPT EEE+KLR ++G++S+LG AERFLK ++DIP
Sbjct: 547 EEVSEALTDGNPESLGAELLETLVKMAPTKEEEIKLREYSGDVSKLGTAERFLKTILDIP 606

Query: 606 FSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGT 665
           F+FKR+EA+L+      EV   + SF+ LE A  EL+ SRLFLKLLEAVL TGNRMN GT
Sbjct: 607 FAFKRVEAMLYRANFDAEVKYLRNSFQTLEEASLELKASRLFLKLLEAVLMTGNRMNVGT 666

Query: 666 FRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTD 725
            RG A AFKLDTLLKL D+KGVDGKTTLLHFVVQEI RSEG             ++ K +
Sbjct: 667 NRGDAIAFKLDTLLKLVDIKGVDGKTTLLHFVVQEITRSEGT------------TTTKDE 714

Query: 726 DLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTR 785
            +L      +  ++ +R  GLQ V+ LS +L NVKK+A +D D L+  V+KL   L K R
Sbjct: 715 TIL------HGNNDGFRKQGLQVVAGLSRDLVNVKKSAGMDFDVLSSYVTKLEMGLDKLR 768

Query: 786 DFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDE 845
            FL T+         F +++K+F++ AE +I  +   E++ +S+VK   +YFHGNA ++E
Sbjct: 769 SFLKTETT----QGRFFDSMKTFLKEAEEEIRKIKGGERKALSMVKEVTEYFHGNAAREE 824

Query: 846 G--LRLFTIVRDFFIMLDKACKQVKDAPKKST 875
              LR+F +VRDF  +LD  CK+VK   + ST
Sbjct: 825 AHPLRIFMVVRDFLGVLDNVCKEVKTMQEMST 856

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1

 Score =  387 bits (995), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/455 (46%), Positives = 286/455 (62%), Gaps = 32/455 (7%)

Query: 420 GGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDN 479
            G    PPPP+ S     R PLG+                AP  KLKP  WDKV A PD 
Sbjct: 441 AGINKTPPPPL-SLDFSERRPLGKD--------------GAPLPKLKPLHWDKVRATPDR 485

Query: 480 SMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIM 539
           +MVW ++++ SF+ +EEMIE+LFGY+ +S  + ++G S    P    +++ K+ QN +I+
Sbjct: 486 TMVWDKLRTSSFELDEEMIESLFGYTMQSSTKNEEGKSKTPSPGK-HLLEPKRLQNFTIL 544

Query: 540 LRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLK 599
           L+ALN T +++C AL +G  L  + ++ L+KM PT EEELKLR + G + +LG AE+FL+
Sbjct: 545 LKALNATADQICSALGKGEGLCLQQLEALVKMVPTKEEELKLRSYKGAVDELGSAEKFLR 604

Query: 600 ALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGN 659
           ALV +PF+F+R EA+L+  T ++EV   + SF +LE ACKEL++SRLFLKLLEAVLKTGN
Sbjct: 605 ALVGVPFAFQRAEAMLYRETFEDEVVHLRNSFSMLEEACKELKSSRLFLKLLEAVLKTGN 664

Query: 660 RMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSF 719
           RMN GT RGGA+AFKLD LLKLSDVKG DGKTTLLHFVVQEI RSEG+R           
Sbjct: 665 RMNVGTIRGGAKAFKLDALLKLSDVKGTDGKTTLLHFVVQEISRSEGIRV---------- 714

Query: 720 SSVKTDDLLEETSKSNET----DEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVS 775
           S      ++ + S  N T    +E YR +GL  VS L++EL NVKK A ID + L  +VS
Sbjct: 715 SDSIMGRIMNQRSNKNRTPEEKEEDYRRMGLDLVSGLNTELRNVKKTATIDLEGLVTSVS 774

Query: 776 KLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGD 835
            L   L +     +  +K   EN  F  ++ SF++  E  +  L E+EKRIM  V    +
Sbjct: 775 NLRDGLGQLSCLASEKLKGDEENRAFVSSMSSFLRYGEKSLEELREDEKRIMERVGEIAE 834

Query: 836 YFHGNAGKDEG--LRLFTIVRDFFIMLDKACKQVK 868
           YFHG+   DE   LR+F IVRDF  MLD  C++++
Sbjct: 835 YFHGDVRGDEKNPLRIFVIVRDFLGMLDHVCRELR 869

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H8K7|FH4_ORYSJ Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1

 Score =  384 bits (986), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/434 (49%), Positives = 283/434 (65%), Gaps = 38/434 (8%)

Query: 446 SSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLF--- 502
           ++ SV    E   + P+ KLKP  WDKV  + D  MVW ++K      +E+MIE LF   
Sbjct: 397 ATMSVRTRGEAAGDEPRPKLKPLHWDKVRTSSDRDMVWDRLK-----LDEDMIEVLFMNN 451

Query: 503 --GYSEKSKNEKKKGSSLDTGPQYIQ---IIDQKKAQNLSIMLRALNVTLEEVCDALLEG 557
               + +  N KK G      PQ+ Q   ++D KKAQN++I+LRALNVTLEEV DALL+G
Sbjct: 452 STAVAPRMDNPKKVGM-----PQFKQEERVLDPKKAQNIAILLRALNVTLEEVTDALLDG 506

Query: 558 NE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALL 615
           N   L AEL++TL+KMAPT EEELKLR F G+LS+LG AERFLKA++DIPF+FKR++ +L
Sbjct: 507 NAECLGAELLETLVKMAPTKEEELKLRDFTGDLSKLGSAERFLKAVLDIPFAFKRVDVML 566

Query: 616 FMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKL 675
           +    + EV+  ++SF+ LE AC +L+ SRLFLKLLEAVL+TGNRMN GT RG A+AFKL
Sbjct: 567 YRANFENEVNYLRKSFQTLEAACDDLKGSRLFLKLLEAVLRTGNRMNVGTNRGEAKAFKL 626

Query: 676 DTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSN 735
           DTLLKL+DVKG DGKTTLLHFVVQEI+RSE  + + +A E+   +  K            
Sbjct: 627 DTLLKLADVKGADGKTTLLHFVVQEIVRSEDAK-SEKAPENHITNIAKV----------- 674

Query: 736 ETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNL 795
              E  R  GL+ VS LS+EL NVK+AA +D D L G VSKL   L K +  L  + K  
Sbjct: 675 ---EQLRRQGLKVVSGLSTELGNVKRAATMDFDVLHGYVSKLEAGLGKIKSVLQLE-KQC 730

Query: 796 GENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIV 853
            +   F  T++ F++ AE +I  +  +EK  +  VK   +YFHGNA K+E   LR+F +V
Sbjct: 731 SQGVNFFATMREFLKEAEQEIEQVRHDEKAALGRVKEITEYFHGNAVKEEAHPLRIFMVV 790

Query: 854 RDFFIMLDKACKQV 867
           RDF  MLD  C++V
Sbjct: 791 RDFLSMLDHVCREV 804

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22824|FH2_ARATH Formin-like protein 2 OS=Arabidopsis thaliana GN=FH2 PE=3 SV=1

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/439 (46%), Positives = 280/439 (63%), Gaps = 17/439 (3%)

Query: 435 KVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFN 494
           +V   P    HS     +  E      K KLK   WDKV A+    MVW QIKS SFQ N
Sbjct: 418 QVSEVPATMSHSLPGDDSDPEKKVETMKPKLKTLHWDKVRASSSRVMVWDQIKSNSFQVN 477

Query: 495 EEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDAL 554
           EEMIETLF  ++ +   + +   + +  Q  + +D +K+ N++I+LRALNVT +EVC+AL
Sbjct: 478 EEMIETLFKVNDPTS--RTRDGVVQSVSQENRFLDPRKSHNIAILLRALNVTADEVCEAL 535

Query: 555 LEGNE--LPAELIQTLLKMAPTAEEELKLRLF----NGELSQLGPAERFLKALVDIPFSF 608
           +EGN   L  EL++ LLKMAPT EEE KL+      +G  S++GPAE+FLKAL++IPF+F
Sbjct: 536 IEGNSDTLGPELLECLLKMAPTKEEEDKLKELKDDDDGSPSKIGPAEKFLKALLNIPFAF 595

Query: 609 KRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRG 668
           KR++A+L++   + E+     SF+ LE A  EL+N+R+FLKLLEAVLKTGNRMN GT RG
Sbjct: 596 KRIDAMLYIVKFESEIEYLNRSFDTLEAATGELKNTRMFLKLLEAVLKTGNRMNIGTNRG 655

Query: 669 GAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLL 728
            A AFKLDTLLKL D+KG DGKTTLLHFVVQEII+ EG R      +S        D++ 
Sbjct: 656 DAHAFKLDTLLKLVDIKGADGKTTLLHFVVQEIIKFEGARVPFTPSQSHI-----GDNMA 710

Query: 729 EETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFL 788
           E+++  +  D   + LGLQ VS LSS+L NVKKAAA+D++SL    +++   + K ++ +
Sbjct: 711 EQSAFQD--DLELKKLGLQVVSGLSSQLINVKKAAAMDSNSLINETAEIARGIAKVKEVI 768

Query: 789 NTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLR 848
            T++K       F E++ SF+   E +I  L      +M +VK   +YFHGN+ +    R
Sbjct: 769 -TELKQETGVERFLESMNSFLNKGEKEITELQSHGDNVMKMVKEVTEYFHGNS-ETHPFR 826

Query: 849 LFTIVRDFFIMLDKACKQV 867
           +F +VRDF  +LD+ CK+V
Sbjct: 827 IFAVVRDFLTILDQVCKEV 845

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE97|FH1_ARATH Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1

 Score =  351 bits (901), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 199/434 (45%), Positives = 270/434 (62%), Gaps = 45/434 (10%)

Query: 452 AGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNE 511
             +E     PK KLK   WDKV A+ D  MVW  ++S SF+ +EEMIETLF    KS N 
Sbjct: 585 CASEAAEETPKPKLKALHWDKVRASSDREMVWDHLRSSSFKLDEEMIETLF--VAKSLNN 642

Query: 512 KKKGSSLDTGPQYI--------QIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELP 561
           K   S   T P+ +        +++D KKAQN++I+LRALNVT+EEVC+ALLEGN   L 
Sbjct: 643 KPNQS--QTTPRCVLPSPNQENRVLDPKKAQNIAILLRALNVTIEEVCEALLEGNADTLG 700

Query: 562 AELIQTLLKMAPTAEEELKLRLFNGEL-SQLGPAERFLKALVDIPFSFKRLEALLFMCTL 620
            EL+++LLKMAPT EEE KL+ +N +   +LG AE+FLKA++DIPF+FKR++A+L++   
Sbjct: 701 TELLESLLKMAPTKEEERKLKAYNDDSPVKLGHAEKFLKAMLDIPFAFKRVDAMLYVANF 760

Query: 621 QEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLK 680
           + EV   K+SFE LE AC+ELRNSR+FLKLLEAVLKTGNRMN GT RG A AFKLDTLLK
Sbjct: 761 ESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLK 820

Query: 681 LSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVK-----TDDLLEETSKSN 735
           L DVKG DGKTTLLHFVVQEIIR+EG R +    ++      K        L  E S   
Sbjct: 821 LVDVKGADGKTTLLHFVVQEIIRAEGTRLSGNNTQTDDIKCRKLGLQVVSSLCSELSNVK 880

Query: 736 ETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNL 795
           +       +    VS LS  +  + +A  + +     T+++  ++               
Sbjct: 881 KAAAMDSEVLSSYVSKLSQGIAKINEAIQVQS-----TITEESNS--------------- 920

Query: 796 GENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIV 853
                F E++K+F++ AE +I+ +  +E   +SLVK   +YFHGN+ K+E    R+F +V
Sbjct: 921 ---QRFSESMKTFLKRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVV 977

Query: 854 RDFFIMLDKACKQV 867
           RDF  ++D+ CK+V
Sbjct: 978 RDFLGVVDRVCKEV 991

Might be involved in the organization and polarity of the actin cytoskeleton. Involved in polar pollen cell growth process by maintaining tip-focused cell membrane expansion for the polar extension of pollen tubes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	921
255563641	965	actin binding protein, putative [Ricinus	0.972	0.928	0.588	0.0
224126279	923	predicted protein [Populus trichocarpa]	0.940	0.938	0.613	0.0
297796339	902	hypothetical protein ARALYDRAFT_495546 [	0.945	0.965	0.540	0.0
46405141	900	formin homology 2 domain-containing prot	0.943	0.965	0.540	0.0
14596027	900	Unknown protein [Arabidopsis thaliana] g	0.943	0.965	0.539	0.0
15239699	900	formin-like protein 5 [Arabidopsis thali	0.943	0.965	0.539	0.0
302143198	499	unnamed protein product [Vitis vinifera]	0.536	0.989	0.722	0.0
225461154	1004	PREDICTED: formin-like protein 5-like [V	0.510	0.468	0.743	0.0
357474843	1034	Formin-like protein [Medicago truncatula	0.523	0.466	0.692	0.0
147807336	910	hypothetical protein VITISV_009172 [Viti	0.524	0.530	0.707	0.0

>gi|255563641|ref|XP_002522822.1| actin binding protein, putative [Ricinus communis] gi|223537906|gb|EEF39520.1| actin binding protein, putative [Ricinus communis]

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/987 (58%), Positives = 686/987 (69%), Gaps = 91/987 (9%)

Query: 1   MIIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLL 60
           M+IQ +M  M+ + FMFL++LL  SLV   +YR+  E+ FL ++VDPVTGEVD+++ +LL
Sbjct: 4   MLIQLQMIRMQSNYFMFLLILLCASLVGGLDYRKRTEQVFLSQLVDPVTGEVDESMGELL 63

Query: 61  WFSCGIDLIRLKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTL 120
              C ++L+ LKE  ED NLC P+ET G   ESNS  +SL K ++ KL  A HP LK+TL
Sbjct: 64  SICCKLELLNLKEADEDFNLCFPKETCGMASESNSEGKSLEKEHIWKLITAQHPQLKRTL 123

Query: 121 LHCIRENNLLHHVSRGGGS------WYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPA 174
           L+C+R+NN+L H SR G S      +Y SL+P+   P++N    L +S+AE      TP+
Sbjct: 124 LNCMRKNNILFHASRQGRSNSQHIRYYNSLFPRAAIPKRN----LLQSIAE------TPS 173

Query: 175 PAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPT----VGDNSTTNSG 230
            A                +  +  + P   +P  PFFP +  ++P       +NS+    
Sbjct: 174 LASGSPFPSPAPSPDLAPSPESIPSSPPAPSPEEPFFPRIGDNTPPAPTPTSENSSAGPN 233

Query: 231 SGTSARADDKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSL 290
           S  + + D   + H  +IIAVVVTA VTF  AAL FLCC++ CR  SG RQNDERPLLSL
Sbjct: 234 SDPTVKPDSGDSKHKEIIIAVVVTAVVTFAFAALFFLCCTKICRRSSGRRQNDERPLLSL 293

Query: 291 SLSDYSVGS--------GNSKEEKLDIGKF-------------------------DGTAS 317
           SL+DYS GS         + KEEK     F                         D TAS
Sbjct: 294 SLTDYSTGSSYKPFGVVASIKEEKAGQQSFNNNLSHDRKHSSLDSINSDALHVSVDETAS 353

Query: 318 FGAVGGT---AKSF----NENGQV---------LPPLKPPPGRVGSTLQGMPPLKP-PPG 360
            G VG +   A+S     N  G V         +PPLKPPPGR         PL P PP 
Sbjct: 354 LGVVGASNFSAESVDSTSNNTGLVPPPPGRVDSMPPLKPPPGRA-------VPLPPEPPA 406

Query: 361 RAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 420
              P P +   +  P PP  PPPP     +    P   P P    P P+PGPPPPPP +G
Sbjct: 407 SLRPPPRKVGPAPPPTPPRAPPPPAKASSSMGSRPPGPPPPPPMAPNPRPGPPPPPPSKG 466

Query: 421 GPAPRPPPPMPS-GSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDN 479
             AP  PPP  S G+KVPRPP G K     + +G +GDAN PK KLKPFFWDKV+ANP++
Sbjct: 467 SHAPPRPPPPLSVGAKVPRPPTGSK-----LPSGGDGDANTPKAKLKPFFWDKVMANPEH 521

Query: 480 SMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNE-KKKGSSLDTGPQYIQIIDQKKAQNL 536
           SMVWHQIKSGSFQFNEEMIETLFGY+  +++KNE KK+ SS +   QYIQI+D KKAQNL
Sbjct: 522 SMVWHQIKSGSFQFNEEMIETLFGYAAVDRNKNEGKKESSSQEPSTQYIQILDTKKAQNL 581

Query: 537 SIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAER 596
           SI+LRALNVT+EEVCDAL EGNELP EL+QTLLKMAPTA+EELKLR+F+GELSQLGPAER
Sbjct: 582 SILLRALNVTIEEVCDALREGNELPVELLQTLLKMAPTADEELKLRVFSGELSQLGPAER 641

Query: 597 FLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLK 656
           FLKALV+IPF++KRLEALLFMCTLQEEV+ TKESFE LEVACKELR+SRLFLKLLEAVLK
Sbjct: 642 FLKALVEIPFAYKRLEALLFMCTLQEEVTTTKESFETLEVACKELRSSRLFLKLLEAVLK 701

Query: 657 TGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARES 716
           TGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLLHFVVQEIIRSEGVRAAR A+ES
Sbjct: 702 TGNRMNDGTFRGGAQAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRSEGVRAARAAKES 761

Query: 717 RSFS--SVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTV 774
           R+FS  SV T+DLLE+ S   +T+E YR+LGLQ VS LSSELENVKKAA +DADSL GTV
Sbjct: 762 RTFSNVSVTTEDLLEDISP--DTEEDYRSLGLQVVSRLSSELENVKKAANVDADSLIGTV 819

Query: 775 SKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTG 834
           +KLGH+LLKT+DFLN DMK+L   S FHETLKSFVQNAE D+M LLEEEKRIM+L+KSTG
Sbjct: 820 AKLGHSLLKTKDFLNKDMKSLEGGSEFHETLKSFVQNAEVDVMLLLEEEKRIMALMKSTG 879

Query: 835 DYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQ 894
           DYFHG AGKDEGLRLF IVRDF I+LDK CKQV +A KKS KSLKKE STASS S   Q 
Sbjct: 880 DYFHGKAGKDEGLRLFVIVRDFLIILDKVCKQVGEAQKKSAKSLKKESSTASSHSSPRQH 939

Query: 895 PSPDLRHRLFPAITERRVEDFSSDEES 921
            SPD R RLFPAI ERR E+ SSD+ES
Sbjct: 940 LSPDFRSRLFPAIAERR-ENSSSDDES 965

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126279|ref|XP_002319800.1| predicted protein [Populus trichocarpa] gi|222858176|gb|EEE95723.1| predicted protein [Populus trichocarpa]

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/955 (61%), Positives = 671/955 (70%), Gaps = 89/955 (9%)

Query: 17  FLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLWFSCGIDLIRLKEVVE 76
           FLV+LL  S+VVS EYR   EE FL ++ DP TG VD + A+LL   C +DLI+LKE  E
Sbjct: 1   FLVILLCASVVVSLEYRGRTEEVFLRQLDDPATGYVDKDAAELLCIICKVDLIQLKEADE 60

Query: 77  DLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTLLHCIRENNLLHHVS-- 134
           +LN C PEET  G              N+ KL     P LK+TLL CIR++N L HVS  
Sbjct: 61  NLNFCFPEETFNGA------------KNIQKLIKVPQPQLKETLLDCIRKDNHLFHVSGD 108

Query: 135 RGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATS 194
            GG   Y +           +  +  R+L +I   +  PAP P V         +     
Sbjct: 109 EGGADNYHT-----------RRAVARRNLLQII--SEPPAPVPVVGSPFPSPSPSPDLAP 155

Query: 195 PTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDKTNHHNTVIIAVVVT 254
                     +P  PFFP ++   P+  +NS+++  SG      D  N+H TV+IAVVVT
Sbjct: 156 SPASTPNSIPSPQEPFFPHLTPPPPSPSENSSSSQTSGPIE--PDNGNNHKTVVIAVVVT 213

Query: 255 AAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGS-------GNSKE-EK 306
           A VTFV AAL FL C++ C  G G R+NDERPLLSLSLSDYSVGS       GNS E EK
Sbjct: 214 AGVTFVVAALFFLLCTKVCWRGPGARRNDERPLLSLSLSDYSVGSTHKTFGLGNSIEQEK 273

Query: 307 LDIGKF---------------------------DGTASFGAVGGTAKSFNENGQVLPPLK 339
           L    F                           D + S GAV   AKS + + ++  P+ 
Sbjct: 274 LGHHSFGNISSHEKMGSSLESRFNKSDALNVSLDESMSLGAVSAAAKS-SGDSKMNTPVP 332

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
            PPGR GS     P LKPPPGRAEPLP EPPASLRP PPS   P PPPPP   P PA + 
Sbjct: 333 HPPGRTGSN----PFLKPPPGRAEPLPPEPPASLRP-PPSKAGPTPPPPPPAPPAPAKSS 387

Query: 400 APRAPPPPP-----------KPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH--- 445
           +   P PP            KPGP   PPP GG APRPPPPMPSG KVPRPPLG KH   
Sbjct: 388 SSTGPRPPGPPPPPPIAPGVKPGPRTLPPPIGGSAPRPPPPMPSGPKVPRPPLGSKHPSN 447

Query: 446 SSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS 505
           ++SS GAG E DA+APK KLKPFFWDKVLANPD+SMVWHQIKSGSFQFNEEMIETLFGY+
Sbjct: 448 TASSEGAGMEDDADAPKAKLKPFFWDKVLANPDHSMVWHQIKSGSFQFNEEMIETLFGYA 507

Query: 506 -EKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAEL 564
            +K+KNE+KK SS D  P +IQI+D KKAQNLSI+LRALNVT+EEVCDAL EGNELP EL
Sbjct: 508 PDKNKNERKKESSQDPTPHFIQILDPKKAQNLSILLRALNVTIEEVCDALREGNELPVEL 567

Query: 565 IQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEV 624
           +Q LL+MAPTA+EELKLRL++GELSQLGPAERFLKALVDIPF+FKRLEALL MCTLQEE+
Sbjct: 568 VQNLLRMAPTADEELKLRLYSGELSQLGPAERFLKALVDIPFAFKRLEALLLMCTLQEEI 627

Query: 625 SATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDV 684
           +++KESFE LEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDV
Sbjct: 628 TSSKESFETLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDV 687

Query: 685 KGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSV--KTDDLLEETSKSNETDEHYR 742
           KGVDGKTTLLHFVVQEI+RSEGVRAAR  RESRS SSV  KTDDLLEE   S +T+EHY 
Sbjct: 688 KGVDGKTTLLHFVVQEIVRSEGVRAARAGRESRSLSSVSIKTDDLLEEI--STDTEEHYC 745

Query: 743 NLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFH 802
           NLGLQ VSHLSSELENVK+AA +D D+LT + +KLG +LL T++FLN DMKNL E+SGFH
Sbjct: 746 NLGLQVVSHLSSELENVKRAAVVDTDNLTRSAAKLGQSLLVTQNFLNKDMKNLEEDSGFH 805

Query: 803 ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDK 862
           +TLK FVQNAE D+M LLEEEKRIM+LVKSTGDYFHGNAGKDEGLRLF IVRDF I+LDK
Sbjct: 806 QTLKGFVQNAEVDVMSLLEEEKRIMALVKSTGDYFHGNAGKDEGLRLFVIVRDFLIILDK 865

Query: 863 ACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSS 917
            CK+V++A K+  K+ KKE ST SS S+  QQ   DLR RLFPAI ERR ED SS
Sbjct: 866 VCKEVREAQKRLAKTQKKEASTVSSPSNQRQQLLADLRQRLFPAIAERRPEDSSS 920

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796339|ref|XP_002866054.1| hypothetical protein ARALYDRAFT_495546 [Arabidopsis lyrata subsp. lyrata] gi|297311889|gb|EFH42313.1| hypothetical protein ARALYDRAFT_495546 [Arabidopsis lyrata subsp. lyrata]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/947 (54%), Positives = 617/947 (65%), Gaps = 76/947 (8%)

Query: 2   IIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLW 61
           +IQ  MG    +  +F ++LL G LV++ E    ++E FL + + P TG+V++ + +  W
Sbjct: 4   MIQGGMGDQNWTRLVFWLILLSGFLVITLEENSDKDEIFLSQFMAPSTGQVNEQMEETSW 63

Query: 62  FS-CGIDLIRLKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTL 120
              C  D   +KE V   NLC P     G+ +S             +L+   H HLKQ L
Sbjct: 64  AQRCWQDSDCVKEAVAAFNLCFP-----GSKDSR------------ELFGLNHSHLKQAL 106

Query: 121 LHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVA 180
           L CI+E   L+  +    ++ E L    D PR+N               A+ P  +P+ +
Sbjct: 107 LDCIQEKGKLNAHN---PNYLELLSSMLDIPRRNL--------------ATRPGSSPSPS 149

Query: 181 PAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDK 240
           P P      +P T         P    + F PS S   P    N + NS S   + A  K
Sbjct: 150 PLPSRPPKHSPGTRRPPTRSRSPPPRKSSFPPSRSPPPPPAKKNVSKNSTSAPVSPAKRK 209

Query: 241 TNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLSDYSVG-- 298
            +H  T+IIAVVVTA  TF+ AAL FLCC+R C  GSGGR+NDERPLLSLS SDYSVG  
Sbjct: 210 EDHEKTIIIAVVVTAVSTFLFAALFFLCCTRVCGNGSGGRKNDERPLLSLSSSDYSVGSS 269

Query: 299 ---SGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPG------------ 343
               G+ K +KL    F+  ++ G +     S ++N   L       G            
Sbjct: 270 INYGGSVKGDKLGHQSFNIYSNQGKMSSFDGSNSDNSDSLEERLSHEGMRNNSITNHGLP 329

Query: 344 -------RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
                  R  S L G    K   G+ EPLP EPP  L+     G  PPPP P  P P  A
Sbjct: 330 PLKPPPGRTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKGSAPPPPVPAPPMPSSA 385

Query: 397 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 456
             P P  P PPP  G P PPPP G   PRPPPPM  G K PRP         S G     
Sbjct: 386 GPPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRP---------SSGPATAS 436

Query: 457 DANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKK 514
           D +APKTKLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK 
Sbjct: 437 DDDAPKTKLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKG 496

Query: 515 GSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPT 574
            S     PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT
Sbjct: 497 SSGQAALPQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPT 556

Query: 575 AEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEIL 634
            EEELKLRL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ L
Sbjct: 557 PEEELKLRLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQTL 616

Query: 635 EVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLL 694
           EVACKELR SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLL
Sbjct: 617 EVACKELRGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLL 676

Query: 695 HFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSS 754
           HFVVQEIIR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGLQ VS LSS
Sbjct: 677 HFVVQEIIRTEGVRAARTIRESQSFSSVKTEDLLAEETSEETE-ENYRNLGLQKVSGLSS 735

Query: 755 ELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEG 814
           ELE+VKK+A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG
Sbjct: 736 ELEHVKKSANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEESGFREALEDFIQNAEG 795

Query: 815 DIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 874
            IM +L EEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  + 
Sbjct: 796 SIMSILGEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRP 855

Query: 875 TKSLKKEGSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 920
            +  +K+GSTASSSS+TP+Q PS D R +LFPAITERR++  SSD +
Sbjct: 856 VRMARKQGSTASSSSETPRQTPSLDPRQKLFPAITERRMDQSSSDSD 902

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46405141|gb|AAS93430.1| formin homology 2 domain-containing protein 5 [Arabidopsis thaliana] gi|47716755|gb|AAT37554.1| formin homology 2 domain-containing protein 5 [Arabidopsis thaliana]

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/947 (54%), Positives = 618/947 (65%), Gaps = 78/947 (8%)

Query: 2   IIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLW 61
           +I+  MG    S  +F ++L  G LV++ E    ++E FL + + P TG+V++++ +  W
Sbjct: 4   MIRGGMGDQNWSRLVFWLILFSGLLVITLEENPEKDEIFLSQFMAPSTGQVNEHMEETSW 63

Query: 62  -FSCGIDLIRLKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTL 120
              C  D   +KE V + NLC P     G+ +S             +L+   H +LKQTL
Sbjct: 64  ALRCWQDSDCVKEAVAEFNLCFP-----GSKDSR------------ELFGLNHTNLKQTL 106

Query: 121 LHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVA 180
           L CI+E   L+                       ++L L  S+ +IP R     P  + +
Sbjct: 107 LDCIQEKGKLN-------------------GHNPKYLELLSSMLDIPRRNLATKPGSSPS 147

Query: 181 PAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDK 240
           P+P      +            P      F PS S   P    N++ NS S   + A  K
Sbjct: 148 PSPSRPPKRSRGPPRPPTRPKSPPPRKASFPPSRSPPPPPAKKNASKNSTSAPVSPAKKK 207

Query: 241 TNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLS------- 293
            +H  T+IIAVVVTA  TF+ AAL FLCCSR C  GSGGR+NDERPLLSLS S       
Sbjct: 208 EDHEKTIIIAVVVTAVSTFLLAALFFLCCSRVCGNGSGGRKNDERPLLSLSSSDYSVGSS 267

Query: 294 -DY--SVGSGNSKEEKLDIGKFDG-TASF-GAVGGTAKSFNE------------NGQVLP 336
            +Y  SV       +  +I    G  +SF G+   T+ S  E                LP
Sbjct: 268 INYGGSVKGDKQGHQSFNIYSNQGKMSSFDGSNSDTSDSLEERLSHEGLRNNSITNHGLP 327

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           PLKPPPGR  S L G    K   G+ EPLP EPP  L+        PPPP P  P P  A
Sbjct: 328 PLKPPPGRTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKASAPPPPVPAPPMPSSA 383

Query: 397 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 456
             P P  P PPP  G P PPPP G   PRPPPPM  G K PRPP G   +          
Sbjct: 384 GPPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPPSGPADAL--------- 434

Query: 457 DANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKK 514
           D +APKTKLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK 
Sbjct: 435 DDDAPKTKLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKG 494

Query: 515 GSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPT 574
            S     PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT
Sbjct: 495 SSGQAALPQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPT 554

Query: 575 AEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEIL 634
            EEELKLRL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ L
Sbjct: 555 PEEELKLRLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQTL 614

Query: 635 EVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLL 694
           EVACKELR SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLL
Sbjct: 615 EVACKELRGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLL 674

Query: 695 HFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSS 754
           HFVVQEIIR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGL+ VS LSS
Sbjct: 675 HFVVQEIIRTEGVRAARTIRESQSFSSVKTEDLLVEETSEESE-ENYRNLGLEKVSGLSS 733

Query: 755 ELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEG 814
           ELE+VKK+A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG
Sbjct: 734 ELEHVKKSANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEESGFREALEDFIQNAEG 793

Query: 815 DIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 874
            IM +LEEEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  + 
Sbjct: 794 SIMSILEEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRP 853

Query: 875 TKSLKKEGSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 920
            +  +K+GSTAS+SS+TP+Q PS D R +LFPAITERRV+  SSD +
Sbjct: 854 VRMARKQGSTASASSETPRQTPSLDPRQKLFPAITERRVDQSSSDSD 900

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14596027|gb|AAK68741.1| Unknown protein [Arabidopsis thaliana] gi|22136490|gb|AAM91323.1| unknown protein [Arabidopsis thaliana]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/947 (53%), Positives = 618/947 (65%), Gaps = 78/947 (8%)

Query: 2   IIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLW 61
           +I+  MG    S  +F ++L  G LV++ E    ++E FL + + P TG+V++++ +  W
Sbjct: 4   MIRGGMGDQNWSRLVFWLILFSGLLVITLEENPEKDEIFLSQFMAPSTGQVNEHMEETSW 63

Query: 62  FS-CGIDLIRLKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTL 120
              C  D   +KE V + NLC P     G+ +S             +L+   H +LKQTL
Sbjct: 64  AQRCWQDSDCVKEAVAEFNLCFP-----GSKDSR------------ELFGLNHTNLKQTL 106

Query: 121 LHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVA 180
           L CI+E   L+                       ++L L  S+ +IP R     P  + +
Sbjct: 107 LDCIQEKGKLN-------------------GHNPKYLELLSSMLDIPRRNLATKPGSSPS 147

Query: 181 PAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDK 240
           P+P      +            P    + F PS S   P    N++ NS S   + A  K
Sbjct: 148 PSPSRPPKRSRGPPRPPTRPKSPPPRKSSFPPSRSPPPPPAKKNASKNSTSAPVSPAKKK 207

Query: 241 TNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLS------- 293
            +H  T+IIAVVVTA  TF+ AAL FLCCSR C  GSGGR+NDERPLLSLS S       
Sbjct: 208 EDHEKTIIIAVVVTAVSTFLLAALFFLCCSRVCGNGSGGRKNDERPLLSLSSSDYSVGSS 267

Query: 294 -DY--SVGSGNSKEEKLDIGKFDG-TASF-GAVGGTAKSFNE------------NGQVLP 336
            +Y  SV       +  +I    G  +SF G+   T+ S  E                LP
Sbjct: 268 INYGGSVKGDKQGHQSFNIYSNQGKMSSFDGSNSDTSDSLEERLSHEGLRNNSITNHGLP 327

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           PLKPPPGR  S L G    K   G+ EPLP EPP  L+        PPPP P    P  A
Sbjct: 328 PLKPPPGRTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKASAPPPPVPAPQMPSSA 383

Query: 397 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 456
             P P  P PPP  G P PPPP G   PRPPPPM  G K PRPP G   +          
Sbjct: 384 GPPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPPSGPADAL--------- 434

Query: 457 DANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKK 514
           D +APKTKLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK 
Sbjct: 435 DDDAPKTKLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKG 494

Query: 515 GSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPT 574
            S     PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT
Sbjct: 495 SSGQAALPQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPT 554

Query: 575 AEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEIL 634
            EEELKLRL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ L
Sbjct: 555 PEEELKLRLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQKL 614

Query: 635 EVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLL 694
           EVACKELR SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLL
Sbjct: 615 EVACKELRGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLL 674

Query: 695 HFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSS 754
           HFVVQEIIR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGL+ VS LSS
Sbjct: 675 HFVVQEIIRTEGVRAARTIRESQSFSSVKTEDLLVEETSEESE-ENYRNLGLEKVSGLSS 733

Query: 755 ELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEG 814
           ELE+VKK+A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG
Sbjct: 734 ELEHVKKSANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEGSGFREALEDFIQNAEG 793

Query: 815 DIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 874
            IM +LEEEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  + 
Sbjct: 794 SIMSILEEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRP 853

Query: 875 TKSLKKEGSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 920
            +  +K+GSTAS+SS+TP+Q PS D R +LFPAITERRV+  SSD +
Sbjct: 854 VRMARKQGSTASASSETPRQTPSLDPRQKLFPAITERRVDQSSSDSD 900

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239699|ref|NP_200276.1| formin-like protein 5 [Arabidopsis thaliana] gi|30696498|ref|NP_851191.1| formin-like protein 5 [Arabidopsis thaliana] gi|160013957|sp|Q94B77.2|FH5_ARATH RecName: Full=Formin-like protein 5; Short=AtFH5; Short=AtFORMIN-5; AltName: Full=Formin homology 2 domain-containing protein 5 gi|9758957|dbj|BAB09344.1| unnamed protein product [Arabidopsis thaliana] gi|332009139|gb|AED96522.1| formin-like protein 5 [Arabidopsis thaliana] gi|332009140|gb|AED96523.1| formin-like protein 5 [Arabidopsis thaliana]

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/947 (53%), Positives = 618/947 (65%), Gaps = 78/947 (8%)

Query: 2   IIQEEMGVMRRSCFMFLVVLLYGSLVVSSEYRRTREEDFLCKVVDPVTGEVDDNLAQLLW 61
           +I+  MG    S  +F ++L  G LV++ E    ++E FL + + P TG+V++++ +  W
Sbjct: 4   MIRGGMGDQNWSRLVFWLILFSGLLVITLEENPEKDEIFLSQFMAPSTGQVNEHMEETSW 63

Query: 62  FS-CGIDLIRLKEVVEDLNLCLPEETPGGTDESNSRSQSLSKPNLVKLYNALHPHLKQTL 120
              C  D   +KE V + NLC P     G+ +S             +L+   H +LKQTL
Sbjct: 64  AQRCWQDSDCVKEAVAEFNLCFP-----GSKDSR------------ELFGLNHTNLKQTL 106

Query: 121 LHCIRENNLLHHVSRGGGSWYESLYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVA 180
           L CI+E   L+                       ++L L  S+ +IP R     P  + +
Sbjct: 107 LDCIQEKGKLN-------------------GHNPKYLELLSSMLDIPRRNLATKPGSSPS 147

Query: 181 PAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDK 240
           P+P      +            P    + F PS S   P    N++ NS S   + A  K
Sbjct: 148 PSPSRPPKRSRGPPRPPTRPKSPPPRKSSFPPSRSPPPPPAKKNASKNSTSAPVSPAKKK 207

Query: 241 TNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLS------- 293
            +H  T+IIAVVVTA  TF+ AAL FLCCSR C  GSGGR+NDERPLLSLS S       
Sbjct: 208 EDHEKTIIIAVVVTAVSTFLLAALFFLCCSRVCGNGSGGRKNDERPLLSLSSSDYSVGSS 267

Query: 294 -DY--SVGSGNSKEEKLDIGKFDG-TASF-GAVGGTAKSFNE------------NGQVLP 336
            +Y  SV       +  +I    G  +SF G+   T+ S  E                LP
Sbjct: 268 INYGGSVKGDKQGHQSFNIYSNQGKMSSFDGSNSDTSDSLEERLSHEGLRNNSITNHGLP 327

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           PLKPPPGR  S L G    K   G+ EPLP EPP  L+        PPPP P    P  A
Sbjct: 328 PLKPPPGRTASVLSG----KSFSGKVEPLPPEPPKFLKVSSKKASAPPPPVPAPQMPSSA 383

Query: 397 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 456
             P P  P PPP  G P PPPP G   PRPPPPM  G K PRPP G   +          
Sbjct: 384 GPPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPRPPSGPADAL--------- 434

Query: 457 DANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--EKSKNEKKK 514
           D +APKTKLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+LFGY+  +K+KN+KK 
Sbjct: 435 DDDAPKTKLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKG 494

Query: 515 GSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPT 574
            S     PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGNELP E IQTLLKMAPT
Sbjct: 495 SSGQAALPQFVQILEPKKGQNLSILLRALNATTEEVCDALREGNELPVEFIQTLLKMAPT 554

Query: 575 AEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEIL 634
            EEELKLRL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMCTL EE++  KESF+ L
Sbjct: 555 PEEELKLRLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMCTLHEEMAFVKESFQKL 614

Query: 635 EVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLL 694
           EVACKELR SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG DGKTTLL
Sbjct: 615 EVACKELRGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGTDGKTTLL 674

Query: 695 HFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSS 754
           HFVVQEIIR+EGVRAAR  RES+SFSSVKT+DLL E +      E+YRNLGL+ VS LSS
Sbjct: 675 HFVVQEIIRTEGVRAARTIRESQSFSSVKTEDLLVEETSEESE-ENYRNLGLEKVSGLSS 733

Query: 755 ELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEG 814
           ELE+VKK+A IDAD LTGTV K+GHAL K RDF+N++MK+ GE SGF E L+ F+QNAEG
Sbjct: 734 ELEHVKKSANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGEESGFREALEDFIQNAEG 793

Query: 815 DIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 874
            IM +LEEEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF I+LDK+CK+V++A  + 
Sbjct: 794 SIMSILEEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIILDKSCKEVREARGRP 853

Query: 875 TKSLKKEGSTASSSSDTPQQ-PSPDLRHRLFPAITERRVEDFSSDEE 920
            +  +K+GSTAS+SS+TP+Q PS D R +LFPAITERRV+  SSD +
Sbjct: 854 VRMARKQGSTASASSETPRQTPSLDPRQKLFPAITERRVDQSSSDSD 900

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143198|emb|CBI20493.3| unnamed protein product [Vitis vinifera]

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/500 (72%), Positives = 419/500 (83%), Gaps = 6/500 (1%)

Query: 424 PRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVW 483
           PRPP P+ +G K  +P     ++ S  G     +A+APKTKLKPFFWDKVLANPD+SMVW
Sbjct: 3   PRPPQPIGTGLKASQPSTSAPNAPSEGGVSG-SEADAPKTKLKPFFWDKVLANPDHSMVW 61

Query: 484 HQIKSGSFQFNEEMIETLFGYS--EKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLR 541
           HQIKSGSFQF+EEMIETLFGY+  EK+K  +K+ S+ D+  QYIQ+ID KK+QNL+I+LR
Sbjct: 62  HQIKSGSFQFSEEMIETLFGYAPPEKNKTVRKESSAQDSSSQYIQLIDSKKSQNLAILLR 121

Query: 542 ALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKAL 601
           ALNVT EE CDA+ EGNELP EL+QTLLKMAPTAEEELKLRLF+G LSQLGPAERFLK L
Sbjct: 122 ALNVTTEEFCDAIQEGNELPVELLQTLLKMAPTAEEELKLRLFSGNLSQLGPAERFLKVL 181

Query: 602 VDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRM 661
           VDIPF+FKRLE+LLFM +LQE++S  KESF  LE ACKEL++SRLFLKLLEAVLKTGNRM
Sbjct: 182 VDIPFAFKRLESLLFMGSLQEDISMLKESFATLEAACKELKSSRLFLKLLEAVLKTGNRM 241

Query: 662 NDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSS 721
           NDGTFRGGAQAFKLDTLLKL+DVKGVDGKTTLLHFVV EIIRSEGVRA R ARESRS SS
Sbjct: 242 NDGTFRGGAQAFKLDTLLKLADVKGVDGKTTLLHFVVLEIIRSEGVRAVRAARESRSLSS 301

Query: 722 VKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHAL 781
           +K+DDLLE+ S+ +E  EHYR+LGLQ VS LS ELENV+KA+ +D D L  TV+K+G+ L
Sbjct: 302 IKSDDLLEDPSQDSE--EHYRSLGLQVVSGLSDELENVRKASVLDTDGLKETVAKVGNEL 359

Query: 782 LKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNA 841
           LKTR+FLN+DM+N+   +GF +TL+SFVQ+AE DI WLLEEEKRI +LVKST DYFHGNA
Sbjct: 360 LKTRNFLNSDMRNIDNKNGFCQTLESFVQHAEVDITWLLEEEKRITALVKSTIDYFHGNA 419

Query: 842 GKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRH 901
           GKDEGLRLF IVRDF IMLDKACKQV+DAPKK  +  KKE  TA  SSDT Q  SPD+R 
Sbjct: 420 GKDEGLRLFVIVRDFLIMLDKACKQVRDAPKKP-RPQKKEVPTAQPSSDTRQPASPDIRQ 478

Query: 902 RLFPAITERRVEDFSSDEES 921
           +LFPAI +RR++  SSDEES
Sbjct: 479 KLFPAIVDRRMDYSSSDEES 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461154|ref|XP_002280117.1| PREDICTED: formin-like protein 5-like [Vitis vinifera]

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/475 (74%), Positives = 407/475 (85%), Gaps = 5/475 (1%)

Query: 449  SVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYS--E 506
            S G  +  +A+APKTKLKPFFWDKVLANPD+SMVWHQIKSGSFQF+EEMIETLFGY+  E
Sbjct: 532  SEGGVSGSEADAPKTKLKPFFWDKVLANPDHSMVWHQIKSGSFQFSEEMIETLFGYAPPE 591

Query: 507  KSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQ 566
            K+K  +K+ S+ D+  QYIQ+ID KK+QNL+I+LRALNVT EE CDA+ EGNELP EL+Q
Sbjct: 592  KNKTVRKESSAQDSSSQYIQLIDSKKSQNLAILLRALNVTTEEFCDAIQEGNELPVELLQ 651

Query: 567  TLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSA 626
            TLLKMAPTAEEELKLRLF+G LSQLGPAERFLK LVDIPF+FKRLE+LLFM +LQE++S 
Sbjct: 652  TLLKMAPTAEEELKLRLFSGNLSQLGPAERFLKVLVDIPFAFKRLESLLFMGSLQEDISM 711

Query: 627  TKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 686
             KESF  LE ACKEL++SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL+DVKG
Sbjct: 712  LKESFATLEAACKELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKG 771

Query: 687  VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGL 746
            VDGKTTLLHFVV EIIRSEGVRA R ARESRS SS+K+DDLLE+ S+ +E  EHYR+LGL
Sbjct: 772  VDGKTTLLHFVVLEIIRSEGVRAVRAARESRSLSSIKSDDLLEDPSQDSE--EHYRSLGL 829

Query: 747  QAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLK 806
            Q VS LS ELENV+KA+ +D D L  TV+K+G+ LLKTR+FLN+DM+N+   +GF +TL+
Sbjct: 830  QVVSGLSDELENVRKASVLDTDGLKETVAKVGNELLKTRNFLNSDMRNIDNKNGFCQTLE 889

Query: 807  SFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ 866
            SFVQ+AE DI WLLEEEKRI +LVKST DYFHGNAGKDEGLRLF IVRDF IMLDKACKQ
Sbjct: 890  SFVQHAEVDITWLLEEEKRITALVKSTIDYFHGNAGKDEGLRLFVIVRDFLIMLDKACKQ 949

Query: 867  VKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSDEES 921
            V+DAPKK  +  KKE  TA  SSDT Q  SPD+R +LFPAI +RR++  SSDEES
Sbjct: 950  VRDAPKK-PRPQKKEVPTAQPSSDTRQPASPDIRQKLFPAIVDRRMDYSSSDEES 1003

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474843|ref|XP_003607707.1| Formin-like protein [Medicago truncatula] gi|358345286|ref|XP_003636712.1| Formin-like protein [Medicago truncatula] gi|355502647|gb|AES83850.1| Formin-like protein [Medicago truncatula] gi|355508762|gb|AES89904.1| Formin-like protein [Medicago truncatula]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/498 (69%), Positives = 411/498 (82%), Gaps = 16/498 (3%)

Query: 432  SGSKVPRPPLGQK----HSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIK 487
            SG   PRPP+G K     ++ +  AGAEG A+  K KLKPFFWDKV AN D SMVW+QIK
Sbjct: 544  SGVAPPRPPIGPKAGGPKATENAEAGAEGGADTSKAKLKPFFWDKVPANSDQSMVWNQIK 603

Query: 488  SGSFQFNEEMIETLFGYSEKSKN----EKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRAL 543
            SGSFQFNEEMIETLFGY+  +KN    +K+  SS D  PQYIQI+D+KKAQNL I+LRAL
Sbjct: 604  SGSFQFNEEMIETLFGYNAVNKNNGQRQKESSSSQDPSPQYIQIVDKKKAQNLLILLRAL 663

Query: 544  NVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVD 603
            NVT+EEVCDAL EGNELP+E +QTLLKMAPT++EELKLRLFNG+LSQLGPA+RFLKA+VD
Sbjct: 664  NVTMEEVCDALYEGNELPSEFLQTLLKMAPTSDEELKLRLFNGDLSQLGPADRFLKAMVD 723

Query: 604  IPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMND 663
            IP +FKR+E LLFMCT +EE++ T ESF +LEVACKELRNSRLF KLLEAVLKTGNRMND
Sbjct: 724  IPSAFKRMEVLLFMCTFKEELTTTMESFAVLEVACKELRNSRLFHKLLEAVLKTGNRMND 783

Query: 664  GTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVK 723
            GT+RGGAQAFKLDTLLKLSDVKG DGKTTLLHFVVQEIIRSEG++AAR A++S+S S++K
Sbjct: 784  GTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKDSQSLSNIK 843

Query: 724  TDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLK 783
            TD+L       +ET++HYR LGL+ VSHLS+ELENVK+ + +DADSLT T  KLGH L+K
Sbjct: 844  TDEL-------HETEDHYRELGLEMVSHLSTELENVKRGSVLDADSLTATTIKLGHGLVK 896

Query: 784  TRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGK 843
             +D LN ++KN+ ++ GF ET++SFV+NAE D+  LLE+EK+IM+LVKSTGDYFHGNA K
Sbjct: 897  AKDILNKNLKNVEDDRGFRETVESFVKNAEADVKKLLEDEKKIMALVKSTGDYFHGNATK 956

Query: 844  DEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRL 903
            D+GLRLF +VRDF IMLDK CK+V+DA KK  K +K+E S   SSSDT   PS D R RL
Sbjct: 957  DDGLRLFVVVRDFLIMLDKVCKEVRDAQKKPAKPIKQETSRGLSSSDTRPSPS-DFRQRL 1015

Query: 904  FPAITERRVEDFSSDEES 921
            FPAI ERR++D SSDEES
Sbjct: 1016 FPAIAERRIDDDSSDEES 1033

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807336|emb|CAN77532.1| hypothetical protein VITISV_009172 [Vitis vinifera]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/492 (70%), Positives = 403/492 (81%), Gaps = 9/492 (1%)

Query: 428 PPMPSGSKVPRPPLG---QKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWH 484
           PP  S +    PPLG   +K+++S  G    G+++APKTKLKPFFWDKVLA+PD SMVWH
Sbjct: 410 PPKSSAANSKLPPLGPHHRKNTASGEGDDVAGESDAPKTKLKPFFWDKVLASPDESMVWH 469

Query: 485 QIKSGSFQFNEEMIETLFGYS--EKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRA 542
           ++ +GSFQFNEEMIE+LFGY+  EK+KN+ KK S+  + PQYIQII+ KKAQNLSI+LRA
Sbjct: 470 ELSAGSFQFNEEMIESLFGYTNVEKNKNDSKKESA-SSEPQYIQIINPKKAQNLSILLRA 528

Query: 543 LNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALV 602
           LNVT EEV DAL EGNELPAEL+QTLLKMAPT +EELKLRLF+G  SQLGPAERFLK LV
Sbjct: 529 LNVTTEEVYDALKEGNELPAELLQTLLKMAPTPDEELKLRLFSGNTSQLGPAERFLKVLV 588

Query: 603 DIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMN 662
           +IPF+FKR+EALLFM +LQEEVS  KESF  LEVACKELRNSRLFLKLLEAVLKTGNRMN
Sbjct: 589 EIPFAFKRMEALLFMSSLQEEVSGIKESFAALEVACKELRNSRLFLKLLEAVLKTGNRMN 648

Query: 663 DGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSV 722
           DGTFRGGAQAFKLDTLLKLSDVKG+DGKTTLLHFVV EIIRSEG+RAAR ARES+SFSS+
Sbjct: 649 DGTFRGGAQAFKLDTLLKLSDVKGIDGKTTLLHFVVLEIIRSEGIRAARAARESKSFSSL 708

Query: 723 KTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALL 782
           K+DDL E+   SNET EH+R LGLQ VS LS+ELENVKKAA IDADSLT TVS LGH+LL
Sbjct: 709 KSDDLTEDP--SNET-EHFRTLGLQVVSGLSNELENVKKAAIIDADSLTSTVSNLGHSLL 765

Query: 783 KTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG 842
           KTRDFL  DM NL E S FH +L SFV+ AE DI W+LEEE RIM+LV+ST DYFHG++G
Sbjct: 766 KTRDFLRKDMSNLQEESDFHRSLASFVERAEVDITWMLEEENRIMTLVRSTVDYFHGHSG 825

Query: 843 KDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHR 902
           KDEGLRLF IVRDF  +LDK C +V+ +  K TK+ K E  T S+  +  Q    D+R +
Sbjct: 826 KDEGLRLFAIVRDFLKILDKVCNEVRKSTIKPTKNPKTEAPTVSAPPEVHQSSLQDMRQK 885

Query: 903 LFPAITERRVED 914
           LFP I ERR+++
Sbjct: 886 LFPVIAERRMDN 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	921
TAIR|locus:2172129	900	Fh5 "formin homology5" [Arabid	0.519	0.531	0.654	1.1e-183
TAIR|locus:2158576	899	FH6 "formin homolog 6" [Arabid	0.277	0.284	0.561	3.9e-100
TAIR|locus:2094493	1051	AFH1 "formin homology 1" [Arab	0.270	0.236	0.589	8.5e-96
TAIR|locus:2079807	884	AT3G05470 [Arabidopsis thalian	0.440	0.459	0.467	2.6e-94
TAIR|locus:2043989	894	AT2G43800 [Arabidopsis thalian	0.447	0.460	0.454	7.1e-90
TAIR|locus:2025981	929	AT1G59910 [Arabidopsis thalian	0.453	0.449	0.393	1.2e-81
TAIR|locus:2020568	760	FH8 "formin 8" [Arabidopsis th	0.446	0.540	0.391	1.2e-75
TAIR|locus:2156248	782	AT5G48360 [Arabidopsis thalian	0.234	0.276	0.475	3.2e-65
TAIR|locus:2079711	841	AT3G07540 [Arabidopsis thalian	0.260	0.285	0.356	3.5e-45
MGI|MGI:1194490	1255	Diap1 "diaphanous homolog 1 (D	0.258	0.189	0.305	3.2e-27

TAIR|locus:2172129 Fh5 "formin homology5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1553 (551.7 bits), Expect = 1.1e-183, Sum P(3) = 1.1e-183
 Identities = 317/484 (65%), Positives = 366/484 (75%)

Query:   441 LGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIET 500
             LG K      G     D +APKTKLKPFFWDKV ANP++SMVW+ I+SGSFQFNEEMIE+
Sbjct:   419 LGPKAPRPPSGPADALDDDAPKTKLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIES 478

Query:   501 LFGYXXXXXXXXXXXXXLDTG--PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN 558
             LFGY                   PQ++QI++ KK QNLSI+LRALN T EEVCDAL EGN
Sbjct:   479 LFGYAAADKNKNDKKGSSGQAALPQFVQILEPKKGQNLSILLRALNATTEEVCDALREGN 538

Query:   559 ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMC 618
             ELP E IQTLLKMAPT EEELKLRL+ GE++QLG AERFLKA+VDIPF+FKRLEALLFMC
Sbjct:   539 ELPVEFIQTLLKMAPTPEEELKLRLYCGEIAQLGSAERFLKAVVDIPFAFKRLEALLFMC 598

Query:   619 TLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTL 678
             TL EE++  KESF+ LEVACKELR SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTL
Sbjct:   599 TLHEEMAFVKESFQKLEVACKELRGSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTL 658

Query:   679 LKLSDVKGVDGKTTLLHFVVQEIIXXXXXXXXXXXXXXXXXXXXKTDDLL-EETSKSNET 737
             LKL+DVKG DGKTTLLHFVVQEII                    KT+DLL EETS+  E+
Sbjct:   659 LKLADVKGTDGKTTLLHFVVQEIIRTEGVRAARTIRESQSFSSVKTEDLLVEETSE--ES 716

Query:   738 DEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGE 797
             +E+YRNLGL+ VS LSSELE+VKK+A IDAD LTGTV K+GHAL K RDF+N++MK+ GE
Sbjct:   717 EENYRNLGLEKVSGLSSELEHVKKSANIDADGLTGTVLKMGHALSKARDFVNSEMKSSGE 776

Query:   798 NSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFF 857
              SGF E L+ F+QNAEG IM +LEEEKRIM+LVKSTGDYFHG AGKDEGLRLF IVRDF 
Sbjct:   777 ESGFREALEDFIQNAEGSIMSILEEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFL 836

Query:   858 IMLDKACKQVKDAPKKSTKSLKKEGXXXXXXXXXXXXX-XXXLRHRLFPAITERRVEDFS 916
             I+LDK+CK+V++A  +  +  +K+G                  R +LFPAITERRV+  S
Sbjct:   837 IILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITERRVDQSS 896

Query:   917 SDEE 920
             SD +
Sbjct:   897 SDSD 900

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009960 "endosperm development" evidence=IMP

GO:0030041 "actin filament polymerization" evidence=IDA

GO:0045010 "actin nucleation" evidence=IDA

GO:0048317 "seed morphogenesis" evidence=IGI

TAIR|locus:2158576 FH6 "formin homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 3.9e-100, Sum P(3) = 3.9e-100
 Identities = 146/260 (56%), Positives = 184/260 (70%)

Query:   446 SSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYX 505
             S+ S+    +GD +  K KLKP  WDKV A+ D + VW Q+KS SFQ NE+ +E LFG  
Sbjct:   443 SAGSLEKSGDGDTDPSKPKLKPLHWDKVRASSDRATVWDQLKSSSFQLNEDRMEHLFGCN 502

Query:   506 XXXXXXXX--XXXXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELP 561
                           +       +++D KK+QN++I+LRALNVT EEV +AL +GN   L 
Sbjct:   503 SGSSAPKEPVRRSVIPLAENENRVLDPKKSQNIAILLRALNVTREEVSEALTDGNPESLG 562

Query:   562 AELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQ 621
             AEL++TL+KMAPT EEE+KLR ++G++S+LG AERFLK ++DIPF+FKR+EA+L+     
Sbjct:   563 AELLETLVKMAPTKEEEIKLREYSGDVSKLGTAERFLKTILDIPFAFKRVEAMLYRANFD 622

Query:   622 EEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKL 681
              EV   + SF+ LE A  EL+ SRLFLKLLEAVL TGNRMN GT RG A AFKLDTLLKL
Sbjct:   623 AEVKYLRNSFQTLEEASLELKASRLFLKLLEAVLMTGNRMNVGTNRGDAIAFKLDTLLKL 682

Query:   682 SDVKGVDGKTTLLHFVVQEI 701
              D+KGVDGKTTLLHFVVQEI
Sbjct:   683 VDIKGVDGKTTLLHFVVQEI 702

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2094493 AFH1 "formin homology 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 8.5e-96, Sum P(2) = 8.5e-96
 Identities = 151/256 (58%), Positives = 186/256 (72%)

Query:   454 AEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXXX 513
             +E     PK KLK   WDKV A+ D  MVW  ++S SF+ +EEMIETLF           
Sbjct:   587 SEAAEETPKPKLKALHWDKVRASSDREMVWDHLRSSSFKLDEEMIETLFVAKSLNNKPNQ 646

Query:   514 XXXX----LDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQT 567
                     L +  Q  +++D KKAQN++I+LRALNVT+EEVC+ALLEGN   L  EL+++
Sbjct:   647 SQTTPRCVLPSPNQENRVLDPKKAQNIAILLRALNVTIEEVCEALLEGNADTLGTELLES 706

Query:   568 LLKMAPTAEEELKLRLFNGELS-QLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSA 626
             LLKMAPT EEE KL+ +N +   +LG AE+FLKA++DIPF+FKR++A+L++   + EV  
Sbjct:   707 LLKMAPTKEEERKLKAYNDDSPVKLGHAEKFLKAMLDIPFAFKRVDAMLYVANFESEVEY 766

Query:   627 TKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 686
              K+SFE LE AC+ELRNSR+FLKLLEAVLKTGNRMN GT RG A AFKLDTLLKL DVKG
Sbjct:   767 LKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 826

Query:   687 VDGKTTLLHFVVQEII 702
              DGKTTLLHFVVQEII
Sbjct:   827 ADGKTTLLHFVVQEII 842

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=IDA

GO:0051016 "barbed-end actin filament capping" evidence=IDA

TAIR|locus:2079807 AT3G05470 [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
 Identities = 194/415 (46%), Positives = 257/415 (61%)

Query:   456 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXXXXX 515
             G   AP  KLKP  WDKV A PD +MVW ++++ SF+ +EEMIE+LFGY           
Sbjct:   462 GKDGAPLPKLKPLHWDKVRATPDRTMVWDKLRTSSFELDEEMIESLFGYTMQSSTKNEEG 521

Query:   516 XXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTA 575
                   P    +++ K+ QN +I+L+ALN T +++C AL +G  L  + ++ L+KM PT 
Sbjct:   522 KSKTPSPGK-HLLEPKRLQNFTILLKALNATADQICSALGKGEGLCLQQLEALVKMVPTK 580

Query:   576 EEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILE 635
             EEELKLR + G + +LG AE+FL+ALV +PF+F+R EA+L+  T ++EV   + SF +LE
Sbjct:   581 EEELKLRSYKGAVDELGSAEKFLRALVGVPFAFQRAEAMLYRETFEDEVVHLRNSFSMLE 640

Query:   636 VACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLH 695
              ACKEL++SRLFLKLLEAVLKTGNRMN GT RGGA+AFKLD LLKLSDVKG DGKTTLLH
Sbjct:   641 EACKELKSSRLFLKLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLSDVKGTDGKTTLLH 700

Query:   696 FVVQEIIXXXXXXXXXXXXXXXXXXXXKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSE 755
             FVVQEI                       +   EE       +E YR +GL  VS L++E
Sbjct:   701 FVVQEISRSEGIRVSDSIMGRIMNQRSNKNRTPEEK------EEDYRRMGLDLVSGLNTE 754

Query:   756 LENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGD 815
             L NVKK A ID + L  +VS L   L +     +  +K   EN  F  ++ SF++  E  
Sbjct:   755 LRNVKKTATIDLEGLVTSVSNLRDGLGQLSCLASEKLKGDEENRAFVSSMSSFLRYGEKS 814

Query:   816 IMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIVRDFFIMLDKACKQVK 868
             +  L E+EKRIM  V    +YFHG+   DE   LR+F IVRDF  MLD  C++++
Sbjct:   815 LEELREDEKRIMERVGEIAEYFHGDVRGDEKNPLRIFVIVRDFLGMLDHVCRELR 869

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2043989 AT2G43800 [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
 Identities = 195/429 (45%), Positives = 267/429 (62%)

Query:   445 HSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGY 504
             HS     +  E      K KLK   WDKV A+    MVW QIKS SFQ NEEMIETLF  
Sbjct:   428 HSLPGDDSDPEKKVETMKPKLKTLHWDKVRASSSRVMVWDQIKSNSFQVNEEMIETLF-- 485

Query:   505 XXXXXXXXXXXXXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPA 562
                          + +  Q  + +D +K+ N++I+LRALNVT +EVC+AL+EGN   L  
Sbjct:   486 KVNDPTSRTRDGVVQSVSQENRFLDPRKSHNIAILLRALNVTADEVCEALIEGNSDTLGP 545

Query:   563 ELIQTLLKMAPTAEEELKLRLF----NGELSQLGPAERFLKALVDIPFSFKRLEALLFMC 618
             EL++ LLKMAPT EEE KL+      +G  S++GPAE+FLKAL++IPF+FKR++A+L++ 
Sbjct:   546 ELLECLLKMAPTKEEEDKLKELKDDDDGSPSKIGPAEKFLKALLNIPFAFKRIDAMLYIV 605

Query:   619 TLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTL 678
               + E+     SF+ LE A  EL+N+R+FLKLLEAVLKTGNRMN GT RG A AFKLDTL
Sbjct:   606 KFESEIEYLNRSFDTLEAATGELKNTRMFLKLLEAVLKTGNRMNIGTNRGDAHAFKLDTL 665

Query:   679 LKLSDVKGVDGKTTLLHFVVQEIIXXXXXXXXXXXXXXXXXXXXKTDDLLEETSKSNETD 738
             LKL D+KG DGKTTLLHFVVQEII                      D++ E+++  ++ +
Sbjct:   666 LKLVDIKGADGKTTLLHFVVQEIIKFEGARVPFTPSQSHIG-----DNMAEQSAFQDDLE 720

Query:   739 EHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGEN 798
                + LGLQ VS LSS+L NVKKAAA+D++SL    +++   + K ++ + T++K     
Sbjct:   721 --LKKLGLQVVSGLSSQLINVKKAAAMDSNSLINETAEIARGIAKVKEVI-TELKQETGV 777

Query:   799 SGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFI 858
               F E++ SF+   E +I  L      +M +VK   +YFHGN+ +    R+F +VRDF  
Sbjct:   778 ERFLESMNSFLNKGEKEITELQSHGDNVMKMVKEVTEYFHGNS-ETHPFRIFAVVRDFLT 836

Query:   859 MLDKACKQV 867
             +LD+ CK+V
Sbjct:   837 ILDQVCKEV 845

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2025981 AT1G59910 [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.2e-81, Sum P(4) = 1.2e-81
 Identities = 173/440 (39%), Positives = 238/440 (54%)

Query:   444 KHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPD--NSMVWHQIKSGSFQFNEEMIETL 501
             K   +S+  G   D   PK  LKP  WDK+  NPD   SMVWH+I  GSF F+ +++E L
Sbjct:   444 KSGETSLAVGKTEDPTQPK--LKPLHWDKM--NPDASRSMVWHKIDGGSFNFDGDLMEAL 499

Query:   502 FGYXXXXXXXXXXXXXLDTGPQYIQ-----IIDQKKAQNLSIMLRALNVTLEEVCDALLE 556
             FGY               T    +      I+D +K+QN +I+L++L +T EE+ D L E
Sbjct:   500 FGYVARKPSESNSVPQNQTVSNSVPHNQTYILDPRKSQNKAIVLKSLGMTKEEIIDLLTE 559

Query:   557 GNELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFL-KALVDIPFSFKRLEALL 615
             G++  ++ ++ L  +APT EE+ ++  F+GE   L  A+  L   L  +P +F R   +L
Sbjct:   560 GHDAESDTLEKLAGIAPTPEEQTEIIDFDGEPMTLAYADSLLFHILKAVPSAFNRFNVML 619

Query:   616 FMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKL 675
             F      EV+  K S   LE AC ELR   LF+KLLEA+LK GNRMN GT RG AQAF L
Sbjct:   620 FKINYGSEVAQQKGSLLTLESACNELRARGLFMKLLEAILKAGNRMNAGTARGNAQAFNL 679

Query:   676 DTLLKLSDVKGVDGKTTLLHFVVQEIIXXXXXXXXXXXXXXXXXXXXKTDDLLEETSKSN 735
               L KLSDVK VD KTTLLHFVV+E++                          E    S 
Sbjct:   680 TALRKLSDVKSVDAKTTLLHFVVEEVVRSEGKRAAMNKNMMSSDNGSG-----ENADMSR 734

Query:   736 ETDE-HYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKN 794
             E  E  +  +GL  +  LSSE  NVKKAA ID DS   T   LG  + +T+  L+   ++
Sbjct:   735 EEQEIEFIKMGLPIIGGLSSEFTNVKKAAGIDYDSFVATTLALGTRVKETKRLLD---QS 791

Query:   795 LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGL-RLFTIV 853
              G+  G    L+SF ++AE ++  + EE+ RIM LVK T +Y+   A K+  L +LF I+
Sbjct:   792 KGKEDGCLTKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGALKERNLFQLFVII 851

Query:   854 RDFFIMLDKACKQVKDAPKK 873
             RDF  M+D AC ++    +K
Sbjct:   852 RDFLGMVDNACSEIARNQRK 871

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2020568 FH8 "formin 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
 Identities = 166/424 (39%), Positives = 245/424 (57%)

Query:   453 GAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXX 512
             GA G   + + KLKP  WDKV  + D+SMVW +I  GSF F+ +++E LFGY        
Sbjct:   294 GASGGETSKQVKLKPLHWDKVNPDSDHSMVWDKIDRGSFSFDGDLMEALFGYVAVGKKSP 353

Query:   513 XXXXXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMA 572
                   +     I I+D +K+QN +I+L++L +T EE+ ++L+EGN+   + ++ L ++A
Sbjct:   354 EQGDEKNPKSTQIFILDPRKSQNTAIVLKSLGMTREELVESLIEGNDFVPDTLERLARIA 413

Query:   573 PTAEEELKLRLFNGELSQLGPAERFLKALV-DIPFSFKRLEALLFMCTLQEEVSATKESF 631
             PT EE+  +  F+G+ ++L  AE FL  L+  +P +F RL A LF      E++   +  
Sbjct:   414 PTKEEQSAILEFDGDTAKLADAETFLFHLLKSVPTAFTRLNAFLFRANYYPEMAHHSKCL 473

Query:   632 EILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKT 691
             + L++ACKELR+  LF+KLLEA+LK GNRMN GT RG AQAF L  LLKLSDVK VDGKT
Sbjct:   474 QTLDLACKELRSRGLFVKLLEAILKAGNRMNAGTARGNAQAFNLTALLKLSDVKSVDGKT 533

Query:   692 TLLHFVVQEIIXXXXXXXXXXXXXXXXXXXXKTD-----DLLEETSKSNETDEHYRNLGL 746
             +LL+FVV+E++                     ++       L+  SK  E ++ Y  LGL
Sbjct:   534 SLLNFVVEEVVRSEGKRCVMNRRSHSLTRSGSSNYNGGNSSLQVMSKE-EQEKEYLKLGL 592

Query:   747 QAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLK 806
               V  LSSE  NVKKAA +D +++  T S L       +  +  + ++ GE   F +T+ 
Sbjct:   593 PVVGGLSSEFSNVKKAACVDYETVVATCSALAVRAKDAKTVIG-ECED-GEGGRFVKTMM 650

Query:   807 SFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNA---GKDEGLRLFTIVRDFFIMLDKA 863
             +F+ + E ++     EE+++M LVK T DY+   A   GK+  L LF IVRDF  M+DK 
Sbjct:   651 TFLDSVEEEVKIAKGEERKVMELVKRTTDYYQAGAVTKGKNP-LHLFVIVRDFLAMVDKV 709

Query:   864 CKQV 867
             C  +
Sbjct:   710 CLDI 713

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005522 "profilin binding" evidence=IDA

GO:0009932 "cell tip growth" evidence=IMP

GO:0045010 "actin nucleation" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2156248 AT5G48360 [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 3.2e-65, Sum P(3) = 3.2e-65
 Identities = 109/229 (47%), Positives = 162/229 (70%)

Query:   477 PDNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXXXXXXXLDTGPQYIQIIDQKKAQNL 536
             P   + W +++S S + ++EM+ET+F                D  P   Q++D +KAQN+
Sbjct:   428 PPKQLHWERLRSSSSKLSKEMVETMF--------IANSSNPRDL-PIQNQVLDPRKAQNI 478

Query:   537 SIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPA 594
             + +L+ LN++ ++VC ALL+G+   L AEL++ L ++AP+ EEE KL+ F+ + S++GPA
Sbjct:   479 ATLLQLLNLSTKDVCQALLDGDCDVLGAELLECLSRLAPSKEEERKLKSFS-DGSEIGPA 537

Query:   595 ERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAV 654
             ERFLK L+ +PF FKR++ALLF+     E+   ++SF +++VAC+ELRNSR+F  LLEA+
Sbjct:   538 ERFLKELLHVPFVFKRVDALLFVANFHSEIKRLRKSFSVVQVACEELRNSRMFSILLEAI 597

Query:   655 LKTGNRMNDGTFR-GGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEII 702
             LKTGN M+  T R G A AFKLDTLLKL DVKG+DG+++LLHFVVQE++
Sbjct:   598 LKTGNMMSVRTNRCGDADAFKLDTLLKLVDVKGLDGRSSLLHFVVQEMM 646

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0042127 "regulation of cell proliferation" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2079711 AT3G07540 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 3.5e-45, Sum P(3) = 3.5e-45
 Identities = 94/264 (35%), Positives = 150/264 (56%)

Query:   442 GQKHSSSSVGAGA-EGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIET 500
             G+K S S +     EG  + PK KLKP  WDKV  +   +  W ++   S   N +    
Sbjct:   455 GKKLSFSELPQSCGEGTTDRPKPKLKPLPWDKVRPSSRRTNTWDRLPYNSSNANSKQ--- 511

Query:   501 LFGYXXXXXXXXXXXXXLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN-- 558
                              L    Q  +++D +K+QN++++L  L +T  +VC AL +G+  
Sbjct:   512 -----------RSLSCDLPMLNQESKVLDPRKSQNVAVLLTTLKLTTNDVCQALRDGHYD 560

Query:   559 ELPAELIQTLLKMAPTAEEELKLRLFNGE-LSQLGPAERFLKALVDIPFSFKRLEALLFM 617
              L  EL+++L ++AP+ EEE KL  ++ + + +L P+ERFLK L+++PF FKR++ALL +
Sbjct:   561 ALGVELLESLARVAPSEEEEKKLISYSDDSVIKLAPSERFLKELLNVPFVFKRVDALLSV 620

Query:   618 CTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDT 677
              +   +V   K SF +++ AC+ LRNSR+ L+L+ A L+ G +       G A  FKL+ 
Sbjct:   621 ASFDSKVKHLKRSFSVIQAACEALRNSRMLLRLVGATLEAGMKS------GNAHDFKLEA 674

Query:   678 LLKLSDVKGVDGKTTLLHFVVQEI 701
             LL L D+K  DG+T++L  VVQ+I
Sbjct:   675 LLGLVDIKSSDGRTSILDSVVQKI 698

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

MGI|MGI:1194490 Diap1 "diaphanous homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 282 (104.3 bits), Expect = 3.2e-27, Sum P(3) = 3.2e-27
 Identities = 77/252 (30%), Positives = 113/252 (44%)

Query:   461 PKTKLKPFFWDKVLANP-DNSMVWHQIKSGSFQFNEEMIETLFGYXXXXXXXXXXXXXLD 519
             P+ +L+   W K +A        W ++K   F+ NE   +    +              +
Sbjct:   758 PEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQ-E 816

Query:   520 TGPQY----------IQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQT 567
              G +           ++++D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ 
Sbjct:   817 GGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQN 876

Query:   568 LLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSAT 627
             L+K  P  E+   L     E   L  +E+F   +  +P    RL A+LF     E+V   
Sbjct:   877 LIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENI 936

Query:   628 KESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGV 687
             K     +  AC+ELR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  
Sbjct:   937 KPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSA 996

Query:   688 DGKTTLLHFVVQ 699
             D K TLLHF+ +
Sbjct:   997 DQKMTLLHFLAE 1008

GO:0003779 "actin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005522 "profilin binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016043 "cellular component organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IDA

GO:0030041 "actin filament polymerization" evidence=IDA

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0031175 "neuron projection development" evidence=IDA

GO:0032587 "ruffle membrane" evidence=IDA

GO:0032886 "regulation of microtubule-based process" evidence=ISO

GO:0035372 "protein localization to microtubule" evidence=ISO

GO:0042802 "identical protein binding" evidence=IPI

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IDA

GO:0044325 "ion channel binding" evidence=ISO;IPI

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0071420 "cellular response to histamine" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94B77	FH5_ARATH	No assigned EC number	0.5395	0.9435	0.9655	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	921
pfam02181	372	pfam02181, FH2, Formin Homology 2 Domain	1e-127
smart00498	392	smart00498, FH2, Formin Homology 2 Domain	1e-101
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-16
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-14
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-13
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-12
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-11
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-11
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	4e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-10
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-10
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-10
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	2e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-10
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-10
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-10
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	8e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-09
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	2e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-09
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	4e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-09
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	7e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-08
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	2e-08
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-08
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-08
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	5e-08
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	5e-08
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	5e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-08
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	6e-08
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	6e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-08
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	6e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-08
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	7e-08
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	9e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-07
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	1e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-07
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-07
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	2e-07
PHA03264	416	PHA03264, PHA03264, envelope glycoprotein D; Provi	2e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-07
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	2e-07
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	2e-07
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-07
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-07
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	3e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-07
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-07
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-07
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-07
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	4e-07
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	4e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	5e-07
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	5e-07
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	5e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-07
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	6e-07
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	6e-07
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	6e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-07
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	8e-07
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	9e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-06
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	1e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-06
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	2e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	2e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-06
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-06
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-06
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	2e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-06
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	2e-06
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	2e-06
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-06
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-06
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	3e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	3e-06
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	3e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-06
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	4e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-06
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	4e-06
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	4e-06
PHA01732	94	PHA01732, PHA01732, proline-rich protein	4e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-06
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	5e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-06
PRK06549	130	PRK06549, PRK06549, acetyl-CoA carboxylase biotin	5e-06
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	6e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	6e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-06
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	7e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-06
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	7e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	7e-06
pfam04959	211	pfam04959, ARS2, Arsenite-resistance protein 2	7e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	8e-06
pfam03251	458	pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote	8e-06
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	8e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	1e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-05
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	1e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-05
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-05
PHA03381	290	PHA03381, PHA03381, tegument protein VP22; Provisi	1e-05
pfam04621	336	pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain t	1e-05
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	1e-05
pfam11029	136	pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP	1e-05
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	1e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-05
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	2e-05
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-05
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-05
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	2e-05
TIGR02557	201	TIGR02557, HpaP, type III secretion protein HpaP	2e-05
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	2e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-05
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	3e-05
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	3e-05
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	3e-05
pfam14179	110	pfam14179, YppG, YppG-like protein	3e-05
pfam14179	110	pfam14179, YppG, YppG-like protein	3e-05
COG2948	360	COG2948, VirB10, Type IV secretory pathway, VirB10	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-05
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	4e-05
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	4e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-05
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	4e-05
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	4e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-05
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	4e-05
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	4e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	5e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	5e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-05
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	5e-05
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	5e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-05
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	5e-05
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	5e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	5e-05
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	5e-05
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	5e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-05
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	6e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	7e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	7e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	8e-05
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	8e-05
pfam07271	279	pfam07271, Cytadhesin_P30, Cytadhesin P30/P32	8e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	9e-05
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	9e-05
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	9e-05
pfam04487	206	pfam04487, CITED, CITED	9e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	1e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	1e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	1e-04
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	1e-04
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	1e-04
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	1e-04
pfam06003	264	pfam06003, SMN, Survival motor neuron protein (SMN	1e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-04
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	2e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	2e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-04
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	2e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-04
pfam05044	908	pfam05044, Prox1, Homeobox prospero-like protein (	2e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	2e-04
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	2e-04
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	2e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	2e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	2e-04
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	2e-04
pfam13254	414	pfam13254, DUF4045, Domain of unknown function (DU	2e-04
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	3e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	3e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-04
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	3e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	3e-04
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	3e-04
pfam07415	489	pfam07415, Herpes_LMP2, Gammaherpesvirus latent me	3e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	3e-04
pfam13908	177	pfam13908, Shisa, Wnt and FGF inhibitory regulator	3e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	4e-04
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	4e-04
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	4e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	4e-04
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	4e-04
PHA01732	94	PHA01732, PHA01732, proline-rich protein	4e-04
pfam14179	110	pfam14179, YppG, YppG-like protein	4e-04
pfam14179	110	pfam14179, YppG, YppG-like protein	4e-04
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	4e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	5e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	5e-04
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	5e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	5e-04
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	5e-04
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	5e-04
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	5e-04
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	5e-04
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
pfam14179	110	pfam14179, YppG, YppG-like protein	7e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	7e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	7e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	8e-04
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	8e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	8e-04
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	8e-04
PRK13855	376	PRK13855, PRK13855, type IV secretion system prote	8e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-04
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	9e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	9e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	0.001
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	0.001
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.001
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.001
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.001
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.001
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.001
TIGR02557	201	TIGR02557, HpaP, type III secretion protein HpaP	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.001
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.001
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.001
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
cd03784	401	cd03784, GT1_Gtf_like, This family includes the Gt	0.001
PRK00030	292	PRK00030, minC, septum formation inhibitor; Provis	0.001
pfam08549	669	pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown	0.001
pfam01690	460	pfam01690, PLRV_ORF5, Potato leaf roll virus readt	0.001
PHA03301	226	PHA03301, PHA03301, envelope glycoprotein L; Provi	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.002
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.002
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.002
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.002
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.002
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.002
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	0.002
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	0.002
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	0.002
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.002
pfam00716	326	pfam00716, Peptidase_S21, Assemblin (Peptidase fam	0.002
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.002
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.002
pfam11162	119	pfam11162, DUF2946, Protein of unknown function (D	0.002
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	0.002
PRK00575	92	PRK00575, tatA, twin arginine translocase protein	0.002
COG3921	300	COG3921, COG3921, Uncharacterized protein conserve	0.002
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	0.002
PRK09424	509	PRK09424, pntA, NAD(P) transhydrogenase subunit al	0.002
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.002
pfam06482	291	pfam06482, Endostatin, Collagenase NC10 and Endost	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.003
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.003
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	0.003
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.003
pfam07271	279	pfam07271, Cytadhesin_P30, Cytadhesin P30/P32	0.003
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.003
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.003
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.003
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.003
TIGR03921	350	TIGR03921, T7SS_mycosin, type VII secretion-associ	0.003
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	0.003
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	0.004
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	0.004
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.004
PHA01732	94	PHA01732, PHA01732, proline-rich protein	0.004
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.004
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.004
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	0.004
PHA03301	226	PHA03301, PHA03301, envelope glycoprotein L; Provi	0.004
COG3898	531	COG3898, COG3898, Uncharacterized membrane-bound p	0.004
pfam08347	200	pfam08347, CTNNB1_binding, N-terminal CTNNB1 bindi	0.004
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	0.004
cd07219	382	cd07219, Pat_PNPLA1, Patatin-like phospholipase do	0.004

>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain

 Score =  387 bits (995), Expect = e-127
 Identities = 154/413 (37%), Positives = 208/413 (50%), Gaps = 47/413 (11%)

Query: 455 EGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKK 514
           +     PK KLKP  WDKV    D   VW ++   SF+ + ++ E    +S K+K +K K
Sbjct: 1   KKKEPKPKKKLKPLHWDKVNPAQDRGTVWDELDEESFEKDLDLSELEELFSAKAKKKKSK 60

Query: 515 G----SSLDTGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTL 568
                SS     + I ++D K++QN++I+LR L +  EE+  A+LE +E  L  EL++ L
Sbjct: 61  KSEKKSSSKKKKKEISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENL 120

Query: 569 LKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATK 628
           LKMAPT EE  KL+ + G+ S+LG AE+FL  L  IP   +RLEALLF  T +EEV   K
Sbjct: 121 LKMAPTKEELKKLKEYKGDPSKLGRAEQFLLELSKIPRLEERLEALLFKSTFEEEVEELK 180

Query: 629 ESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVD 688
            S E LE A +ELR SR F KLLE +L  GN MN GT RG A+ FKL +LLKLSD K  D
Sbjct: 181 PSLETLEAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKSTD 240

Query: 689 GKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQA 748
            KTTLLH++V+ I                                            L  
Sbjct: 241 NKTTLLHYLVKIIRE-----------------------------------------KLPD 259

Query: 749 VSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSF 808
           +   SSEL +V+KAA +D + L   V +L   L K    L     +   +  F E +K F
Sbjct: 260 LLDFSSELSHVEKAAKVDLEQLEKDVKELEKGLKKLERELELSALDEHPDDKFVEKMKEF 319

Query: 809 VQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLD 861
           ++ AE  +  L    K  M L K   +YF  +  +      F I+RDF  M  
Sbjct: 320 LEEAEEKLDKLESLLKEAMELFKELTEYFGEDPKETSPEEFFKILRDFLRMFK 372

Length = 372

>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain

 Score =  319 bits (820), Expect = e-101
 Identities = 151/430 (35%), Positives = 213/430 (49%), Gaps = 55/430 (12%)

Query: 456 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKG 515
                PK KLKP  WDK+  +  +  VW +I   S + + + +E LF   EK+K+  K  
Sbjct: 1   KKEPKPKKKLKPLHWDKLNPSDLSGTVWDKIDEES-EGDLDELEELFSAKEKTKSASKDV 59

Query: 516 SSLDTG-----PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTL 568
           S   +       Q  +I+D K++QNL+I+LR L+++ EE+ +A+LEG+E  L  +L++ L
Sbjct: 60  SEKKSILKKKASQEFKILDPKRSQNLAILLRKLHMSYEEIKEAILEGDEDVLSVDLLEQL 119

Query: 569 LKMAPTAEEELKLRLFNGE-LSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSAT 627
           LK APT EE  KLR +  E   +L  AE+FL  + +IP+  +RL ALLF    +EEV   
Sbjct: 120 LKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEERLNALLFKANFEEEVEDL 179

Query: 628 KESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGV 687
           K   E +E AC+ELR S+ F KLLE +L  GN MN G+ RG A  FKL +LLKLSDVK  
Sbjct: 180 KPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSDVKSA 239

Query: 688 DGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQ 747
           D KTTLLHF+V+ I +                                         GL 
Sbjct: 240 DNKTTLLHFLVKIIRKKY-------------------------------------LGGLS 262

Query: 748 AVSHLSSELENV----KKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFH- 802
              +L  +   V     KAA    D L   +S L     K  ++   D K+      F  
Sbjct: 263 DPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKD 322

Query: 803 --ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG--LRLFTIVRDFFI 858
             E LK F + AE +I    EEE+R   LVK T +Y   ++ + E      F + RDF  
Sbjct: 323 FNEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLG 382

Query: 859 MLDKACKQVK 868
           +LD   +++ 
Sbjct: 383 VLDSLLEELG 392

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain. Length = 392

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 79.6 bits (196), Expect = 5e-16
 Identities = 36/75 (48%), Positives = 38/75 (50%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           P    A+P P  PP S     P+   PPPPPPPA  P P P     APPPPP     PPP
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP 93

Query: 417 PPRGGPAPRPPPPMP 431
           PP    AP PP P P
Sbjct: 94  PPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 79.2 bits (195), Expect = 8e-15
 Identities = 76/304 (25%), Positives = 92/304 (30%), Gaps = 48/304 (15%)

Query: 146  PQPDAPRQNQHLILPRS-LAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPR 204
            P P  P    H ++  + L   P  A   +PA   APAP  A    PAT        RP 
Sbjct: 2703 PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP-PAVPAGPATPGGPARPARPP 2761

Query: 205  TPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDKTNHHNTVIIAVVVTAAVTFVAAAL 264
            T   P  P+  ++         T     + + +        +        AAV   AAAL
Sbjct: 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES---RESLPSPWDPADPPAAVLAPAAAL 2818

Query: 265  LFLCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGT 324
                                 P   L     +                  TA     G  
Sbjct: 2819 ----------------PPAASPAGPLPPPTSAQP----------------TAPPPPPGPP 2846

Query: 325  AKSFNENGQVLP--PL-KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP 381
              S    G V P   + + PP R  +     P   P    A P       S    PP  P
Sbjct: 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESF-ALPPDQP 2905

Query: 382  PPPPPPPPAPRP---PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 438
              PP P   P P   P  P P    PPPPP P P PP  P   PA    P       VP+
Sbjct: 2906 ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS----GAVPQ 2961

Query: 439  PPLG 442
            P LG
Sbjct: 2962 PWLG 2965

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 78.4 bits (193), Expect = 2e-14
 Identities = 40/140 (28%), Positives = 49/140 (35%), Gaps = 10/140 (7%)

Query: 336  PPLKPPPGRVGSTLQGMPPLKPPPGRAEPL-------PHEPPASLRPHPPSGPPPPPPPP 388
            PP  PP     +  + +PP +P P  +EP        P  PP S RP  P      P  P
Sbjct: 2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGP 2611

Query: 389  PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP-SGSKVPRPPLGQKHSS 447
              P P P    AP   PPPP P P    P    P   PPP  P       R    ++   
Sbjct: 2612 APPSPLPPDTHAP--DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669

Query: 448  SSVGAGAEGDANAPKTKLKP 467
                A A      P+ +   
Sbjct: 2670 LGRAAQASSPPQRPRRRAAR 2689

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 76.5 bits (188), Expect = 5e-14
 Identities = 73/349 (20%), Positives = 99/349 (28%), Gaps = 63/349 (18%)

Query: 151  PRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPF 210
            PR+ + L      +  P R    A  P V    + + A  P   PT +  P      TP 
Sbjct: 2664 PRRARRLGRAAQASSPPQRPRRRAARPTVGS--LTSLADPPPPPPTPEPAPHALVSATPL 2721

Query: 211  FPSVSS----SSPTVGDNSTTNSGSGTSARADDKTNHHNTVIIAVVVTAAVTFVAAALLF 266
             P  ++    S       +     +G +                   TA     A     
Sbjct: 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR------PARPPTTAGPPAPAPPA-- 2773

Query: 267  LCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAK 326
                         R+     + SLS S  S+ S            +D      AV   A 
Sbjct: 2774 ------APAAGPPRRLTRPAVASLSESRESLPS-----------PWDPADPPAAVLAPAA 2816

Query: 327  SFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPG----------------RAEPLPHEPP 370
            +         PL PP     S     PP  P P                 R  P    P 
Sbjct: 2817 ALPPAASPAGPLPPPT----SAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPA 2872

Query: 371  A--SLRPHPP----SGPPPPPPPPPAPRPPPAPAPAPR-APPPPPKPGPPPPPPPRGGPA 423
            A  +    PP    + P           PP  P   P+   PPPP+P P PPPPP+  P 
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP 2932

Query: 424  PRPP-----PPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
            P PP     P  P+                 +GA   G    P+ ++  
Sbjct: 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ 2981

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 75.4 bits (186), Expect = 9e-14
 Identities = 43/167 (25%), Positives = 55/167 (32%), Gaps = 17/167 (10%)

Query: 334 VLPPLKPPPGRVGSTLQGMPPLKPPPGR--AEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
           +L  L+    R+G       P    P    A P     PA+  P   + P P   P PAP
Sbjct: 374 LLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP 433

Query: 392 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP---------PPPMPSGSKVPRPPLG 442
            P PAPAP   A   P    P PPP       P P           P P+    P P   
Sbjct: 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493

Query: 443 QKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLAN-PDNSMVWHQIKS 488
               ++        DA   + +     W ++LA  P  S     I  
Sbjct: 494 PAAPAAPAAPAGADDAATLRER-----WPEILAAVPKRSRKTWAILL 535

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 75.4 bits (186), Expect = 9e-14
 Identities = 65/350 (18%), Positives = 89/350 (25%), Gaps = 47/350 (13%)

Query: 146 PQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRT 205
           P P +P  N       S       ++ PAPAPA AP P  A A AP  +P   A P    
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498

Query: 206 PPTP-----FFPSVSSSSPTV-----GDNSTTNSGSGTSARADD---------------- 239
            P          ++    P +       +  T +     A                    
Sbjct: 499 APAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRGDTLVLGFSTGGLA 558

Query: 240 ---KTNHHNTVIIAVV-----VTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLS 291
               +  +  V++  +         V  V               G+ G +    P  S  
Sbjct: 559 RRFASPGNAEVLVTALAEELGGDWQVEAVVGP----------APGAAGGEGPPAPASSGP 608

Query: 292 LSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQG 351
             + +  +  +           G A+  A    A      G   P   P    V     G
Sbjct: 609 PEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAA---PAPGVAAPEHHPKHVAVPDASDG 665

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
                   G A P    P  +           P  P PAP   P    A      PP+  
Sbjct: 666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA 725

Query: 412 PPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
                P      P P PP P     P     Q     +    A   A  P
Sbjct: 726 QGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775

Length = 824

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 29/71 (40%), Positives = 31/71 (43%)

Query: 370 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
           PA+    P   PPPP     AP P   P P P A PP P+P  P   PP     P  PPP
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP 93

Query: 430 MPSGSKVPRPP 440
            P     P PP
Sbjct: 94  PPVDPNAPPPP 104

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 73.9 bits (182), Expect = 2e-13
 Identities = 64/331 (19%), Positives = 91/331 (27%), Gaps = 60/331 (18%)

Query: 146 PQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRT 205
           P P  P    +     + +  P  A +  PAPA A AP    A APA          P  
Sbjct: 437 PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAA 496

Query: 206 PPTPFFPSVSSSSPTV------------GDNSTTNSGSGTSARADD-------------- 239
           P  P  P+ +  + T+              +  T +     A                  
Sbjct: 497 PAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRGDTLVLGFSTGG 556

Query: 240 -----KTNHHNTVIIAVV-----VTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLS 289
                 +  +  V++  +         V  V               G+ G +    P  S
Sbjct: 557 LARRFASPGNAEVLVTALAEELGGDWQVEAVVGP----------APGAAGGEGPPAPASS 606

Query: 290 LSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTL 349
               + +  +  +              +  A  G A +  E      P    P      +
Sbjct: 607 GPPEEAARPAAPAAP---------AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657

Query: 350 QGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 409
                     G         PA+    PP  P P  P  PA   P  PAPAP A PP  +
Sbjct: 658 AVPDASDGGDGWPAKAGGAAPAA----PPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713

Query: 410 PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
              P   PP+       P P      VP PP
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAADDP-VPLPP 743

Length = 824

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 70.5 bits (172), Expect = 3e-12
 Identities = 42/115 (36%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 335 LPPLKPPPGRVGSTLQGMPPLKPP---PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
           + P   PPGR           +PP   PGRA P    P  +  P    G   PP   P  
Sbjct: 704 MRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 763

Query: 392 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV--PRPPLGQK 444
             PPA AP    P PPP+  P P   PRG P P+PPP     S    PR   GQ+
Sbjct: 764 ARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQ 818

Length = 991

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 27/67 (40%), Positives = 29/67 (43%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
           PP  P      P    PPP P PA    P P  P   PPPPP    AP PPP  P+    
Sbjct: 44  PPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPP 103

Query: 437 PRPPLGQ 443
           P P  G+
Sbjct: 104 PAPEPGR 110

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 70.0 bits (172), Expect = 4e-12
 Identities = 63/339 (18%), Positives = 88/339 (25%), Gaps = 42/339 (12%)

Query: 146 PQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRT 205
             P      Q    P      P+ A       A +P P  A +  PA +P    +P    
Sbjct: 421 AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP 480

Query: 206 PPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDK--------TNHHNTVIIAVVVTAAV 257
            P P      +++P         +G+  +A   ++                  ++  A V
Sbjct: 481 APAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATV 540

Query: 258 TFVAAALLFLCCSRFCRTGSGGRQNDER--PLLSLSLSDYSVGSGNSKEEKLDIGKFDGT 315
             V    L L    F   G   R        +L  +L++                +  G 
Sbjct: 541 LGVRGDTLVL---GFSTGGLARRFASPGNAEVLVTALAE----------------ELGGD 581

Query: 316 ASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP 375
               AV G A           P    P    +          P   A       PA    
Sbjct: 582 WQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASA 641

Query: 376 HPPSGPPPPPPPP-----------PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG--P 422
            P  G   P   P               P  A   AP APPP P P  P  P       P
Sbjct: 642 APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

Query: 423 APRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
           AP P    P+G          + +  +       D   P
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 69.2 bits (169), Expect = 1e-11
 Identities = 45/152 (29%), Positives = 51/152 (33%), Gaps = 16/152 (10%)

Query: 336  PPLKPPPGRV---------GSTLQGMPPLKPPPGRAEPLPHEPPASL-RPHPPSGPPPPP 385
            P   P PGRV         G   Q   P + P  RA         SL  P PP   P P 
Sbjct: 2652 PRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA 2711

Query: 386  PPP--PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR----GGPAPRPPPPMPSGSKVPRP 439
            P     A   PP PA A +A P  P    PP  P      GGPA    PP  +G   P P
Sbjct: 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP 2771

Query: 440  PLGQKHSSSSVGAGAEGDANAPKTKLKPFFWD 471
            P                 + +   +  P  WD
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLPSPWD 2803

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 30/69 (43%), Positives = 31/69 (44%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
           P   PPP         P A   P PP+ PP P P  P   PPP PA     PPPP  P  
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100

Query: 413 PPPPPPRGG 421
           PPPP P  G
Sbjct: 101 PPPPAPEPG 109

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 68.0 bits (166), Expect = 2e-11
 Identities = 38/119 (31%), Positives = 43/119 (36%), Gaps = 26/119 (21%)

Query: 333  QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
              LPP +P            PP    P   +P P  PP   +P PP  PPP P PP AP 
Sbjct: 2898 FALPPDQPER----------PPQPQAPPPPQPQPQPPPPP-QPQPPPPPPPRPQPPLAPT 2946

Query: 393  PPPAPAPAPRAPPPPPKPGP-------------PPPPPPRGGPAPRPPPPMPSGSKVPR 438
              PA A  P    P P  G              P P P R   AP    P  +G  + R
Sbjct: 2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSR--EAPASSTPPLTGHSLSR 3003

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 39/136 (28%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 320 AVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 379
            V  T    +  G+   P    P    S+  G+P    PP           +SL P P S
Sbjct: 162 DVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS---PSDSSLPPAPSS 218

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 439
                PPP P     P+P P P APPPPP    PP    +  P      P P G      
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Query: 440 ---PLGQKHSSSSVGA 452
                 QKH+  ++ A
Sbjct: 279 DAIAKAQKHAKWAISA 294

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 67.2 bits (164), Expect = 3e-11
 Identities = 42/165 (25%), Positives = 49/165 (29%), Gaps = 13/165 (7%)

Query: 315 TASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPP---PGRAEPLPHEPPA 371
           TA+   V   A +        P    PP    +        +     P R  P P E  A
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP-EALA 434

Query: 372 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP----- 426
           + R     GP   P P PAP   PA A  P A  P P        P R  PA  P     
Sbjct: 435 AARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADD 494

Query: 427 -PPP---MPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
            PPP   +P     P P       +  V       A A       
Sbjct: 495 DPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 67.3 bits (164), Expect = 4e-11
 Identities = 65/339 (19%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 146  PQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAP----VHARATAPATSPTQDA-- 199
            P P  P  +            P     P   P   PAP       RA     +    +  
Sbjct: 2624 PDPPPPSPSPA---ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPP 2680

Query: 200  -KPRPRTPPTPFFPSVSSSSPTVGDNS------TTNSGSGTSARADDKTNHHNTVIIAVV 252
             +PR R          S + P     +         S +               +  A  
Sbjct: 2681 QRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA 2740

Query: 253  VTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKF 312
              A     A        +R   T             +      +  +  S  E  +    
Sbjct: 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800

Query: 313  DGTASFGAVGGTAKSFNENGQVLP-PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHE--- 368
                +       A +        P    PPP    ++ Q   P  PP      LP     
Sbjct: 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPP----TSAQPTAPPPPPGPPPPSLPLGGSV 2856

Query: 369  -PPASLRPHPPSGPPPPPPPPPA-------PRPPPAPAPAPRA-PPPPPKPGPPPPPPPR 419
             P   +R  PPS  P   P  PA        RP  + +    A PP  P+  P P  PP 
Sbjct: 2857 APGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP 2916

Query: 420  GGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDA 458
              P P+PPPP       P PP  Q   + +      G+ 
Sbjct: 2917 PQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955

Length = 3151

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 61.9 bits (150), Expect = 4e-11
 Identities = 52/115 (45%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP-----PPPPPPPPA---P 391
           PPP   G T    PP  P      P P  P  +  P PP  P     PPPPP P A   P
Sbjct: 26  PPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIP 85

Query: 392 RPPPAPAPAPRAPPPPPKPG----PPPPPPPRGGPAPRPPPPMPSGSKVPRPPLG 442
            PPP P  A   PPPPP PG    PPPPP P G   P PPPP P    +P PP G
Sbjct: 86  PPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPPPG 140

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 66.5 bits (162), Expect = 7e-11
 Identities = 68/302 (22%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 172  TPAPAPAVAPAPVHARATAPATSPTQDAKPR-PRTPPTPFFPSVSSSSPTVGDNSTTNSG 230
             P PAP  +   V +RA  P  +P Q A+PR P             S      ++     
Sbjct: 2570 PPRPAPRPSEPAVTSRARRP-DAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPP 2628

Query: 231  SGTSARADDKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRT--GSGGRQNDERPLL 288
               S  A++   H    +                      R  R    S   Q   R   
Sbjct: 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAA 2688

Query: 289  SLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGST 348
              +     VGS  S  +          A    V  T            P  P   R  S 
Sbjct: 2689 RPT-----VGSLTSLADPPPPPPTPEPAPHALVSATPL----------PPGPAAARQASP 2733

Query: 349  LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPP--------PPPPPAPRPPPAPA-- 398
                 P  P        P  P    RP   +GPP P         PP    RP  A    
Sbjct: 2734 ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSE 2793

Query: 399  -----PAPRAPPPPPKPGPPPPP--PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVG 451
                 P+P  P  PP     P    PP   PA   PPP  +    P PP G    S  +G
Sbjct: 2794 SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853

Query: 452  AG 453
              
Sbjct: 2854 GS 2855

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 65.3 bits (159), Expect = 1e-10
 Identities = 74/329 (22%), Positives = 96/329 (29%), Gaps = 40/329 (12%)

Query: 147  QPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTP 206
            +PDAP Q+     P      P   + P+P P    AP      +P+ +  +     P T 
Sbjct: 2588 RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAP-DPPPPSPSPAANEPDPHPPPTV 2646

Query: 207  PTPFFPSVSSSSPTVG-DNSTTNSGSGTSARADDKTNHHNTVIIAVVVTAAVTFVAAALL 265
            P P  P    +   V         G    A +  +          V    +         
Sbjct: 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTS--------- 2697

Query: 266  FLCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTA 325
                             +  P   +S +    G   +             AS       A
Sbjct: 2698 ------LADPPPPPPTPEPAPHALVSATPLPPGPAAA-----------RQASPALPAAPA 2740

Query: 326  KSFNENGQVLPPLKPPPGRVGST---LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPP 382
                  G   P     P R  +T       PP  P  G    L     ASL     S P 
Sbjct: 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800

Query: 383  PP-PPPPPAPRPPPAPA-PAPRAP----PPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
            P  P  PPA    PA A P   +P    PPP    P  PPPP   P P PP     GS  
Sbjct: 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP---PGPPPPSLPLGGSVA 2857

Query: 437  PRPPLGQKHSSSSVGAGAEGDANAPKTKL 465
            P   + ++  S S  A     A  P  +L
Sbjct: 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.9 bits (158), Expect = 1e-10
 Identities = 30/125 (24%), Positives = 36/125 (28%), Gaps = 4/125 (3%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA- 398
           P         Q  P    P   A P P  PPA+    P +            R  PAP  
Sbjct: 374 PATAAAAPVAQPAPAAAAPAA-AAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 399 --PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 456
              A +A    P   P P P P   PA    P       V          ++   A A  
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492

Query: 457 DANAP 461
           D + P
Sbjct: 493 DDDPP 497

Length = 700

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 65.7 bits (161), Expect = 1e-10
 Identities = 21/93 (22%), Positives = 23/93 (24%), Gaps = 5/93 (5%)

Query: 349 LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 408
                P       A        A           P    P AP P P  A AP APP P 
Sbjct: 33  FADYGPGSTAAPTAAAAAAAAAA-----SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA 87

Query: 409 KPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
                   P     A     P  +  +    PL
Sbjct: 88  AAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 65.2 bits (159), Expect = 1e-10
 Identities = 56/344 (16%), Positives = 90/344 (26%), Gaps = 26/344 (7%)

Query: 146 PQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRT 205
           P P             + +      ++PA   +  P    +    P T P     P P  
Sbjct: 73  PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAP 132

Query: 206 PPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDKTNHHNTVIIAVVVTAAVTFVAAALL 265
             +     V S  P    +      S  +  +D  ++    + ++     A    +    
Sbjct: 133 DLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAE 192

Query: 266 F-LCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGT 324
                     +    R       +S S S  +   G S  +       D ++S  +  G 
Sbjct: 193 PPPSTPPAAASPRPPR---RSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGW 249

Query: 325 AKSFNENGQVLPPLKPPPGRV--GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPP 382
               NE     P     P R+   S   G      P   +       P+     P SGP 
Sbjct: 250 GPE-NECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPA 308

Query: 383 PPPPP-------------------PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 423
           P  P                      + R          +  P P   PPP  P      
Sbjct: 309 PSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKR 368

Query: 424 PRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
           PRP     S +     P  ++  ++  G     DA       +P
Sbjct: 369 PRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRP 412

Length = 1352

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 50/111 (45%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPP-----SGPPPPPPPPPAPRPP 394
           PPP   G  +   PPL        P P      + P PP     + PPPPP P  A  PP
Sbjct: 3   PPPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPP 62

Query: 395 PAPAPAPRA-PPPPPKPG----PPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
           P P P   A PPPPP PG    PPPPP P G   P PPPP+P G+ VP PP
Sbjct: 63  PPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPP 113

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 64.5 bits (158), Expect = 2e-10
 Identities = 20/88 (22%), Positives = 23/88 (26%), Gaps = 5/88 (5%)

Query: 341 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 400
           P      T             A     + PA+  P PP+   P  PP PA     A APA
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 401 PRAPPPPPKPGPPPPPPP-----RGGPA 423
                                  RG  A
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 34/113 (30%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 337 PLKPPPGRVGSTLQGMPPL------KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 390
           PL P PG        MP        +PP G AE +     A+    P +  PP  P  P 
Sbjct: 42  PLVPKPGDRDEP-DMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPE 100

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 443
           P P   P P P    P PKP P         P P P P +         P G+
Sbjct: 101 PAPVEPPKPKPV-EKPKPKPKPQQKVEAPPAPKPEPKPVVEE----KAAPTGK 148

Length = 226

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 25/120 (20%), Positives = 33/120 (27%), Gaps = 6/120 (5%)

Query: 348 TLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 407
            L  +   KP        P E     RP   +    P     A   P A   A  + P  
Sbjct: 357 VLLRLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAA 416

Query: 408 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
           P    PP P      A     P  + + V   P      +    A  E  A   +   +P
Sbjct: 417 PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP------APPAQAAPETVAIPVRVAPEP 470

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 27/114 (23%), Positives = 33/114 (28%), Gaps = 9/114 (7%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
           P    P           PA     P +    P  PP A  P P  APA  AP   P   P
Sbjct: 384 PEAAAPAAAPVAQAAAAPAPAAA-PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442

Query: 413 -----PPPPPPRGGPAPRPPPPM---PSGSKVPRPPLGQKHSSSSVGAGAEGDA 458
                 P PP +  P     P             P      +++ +    EGD 
Sbjct: 443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 39/151 (25%), Positives = 52/151 (34%), Gaps = 15/151 (9%)

Query: 312 FDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPA 371
            +  A     G  A    E     PP  PPPG         P  + P   +   P    +
Sbjct: 48  AELAAVTVVAGAAACDRFE-----PPTGPPPG---------PGTEAPANESRSTPTWSLS 93

Query: 372 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
           +L P  P+    P PP P+   PP P P P +PPP P P       P G P P P    P
Sbjct: 94  TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153

Query: 432 -SGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
            +G+           S  +    +  +  A 
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETAR 184

Length = 1352

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 38/141 (26%), Positives = 46/141 (32%), Gaps = 26/141 (18%)

Query: 331 NGQVLPPLKPP---------PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP 381
             QVLP   PP         P          P   P   + +     P  +    P    
Sbjct: 176 PQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQ 235

Query: 382 PPPPPPP------------PAPRPPPAPA-----PAPRAPPPPPKPGPPPPPPPRGGPAP 424
            P  PPP              P PP  P      P P+A PPP     P P  P+G  AP
Sbjct: 236 LPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAP 295

Query: 425 RPPPPMPSGSKVPRPPLGQKH 445
            PPP  P    + + P GQ+ 
Sbjct: 296 LPPPQQPQLLPLVQQPQGQQR 316

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 63.4 bits (155), Expect = 5e-10
 Identities = 19/81 (23%), Positives = 21/81 (25%)

Query: 370 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
           P S      +              P A APA  AP PP    P  PP P    A    P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 430 MPSGSKVPRPPLGQKHSSSSV 450
            P  +     P          
Sbjct: 98  APPAAAAAAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.7 bits (153), Expect = 6e-10
 Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPH--PPSGPPPPPPPPPAPRPPPAP 397
            P G   +     P   PP G+A+    +PP + +    P      P P PP P  PP P
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP 751

Query: 398 APAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
           A AP  PPPPP P P   P     P+P       
Sbjct: 752 AGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 61.2 bits (149), Expect = 6e-10
 Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 1/101 (0%)

Query: 358 PPGRAEPLPHEPPASLRPHPPSGPPPP-PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
               A   P +PP+S    P    PP  P  P     PPAP+      PPP    P  P 
Sbjct: 176 DADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPS 235

Query: 417 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGD 457
           PP G  AP PPP           P     S++    G    
Sbjct: 236 PPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.1 bits (151), Expect = 8e-10
 Identities = 27/161 (16%), Positives = 38/161 (23%), Gaps = 12/161 (7%)

Query: 325 AKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPP 384
           A+   +         P         Q       P   A   P    +S    P +   P 
Sbjct: 360 AQLTQKGDDASGGRGPKQHIKPVFTQPAAA-PQPSAAAAASPSPSQSSAAAQPSA---PQ 415

Query: 385 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
               PA  PP      P A P  P    P    P      +  P     S  P      +
Sbjct: 416 SATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQ 475

Query: 445 HSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQ 485
             +      A G+     T  +   +       D    W +
Sbjct: 476 EKA----EQATGNIKEAPTGTQKEIFT----EEDLQYYWQE 508

Length = 614

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 62.6 bits (152), Expect = 9e-10
 Identities = 35/143 (24%), Positives = 37/143 (25%), Gaps = 13/143 (9%)

Query: 336  PPLKPPPG---RVGSTLQGMPPLKPPPGRAEPLPHEPPASL--RPHPPSGPPPPPPPPPA 390
             P  PPP             PP  PPP R    P     S   R            PP  
Sbjct: 2623 APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQR 2682

Query: 391  PRPPPAPAPA------PRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
            PR   A             PPPPP P P P       P   PP P  +    P  P    
Sbjct: 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPL--PPGPAAARQASPALPAAPA 2740

Query: 445  HSSSSVGAGAEGDANAPKTKLKP 467
              +   G    G    P      
Sbjct: 2741 PPAVPAGPATPGGPARPARPPTT 2763

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 61.4 bits (150), Expect = 2e-09
 Identities = 18/79 (22%), Positives = 19/79 (24%)

Query: 344 RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 403
             GST             A      P A     P   PP    P   P+P  A A A   
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 404 PPPPPKPGPPPPPPPRGGP 422
             PP       P       
Sbjct: 97  AAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.3 bits (149), Expect = 2e-09
 Identities = 27/129 (20%), Positives = 33/129 (25%), Gaps = 9/129 (6%)

Query: 322 GGTAKSFNENGQVLPPLKPPPG--RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 379
              A +  E      P    P    V        P   P   A       P +  P  P 
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPA--APPAAAPPAPV 426

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP-----PPPRGGPAPRPPPPMPSGS 434
             P    P  AP   PA      APP    P          P P    A   P   P+ +
Sbjct: 427 AAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAA 486

Query: 435 KVPRPPLGQ 443
           ++     G 
Sbjct: 487 RLTPTEEGD 495

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 24/99 (24%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           P P  A+P    P        PS  P        P   P    A   P PP    PP P 
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423

Query: 417 PPRGGPA-PRPPPPMPSGSKVPRPPLGQKHSSSSVGAGA 454
            P   P   R   P+    K   P   ++   + +  G 
Sbjct: 424 TPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGD 462

Length = 585

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 35/77 (45%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 374 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRA-PPPPPKPGPPPPPPPRGGPA-----PRPP 427
           R    S  PP  P PP P PP +P  +P   PP PP PG  PPP    GPA     PR  
Sbjct: 3   RARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGC 62

Query: 428 PP--MPSGSKVPRPPLG 442
           P     S S  PRPPLG
Sbjct: 63  PAGVTFSSSAPPRPPLG 79

Length = 318

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 23/96 (23%), Positives = 29/96 (30%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 413
                       P E        P   P   P  P  P PP  P+    +  PP      
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQ 220

Query: 414 PPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 449
              PP    +P  P P P  +  P PP+ Q    S+
Sbjct: 221 SDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLST 256

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.1 bits (145), Expect = 4e-09
 Identities = 42/122 (34%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP--- 413
            P G A   P    A+  P  P    P    P A   P + APA  AP   P P  P   
Sbjct: 380 APSGSAAEGPASGGAATIP-TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 414 -PPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDK 472
            PP PPR G  PRP P MP  S VP  P     +S +     +    A  T   P  WD 
Sbjct: 439 APPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRTWDG 498

Query: 473 VL 474
            L
Sbjct: 499 FL 500

Length = 624

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.3 bits (144), Expect = 6e-09
 Identities = 26/120 (21%), Positives = 31/120 (25%), Gaps = 7/120 (5%)

Query: 346 GSTLQGMPPLKPP--PGRAEPLPHEPPASLRPHPPSGPPPPPPP--PPAPRPPPAPAPAP 401
            +        K P  P  A P         +      P   P         PP A  PAP
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVA---QAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 402 RAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
            A P    P   P   P        PP   +   V  P       + +  A A   A A 
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485

Length = 618

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 59.7 bits (144), Expect = 7e-09
 Identities = 33/97 (34%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
           M P++  PG  +P P  P     P  P G    P        PPA AP  RA PP   PG
Sbjct: 684 MLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPG-RARPPAAAPG 742

Query: 412 PPPPP--------PPRGGPAPRPPPPMPSGSKVPRPP 440
              PP        PP   P    PP    G+  P+PP
Sbjct: 743 RARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPP 779

Length = 991

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.1 bits (143), Expect = 8e-09
 Identities = 28/97 (28%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP-AP 424
           P   P   +P   +  P P  P PAP   P  A A   PP  P      PPP    P AP
Sbjct: 362 PVPAPQPAKPTAAA--PSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAP 419

Query: 425 RPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
             P    S  K+ R       ++  V    +    AP
Sbjct: 420 PVPHTPESAPKLTR-------AAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.4 bits (142), Expect = 2e-08
 Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 382 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
           P     P A     A A +  A  P  K    P P P    AP  PP  P+ +       
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-PAAAAAAAAAP 96

Query: 442 GQKHSSSSVGAGAEGDANAPKTKLK 466
               ++++  A A        T L+
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTPLR 121

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 58.3 bits (141), Expect = 2e-08
 Identities = 59/313 (18%), Positives = 83/313 (26%), Gaps = 28/313 (8%)

Query: 146 PQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRT 205
                        +    A     A   +     A AP    A  P ++P   A PRP  
Sbjct: 149 AASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR 208

Query: 206 PPTPFFPSVSSSSPTVGDN-------------STTNSGSGTSARADDKTNHHNTVIIAVV 252
             +P   S SS +P  G +             S+ +SG G     +        + +   
Sbjct: 209 RSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTR 268

Query: 253 VTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKF 312
           +  A  +   +      S    +    R     P         S                
Sbjct: 269 IWEASGWNGPSSRPGPASS--SSSPRERSPSPSP---------SSPGSGPAPSSPRASSS 317

Query: 313 DGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPAS 372
             ++   +   T+ S   +        P P R  S  +  PP  P   R  P P   P+S
Sbjct: 318 SSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS 377

Query: 373 LRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
                            A R     A   R P   P+P P       G    R P   PS
Sbjct: 378 PAASAGRPTRRRARAAVAGRARRRDAT-GRFPAGRPRPSPLDAGAASGAFYARYPLLTPS 436

Query: 433 GS---KVPRPPLG 442
           G      P PP G
Sbjct: 437 GEPWPGSPPPPPG 449

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 58.3 bits (141), Expect = 2e-08
 Identities = 31/139 (22%), Positives = 40/139 (28%), Gaps = 10/139 (7%)

Query: 328 FNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP 387
               GQ++                      PP    P    P      +     P     
Sbjct: 37  SGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPP---GPGTEAPANESRSTPTWSLS 93

Query: 388 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS-----GSKVPRPPLG 442
             AP  P     +P  P P     PPP PPP   P P P P +       GS  P P   
Sbjct: 94  TLAPASPA-REGSPTPPGPSSPDPPPPTPPP-ASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

Query: 443 QKHSSSSVGAGAEGDANAP 461
              + +S  A A   A++ 
Sbjct: 152 PPAAGASPAAVASDAASSR 170

Length = 1352

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 58.2 bits (141), Expect = 2e-08
 Identities = 35/121 (28%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 328 FNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEP--LPHEPPASLRPHPPSGPPPPP 385
             +  Q     +PP        Q +P   PP   A P   P E P      P   P    
Sbjct: 163 LQQRQQAPQLPQPPQ-------QVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQ 215

Query: 386 PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR-PPPPMPSGSKVPRPPLGQK 444
           P    P P  APA  P  PP  P+  PP   P   G + + PPPP     +  +PP  Q 
Sbjct: 216 PQQFLPAPSQAPAQPP-LPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274

Query: 445 H 445
            
Sbjct: 275 Q 275

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 58.3 bits (141), Expect = 2e-08
 Identities = 28/116 (24%), Positives = 31/116 (26%), Gaps = 6/116 (5%)

Query: 334 VLPPLKPPPGRVGSTLQGMPP---LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 390
           V     P P        G P      P    A        A   P  P+        P A
Sbjct: 638 VFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQA 697

Query: 391 PRPPPAPA---PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 443
           PRP   P      P  P  P   GP P           PP P P G++       Q
Sbjct: 698 PRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAENQ 753

Length = 753

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 30/78 (38%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           P  PPP                P  A P P  PPA+     P  P   PPPPPA   P A
Sbjct: 43  PPPPPP----------STAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPA--DPNA 90

Query: 397 PAPAPRAPPPPPKPGPPP 414
           P P P  P  PP P P P
Sbjct: 91  PPPPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 57.6 bits (139), Expect = 3e-08
 Identities = 48/174 (27%), Positives = 56/174 (32%), Gaps = 38/174 (21%)

Query: 316  ASFGAVGGTAKSFNENGQVLPPLKPPPGRVGST-LQGMPPLKPPPGR------------- 361
            A F    G A      G   P   P P R+    L   P  +P   R             
Sbjct: 2486 ARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELAS 2545

Query: 362  ---AEPLPHEPPASLRPHPP-SGPPPPPPPPPA----------PRPPPAPA--PAPRAPP 405
                +P P  PPA+    P  S PPP P P P+          P  PP  A   AP    
Sbjct: 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDR 2605

Query: 406  PPPKPGPPPPPPPRGGPAPRPPPPMPS--------GSKVPRPPLGQKHSSSSVG 451
              P+   PP P P    AP PPPP PS              PP  +     + G
Sbjct: 2606 GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPG 2659

Length = 3151

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP-PPAPAPAPRAPPPPPKPGPPPP 415
           P P  A      P A   P P + PP PP  P  P    PAPAPAP A   PP     P 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 416 PPPRGGPA 423
                G  
Sbjct: 442 AAASAGDR 449

Length = 576

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 57.3 bits (138), Expect = 4e-08
 Identities = 35/132 (26%), Positives = 38/132 (28%), Gaps = 24/132 (18%)

Query: 335  LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
            LPP  PP           P    PP R  P P EP  + R   P  PP    P       
Sbjct: 2555 LPPAAPPAA---------PDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPR------ 2599

Query: 395  PAPAPAPRAPP-PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAG 453
                 AP      P  P PP P PP       P PP PS S     P      +      
Sbjct: 2600 -----APVDDRGDPRGPAPPSPLPP---DTHAPDPPPPSPSPAANEPDPHPPPTVPPPER 2651

Query: 454  AEGDANAPKTKL 465
               D    +   
Sbjct: 2652 PRDDPAPGRVSR 2663

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.7 bits (137), Expect = 4e-08
 Identities = 25/97 (25%), Positives = 30/97 (30%), Gaps = 4/97 (4%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
           P P     T     P++P P  +        A++ P  P      PPP P   P P   P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP---PRPVAPP 420

Query: 400 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
            P  P   P        P    P   PP P     K 
Sbjct: 421 VPHTPESAP-KLTRAAIPVDEKPKYTPPAPPKEEEKA 456

Length = 585

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.4 bits (136), Expect = 5e-08
 Identities = 33/141 (23%), Positives = 44/141 (31%), Gaps = 10/141 (7%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP- 395
           P +  P             + P G   P P    A      P+   P P    A   P  
Sbjct: 423 PARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPAR 482

Query: 396 -----APAPAPRAPPP----PPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHS 446
                APAPA   PPP    PP+   P P  P   PA      +P  +        +  +
Sbjct: 483 AAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLA 542

Query: 447 SSSVGAGAEGDANAPKTKLKP 467
            +   A A   A A +  + P
Sbjct: 543 PAPAAAPAPRAAAATEPVVAP 563

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 56.7 bits (137), Expect = 5e-08
 Identities = 36/107 (33%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPP---SGPPPPPPPPPAPR 392
           P   P         +     K  P  A           RP PP   + P    PP  A  
Sbjct: 835 PARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA 894

Query: 393 PPPAPAPAPRAPPPPPKP-GPPPP--PPPRGG----PAPRPPPPMPS 432
            PPA APAPR  P P    GP PP  P PRGG    P      P PS
Sbjct: 895 APPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPS 941

Length = 1352

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 28/78 (35%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 369 PPASLRPHPPSGPPPPP----PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
             A     PP G P PP    PPP +      P   P APPP P+P  P P  P    AP
Sbjct: 33  ESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAP 92

Query: 425 RPPPPMPSGSKVPRPPLG 442
             P       K P PP  
Sbjct: 93  PAPA-----RKPPLPPPR 105

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP-PPPMPSGSKVPRP 439
           PP    PPP P   P P P P   PP   P   P P P+  P P+P P P+    + P+ 
Sbjct: 60  PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKR 119

Query: 440 PL 441
            +
Sbjct: 120 EV 121

Length = 246

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 33/138 (23%), Positives = 40/138 (28%), Gaps = 16/138 (11%)

Query: 337 PLKPPPGRVGSTLQGM----PPLKPPPGRAEPLPHE-------PPASLRPHPPSGPPPPP 385
           P + PP +V S  Q       P  PPP + +P P +        P    P       PP 
Sbjct: 99  PSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQ 158

Query: 386 PPPPAPRPPPAPAPAPRAPP--PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 443
            P     PPP    AP+     P   P  P   PP     P P            PP  Q
Sbjct: 159 QPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPN---EPLPSSMAMQPPYSGAPPSQQ 215

Query: 444 KHSSSSVGAGAEGDANAP 461
            +          G     
Sbjct: 216 FYGPPQPSPYMYGGPGGR 233

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.9 bits (137), Expect = 6e-08
 Identities = 33/110 (30%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 332 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
           G+  P     P R     +       P  R  P   +      P P S P P P P PA 
Sbjct: 371 GRHHPKRASLPTR---KRRSARHAATPFARG-PGGDDQTRPAAPVPASVPTPAPTPVPAS 426

Query: 392 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
            PPP   P P     P     P PPP R  PAP   P         R  L
Sbjct: 427 APPPPATPLP--SAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKAL 474

Length = 3151

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 41/98 (41%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 332 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
              +PP  P PG  G     +PP  P PG A   P  PP       P  PPP P  P  P
Sbjct: 69  ATAIPPPPPLPGAAG-----IPPPPPLPGGAGIPPPPPPLPGGAAVPP-PPPLPGGPGVP 122

Query: 392 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
            PPP    AP  PPPPP  G PPPPP   G    P  P
Sbjct: 123 PPPPPFPGAPGIPPPPPGMGSPPPPPFGFGVPAAPVLP 160

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 56.2 bits (135), Expect = 6e-08
 Identities = 18/59 (30%), Positives = 18/59 (30%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 426
             PA      PS     P P PA R P A    P   P P K   P    P       P
Sbjct: 208 AEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 56.2 bits (135), Expect = 6e-08
 Identities = 31/109 (28%), Positives = 36/109 (33%), Gaps = 6/109 (5%)

Query: 336 PPLKPPP--GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
           PP   PP    +  +         PP   +     P AS   HP SG    PP  P  + 
Sbjct: 398 PPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKAS--THPHSGLHSGPPQSPFAQH 455

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP--PPMPSGSKVPRPP 440
           P      P   PPP  P   P  PPR     +PP      SG      P
Sbjct: 456 PFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGP 504

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 26/78 (33%), Positives = 29/78 (37%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 413
           PL P PG+    P +      P P   P  P P  P     P     P  P PP  P PP
Sbjct: 72  PLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPP 131

Query: 414 PPPPPRGGPAPRPPPPMP 431
            PP     P P   P +P
Sbjct: 132 LPPMFPMQPLPPLLPDLP 149

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 55.1 bits (133), Expect = 7e-08
 Identities = 26/112 (23%), Positives = 30/112 (26%), Gaps = 12/112 (10%)

Query: 350 QGMPPLKPPPG-----RAEPLPHEPPASLRPHPPSGPPPPPPPPP-----APRPPPAPA- 398
           +G  P   PP       A+        S            P  PP      P  P  P  
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPED 203

Query: 399 -PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 449
             +P     PP P       P   P     P  P G   P PP  Q+    S
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLS 255

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           P     +  P        P PP    PPP       PPP+   AP   P PP PGP  PP
Sbjct: 32  PESAHPDDPPPVGD----PRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPP 87

Query: 417 PPRGGPAPRPPPPMPS 432
            P   PAP   PP+P 
Sbjct: 88  SPLAPPAPARKPPLPP 103

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 363 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 422
           E LP  PP +    P     PPPP    P  PPA  PAP AP   P P P  PPP +   
Sbjct: 139 EALPQPPPPA----PVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPK 194

Query: 423 APRPP 427
           +  PP
Sbjct: 195 SSHPP 199

Length = 274

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 55.7 bits (134), Expect = 1e-07
 Identities = 47/188 (25%), Positives = 54/188 (28%), Gaps = 71/188 (37%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGR----------------------AEPLPHE----- 368
               PP G  G+ L G P   P P                          PLP       
Sbjct: 289 GAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYP 348

Query: 369 ------------PPASL------RPHPPSGPPP-------------------------PP 385
                       PP+SL      R HP     P                         P 
Sbjct: 349 LGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPA 408

Query: 386 PPPPAPRPPPAPAPAPR-APPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
            P PA  P PAP P P  APPPP  P P   P    GPAP P    P+ +  P P     
Sbjct: 409 APVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDD 468

Query: 445 HSSSSVGA 452
            +  ++ A
Sbjct: 469 ATRKALDA 476

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 55.8 bits (134), Expect = 1e-07
 Identities = 27/103 (26%), Positives = 30/103 (29%), Gaps = 7/103 (6%)

Query: 342 PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP 401
           P +V  T       +      +P P      L      G   PPP  P P  PPA  P  
Sbjct: 654 PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGR 713

Query: 402 RAPP-------PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
              P        PP   P    PP   P    PP    G   P
Sbjct: 714 AQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756

Length = 991

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 52/127 (40%), Positives = 57/127 (44%), Gaps = 20/127 (15%)

Query: 332 GQVLPPLKPPPGRVG-------STLQGMPPLKPPPGRA--EPLPHEPPASLRPHPP---- 378
           G  +PP  P PG            + G+PP  P PG     P P  P A+  P PP    
Sbjct: 33  GTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPG 92

Query: 379 -SGPPPPPPPPPA----PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 433
            +G PPPPPP P     P PPP P      PPPPP PG P  PPP   P    PPP P G
Sbjct: 93  GAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPP--PGMGSPPPPPFG 150

Query: 434 SKVPRPP 440
             VP  P
Sbjct: 151 FGVPAAP 157

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 28/110 (25%), Positives = 35/110 (31%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           PPL P   +    LQ             P P  P    +P  P   PPP   P      P
Sbjct: 230 PPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLP 289

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 445
               AP  PP  P+  P    P      P+    +   S+  R  L Q+ 
Sbjct: 290 QGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEE 339

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 54.9 bits (132), Expect = 1e-07
 Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRA--EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
              PPP               PPG +   P     P +  P     P  P P P  P  P
Sbjct: 186 IQPPPPS---------SLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAP 236

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPP 418
           PA  PAP  PP      PPP PPP
Sbjct: 237 PASIPAPPIPPVIQYVAPPPVPPP 260

Length = 582

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.9 bits (132), Expect = 2e-07
 Identities = 31/114 (27%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 320  AVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHP-P 378
            AV  + +SF            P        Q  PP  P P    P P  P   L P   P
Sbjct: 2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

Query: 379  SGPPPPPPPPPAPR-----PPPAPAPAPRAPPP-PPKPGP-PPPPPPRGGPAPR 425
            +G   P    P P      P     P  R P P P +  P    PP  G    R
Sbjct: 2950 AGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.6 bits (132), Expect = 2e-07
 Identities = 20/106 (18%), Positives = 24/106 (22%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
            P       P  P +S  P   + P  P  P     P PA A A  A            P
Sbjct: 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAP 650

Query: 417 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPK 462
                    P           +       +     A A   A A  
Sbjct: 651 EHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696

Length = 824

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 55.1 bits (132), Expect = 2e-07
 Identities = 28/94 (29%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP----- 406
           M P    P    P    P  + RP   +G   PP   P    PPA AP    PP      
Sbjct: 694 MQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 753

Query: 407 --PPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 438
             PP   P    PP   P    P P P     P+
Sbjct: 754 ARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQ 787

Length = 991

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.9 bits (132), Expect = 2e-07
 Identities = 35/143 (24%), Positives = 42/143 (29%), Gaps = 14/143 (9%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLR---PHPPSGPPPPP-----PP 387
           P   P        +   P  + P   A     +  A      P P   P   P     P 
Sbjct: 406 PAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPA 465

Query: 388 PPAPRPPPAPA---PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
              PRP  A A   PA  AP   P P    PPP    P   P    P+ ++    P G  
Sbjct: 466 AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP---PEFASPAPAQPDAAPAGWV 522

Query: 445 HSSSSVGAGAEGDANAPKTKLKP 467
             S    A A+ D         P
Sbjct: 523 AESIPDPATADPDDAFETLAPAP 545

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.5 bits (131), Expect = 2e-07
 Identities = 24/95 (25%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 369 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 428
            PA+    P + P P    P A  P PA  PA  A  P               PA R P 
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAA---AAAARAVAAAPARRSPA 429

Query: 429 PMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKT 463
           P    +       G   + +   A A   A A + 
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 55.2 bits (133), Expect = 2e-07
 Identities = 31/113 (27%), Positives = 31/113 (27%), Gaps = 14/113 (12%)

Query: 347 STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA------PRPPPAPAPA 400
            T  G      P          PPA       S P               PRPP   A  
Sbjct: 824 HTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARP 883

Query: 401 PRAPPPPPKPGPPPPPPPRGGPAPRPPP---PMPSGSKVP-----RPPLGQKH 445
             A PP      PP   P   P P P     PMP G   P     R P G  H
Sbjct: 884 GAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLH 936

Length = 1352

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 20/66 (30%), Positives = 20/66 (30%)

Query: 361 RAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 420
           R  P P               PPP   PP P   PA   A R  P P  P    PP    
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438

Query: 421 GPAPRP 426
            PA   
Sbjct: 439 DPAAAA 444

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 21/72 (29%), Positives = 23/72 (31%)

Query: 362 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 421
               P  P A+     P+ P  PPP    P PP APA    A P P    P    PP   
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARS 437

Query: 422 PAPRPPPPMPSG 433
             P         
Sbjct: 438 ADPAAAASAGDR 449

Length = 576

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 28/67 (41%), Positives = 32/67 (47%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
           PP+  P       P    A     PPS P  PPP P  P P PA  P+P APP P +  P
Sbjct: 41  PPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPP 100

Query: 413 PPPPPPR 419
            PPP P+
Sbjct: 101 LPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional

 Score = 54.2 bits (130), Expect = 2e-07
 Identities = 38/140 (27%), Positives = 44/140 (31%), Gaps = 33/140 (23%)

Query: 328 FNENGQVLPP-------LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSG 380
           F  +G V+PP        +PPP   G +         PPG   P     P  +    P  
Sbjct: 247 FMRHGGVVPPYFEESKGYEPPPAPSGGS-------PAPPGDDRPEAKPEPGPVEDGAPGR 299

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP-------PPPMPSG 433
                   P P           A    PKPGPP P P    P   P       PPP P+ 
Sbjct: 300 ETGGEGEGPEPAGRDG------AAGGEPKPGPPRPAPDADRPEGWPSLEAITFPPPTPAT 353

Query: 434 SKVPRPPLGQKHSSSSVGAG 453
             VPR           VG G
Sbjct: 354 PAVPR------ARPVIVGTG 367

Length = 416

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 23/98 (23%), Positives = 27/98 (27%), Gaps = 1/98 (1%)

Query: 332 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
            Q  PP      R          + P        P   P     + P    P   P   P
Sbjct: 90  HQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVS-P 148

Query: 392 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
           +  PAP P   AP P  +   P  P     P P   P 
Sbjct: 149 QVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPA 186

Length = 333

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 54.2 bits (130), Expect = 2e-07
 Identities = 31/116 (26%), Positives = 34/116 (29%), Gaps = 4/116 (3%)

Query: 314 GTASFGAVGGTAKSFNENGQVL----PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEP 369
           G A+F A G  A      G       P L     R+G     +P    P  R    P   
Sbjct: 162 GLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETT 221

Query: 370 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
           P       P     P P      P     P     P PP PG    PP    PAP 
Sbjct: 222 PTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPE 277

Length = 401

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPAPRPP--PAPAPAPRAPPPPPKPGPPPPPPPRGGPA 423
           P  PPA   P  P     P P  P P P   PA  PAP A  P P   PPP  PP+   A
Sbjct: 81  PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRA 140

Query: 424 P 424
           P
Sbjct: 141 P 141

Length = 141

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 346 GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 405
              L     L+ P    +P P EPP   +P PP+ P  PP P P P+P   P P  +   
Sbjct: 40  AVFLLAAKVLEAPTEEPQPEP-EPPEE-QPKPPTEPETPPEPTP-PKPKEKPKPEKKPKK 96

Query: 406 PPPKPGPPPPPPPRGGPAPRP-PPPMPSGSKVPRPPLGQKHSSSSVGA 452
           P PKP P P P P+  P P+P  PP  + +K P  P       S+  A
Sbjct: 97  PKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASA 144

Length = 244

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 24/73 (32%), Positives = 27/73 (36%)

Query: 361 RAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 420
           RA+P+  E      P       P P       PPP   P P  P PP     PPPP    
Sbjct: 36  RAQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGY 95

Query: 421 GPAPRPPPPMPSG 433
              P+ PPP   G
Sbjct: 96  MADPQEPPPPYPG 108

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.2 bits (131), Expect = 2e-07
 Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
              K PP   +  P   P    P P +  PPP PPPP   PP A   +  AP   P    
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPP---PPTATQASSNAPAQIPADSS 575

Query: 413 PPPPPPRGGPAPRPPPPMPS 432
           PPPP P     P P P   S
Sbjct: 576 PPPPIP---EEPTPSPTKDS 592

Length = 620

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.1 bits (130), Expect = 3e-07
 Identities = 30/110 (27%), Positives = 32/110 (29%), Gaps = 12/110 (10%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPA--SLRPHPPSGPPPPPPPPPA--- 390
            P    P  V +     P    P     P   +PP    L P   S  P  P   PA   
Sbjct: 463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

Query: 391 ----PRPPPAPAPAPR---APPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 433
               P P  A         AP P   P P          APRPP    SG
Sbjct: 523 AESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.1 bits (130), Expect = 3e-07
 Identities = 27/110 (24%), Positives = 31/110 (28%), Gaps = 6/110 (5%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLP--HEPPASLRPHPPSGPPPPPPPPPAPRP 393
           P   P      +        +P    A   P    P A+  P     PP    PP    P
Sbjct: 450 PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509

Query: 394 PPA---PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP-PMPSGSKVPRP 439
            PA    APA       P P    P       AP P   P P  +    P
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEP 559

Length = 700

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 35/76 (46%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 369 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA-PPPPPKPGP---PPPPPPRGGPAP 424
           PP    P     PPPPP P     PPP P P     PPPPP PG    PPPPP  G    
Sbjct: 1   PPPPPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGI 60

Query: 425 RPPPPMPSGSKVPRPP 440
            PPPP+P  + +P PP
Sbjct: 61  PPPPPLPGATAIPPPP 76

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 21/62 (33%), Positives = 22/62 (35%)

Query: 379 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 438
             PP      P P  P AP PA   P PP  P  P    P   PAP      P+ S  P 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 439 PP 440
             
Sbjct: 442 AA 443

Length = 576

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 370 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP----- 424
           PA L P     PPP P   P P P P P P   AP   PKP P P P P+  P P     
Sbjct: 55  PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVE 114

Query: 425 -------RPPPPMPSGSKVPRPPLGQKHSSSS 449
                  +P  P P+       P     S+++
Sbjct: 115 EQPKREVKPVEPRPASPFENTAPARPTSSTAT 146

Length = 246

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 54.2 bits (130), Expect = 3e-07
 Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 5/67 (7%)

Query: 371 ASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 430
           A+         P P      P P PA      AP PP     P          P    P+
Sbjct: 205 AAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAA-----PAAAAPV 259

Query: 431 PSGSKVP 437
            SG   P
Sbjct: 260 SSGDSGP 266

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 53.8 bits (129), Expect = 3e-07
 Identities = 16/55 (29%), Positives = 18/55 (32%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
              P PP P      PPPA   AP      P    P    P+     R   P P+
Sbjct: 16  QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70

Length = 475

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 357 PPPGRAEPLP--HEPPASLRPHPPS------GPPPPPPPPPAPRPP-PAPAPAPRAPPPP 407
           PP   A+P     +PP +  P   +       P P   P   P+P  P   P      P 
Sbjct: 94  PPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPA 153

Query: 408 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
           P+P    P P +    P  P   P    V  P 
Sbjct: 154 PQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPA 186

Length = 333

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 22/67 (32%), Positives = 25/67 (37%)

Query: 359 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
           PG  +      P        +G PPPPPP  A    P P  AP  PP  P+P  P     
Sbjct: 48  PGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTV 107

Query: 419 RGGPAPR 425
                PR
Sbjct: 108 TVAKDPR 114

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 30/78 (38%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 362 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 421
             P P  PP S   + P+    PPPP   P PPP P P       PP PG  PPP     
Sbjct: 56  PTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQNY-- 113

Query: 422 PAPRPPPPMPSGSKVPRP 439
             P PP P       PRP
Sbjct: 114 --PYPPGPGQD-PYAPRP 128

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 53.6 bits (129), Expect = 5e-07
 Identities = 48/292 (16%), Positives = 76/292 (26%), Gaps = 32/292 (10%)

Query: 170 ASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGD---NST 226
            +  A   AVA     +R  A   S  ++    P +PP    PS   ++ +      +S 
Sbjct: 153 PAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSP 212

Query: 227 TNSGSGTSARADDKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERP 286
            ++ + + A A  ++              A     A+      S     G G       P
Sbjct: 213 ISASASSPAPAPGRS--------------AADDAGASSSDSSSSESSGCGWGPENECPLP 258

Query: 287 LLSLSLSDYSVGSGN-SKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRV 345
             +       +   +         G    ++S      +    +          P   R 
Sbjct: 259 RPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS----GPAPSSPRA 314

Query: 346 GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAP--APAPRA 403
            S+             +        A   P P     P P  PP P  P +P   P P  
Sbjct: 315 SSSSSSSRESSSSSTSSSSESSRGAAV-SPGPSPSRSPSPSRPPPPADPSSPRKRPRPSR 373

Query: 404 PPPPPKPGPPPPPPPRGGPAPRP-------PPPMPSGSKVPRPPLGQKHSSS 448
            P  P      P   R   A              P+G   P P      S +
Sbjct: 374 APSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425

Length = 1352

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 20/65 (30%), Positives = 22/65 (33%)

Query: 341 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 400
           PP           P  PPP  A P+P   PA      P+  P PP     P     PA A
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAA 443

Query: 401 PRAPP 405
             A  
Sbjct: 444 ASAGD 448

Length = 576

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 53.0 bits (127), Expect = 5e-07
 Identities = 27/114 (23%), Positives = 30/114 (26%), Gaps = 7/114 (6%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASL-RPHPPSGPPPPPPPPPAPRPPP 395
            L  PP   GS      P  P        P   PA +  P  P   P     P     P 
Sbjct: 171 TLAAPPLGEGSADGSCDPALPLSA-----PRLGPADVFVPATPRPTPRTTASPETTPTPS 225

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAP-RPPPPMPSGSKVPRPPLGQKHSSS 448
                P    P P      P       A   P PP P G + P         +S
Sbjct: 226 TTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEAS 279

Length = 401

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 22/93 (23%), Positives = 26/93 (27%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
              + PP    P P E P   +      P P P P P P+  P P P         K   
Sbjct: 71  TEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPA 130

Query: 413 PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 445
            P  P R   A          S      L +  
Sbjct: 131 APNQPARPPSAASASGAATGPSASYLSGLRRAI 163

Length = 244

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 27/129 (20%), Positives = 32/129 (24%), Gaps = 7/129 (5%)

Query: 336 PPLKPPPGRVGSTLQG---MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
           PP  P P                 P    A              PP+       P     
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR----PPLGQKHSSS 448
           P  A  PAPRA  P        P       A R   P  +    P      P     ++ 
Sbjct: 486 PDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAAR 545

Query: 449 SVGAGAEGD 457
           + GA A  D
Sbjct: 546 AGGAAAALD 554

Length = 830

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP-PPMPSGSKVPRP 439
           P PPPP P     PP P   P A PP  +P P  P      P P P  PP     K   P
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASS---PPPTPASPPPAKAPKSSHP 198

Query: 440 PL 441
           PL
Sbjct: 199 PL 200

Length = 274

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 27/64 (42%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 413
           PL PP       P EP        P+   P PPP   P  PPAPA A  AP   P P  P
Sbjct: 81  PLTPPA------PPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDP 134

Query: 414 PPPP 417
           P PP
Sbjct: 135 PQPP 138

Length = 141

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           PPPG    L   P         + PPP  PPPP    PP   P P  P       P  PP
Sbjct: 48  PPPGAYVHLEPLPAY----GQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPP 103

Query: 417 PPRGGPAP 424
           PP  GP  
Sbjct: 104 PPYPGPPQ 111

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.1 bits (128), Expect = 7e-07
 Identities = 28/90 (31%), Positives = 31/90 (34%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           PP            Q       P   A+     PP    P  P+G P  PPPPPAP P  
Sbjct: 709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAA 768

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
           APA AP   PP  +        P      R
Sbjct: 769 APAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798

Length = 824

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 52.0 bits (124), Expect = 8e-07
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 13/91 (14%)

Query: 357 PPPGRAEPLPHEPP------ASLRPHPPSGPPPPPPPPPAPRPP---PAPAPAPRAPPPP 407
           P P R  P P  P            H P     P    PA +P    PA  P  +    P
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQP 233

Query: 408 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 438
            +P   P P        + PP    G K  R
Sbjct: 234 VQPAQQPTPQ----NPAQQPPQTEQGHKRSR 260

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 9e-07
 Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 329 NENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP 388
               + +  + PP        Q +  L+              ++      +   P P   
Sbjct: 344 GAPSEGVAAVAPPAPAPADLTQRLNRLEKEV-------RSLRSAPTAAATAAGAPLPDFD 396

Query: 389 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 422
           P PR PPAP PA  A  PP      P   P G  
Sbjct: 397 PRPRGPPAPEPARSAEAPPL---VAPAAAPAGLA 427

Length = 504

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 24/91 (26%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 372 SLRPHPPSGPPPPPPPPPAPRPPPAPAP-APRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 430
           + RP    G   P     AP   PAPA  AP A  P P   P  P       A       
Sbjct: 362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAA 421

Query: 431 PSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
               + P P        +S        A AP
Sbjct: 422 APARRSPAPEALAAARQASARGPGGAPAPAP 452

Length = 700

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 33/129 (25%), Positives = 41/129 (31%), Gaps = 12/129 (9%)

Query: 323 GTAKSFNENGQVLPPLKPP---PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 379
           GTA          P  +P    P +   +L+ +           P   +PP       P 
Sbjct: 127 GTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQ-QAPQLPQPPQ---QVLPQ 182

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP--PPPPRGGPAPRPPPPMPSGSKVP 437
           G PP     P   PP  P   P+ P   P+   P    P P   PA  P PP        
Sbjct: 183 GMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ---Q 239

Query: 438 RPPLGQKHS 446
            PPL Q   
Sbjct: 240 PPPLQQPQF 248

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 413
              PPP     LP  PP S    P +   P    P     P  P P+P  P  PP   P 
Sbjct: 186 IQPPPPS---SLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPA 242

Query: 414 PPPPPRGGPAPRPPPPMPS 432
           PP PP       PP P P 
Sbjct: 243 PPIPPVIQYVAPPPVPPPQ 261

Length = 582

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.9 bits (125), Expect = 1e-06
 Identities = 30/91 (32%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 369 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 428
              +  P PP   PPPP P P    P A AP P  PPPPP         P   PA   PP
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 429 PMPSGSKVPRPPLGQKHSSSSVGAGAEGDAN 459
           P       P P   +  S   +   A+  A+
Sbjct: 578 PPIPEEPTPSPT--KDSSPEEIDKAAKNLAD 606

Length = 620

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 21/88 (23%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 375 PHPPSGPPPPPPPPPAPRP----PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 430
           P   +          A          P   P  P P     P  P  PR  PAP  PP  
Sbjct: 2   PAGAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRA 61

Query: 431 PSGSKVPRPPLGQKHSSSSVGAGAEGDA 458
             G + P+P       + +  A A   A
Sbjct: 62  TDGDRDPQPLADALAEAMARAAAARFAA 89

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.8 bits (125), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 21/95 (22%), Gaps = 11/95 (11%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
           P P      LQ  PP     G              P     P  P           APA 
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGG-----------PPGGGGAPGAPAAAAAPGAAAAAPAA 426

Query: 400 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
              A      P           PA  P P +   S
Sbjct: 427 GGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 2e-06
 Identities = 23/94 (24%), Positives = 25/94 (26%), Gaps = 1/94 (1%)

Query: 339 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA 398
            P                P   +    P        P PP    PP P     +PPP PA
Sbjct: 704 APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPA 763

Query: 399 PAPRAPP-PPPKPGPPPPPPPRGGPAPRPPPPMP 431
           PAP A P   P P PP                  
Sbjct: 764 PAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797

Length = 824

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 52.0 bits (124), Expect = 2e-06
 Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 335 LPPLKPPPGRVGSTLQGMPPLKPP---PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA- 390
             P    PGR           +PP   PGRA P    P  +  P    G P P PPP A 
Sbjct: 724 ARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAP 783

Query: 391 ------PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
                 PR  P P P P+A P   +  P   P  +G         +  G K  RP L
Sbjct: 784 PAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSL 840

Length = 991

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.8 bits (124), Expect = 2e-06
 Identities = 24/83 (28%), Positives = 28/83 (33%)

Query: 379 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 438
           +GP      P A   P A APA  AP P   P  P   P     A          S  P 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 439 PPLGQKHSSSSVGAGAEGDANAP 461
                + +S+    GA   A AP
Sbjct: 432 ALAAARQASARGPGGAPAPAPAP 454

Length = 700

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 41/89 (46%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA-PPPPPKPG---- 411
           PPP         PP    P     PPPPP P     PPP P P   A PPPPP PG    
Sbjct: 1   PPPPPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGI 60

Query: 412 PPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
           PPPPP P G  A  PPPP+P  + +P PP
Sbjct: 61  PPPPPLP-GATAIPPPPPLPGAAGIPPPP 88

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 33/81 (40%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPP-APRPPPAPAPAPRAPPPPPKPG 411
           PP +P P R  P P  P AS    PPS P P   PPP     P AP   PR  P      
Sbjct: 11  PPRRPSPPRPTP-PRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPAGVTFS 69

Query: 412 PPPPPPPRGG----PAPRPPP 428
              PP P  G    PA  PPP
Sbjct: 70  SSAPPRPPLGLDDAPAATPPP 90

Length = 318

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 31/109 (28%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 325 AKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRA-EPLPHEPPASLRPHPPSGPPP 383
              +N  G+   P  P P  VG       P +   G    P  H   A+LR      P  
Sbjct: 645 RPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHH--AALRAPQAPRPGG 702

Query: 384 PPPP----PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 428
           PP      PP P  P A  PAP        P  PP P P G        
Sbjct: 703 PPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 19/64 (29%), Positives = 20/64 (31%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
           P PPS     P P     PPPA AP      P       P P P    A  PP      +
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 435 KVPR 438
               
Sbjct: 442 AAAS 445

Length = 576

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 334 VLPPLKP-PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
           VLP  +P  P +    + G   + P       LP       +P P   P P  P  P P 
Sbjct: 60  VLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPP 119

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPP 416
             P P   P+ P PP  P  P PP
Sbjct: 120 VHPIPPLPPQPPLPPMFPMQPLPP 143

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 2e-06
 Identities = 25/81 (30%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 362 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 421
                 E   +  P     P P P PPPAP  P AP     A  P P P    PP P   
Sbjct: 361 PSAFISEIANASAP-ANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 422 PAPRPPPPMPSGSKVPRPPLG 442
               P P  P+ +    P L 
Sbjct: 420 EPTEPSPTPPANAANAPPSLN 440

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 14/60 (23%), Positives = 17/60 (28%)

Query: 370 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
            A      P  P   P PPP  +       A       P+   P    PR    P+P   
Sbjct: 13  EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 14/60 (23%), Positives = 17/60 (28%)

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 439
           G      P PAP  P A    P              P      A +P    P   + P+P
Sbjct: 10  GKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKP 69

Length = 475

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 31/80 (38%), Positives = 34/80 (42%)

Query: 347 STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP 406
           S  +   P   PP      P   P S    PP G  P PPP P P   PA  P P    P
Sbjct: 49  SYEEPYDPTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVP 108

Query: 407 PPKPGPPPPPPPRGGPAPRP 426
           PP+  P PP P +   APRP
Sbjct: 109 PPQNYPYPPGPGQDPYAPRP 128

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 33/130 (25%), Positives = 39/130 (30%), Gaps = 17/130 (13%)

Query: 341 PPGRVGSTLQ---GMPPLKPPPGRAEPLPHEPPASLRPHPP-SGPPPPPPPPPAPRPPPA 396
            P R+  T+    G P   PP  R    P  P    RP+    GP     PP  PR    
Sbjct: 80  RPIRIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQL 139

Query: 397 PAPAPRAPP--PPPKPGPPPPPP-------PRGGPAPRPPPPMPS----GSKVPRPPLGQ 443
           P   P  P     P+PG  P           R G  PR P   P+      +  R P   
Sbjct: 140 PTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDA 199

Query: 444 KHSSSSVGAG 453
                     
Sbjct: 200 GRPEYDQRRR 209

Length = 617

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 32/124 (25%), Positives = 37/124 (29%), Gaps = 27/124 (21%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPA------------PRPPPAPAPAPRAPPPPPKP---GP 412
           E     +  P +      P P              PRPPP    +  A  P P P   GP
Sbjct: 5   EEGKPSKSSPKTSVQEDTPTPTVYPDWSAMQAYYGPRPPPPYFNSSVASSPQPHPYMWGP 64

Query: 413 PPP-PPPRGGPAPRPP----------PPMPSGSKVPRP-PLGQKHSSSSVGAGAEGDANA 460
             P  PP G P P             P MP GS    P  +       S     E DA +
Sbjct: 65  QQPMMPPYGTPPPYAAMYPPGGVYAHPSMPPGSHPFSPYAMPSAEVPGSTPLSMETDAKS 124

Query: 461 PKTK 464
              K
Sbjct: 125 SDNK 128

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 12/45 (26%), Positives = 12/45 (26%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 421
               PPP  P    P PP  P      P        P    P  G
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPG 134

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 51.2 bits (122), Expect = 3e-06
 Identities = 35/135 (25%), Positives = 38/135 (28%), Gaps = 13/135 (9%)

Query: 338 LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAP 397
           L PPP         + PL   P    P  H PP  L P        P  PP   +    P
Sbjct: 381 LPPPPA--------LKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLP 432

Query: 398 APAPRAPPPPPKPGPPPPPPPR-----GGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 452
             A   P      GPP  P  +     GG     PPP    S    PP     S     A
Sbjct: 433 PKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSA 492

Query: 453 GAEGDANAPKTKLKP 467
                  A      P
Sbjct: 493 LPSSGGCAGPGPPLP 507

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 16/55 (29%), Positives = 17/55 (30%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
           P   PP P   P  P P    APA +A  P         P        R P P  
Sbjct: 17  PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPAS 71

Length = 475

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 378 PSGPPPPPPPPPAPR---PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
            +    PPPP  A     PPP P     A  PPP   P  PP      AP     
Sbjct: 53  VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTV 107

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.0 bits (122), Expect = 3e-06
 Identities = 47/280 (16%), Positives = 66/280 (23%), Gaps = 36/280 (12%)

Query: 173 PAPAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSG 232
           PAP    A A   A A    T+ T  A             +  + +P         +  G
Sbjct: 381 PAPGARAAAAVG-ASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

Query: 233 TSARADDKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLLSLSL 292
             A   D           V   A     A +          R      Q       + + 
Sbjct: 440 DDAADGD---------APVPAKANARASADS----------RCDERDAQPPADSGSASAP 480

Query: 293 SDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGM 352
           +  +      +           T +         + +          P P     T    
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540

Query: 353 PPLKPPPGRAEPLPHEPPASLR-----------PHPPSGPPPPPPPPPAPRPPPAPAPAP 401
            P     G A  L     A +R              P+  P   P P APR      P P
Sbjct: 541 APAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVA-VQVPTP 599

Query: 402 RAPPPPPKPGPPPP-PPPRGGPAPRPPPP---MPSGSKVP 437
           RA        P       +   +   PPP   +P    VP
Sbjct: 600 RARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVP 639

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.0 bits (122), Expect = 3e-06
 Identities = 25/122 (20%), Positives = 34/122 (27%)

Query: 346 GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 405
           G    G  P +       P      A      P+          A  P  A A A     
Sbjct: 365 GGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAE 424

Query: 406 PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKL 465
            PP    PP    RG  A     P+P+ +        +     +      G A+AP +  
Sbjct: 425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA 484

Query: 466 KP 467
            P
Sbjct: 485 PP 486

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.6 bits (122), Expect = 3e-06
 Identities = 22/86 (25%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 358 PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP---- 413
           P     P    P AS +          PP  PA  PPPA AP      P P+        
Sbjct: 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425

Query: 414 PPPPPRGGPAPRPPPPMPSGSKVPRP 439
                R   A +     P+ +   RP
Sbjct: 426 RQQLQRAQGATKAKKSEPAAASRARP 451

Length = 647

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.7 bits (121), Expect = 3e-06
 Identities = 25/92 (27%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 343 GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR 402
            R    +   P   P   +  P   EP     P P   P P  P  P  RP   P+PA  
Sbjct: 374 VRNDGGVAPSPAGSPDVKKKAP---EPDL---PQPDRHPGPAKPEAPGARPAELPSPASA 427

Query: 403 APPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
             P    P     P P   P    P  + SG 
Sbjct: 428 PTPEQQPPVARSAPLPP-SPQASAPRNVASGK 458

Length = 620

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 35/100 (35%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 351 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA---PAPRAPPPP 407
           G  PL P P  A P P  P       P +  P    P PAP  PPA A   P P   P P
Sbjct: 78  GQSPLAPSPACAAPAPACPA----CAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAP 133

Query: 408 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 447
            +P P  PP  R  P P PP P P  +   +P        
Sbjct: 134 ARPAPACPPSTRQCP-PAPPLPTPKPAPAAKPIFLHNQLP 172

Length = 280

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 4e-06
 Identities = 18/105 (17%), Positives = 21/105 (20%)

Query: 359 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
           P         PPA     PP     P  P     P         A P      P P    
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 419 RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKT 463
                     P  S      P      + ++        A A   
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

Length = 824

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 24/75 (32%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP-PPAPRPPPAP-APAPRAPPPPPKP 410
               P        P  P     P   +    PPP  P AP P P P  P P  PP P  P
Sbjct: 33  ESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAP 92

Query: 411 GPPPPPPPRGGPAPR 425
             P   PP   P P+
Sbjct: 93  PAPARKPPLPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 361 RAEPLPHEPPASLRPHP-PSGPPPPPPPPPAPRPPPAPAPAPRAPPP----PPKPGPPPP 415
           R    P          P P     PP     PR P    P  + PP     P +P P P 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 416 PPPRGGP---APRPPPPMPSGSKVPRP 439
             P   P    P   P  P  +  P+P
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQP 156

Length = 333

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 50.3 bits (120), Expect = 4e-06
 Identities = 31/152 (20%), Positives = 44/152 (28%), Gaps = 4/152 (2%)

Query: 309 IGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHE 368
             +  G+ S G   G     + + + +  +K    R+G   +  PP  PP  R   +   
Sbjct: 494 TPESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPKSRRTLIVAL 553

Query: 369 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 428
             AS  P     P P P            A A          G                 
Sbjct: 554 SLAS--PSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSK 611

Query: 429 PMPSGSKVPRPP--LGQKHSSSSVGAGAEGDA 458
           P+       +P    G+  SSS VGA     A
Sbjct: 612 PLTGPGSDLKPATLNGKTPSSSLVGAARNAGA 643

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 50.2 bits (121), Expect = 4e-06
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 4/54 (7%)

Query: 376 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG----GPAPR 425
             P+    P    PA     APAPAP A   P    P     P       PA R
Sbjct: 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVR 250

Length = 547

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 20/39 (51%), Positives = 20/39 (51%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           P  P PP P PPAP PPP PAP    P P  KP     P
Sbjct: 7   PKPPEPPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAP 45

Length = 94

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 27/75 (36%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           P  PPP    +     P   PPP      P   P      PP  P  P  PPP P  P A
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100

Query: 397 PAPAPRAPPPPPKPG 411
           P      PPP P+PG
Sbjct: 101 P------PPPAPEPG 109

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 22/67 (32%), Positives = 24/67 (35%)

Query: 374 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 433
           R  P S      PPP A           +   PPP   PPP  P   G  P PPPP    
Sbjct: 36  RAQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGY 95

Query: 434 SKVPRPP 440
              P+ P
Sbjct: 96  MADPQEP 102

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.0 bits (120), Expect = 5e-06
 Identities = 19/65 (29%), Positives = 21/65 (32%)

Query: 376 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 435
              +      PPPP   PPP     P   P    P P PPPPP          P    + 
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573

Query: 436 VPRPP 440
              PP
Sbjct: 574 SSPPP 578

Length = 620

>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 384 PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
           P       +P   P P P    P  +   P P    G  A   P PMP
Sbjct: 24  PAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADA--MPSPMP 69

Length = 130

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
           P PP    PP    PAP  P  P  +  A PP P    P P      P P  PP  P
Sbjct: 85  PAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAA---PPPSDPPQPP 138

Length = 141

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.8 bits (119), Expect = 6e-06
 Identities = 29/165 (17%), Positives = 36/165 (21%), Gaps = 44/165 (26%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPP--------PP 387
                 P     +        PP    EP P     S            P        P 
Sbjct: 464 DERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523

Query: 388 PPAPRPPPAPAPAP-------------------------------RAPPPPPKPGPPPPP 416
             AP  P A  P P                                      KP   P  
Sbjct: 524 AAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAA 583

Query: 417 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
            P+   APR    +P+    PR       +  +  A AE  A + 
Sbjct: 584 APKP-AAPRVAVQVPT----PRARAATGDAPPNGAARAEQAAESR 623

Length = 830

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.5 bits (119), Expect = 6e-06
 Identities = 20/84 (23%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 364 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP-RGGP 422
           P P E    L+  PPS       PP     P APA A         P    P       P
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVP 437

Query: 423 APRPPPPMPSGSKVPRPPLGQKHS 446
                   P        P  + +S
Sbjct: 438 DAAAAAAAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 49.8 bits (119), Expect = 6e-06
 Identities = 32/142 (22%), Positives = 37/142 (26%), Gaps = 21/142 (14%)

Query: 337 PLKPPPGRVGSTLQGMPP-------LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP- 388
           P  P PGR      G P        L          P  P    RP P + P        
Sbjct: 108 PELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGW 167

Query: 389 ---PAPRPPPAPAPAPRAPPPPPKPGPPPP-------PPPRG---GPAPRPPPPMPSGSK 435
                  PP AP  +P +  P  +    P           R     P P    P    + 
Sbjct: 168 QQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTD 227

Query: 436 VPRPPLGQKHSSSSVGAGAEGD 457
            P PP G  H         E D
Sbjct: 228 RPEPPPGAGHVHRGGPGPPERD 249

Length = 617

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 49.6 bits (119), Expect = 6e-06
 Identities = 20/94 (21%), Positives = 22/94 (23%), Gaps = 4/94 (4%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEP--LPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
           PP    P  V       P  +P P   E           L     +   P    P AP  
Sbjct: 64  PPPAAAPAAVSRP--AAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAE 121

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
             A   A R         P P  P     A    
Sbjct: 122 RAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 24/57 (42%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 409
           PP  P P          PA   P P S P  PP P  A  P PA AP P  PP PP+
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAV-PAPAAAPPPSDPPQPPR 139

Length = 141

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.6 bits (119), Expect = 7e-06
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 372 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
               +    PPPP   PP   PP    P P+     P P PPPPPP     +   P  +P
Sbjct: 515 GSASNTAKTPPPPQKSPP---PPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 432 SGSKVPRPP 440
           + S  P P 
Sbjct: 572 ADSSPPPPI 580

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 49.1 bits (117), Expect = 7e-06
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 388 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
            PAP  PP+PA AP  PPP     P          APR   P     +  R P
Sbjct: 16  QPAP-APPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKP 67

Length = 475

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.5 bits (119), Expect = 7e-06
 Identities = 19/100 (19%), Positives = 24/100 (24%), Gaps = 11/100 (11%)

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP---------- 401
           +PP    P  +      P A++ P      PPPP   P   P                  
Sbjct: 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQL 429

Query: 402 -RAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
            RA          P    R  P       + S    P   
Sbjct: 430 QRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSAL 469

Length = 647

>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 27/74 (36%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 374 RPHPPSGPPPPPPPPP----APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
           RP  P   P  PP P     AP  P  P   P+A  P  +P PP     RGGP P PP  
Sbjct: 124 RPALPEIKPLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQPRPPMMGYGRGGP-PFPPNQ 182

Query: 430 MPSGSKVPRPPLGQ 443
              G        GQ
Sbjct: 183 YGGGRGNYDEFRGQ 196

Arsenite is a carcinogenic compound which can act as a co-mutagen by inhibiting DNA repair. Arsenite-resistance protein 2 is thought to play a role in arsenite resistance. Length = 211

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (118), Expect = 8e-06
 Identities = 22/69 (31%), Positives = 25/69 (36%)

Query: 372 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
           S      + PPP   PPP    PP P P   APPP P P PP           + P    
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 432 SGSKVPRPP 440
               +P  P
Sbjct: 576 PPPPIPEEP 584

Length = 620

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.5 bits (118), Expect = 8e-06
 Identities = 30/160 (18%), Positives = 41/160 (25%), Gaps = 14/160 (8%)

Query: 319 GAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRA-EPLPHEPPASLRPHP 377
           GA GG   +        P  +       S +  +  +    G A  P      A+ R   
Sbjct: 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425

Query: 378 PSGPPPPPP-------PPPAPRPPPAPAPAP---RAPPPPPKPGPPPPPPPRGGPAPRPP 427
           P   P PP              P PA A A     +        PP        PA   P
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

Query: 428 PPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
           P        P P      +++           A   +  P
Sbjct: 486 PDAA---FEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522

Length = 830

>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein

 Score = 48.9 bits (117), Expect = 8e-06
 Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRA-EPLPHEPPASLRPHPPSGPPPP--PPPPPAPRPPPA 396
           P   R+       P ++  P  A  PL    P+   PHPPS  P           R PP+
Sbjct: 362 PTKRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALPSHVGASSSKHHRLPPS 421

Query: 397 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 433
             P PR   P P P  P   P    P   PP P P  
Sbjct: 422 VLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTPSPPS 458

Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.1 bits (117), Expect = 8e-06
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 370 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR 419
           PA+L  + P   P P    P P+  PAP P P    P P  G P     R
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRP-VLAPTPASGEPNAAAVR 436

Length = 584

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 17/63 (26%), Positives = 21/63 (33%)

Query: 399 PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDA 458
           PAP  PPP      P P  P   P P  PP          PP      ++      + +A
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100

Query: 459 NAP 461
             P
Sbjct: 101 PPP 103

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.6 bits (118), Expect = 1e-05
 Identities = 37/138 (26%), Positives = 41/138 (29%), Gaps = 25/138 (18%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR---------AP 404
           PL+       P P     + R    +     PPPPP    P   A  P          AP
Sbjct: 247 PLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAP 306

Query: 405 PPPPKPGPPPPPPPRGG---------------PAPRPPPPMPSG-SKVPRPPLGQKHSSS 448
              P P  PPPP P G                P PRP    P G  K  RP      S  
Sbjct: 307 LALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLE 366

Query: 449 SVGAGAEGDANAPKTKLK 466
            + AG      A     K
Sbjct: 367 DLSAGRHHPKRASLPTRK 384

Length = 3151

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 33/140 (23%), Positives = 45/140 (32%), Gaps = 12/140 (8%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
           Q      PP  +  S L   PP +      +P P + P    P  P  PP   P    P+
Sbjct: 86  QQQQSQAPPSHQYPSQL---PPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQ 142

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP------PPMPSGS---KVPRPPLGQ 443
           PPP      +   PP +P     PPP+   AP+         P    S     P P    
Sbjct: 143 PPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMA 202

Query: 444 KHSSSSVGAGAEGDANAPKT 463
                S    ++     P+ 
Sbjct: 203 MQPPYSGAPPSQQFYGPPQP 222

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 25/97 (25%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLK----PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP 388
              P  +PP  +V       P             +P P +P    +P  P   P P P  
Sbjct: 101 PRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPL--QQPVSPQVAPAPQPVH 158

Query: 389 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
            AP  P   A  P  P   P+P P   P P      R
Sbjct: 159 SAP-QPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 27/115 (23%), Positives = 31/115 (26%), Gaps = 17/115 (14%)

Query: 370 PASLRPHPPSGPPPPPP--------------PPPAPRPPPAPAPAPRAPPPPPKPGPPP- 414
           P  L   P  G    PP              P  APR  PA    P  P P P+    P 
Sbjct: 160 PLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPE 219

Query: 415 --PPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
             P P      P    P PS +           +  +      G   AP     P
Sbjct: 220 TTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATP 274

Length = 401

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.8 bits (117), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 5/85 (5%)

Query: 348 TLQGM---PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAP 404
           TL G+     +      + P    P  +  P P    P  P    A   P  P       
Sbjct: 355 TLLGLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKA--S 412

Query: 405 PPPPKPGPPPPPPPRGGPAPRPPPP 429
           PP P P  P  P P         PP
Sbjct: 413 PPIPVPAEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 33/128 (25%), Positives = 37/128 (28%), Gaps = 26/128 (20%)

Query: 337 PLKPPPGRVGSTLQ--GMPPLKPPPGRAEPLPH-----EPPASLRPH------PPSGPPP 383
                    G   Q  G PP  P    A   P      EP  + RP           P P
Sbjct: 157 AWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRP 216

Query: 384 PPPPP-----PAPRPPPAPAPAPRAPPPPPKP--------GPPPPPPPRGGPAPRPPPPM 430
               P       P PPP      R  P PP+          P  P P    PAP P P  
Sbjct: 217 DWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGE 276

Query: 431 PSGSKVPR 438
           P+    P+
Sbjct: 277 PTARLNPK 284

Length = 617

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.7 bits (117), Expect = 1e-05
 Identities = 21/91 (23%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 374 RPHPPSGPP--PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
            P  P   P  PP    PA       AP     PP     PPPP          P P   
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 432 SGSKVPRPPLGQKHSSSSVGAGAEGDANAPK 462
           S     R  L +   ++         A+  +
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRAR 450

Length = 647

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 48.7 bits (117), Expect = 1e-05
 Identities = 12/58 (20%), Positives = 14/58 (24%)

Query: 367 HEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
                 +     +      P   AP    A APAP            P      G AP
Sbjct: 186 GSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP 243

Length = 547

>gnl|CDD|177618 PHA03381, PHA03381, tegument protein VP22; Provisional

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 365 LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG--GP 422
             ++   +  P+  +G       P  PRP   P   P A  P P  G   P   RG    
Sbjct: 62  HHYDEARADYPYY-TGSSSEDERPADPRPSRRPHAQPEASGPGPARGARGPAGSRGRGRR 120

Query: 423 APRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
           A  P P  P   K    P G+K  S+   + A  DA AP
Sbjct: 121 AESPSPRDPPNPKGASAPRGRK--SACADSAALLDAPAP 157

Length = 290

>gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription factor N terminal domain

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 18/110 (16%)

Query: 351 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPP--PPPPPPAPRPPPAPAPAPRAPPP-- 406
           G  P  PP     P+   P  ++R   PSGP     PP P  P P  +P P P + P   
Sbjct: 129 GFKPPTPPSTPCSPV--NPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSS 186

Query: 407 ----------PPKPGPPPPPPPRGGPAPRPPPPMPSGSK--VPRPPLGQK 444
                       +P  P PPPP  G     PP     S+  VP PP G K
Sbjct: 187 YPSEHRFQRQLSEPCLPFPPPPGRGSRDGRPPYHRQMSEPLVPYPPQGFK 236

The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites. Length = 336

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 18/67 (26%), Gaps = 4/67 (5%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP-PPPMPSGSK 435
           P   P     P P       P P         +P P         P P P P P P    
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEE---GEEEPEPEETGEEEPEPEPEPEPEPEPEPEP 116

Query: 436 VPRPPLG 442
            P P  G
Sbjct: 117 EPEPEPG 123

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2)

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 366 PHEPPASLRPHPPS-GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP--PPPRGGP 422
           P  PPA    + PS   PP    P A  P P P+     P        P    PP    P
Sbjct: 2   PDAPPAYSELYQPSYVVPPQAQMPQASAPYPGPSMY--LPMAQVMAVGPQSSHPPMAYYP 59

Query: 423 APRPPPPMPSGSKVP 437
              PPP  P GS V 
Sbjct: 60  IGAPPPVYPPGSTVL 74

DAZ associated protein 2 has a highly conserved sequence throughout evolution including a conserved polyproline region and several SH2/SH3 binding sites. It occurs as a single copy gene with a four-exon organisation and is located on chromosome 12. It encodes a ubiquitously expressed protein and binds to DAZ and DAZL1 through DAZ repeats. Length = 136

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP--PPPPRGGPAPRPPPPMPSGSKVP 437
           G  P   P PA   P A +PA   P P   P       P P+      P     +   V 
Sbjct: 193 GSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVR 252

Query: 438 R 438
           R
Sbjct: 253 R 253

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 33/160 (20%), Positives = 41/160 (25%), Gaps = 35/160 (21%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPH---------------- 376
           Q   P    P +    L+   P+   P R +P+         PH                
Sbjct: 612 QSHIPETSAPRQWPMPLR---PIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQ 668

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP--------PPRGGPAPRPPP 428
               P  P P       P   AP     PPP  P P  PP         P        PP
Sbjct: 669 IGHIPYQPSPTGANTMLPIQWAPG-TMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPP 727

Query: 429 PM-------PSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
                    P+ +     P       +   A A G A  P
Sbjct: 728 AAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPP 767

Length = 991

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 48.5 bits (115), Expect = 2e-05
 Identities = 41/155 (26%), Positives = 49/155 (31%), Gaps = 22/155 (14%)

Query: 335 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP--HPPSGPPPP-------- 384
           +P L     +    LQG  P    P    P P   P S  P  HPPS  PPP        
Sbjct: 354 IPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQ 413

Query: 385 PPPPPAPRPP------PAPAPAPRAPPPPPKPGPPPPPPPR------GGPAPRPPPPMPS 432
           P      +PP        P  A   P      GPP  P  +      G PA  PPP +P+
Sbjct: 414 PLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPT 473

Query: 433 GSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
            +    P              + G    P   L P
Sbjct: 474 STPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPP 508

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHE-PPASLRPHPPSGPPPP------- 384
           Q+L P  PP  +V       P   PP   A+ +P +  P + +P P    P P       
Sbjct: 171 QLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAP 230

Query: 385 ---PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
              P   P+P PP  P  A +  P PP P    P     GP P  P  +  G    + P
Sbjct: 231 SLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHP 289

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 30/88 (34%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 413
           P  PPP     +   PP ++ P  P    P P  P      P P PA   P   PK   P
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPA---SSPPPTPASPPPAKAPKSSHP 198

Query: 414 PPPPPRGG-----PAPRPPPPMPSGSKV 436
           P   P  G     PAP  PP +  G KV
Sbjct: 199 PLKSPMAGTFYRSPAPGEPPFVKVGDKV 226

Length = 274

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 27/117 (23%), Positives = 34/117 (29%), Gaps = 3/117 (2%)

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
             P   PP      P EP     P PP   P   P P      P P P P+ P P PK  
Sbjct: 56  PQPEPEPPEEQPKPPTEPETPPEPTPP--KPKEKPKPEKKPKKPKPKPKPK-PKPKPKVK 112

Query: 412 PPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPF 468
           P P P           P  P+    P        +++   A           +   +
Sbjct: 113 PQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRY 169

Length = 244

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
                PPPP        PP P PA      PP P  P  PP    P   P     + +K 
Sbjct: 54  TVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEP-EAPAENTVTVAKD 112

Query: 437 PR 438
           PR
Sbjct: 113 PR 114

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.9 bits (115), Expect = 2e-05
 Identities = 21/128 (16%), Positives = 27/128 (21%), Gaps = 3/128 (2%)

Query: 315 TASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLR 374
             S         +      V PP  P      ++     P  P P     L        R
Sbjct: 372 PQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQR 431

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP--PPMPS 432
               +      P   A R  P  +   R     P P      P +          P    
Sbjct: 432 AQGATKAKKSEP-AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVK 490

Query: 433 GSKVPRPP 440
              V  P 
Sbjct: 491 KEPVATPK 498

Length = 647

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 14/59 (23%), Positives = 18/59 (30%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 426
            P A+    P   P PP  P       PA A   ++P         P  P    P+   
Sbjct: 86  PPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGS 144

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 371 ASLRPHPPSGPPPPPPPPPAPRPPPAPA-PAPRAPPPPPKPGP-PPPPPPRGGPA 423
                 P            +    PA A  AP  PP PP   P PP    RG  A
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 349 LQGMPPLKPPPGRAEPLPHE--PPASLRPH---PPSGPPPPPPPPPAPRPPPAPAPAPRA 403
           +QG    +P P           P A LR       + PP P PPPP     P P    RA
Sbjct: 2   IQGARLARPAPADPARPARRRTPLAQLRRRDALAYAPPPRPEPPPPCDEDRPEPRADTRA 61

Query: 404 PPPPPK------PGPPPPPPPRGGPA 423
             PPP+      P  PP  P      
Sbjct: 62  SDPPPEAPTDADPAQPPDDPDASAHT 87

This family of genes is always found in type III secretion operons, althought its function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. Length = 201

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 26/87 (29%), Gaps = 2/87 (2%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
           P L P  G A P+P    A  +            P  AP+     A AP A P       
Sbjct: 229 PLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAA 288

Query: 413 PPPPPPRGGPAPRPPPPMPSGSKVPRP 439
            P P              P+    PRP
Sbjct: 289 EPAPKEAA--KAAAAAAKPALEDKPRP 313

Length = 400

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 47.8 bits (113), Expect = 3e-05
 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 350 QGMPPLKPPPGRA-EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 408
           QG P ++ PPG A  P    P  S +  PP G P    P P P+ P   +        P 
Sbjct: 176 QGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQ 235

Query: 409 K-PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 443
           + P P PP  P+      P PP PS S+ P+     
Sbjct: 236 RLPSPHPPLQPQTASQQSPQPPAPS-SRHPQSSHHG 270

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 25/103 (24%), Positives = 29/103 (28%), Gaps = 5/103 (4%)

Query: 331 NGQVLPPLKPPPGRVGSTLQGMPPLK----PPPGRAEPLPHEPPASLRPHPPSGPPPPPP 386
           N       +    R     Q  PP        P +  P    PP    P P    P P  
Sbjct: 72  NHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQH-APRPAQPAPQPVQ 130

Query: 387 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
            P     P  P   P +P   P P P    P     A +P  P
Sbjct: 131 QPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEP 173

Length = 333

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 22/100 (22%), Positives = 30/100 (30%), Gaps = 2/100 (2%)

Query: 330 ENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPP 389
            + Q   P++ PP           P +P P   +   ++P        P  P   P P P
Sbjct: 97  ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQP 156

Query: 390 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
               P     A +   P   P P P   P   P    P  
Sbjct: 157 VHSAPQPAQQAFQPAEPVAAPQPEPVAEP--APVMDKPKR 194

Length = 333

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 330 ENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPP 389
           E  ++L PL PP           PP    P  A P P        P  P+   P P   P
Sbjct: 74  EARKILAPLTPPA----PPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAP 129

Query: 390 APRPPPAPAPAPRAP 404
            P  PP P   PRAP
Sbjct: 130 PPSDPPQP---PRAP 141

Length = 141

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 46.4 bits (109), Expect = 3e-05
 Identities = 31/100 (31%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           PL P P                P  A   P   PA      P+ PPP   P PA   P  
Sbjct: 81  PLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPAC 140

Query: 397 PAPAPRAPPPPPKPGPPPPPPPRGGPAPR--PPPPMPSGS 434
           P    + PP PP P P P P  +        PPP  P+ S
Sbjct: 141 PPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAAS 180

Length = 280

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 25/113 (22%), Positives = 30/113 (26%), Gaps = 5/113 (4%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP-PAPAPAPRAPPPPPKPGP 412
            +K   G   PL         P PPS    P             PA AP+A     K   
Sbjct: 219 TVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPE 278

Query: 413 PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKL 465
             P        P P     + +   +P L  K        G      A   KL
Sbjct: 279 AQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRP----LGIARPGGADDLKL 327

Length = 400

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 15/69 (21%), Positives = 19/69 (27%), Gaps = 9/69 (13%)

Query: 350 QGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 409
              PP         P         +P+    PPPP  PP   +    P      P   P+
Sbjct: 8   NQYPPQNQQQQ---PYQQ------QPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQ 58

Query: 410 PGPPPPPPP 418
              PP    
Sbjct: 59  QQQPPQFSS 67

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 14/59 (23%), Positives = 17/59 (28%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 433
                 P      P   +P     P P   PP  + G   PP P+  P   P    P  
Sbjct: 6   NTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQPPQ 64

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 9/110 (8%)

Query: 360 GRAEPLPHE-PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
           G  + + +  PP+++    P  PP P  PP  P P P    AP  P    +     P   
Sbjct: 48  GEKKRINNTQPPSNVERGTPPLPPLPDDPPL-PPPLPVDLGAPVLPDQQVEEAKDQPR-- 104

Query: 419 RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPF 468
                      + + S              +  A A   A AP    +P 
Sbjct: 105 -----RLRAAELAATSGSRVESDRAVGRVRAALANAAPAAAAPPPAGQPS 149

Length = 360

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.2 bits (113), Expect = 4e-05
 Identities = 17/76 (22%), Positives = 19/76 (25%), Gaps = 2/76 (2%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
                  S     P  K P   A   P     +  P P +       P   P    A AP
Sbjct: 49  AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP 108

Query: 400 APRAPPPPPKP--GPP 413
           A  A      P  G  
Sbjct: 109 AAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSS 448
           PP PAP     PPPP   PP  PP    PAP  P   P       PP  +   SS
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPA-AQPAPSAPASSPP-PTPASPPPAKAPKSS 196

Length = 274

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 27/123 (21%), Positives = 33/123 (26%), Gaps = 3/123 (2%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
             P          P  +P P      P EP        P   P   P  P P+P P P P
Sbjct: 50  EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKP--KPEKKPKKPKPKPKPKPKP 107

Query: 400 APRAPPPP-PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDA 458
            P+  P P PK  P            +P  P  + S             S +        
Sbjct: 108 KPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAP 167

Query: 459 NAP 461
             P
Sbjct: 168 RYP 170

Length = 244

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 46.9 bits (112), Expect = 4e-05
 Identities = 18/84 (21%), Positives = 22/84 (26%), Gaps = 12/84 (14%)

Query: 369 PPASLRPHPPSGPPPPPPP----PPAPRPPPAP--------APAPRAPPPPPKPGPPPPP 416
           PPA+  P     PP   P     P AP   PAP          A R         P  P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 417 PPRGGPAPRPPPPMPSGSKVPRPP 440
                          +  ++ R  
Sbjct: 113 AQAPAAPAERAAAENAARRLARAA 136

Length = 484

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 18/85 (21%), Positives = 23/85 (27%), Gaps = 1/85 (1%)

Query: 350 QGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 409
           +G        G  +    +P           P       P P       P P       +
Sbjct: 41  KGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPE-ETGEEE 99

Query: 410 PGPPPPPPPRGGPAPRPPPPMPSGS 434
           P P P P P   P P P P    G+
Sbjct: 100 PEPEPEPEPEPEPEPEPEPEPEPGA 124

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 46.4 bits (110), Expect = 4e-05
 Identities = 14/54 (25%), Positives = 15/54 (27%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
           P   P   P P P P  +PA      P        P      A  P  P  S  
Sbjct: 87  PAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 362 AEPLPHEPPA-SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
             P    P A +      + P  P    P P PP A  P P A   PP+P P   PPP
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPP 179

Length = 418

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 17/48 (35%), Positives = 20/48 (41%)

Query: 369 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           P A+  P P   PPPPPPPP  P P   P    +  P   +     P 
Sbjct: 261 PRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 20/53 (37%), Positives = 23/53 (43%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
             PP      PPPP   + PP P  +P    PPP     PPPP     +P PP
Sbjct: 5   SPPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 47.1 bits (112), Expect = 5e-05
 Identities = 28/117 (23%), Positives = 31/117 (26%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
           PP  +               G   P P           PS      P  P        AP
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695

Query: 400 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 456
               P  PP  G   PPPP    A  P P   S    P  P   +   +    GAE 
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAEN 752

Length = 753

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 28/118 (23%), Positives = 38/118 (32%), Gaps = 3/118 (2%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPP---PPPPPAPR 392
              + PP +        P  +  P  +   P E P   + +PP+ P P      PP +  
Sbjct: 151 QQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGA 210

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSV 450
           PP      P  P P    GP   P        +PPP           P   K +  SV
Sbjct: 211 PPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSV 268

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 47.0 bits (111), Expect = 5e-05
 Identities = 36/130 (27%), Positives = 44/130 (33%), Gaps = 15/130 (11%)

Query: 332 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
           G  L P  PPP      +   P   P   +  P P +P        PS  P   P P  P
Sbjct: 186 GAALAPSAPPPTPSAQAVP--PQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPP 243

Query: 392 --------RPPPAPAPAPRAPPPP-PKPGPPPPPPPRGGPAPRPPP----PMPSGSKVPR 438
                   + P  PAP+ R P      PGPP P   + GP     P    P P G    +
Sbjct: 244 LQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQ 303

Query: 439 PPLGQKHSSS 448
            P     S +
Sbjct: 304 VPPLPLPSQA 313

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 365 LPHEPPASLRPHPPSGPPP---PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 421
           +P +P   +       P     P  P PA +P       P  P  P +P PP  P P   
Sbjct: 68  VPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIP--- 124

Query: 422 PAPRPPPPMPSGSKVPRPPL 441
           P P  PP  P     P PPL
Sbjct: 125 PLPPQPPLPPMFPMQPLPPL 144

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.8 bits (111), Expect = 5e-05
 Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 346 GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 405
           G+  +G+  + PP      L        +        P      A  P P   P PR PP
Sbjct: 344 GAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPP 403

Query: 406 PPPKPGPPPPPPPRGGPAPRPPPPMPSG 433
            P        PP         P   P+G
Sbjct: 404 APEPARSAEAPP------LVAPAAAPAG 425

Length = 504

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.8 bits (112), Expect = 5e-05
 Identities = 18/102 (17%), Positives = 23/102 (22%), Gaps = 1/102 (0%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
            P  P P      L     L+   G  +    EP A+ R   P            P P  
Sbjct: 410 APAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA-RPVNSALERLASVRPAPSA 468

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
                 +      K   P          P+         K P
Sbjct: 469 LEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510

Length = 647

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 46.4 bits (111), Expect = 5e-05
 Identities = 14/54 (25%), Positives = 15/54 (27%)

Query: 369 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 422
             A   P   +      P   A       APAP AP  P       P  P G  
Sbjct: 85  SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTE 138

Length = 464

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 47.0 bits (111), Expect = 5e-05
 Identities = 26/109 (23%), Positives = 29/109 (26%), Gaps = 23/109 (21%)

Query: 346 GSTLQGMPPLKPPPGRAEPLPHEP--------PASLRPHPPSGPPPPPPPPPAPRPPPAP 397
             T +    L+         P  P        P SL      G    P PPP     P P
Sbjct: 396 KLTERAREALEKASEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGP 455

Query: 398 ------------APAPRAPPPPPKPG---PPPPPPPRGGPAPRPPPPMP 431
                       A  P  P    +PG   P      R   AP P P  P
Sbjct: 456 LHDQHSMAPCPVAQLPPGPLQDLEPGDQLPGVVQDGRPACAPVPAPAGP 504

Length = 935

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 47.3 bits (112), Expect = 5e-05
 Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 7/34 (20%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
           P G PPPPPPPP   P       P  PPPPP PG
Sbjct: 5   PPGNPPPPPPPPGFEP-------PSQPPPPPPPG 31

Length = 2365

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 46.8 bits (111), Expect = 5e-05
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 386 PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 445
           P   A    P   P+P  P       P   P P    A +P  P  SG ++   PL +K 
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEP---KASKPSAPPSSGDRIFASPLARKL 258

Query: 446 S-------SSSVGAGAEG 456
           +       SS  G G +G
Sbjct: 259 AEDNNVPLSSIKGTGPDG 276

Length = 539

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 46.7 bits (111), Expect = 5e-05
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 407
                AS + + P  P P P    AP P  A   AP A P P
Sbjct: 48  LGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.4 bits (110), Expect = 6e-05
 Identities = 26/134 (19%), Positives = 35/134 (26%), Gaps = 8/134 (5%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLP----HEPPASLRPHPPSGPPPPPP--PPP 389
           P  +       ++ +G      P       P        A  RP   +    P    P  
Sbjct: 428 PAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487

Query: 390 APRP-PPAPAPAPRAPPPPPKPGP-PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 447
           AP P    P P    PP    P P  P   P G  A   P P  +        L    ++
Sbjct: 488 APAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547

Query: 448 SSVGAGAEGDANAP 461
           +     A       
Sbjct: 548 APAPRAAAATEPVV 561

Length = 700

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 46.2 bits (109), Expect = 6e-05
 Identities = 17/47 (36%), Positives = 18/47 (38%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 400
              P P  A   P   PA+  PH    PP P P P     P A AP 
Sbjct: 213 EEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPV 259

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 46.2 bits (109), Expect = 7e-05
 Identities = 20/91 (21%), Positives = 22/91 (24%), Gaps = 17/91 (18%)

Query: 370 PASLRPHPPSG---PPPPPPPPPAP--------------RPPPAPAPAPRAPPPPPKPGP 412
           PA       SG   PP PP   PAP              R  P P   P    P  +P  
Sbjct: 159 PAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTV 218

Query: 413 PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 443
             P         + P           P    
Sbjct: 219 QNPAQQPQQQPQQQPVQPAQQPTPQNPAQQP 249

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 19/59 (32%), Positives = 20/59 (33%)

Query: 356 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 414
            PP                P  P    P P PP A +P P  A  P  P P  KP P P
Sbjct: 123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181

Length = 418

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 19/75 (25%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           P +P P  V        P +P      P     P  +   P        P  P   P P 
Sbjct: 121 PAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPE 180

Query: 397 PA--PAPRAPPPPPK 409
           P   PAP    P  K
Sbjct: 181 PVAEPAPVMDKPKRK 195

Length = 333

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 30/113 (26%), Positives = 35/113 (30%), Gaps = 18/113 (15%)

Query: 354 PLKPPPGRAEPLPH-EPPASLRPHPPSGPPPPPPPPPAPRP--PPAPAPAPRAP------ 404
            +  P    +P P  +    L P  P  P       P P P   P  + A   P      
Sbjct: 121 TVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPV 180

Query: 405 ----PPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAG 453
               PP P+P PP  P P      R      S  K  R    Q    S VG G
Sbjct: 181 TLELPPAPQPPPPVVPQPSTMVVHR-----RSRIKRTRSSGWQATLDSIVGLG 228

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 39/130 (30%), Positives = 46/130 (35%), Gaps = 28/130 (21%)

Query: 333 QVLPPLKP------PPGRVGSTLQGMPPLKPPPGRAEPLPHEP---PASLRPHPPSGPPP 383
           QV P   P       P R G  +Q  P +   PG  +  PH P   P  +RP    G  P
Sbjct: 156 QVQPQFGPNPQQRINPQRFGFPMQ--PNMGMRPGFNQMPPHMPGMPPNQMRP----GFNP 209

Query: 384 PPPPPPAPRPPPAPAPAPRAPPP--PPKPG--PPPPPPPRGGPAPRP---------PPPM 430
            P  PP P     P   P    P   P+PG    P  P       RP         PPP 
Sbjct: 210 MPGMPPRPGFNQNPNMMPNMNRPGFRPQPGGFNHPGTPMGPNMQQRPGFNPNQGMNPPPH 269

Query: 431 PSGSKVPRPP 440
            +G +   PP
Sbjct: 270 MAGPRAGFPP 279

This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 23/93 (24%), Positives = 26/93 (27%), Gaps = 9/93 (9%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGP---------PPPPPPPPAPRPPPAPAPAPRAPPPP 407
           P       LP  P                     P   PP      P  P P      PP
Sbjct: 65  PLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPP 124

Query: 408 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
           P    PPP        P+PPP +P   +   PP
Sbjct: 125 PSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPP 157

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 46.0 bits (110), Expect = 9e-05
 Identities = 14/54 (25%), Positives = 17/54 (31%)

Query: 379 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
           +   P     PA   P A A A  AP P     P    P       + P   P+
Sbjct: 195 AAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPA 248

Length = 547

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP----APRP 426
           G          P P PAPAPA  + P P  P  P P P   G     AP P
Sbjct: 42  GIDLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMP 92

Length = 153

>gnl|CDD|218108 pfam04487, CITED, CITED

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 28/137 (20%), Positives = 30/137 (21%), Gaps = 35/137 (25%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEP--LPHEPP----ASLRPHPPSGPPPPPPPPPA 390
           P      R+G      P   P   RA    L H P     AS RP      P     P  
Sbjct: 15  PDGAKGARMGMNSLAAPNHGPHDLRALMGTLLHYPGGGMDASGRPRSAMSGPMGGGHPHQ 74

Query: 391 PRPPPA------------PAPAP-----------------RAPPPPPKPGPPPPPPPRGG 421
             P                 P P                  A  P   PG   P   R G
Sbjct: 75  SMPAYMMFNPSSKPQPFMLVPGPQLMASMQLQKLNTQYQGHAGAPAGHPGGGGPQQFRPG 134

Query: 422 PAPRPPPPMPSGSKVPR 438
               P         +P 
Sbjct: 135 AGQPPGMQHMPAPALPP 151

CITED, CBP/p300-interacting transactivator with ED-rich tail, are characterized by a conserved 32-amino acid sequence at the C-terminus. CITED proteins do not bind DNA directly and are thought to function as transcriptional co-activators. Length = 206

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 1e-04
 Identities = 61/312 (19%), Positives = 84/312 (26%), Gaps = 67/312 (21%)

Query: 144 LYPQPDAPRQNQHLILPRSLAEIPNRASTPAPAPAVAP------APVHARATAPATSPTQ 197
           LY   +   Q++  +  R +   P R    APAP          AP  AR       P +
Sbjct: 224 LYGASETYLQDEPFVERRVVISHPLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPE 283

Query: 198 DAKPRPRTPPTPFFPSVSSSSPTVGDNSTTNSGSGTSARADDKTNHHNTVIIAVVVTAAV 257
            A P     P       + +   +   +  +      A   ++ +  +  +  V      
Sbjct: 284 AAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLP-- 341

Query: 258 TFVAAALLFLCCSRFCRTGSGGRQNDERPLLS--LSLSDYSVGSGNSKEEKLDIGKFDGT 315
                        R  +    G     RP  +   SL D S G  + K   L   K    
Sbjct: 342 -------------RPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSA 388

Query: 316 ASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP 375
                                    P  R         P  P P  + P P   P     
Sbjct: 389 --------------------RHAATPFARGPGGDDQTRPAAPVPA-SVPTPAPTPV---- 423

Query: 376 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP----------- 424
            P S PPPP  P P+  P      +   P PPP+  PP P        P           
Sbjct: 424 -PASAPPPPATPLPSAEP-----GSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDAL 477

Query: 425 --RPPPPMPSGS 434
             R PP  P   
Sbjct: 478 RERRPPEPPGAD 489

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 1e-04
 Identities = 40/136 (29%), Positives = 44/136 (32%), Gaps = 19/136 (13%)

Query: 339  KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR------ 392
            +P   R        P    P G   P P  PPA  R  P   P  P   P  PR      
Sbjct: 2482 RPAEARFPFAAGAAPD---PGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIR 2538

Query: 393  ------PPPAPAPAPRAPPPPPKPGPPPP-PPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 445
                     A  P P  PP  P   P    PPPR  PAPRP  P    S+  RP    + 
Sbjct: 2539 GLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPR--PAPRPSEP-AVTSRARRPDAPPQS 2595

Query: 446  SSSSVGAGAEGDANAP 461
            +         GD   P
Sbjct: 2596 ARPRAPVDDRGDPRGP 2611

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 1e-04
 Identities = 33/136 (24%), Positives = 37/136 (27%), Gaps = 39/136 (28%)

Query: 346  GSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP------------------ 387
            G    G P  + P     P             P  P  PP P                  
Sbjct: 2471 GELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVH 2530

Query: 388  --------------------PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP- 426
                                PP P PP AP  AP    PPP+P P P  P     A RP 
Sbjct: 2531 PRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD 2590

Query: 427  PPPMPSGSKVPRPPLG 442
             PP  +  + P    G
Sbjct: 2591 APPQSARPRAPVDDRG 2606

Length = 3151

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 407
            P     P P E  +   P P +  P   P PPAP  P     A  A   P
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAP-APAPAKTAAPAAAAP 258

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (108), Expect = 1e-04
 Identities = 19/70 (27%), Positives = 20/70 (28%)

Query: 348 TLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 407
                P    P     P P     S      +   P PPP  A  P P PA      P P
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTP 428

Query: 408 PKPGPPPPPP 417
           P      PP 
Sbjct: 429 PANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (108), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
                  P    P P+  P      P +         P+P P  A  P P  P  P +P 
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIP-VPAEPTEPS 425

Query: 412 PPPPPPPRGGPAP 424
           P PP      P  
Sbjct: 426 PTPPANAANAPPS 438

Length = 620

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 28/115 (24%), Gaps = 12/115 (10%)

Query: 365 LPHEPPASLRPHPPSGPPPPPP---PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP--- 418
           L  EP  +    P  G P       P P  R   A   +                 P   
Sbjct: 356 LAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAA 415

Query: 419 ------RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
                 R    P  P P  +  +      G     +   A A  D+   +   +P
Sbjct: 416 AAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQP 470

Length = 830

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 385 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
            PPPP  +  P P    ++PPPP K      PPP   P  + PPP     K P PP
Sbjct: 5   SPPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPP---PVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 45.3 bits (108), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 435
                P   A     APA A  A      P P  P  P         P +P+G++
Sbjct: 86  DAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPA--AEVAADPDIPAGTE 138

Length = 464

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 13/50 (26%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
                 P     A    PA A A  A    P P  P  P       P  P
Sbjct: 85  SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134

Length = 464

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 14/39 (35%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
             +      PP PAP P    APAP A         P P
Sbjct: 51  VAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 45.6 bits (107), Expect = 1e-04
 Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 16/81 (19%)

Query: 335 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
           LP +   P +VGS L  +P +   PG                  + P P P P PA  PP
Sbjct: 77  LPSMDLGP-QVGSFLAQLPAMPSMPGLLGA--------------AAPVPAPAPAPAAAPP 121

Query: 395 PAPAPAPRAPPPPPKPGPPPP 415
            APAPA    P  P P    P
Sbjct: 122 AAPAPAA-DTPAAPIPDAVQP 141

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 45.2 bits (106), Expect = 1e-04
 Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 340 PPPGRVGSTLQ--------GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
           PPP  +G  +          +P +   P     L   P     P       P P P PAP
Sbjct: 57  PPPNPLGQLMNWPALPQDFQLPSMDLGPQVGSFLAQLPAMPSMPGLLGAAAPVPAPAPAP 116

Query: 392 RPPPAPAPAPRAPPPPPKPGPPPPPP 417
              P  APAP A   P  P P    P
Sbjct: 117 AAAPPAAPAP-AADTPAAPIPDAVQP 141

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN)

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 34/114 (29%), Positives = 37/114 (32%), Gaps = 17/114 (14%)

Query: 329 NENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP 388
           NE  Q L  L  PP  V         +       +    E   S   H        P  P
Sbjct: 109 NEEEQNLADLLTPPPDVDEDALKEANVNETESSTD----ESDRSSHSHEVRSKSNFPMGP 164

Query: 389 PAPRPPPAPAPAPRAPP------------PPPKPGPPPPPPPRGGPAPRPPPPM 430
           P+P  P  P   P  PP            PP   G PPP P  G P   PPPPM
Sbjct: 165 PSPWNPRFPPGPPPPPPGFGRHGEKPSGWPPFLSGWPPPFPL-GPPMIPPPPPM 217

This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs. Length = 264

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 45.8 bits (108), Expect = 1e-04
 Identities = 37/137 (27%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 343 GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP-----PPPPPPPPAPRPPPAP 397
           G+ G T +G    KP P +       P  S +P  P  P     P  P  P  PR    P
Sbjct: 547 GKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRP 606

Query: 398 A--PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAE 455
               +P+ P     P  P  P     P   PPP  PS  + P  P   K           
Sbjct: 607 TRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKP------- 659

Query: 456 GDANAPKTKLKPFFWDK 472
               +PK    P F +K
Sbjct: 660 --PKSPKPPFDPKFKEK 674

Length = 943

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 16/41 (39%), Positives = 16/41 (39%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 417
                 P       P  PP   P    PPPPP P PPPPP 
Sbjct: 157 SSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPPS 197

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 25/103 (24%), Positives = 30/103 (29%), Gaps = 14/103 (13%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKP-PPGRAEPLPHEPPA-------------SLRPHPPSGP 381
           P    P           PP +  PP  A P P +P A             +      +  
Sbjct: 480 PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539

Query: 382 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
              P P  AP P  A A  P   P PP+      P    G  P
Sbjct: 540 TLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 36/165 (21%), Positives = 49/165 (29%), Gaps = 6/165 (3%)

Query: 316 ASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP 375
           A F           E   +L P +P  G   S           PGR         A+ R 
Sbjct: 756 ALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRT 815

Query: 376 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 435
                     P   +    PA  P   A PPP +        P    A        +G +
Sbjct: 816 ASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPA---AAGGRARGKNGRR 872

Query: 436 VPRPPLGQKH---SSSSVGAGAEGDANAPKTKLKPFFWDKVLANP 477
            PRPP  +     ++    A A   A AP  + +P    K+   P
Sbjct: 873 RPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMP 917

Length = 1352

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 15/87 (17%)

Query: 390 APRPPPAPA-------------PAPRAPPPPPKPGPPPPPPPRGGPAPRP--PPPMPSGS 434
            P P P PA             PAP   P        PP  P    A  P  PP   +  
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 435 KVPRPPLGQKHSSSSVGAGAEGDANAP 461
               P    K + +++    +     P
Sbjct: 421 VPHTPESAPKLTRAAIPVDEKPKYTPP 447

Length = 585

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/67 (32%), Positives = 28/67 (41%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           PP+  P   V  T   +  +   P  +EP    P        P+GPP P  PP   R PP
Sbjct: 41  PPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPP 100

Query: 396 APAPAPR 402
            P P P+
Sbjct: 101 LPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 24/95 (25%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
             P+  P    EP+P  P  +    P   P P P P P P+P       P+    P +P 
Sbjct: 68  PEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127

Query: 412 PPPPPPPR-------GGPAPRPPPPMPSGSKVPRP 439
           P  P                    P+ S S  PR 
Sbjct: 128 PASPFENTAPARPTSSTATAAASKPVTSVSSGPRA 162

Length = 246

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 18/58 (31%), Positives = 20/58 (34%)

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
           G     P  PA    PAP+ A   P P P    P   P    PAP P       +  P
Sbjct: 201 GDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAP 258

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.1 bits (106), Expect = 2e-04
 Identities = 29/104 (27%), Positives = 38/104 (36%)

Query: 323 GTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPP 382
             A +   +G    P + P  +   T  G+P + PPP      P  PP +     P G  
Sbjct: 433 PKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSA 492

Query: 383 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 426
            P     A   PP P    +  P      P  PPPP   P+P P
Sbjct: 493 LPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEP 536

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 22/98 (22%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 350 QGMPPLKPPPGRAEPLPHEPP-ASLRPHPPSGPPP----PPPPPPAP-----RPPPAPAP 399
                       +    ++PP AS +P  P   PP    PP   P P     +P   PA 
Sbjct: 75  PANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAY 134

Query: 400 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
            P+   P  +P  P   P        P P   +     
Sbjct: 135 QPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAE 172

Length = 333

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 351 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 410
           G  P +     A P P     + R +             AP      A AP  P   P+P
Sbjct: 343 GGAPSEGVAAVAPPAPAPADLTQRLNRLE--KEVRSLRSAPTAAATAAGAP-LPDFDPRP 399

Query: 411 GPPPPP-PPRGGPAPRPPPPMPSGSKVP 437
             PP P P R   AP    P  + + + 
Sbjct: 400 RGPPAPEPARSAEAPPLVAPAAAPAGLA 427

Length = 504

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 23/95 (24%), Gaps = 3/95 (3%)

Query: 370 PASLRPHPPSGPPPPPPPPPAPR---PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 426
           PA+  P P   P    P   A     P  A AP      PPP    P   P    P    
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 427 PPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
                           +   S    A      N+ 
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSA 455

Length = 647

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 20/112 (17%), Positives = 27/112 (24%), Gaps = 16/112 (14%)

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHP--PSGPPPPPPP--------------PPAPRPPP 395
           +  L PP   A      PPA+       P+ P   P P                  R   
Sbjct: 48  LAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA 107

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 447
             AP  +AP  P +         R   A    P     +           + 
Sbjct: 108 PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 20/48 (41%)

Query: 389 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
           PA     AP  AP      P+P   P P PR   AP P    P+ + V
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAV 435

Length = 584

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 167 PNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNST 226
           P  A TP P+P  +PA     + APA S  ++  P   +       S S+S P+ G ++ 
Sbjct: 91  PTSAPTPTPSPPASPAS--GMSAAPA-SAVEEKSPSEESATATAPESPSTSVPSSGSDAA 147

Query: 227 TNSGSGTS 234
           +    G+ 
Sbjct: 148 STLVVGSE 155

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1)

 Score = 45.5 bits (107), Expect = 2e-04
 Identities = 20/86 (23%), Positives = 23/86 (26%)

Query: 364 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 423
           P          P P   P P P     P P    +      P        P   P G   
Sbjct: 621 PSSLSASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEVFMGYPFQSPHLGAPSGSPPGKDR 680

Query: 424 PRPPPPMPSGSKVPRPPLGQKHSSSS 449
             P  P P+ S  P+      H  SS
Sbjct: 681 DSPDLPRPTTSLHPKLLSAHHHPGSS 706

The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 45.0 bits (106), Expect = 2e-04
 Identities = 29/119 (24%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
             P RV +    +  +  P     P   + P      P S P   P     P P     P
Sbjct: 354 TAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDP 413

Query: 400 APRAPPPPPKPGPPPPPPPRGGPAPRPPPP--MP-SGSKVPRPPLGQKHSSSSVGAGAE 455
              +P  P  PG    P P G   P+P  P  MP S + +  P   Q+H          
Sbjct: 414 GLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHGHERKRKRGG 472

Length = 663

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 32/106 (30%), Positives = 35/106 (33%), Gaps = 8/106 (7%)

Query: 339 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA 398
           + PPG         PP  PPP      P   PA  R           P    P       
Sbjct: 428 RQPPGAPAPRRDNDPP--PPP---RARPGSTPACARRARAQRARDAGPEYVDPLGALRRL 482

Query: 399 PAPRAPPPPPKPGPPPPP--PPRGGPAPRPPPPMPSGSKVPRPPLG 442
           PA  APPP P   P P       GG  PR PP   +  +  RP  G
Sbjct: 483 PAGAAPPPEPAAAPSPATYYTRMGGGPPRLPPRNRAT-ETLRPDWG 527

Length = 694

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 19/44 (43%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
           P P   PP   PPP       A APA  APP  P P P P P  
Sbjct: 162 PRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPIA 205

Length = 540

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 27/122 (22%), Positives = 35/122 (28%), Gaps = 11/122 (9%)

Query: 307 LDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLP 366
                   T++  +  G  +      + L  L                  P    A PLP
Sbjct: 10  AAAAFEVITSAQLSRIGRIE---RELRELRSLVAEGAAGPVAKAAEQMAAPEAAEAAPLP 66

Query: 367 HEPPASLRPHPPSGPPPPPPPPPAPRP-----PPAPAPAPRAPPPPPKPGPPPPPPPRGG 421
               A+     P  PPP PP P           P+  PAP A P P +P  P        
Sbjct: 67  ---AAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFA 123

Query: 422 PA 423
            A
Sbjct: 124 AA 125

Length = 931

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 27/107 (25%), Gaps = 19/107 (17%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
                  P     AP P  A + A    PPP  P P             P    PS   V
Sbjct: 50  AAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG-------EAPAAEQPSA--V 100

Query: 437 PRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVW 483
           P P            A A  +   P     PF            +VW
Sbjct: 101 PAPS----------AAPAPAEPVEPSLAANPFAAAIEWLLGGRWVVW 137

Length = 931

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSG-PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
           P +PP G A+ +     A+     P     PP    PA  P  A  P P   PP   P  
Sbjct: 67  PTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPAGVPVAAQTPKP-VKPPKQPPAG 125

Query: 413 PPPPPPRGGPAPRPP 427
             P  P   P P+P 
Sbjct: 126 AVPAKPTPKPEPKPV 140

Length = 226

>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045)

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 33/144 (22%), Positives = 41/144 (28%), Gaps = 34/144 (23%)

Query: 323 GTAKSFNENGQVLPPLKPPPG--RVGSTLQGMP-------PLKPPPGRAEPLPHEPPASL 373
           G   SF E   V     PPPG      +  G+P         K  P + +          
Sbjct: 193 GRTNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEK 252

Query: 374 RPHP-PSGPPPPPPPPPAPR---------------------PPPAPAPAPRAPPP---PP 408
              P P     P  P  AP                           +P+  +P P    P
Sbjct: 253 SSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312

Query: 409 KPGPPPPPPPRGGPAPRPPPPMPS 432
           KP   P   PR   +PRP P  P 
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
            P G     PPP A   PPAP        PPP+   PP  PPRG   P
Sbjct: 905 APGGDAASAPPPGAG--PPAPPQ----AVPPPRTTQPPAAPPRGPDVP 946

Length = 991

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 18/74 (24%), Positives = 20/74 (27%), Gaps = 7/74 (9%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           P   P     +      P K P    E     P    RP  P  P  P   P   R    
Sbjct: 385 PSTRPKAAAAAN----IPPKEP--VRETATPPPVPP-RPVAPPVPHTPESAPKLTRAAIP 437

Query: 397 PAPAPRAPPPPPKP 410
               P+  PP P  
Sbjct: 438 VDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 32/131 (24%), Positives = 35/131 (26%), Gaps = 13/131 (9%)

Query: 343 GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPP-SGPPPP-------PPPPPAPRPP 394
           GR       +    P    A P P          P   GP P         P   A   P
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP 682

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP-----PPMPSGSKVPRPPLGQKHSSSS 449
             P     A   P  P P  PP   GG  P P       P P GS +   P         
Sbjct: 683 VRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPP 742

Query: 450 VGAGAEGDANA 460
               A+G  N 
Sbjct: 743 GAEQADGAENQ 753

Length = 753

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 44.3 bits (104), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 332 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHP-----PSGPPPPPP 386
            Q   P  P      S+  G  P  P   +  P+  + P+S  P P        PP P P
Sbjct: 251 QQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLP 310

Query: 387 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
               P     P+ +   P  PP+  P PP P    P  +PPP  P
Sbjct: 311 SQAQPHSHTPPSQSALQPQQPPREQPLPPAPS--MPHIKPPPTTP 353

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 44.3 bits (104), Expect = 3e-04
 Identities = 35/128 (27%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 323 GTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPG---RAEPLPHEPPASLRPHPPS 379
              + F      +PPL  P      +          P    R +PLP  P       PP+
Sbjct: 292 NPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPT 351

Query: 380 GPPPPPPPPPAPRPP--PAPAPAPRAP---PPPPKPGPPPPPPPRGGPAPRPPP--PMPS 432
            P P  P      PP    P+P P+ P   PPPP   P    P    P+  PPP   MP 
Sbjct: 352 TPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQ 411

Query: 433 GSKVPRPP 440
              +   P
Sbjct: 412 SQPLQSVP 419

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 44.3 bits (104), Expect = 3e-04
 Identities = 31/112 (27%), Positives = 34/112 (30%), Gaps = 12/112 (10%)

Query: 340 PPPGRVGSTLQGMPPLKP-PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA 398
           P P     T     P  P P  R     H  P    PH      P     P+  PP    
Sbjct: 240 PHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQ-QGPVFLQHPSSNPPQPFG 298

Query: 399 PAPRAPPPPPKPG--------PPPPPPPRGGPAPR--PPPPMPSGSKVPRPP 440
            A    PP P P         PP     +    PR  P PP PS   +  PP
Sbjct: 299 LAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPP 350

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 29/97 (29%), Positives = 31/97 (31%), Gaps = 11/97 (11%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           PP    PG    +    P     PG   P     P    P P     PP   P  P PP 
Sbjct: 189 PPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIPPV 248

Query: 396 APAPAPRAPPPPPKPGPP----------PPPPPRGGP 422
               AP  P PPP+P  P           P  PR  P
Sbjct: 249 IQYVAP-PPVPPPQPIIPIQHIRAVTGETPANPRDIP 284

Length = 582

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.2 bits (105), Expect = 3e-04
 Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 358 PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 417
           P      + +    +     P+  PPP P  P     P    A   P PPP    PP P 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQP---SAPKTKQAATTPSPPPAKASPPIPV 417

Query: 418 PRGGPAPRPPPPMPSGSKVPRPP 440
           P     P  P P P  +    PP
Sbjct: 418 P---AEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 31/78 (39%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 378 PSGPPP--PPPPPPAPRP------PPAPAPAPRAPPP----PPKPGPPPPPPPRGGPAPR 425
           PSG  P  P P   AP P      P APAPA   P P    PP   P  PPP       R
Sbjct: 76  PSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPAR 135

Query: 426 PPPPMPSGSKV--PRPPL 441
           P P  P  ++   P PPL
Sbjct: 136 PAPACPPSTRQCPPAPPL 153

Length = 280

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 43.8 bits (104), Expect = 3e-04
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 371 ASLRPHPPSGPPPP-PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
           A+L P   + P    PPP  AP     PA     P P            R     R   P
Sbjct: 49  AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAP 108

Query: 430 MPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
               ++ P  P  +  + ++    A   A AP+ ++  
Sbjct: 109 AAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPA 146

Length = 484

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           P     E    EP       P         P P       P P P  P P P+P P P P
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPE-PEPEPEPEPEPEP 118

Query: 417 PPRGGPAPRPPPPMP 431
            P  G A      +P
Sbjct: 119 EPEPGAATLKSVALP 133

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 20/52 (38%), Positives = 23/52 (44%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 417
           P  P     P PP     PPPP  +P     P P  ++PPPP      PPPP
Sbjct: 6   PPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 24/112 (21%), Positives = 32/112 (28%), Gaps = 8/112 (7%)

Query: 329 NENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPP 388
           N + +    L P      +T +    L   P R          S     P  P  P    
Sbjct: 28  NFDAERDDFLTPLGSTSEATSEDDDDL--YPPRETGSGGGVATSTIYTVPRPPRGPEQTL 85

Query: 389 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
             P   P       +   PP P P PP   RG  +PR      S   + +  
Sbjct: 86  DKPDSLP------ASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVN 131

Length = 580

>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein (LMP2) protein

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 30/118 (25%), Positives = 34/118 (28%), Gaps = 25/118 (21%)

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHPPS--GPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 409
           M PL     R+   P        P+ PS  G     P PP P    AP+           
Sbjct: 6   MQPLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPS----------- 54

Query: 410 PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
                 PPP GG                  PLGQ+  S   G G  G    P     P
Sbjct: 55  ----HRPPPYGGS--------NGDRHGGYQPLGQQDPSLYAGLGQNGGGGLPPPPYSP 100

This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus is a human Gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear. Length = 489

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 44.3 bits (104), Expect = 3e-04
 Identities = 33/128 (25%), Positives = 41/128 (32%), Gaps = 21/128 (16%)

Query: 334 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEP-PASLRPHPPSGPPPPPPPPPAPR 392
           V P  +P            P     P      P +P     +   P  P  P P    P+
Sbjct: 749 VEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ 808

Query: 393 PPPAPAPA------PRAPPPP-PKPGPPPPPPP----------RGG---PAPRPPPPMPS 432
            P AP P       P AP P   +P  P  P P          R G   P  +P  P+PS
Sbjct: 809 QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPS 868

Query: 433 GSKVPRPP 440
              +  PP
Sbjct: 869 LDLLTPPP 876

Length = 1355

>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 17/81 (20%)

Query: 339 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPP----PPPPAPRPP 394
              P    +T   +        +  PLP  P        PS P P      P PP P  P
Sbjct: 109 PQRPVMTRATSTTV--------QTTPLPQPPST-----APSYPGPQYQGYHPMPPQPGMP 155

Query: 395 PAPAPAPRAPPPPPKPGPPPP 415
             P      PP   +P  PPP
Sbjct: 156 APPYSLQYPPPGLLQPQGPPP 176

Shisa is a transcription factor-type molecule that physically interacts with immature forms of the Wnt receptor Frizzled and the FGF receptor within the endoplasmic reticulum to inhibit their post-translational maturation and trafficking to the cell surface. Length = 177

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 20/66 (30%)

Query: 364 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 423
              H   +S      S P    P P   +P  +      +  P PK   P PP     PA
Sbjct: 10  SQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPA 69

Query: 424 PRPPPP 429
                P
Sbjct: 70  ATTQTP 75

Length = 590

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.2 bits (104), Expect = 4e-04
 Identities = 44/211 (20%), Positives = 57/211 (27%), Gaps = 66/211 (31%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPP------ASLRPHPPSGPPPPPPPPP 389
           P +     R   T +G     PPP  A P     P      A+L   P + P PP PPPP
Sbjct: 259 PVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPP 318

Query: 390 APRPPPA-------------PAPAPRA---------------PPP----------PPKPG 411
           AP                  P P PR                PP            PK  
Sbjct: 319 APAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRA 378

Query: 412 PPP---------------------PPPPRGGPAPRPPP-PMPSGSKVPRPPLGQKHSSSS 449
             P                            P P   P P P+      PP       S+
Sbjct: 379 SLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSA 438

Query: 450 VGAGAEGDANAPKTKLKPFFWDKVLANPDNS 480
                +G A  P+ +      +    +PD++
Sbjct: 439 EPGSDDGPAPPPERQPPAPATEPAPDDPDDA 469

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.0 bits (104), Expect = 4e-04
 Identities = 34/161 (21%), Positives = 46/161 (28%), Gaps = 28/161 (17%)

Query: 308 DIGK-FDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQ-GMPPLKPPPGRA--- 362
           D+GK FD    FG       +     Q  P           + +            A   
Sbjct: 57  DVGKDFD----FGGETAKLSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTD 112

Query: 363 -EPLPH-EPPASLRPHPPSGPPPPPPPPPAPRPPPAPA----------------PAPRAP 404
            E +P  +P  SL    P   P PP  P +   P  PA                      
Sbjct: 113 PEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQL 172

Query: 405 PPPPKPGPPPP-PPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
           P PP+   P   PP +     + PP  P G   P     ++
Sbjct: 173 PQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQ 213

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR-----APPPP 407
           P    PP      P   P  +   P   P   P P P P+P P P P P       P   
Sbjct: 61  PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE 120

Query: 408 PKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 439
            KP  P P  P    AP  P    + +   +P
Sbjct: 121 VKPVEPRPASPFENTAPARPTSSTATAAASKP 152

Length = 246

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 29/96 (30%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 358 PPGRAEPLPHEPPASLRPHPPSGP-----PPPPPPPPAPR-------PPPAPAPAPRAPP 405
           PP       H  P  L    P  P     P P      P        P PA  P    P 
Sbjct: 47  PPTHTLQPHHHIPV-LPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPL 105

Query: 406 PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
            PP+P  P  P P   P P  PP  P     P  PL
Sbjct: 106 QPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPL 141

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 342 PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP 401
           PG    T+Q  PP  P        P  PP +        PP  P  PPA   P APA   
Sbjct: 48  PGLEDVTVQTTPPP-PASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENT 106

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.5 bits (102), Expect = 4e-04
 Identities = 22/86 (25%), Positives = 25/86 (29%), Gaps = 12/86 (13%)

Query: 375 PHPPSGPPPPPPPPP-----------APRPPPAPAPAPRAP-PPPPKPGPPPPPPPRGGP 422
           P+PP   P P  P             AP+P   P     A  P    P   P   P+  P
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQP 233

Query: 423 APRPPPPMPSGSKVPRPPLGQKHSSS 448
                 P P       P   Q H  S
Sbjct: 234 VQPAQQPTPQNPAQQPPQTEQGHKRS 259

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query: 390 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
               PP  APA + P PP +PG     P + G   +P    P   
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPG 134

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 390 APRPPPAPAPAPRAPPPPPKPGPPPP-PPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSS 448
           AP+PP  PAP P AP PPP P PP P P P   P     P +            +   ++
Sbjct: 6   APKPPEPPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAPKIREAQSKRGQKQQKAGGTA 65

Query: 449 SV 450
           S+
Sbjct: 66  SL 67

Length = 94

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 413
           P +    +  P   +     +       PPPP  PP  +      P    P P   P   
Sbjct: 2   PYQQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQ-QQQGHFMPPQPQPYPKQSPQQQ 60

Query: 414 PPPPP 418
            PP  
Sbjct: 61  QPPQF 65

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 384 PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP--PRGGPAPRPPPPMPSGSKVPRPP 440
                  P       P  + P     P PP  PP   +G   P  P P P  S   + P
Sbjct: 4   QQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQP 62

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 367 HEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP--PPKPG 411
           ++P +S  P  P   P PPPP       PA +P P+A  P  PP  G
Sbjct: 200 YKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSG 246

Length = 539

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 342 PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP 401
                     + PL      A P P+ PP    P PP   P PPPP             P
Sbjct: 46  YYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYM------ADP 99

Query: 402 RAPPPPPKPGPPP 414
           + PPPP  PGPP 
Sbjct: 100 QEPPPPY-PGPPQ 111

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 43.4 bits (102), Expect = 5e-04
 Identities = 13/60 (21%), Positives = 15/60 (25%), Gaps = 3/60 (5%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP 413
              P P      P  PP +    P +    P    P    P    P        PKP   
Sbjct: 16  QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKP---RRERKPKPASL 72

Length = 475

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 358 PPGRAEPLPHEPPASL-RPHPPSGPPP-PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
                        A L R    +GPP  P PP PA    P         P  P+  P PP
Sbjct: 4   GAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHP-------EFPERPRDAPAPP 56

Query: 416 PPPRGGPAPRPPPPMPSG 433
            PPR     R P P+   
Sbjct: 57  APPRATDGDRDPQPLADA 74

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 18/79 (22%), Positives = 26/79 (32%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
           P +G     PP   P   P P P+P A P       P        P+          S  
Sbjct: 77  PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136

Query: 437 PRPPLGQKHSSSSVGAGAE 455
              P     ++S++  G+E
Sbjct: 137 TSVPSSGSDAASTLVVGSE 155

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 43.5 bits (102), Expect = 5e-04
 Identities = 29/122 (23%), Positives = 36/122 (29%), Gaps = 13/122 (10%)

Query: 338 LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP--- 394
           L+P P     ++   P  + PPG   PL    P    P       P   P PAP  P   
Sbjct: 451 LEPGPLHDQHSMAPCPVAQLPPG---PLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVR 507

Query: 395 ---PAPAPAPRAPP----PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 447
               + +  P        P P P  P P P      P  P P     + P    G     
Sbjct: 508 PWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVR 567

Query: 448 SS 449
             
Sbjct: 568 ER 569

Length = 935

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 355 LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 409
             P  GR    P    AS  P P +GPP PP   P PR    PA  PR P  PP 
Sbjct: 895 FGPGTGRVATAPGGDAAS-APPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPA 948

Length = 991

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 43.6 bits (103), Expect = 5e-04
 Identities = 30/110 (27%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 332 GQVLPPL-KPPPGRVGSTLQGMPPLKPPPGRAE----PLPHEPPASLRPHP--PSGPPPP 384
            Q+ P + + P G       G PP      + +    PL   P  S+ P P  P GP  P
Sbjct: 376 MQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGW-PRMSMMPTPMGPGGPLRP 434

Query: 385 --PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
               P  A R P   A    A   PP      PP  +  P  +  P   S
Sbjct: 435 NGLAPMNAVRAPSRNAQN--AAQKPPMQPVMYPPNYQSLPLSQDLPQPQS 482

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 43.5 bits (102), Expect = 5e-04
 Identities = 26/121 (21%), Positives = 36/121 (29%), Gaps = 6/121 (4%)

Query: 341 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA-PAP 399
           P   + + +     +      AE +P  P A+     P+   P P   P P PPP    P
Sbjct: 334 PSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAA-----PAVVKPGPMEIPTPVPPPGLAIP 388

Query: 400 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDAN 459
           +  APP    P    P              +P         L  K  S       +G   
Sbjct: 389 SLVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSEDGKML 448

Query: 460 A 460
           A
Sbjct: 449 A 449

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 43.5 bits (102), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 414
           PP PP P P P P P P P P  P P P P   P
Sbjct: 920 PPSPPDPDPTPDPDPTPDPDP-TPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 7e-04
 Identities = 20/105 (19%), Positives = 24/105 (22%), Gaps = 11/105 (10%)

Query: 372 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
            L P            P  P P P P+P P    P           P     P      P
Sbjct: 358 GLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTP---SPPPAKASPP 414

Query: 432 SGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLAN 476
                            S    A      P   L+   W ++LA 
Sbjct: 415 IPVPAEPTE-------PSPTPPANAANAPPSLNLEE-LWQQILAK 451

Length = 620

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 375 PHPPSGPPPPP--PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
            +PP      P    P   + PP P   P+       P P P P P+  P  + PP   S
Sbjct: 9   QYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMP-PQPQPYPKQSPQQQQPPQFSS 67

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAP-PPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 438
           G  PP   P A     A    P  P    P P PP    P    A +PP P P+    P 
Sbjct: 121 GGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPT 180

Query: 439 P 439
           P
Sbjct: 181 P 181

Length = 418

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 43.0 bits (102), Expect = 7e-04
 Identities = 12/48 (25%), Positives = 13/48 (27%)

Query: 371 ASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
           AS     P+         PA     A   A  AP  P  P       P
Sbjct: 84  ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131

Length = 464

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 42.7 bits (100), Expect = 8e-04
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 403
           P  +  P  +E    EP        P   P PP P PAP    APA A   
Sbjct: 210 PAEEEAPAPSEA-GSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPV 259

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 13/53 (24%), Positives = 14/53 (26%)

Query: 388 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
                 PP PA A     PPP P           P     PP     + P   
Sbjct: 53  VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAEN 105

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.9 bits (101), Expect = 8e-04
 Identities = 44/247 (17%), Positives = 58/247 (23%), Gaps = 36/247 (14%)

Query: 169 RASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGDNSTTN 228
            A+T A AP  APAP          +      P                      +S + 
Sbjct: 418 AAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA 477

Query: 229 SGSGTSARADDKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTGSGGRQNDERPLL 288
           S   + A  D               T A    A A             +   + D     
Sbjct: 478 SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP------------AAASREDAPAAA 525

Query: 289 SLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGST 348
           +    +    +                A+  A  G A +       L  L+    RV S 
Sbjct: 526 APPAPEARPPT-------------PAAAAPAARAGGAAA------ALDVLRNAGMRVSSD 566

Query: 349 LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 408
                     P  A     +P A     P      P P   A      P  A RA     
Sbjct: 567 RGARAAAAAKPAAAPAAAPKPAA-----PRVAVQVPTPRARAATGDAPPNGAARAEQAAE 621

Query: 409 KPGPPPP 415
             G PPP
Sbjct: 622 SRGAPPP 628

Length = 830

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 357 PPPGRAEPLPHEPP-ASLRPHPPSGPPPPPPP-PPAPRPPPAPAPAPRAPPPPP-KPGPP 413
           P   R           + R  PP  P PP P     P  P  P  AP  P PP    G  
Sbjct: 7   PRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRATDGDR 66

Query: 414 PPPPPRGGPA 423
            P P     A
Sbjct: 67  DPQPLADALA 76

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10; Provisional

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 24/110 (21%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 374 RPHPPSGPPPPPPPPPAPRPPPAPAP---APRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 430
           R    + P PP         P  PAP    P  P       P  PP  +  P      P 
Sbjct: 52  RSKKENEPAPPSTMIATNTKPFHPAPIDVPPDPPAAQEAVQPTAPPSAQSEPERN--EPR 109

Query: 431 PSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNS 480
           P  + +     G +  S   G G          +       +V A  D S
Sbjct: 110 PEETPIFAYSSGDQGGSKRAGHGDTDRRQDDNREDNSLPAGEVSAENDLS 159

Length = 376

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.5 bits (101), Expect = 9e-04
 Identities = 19/108 (17%), Positives = 25/108 (23%), Gaps = 2/108 (1%)

Query: 334 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
            +PP    P    S      P         P    PPAS     P+ P P          
Sbjct: 369 EVPPQSAAP--AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR 426

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
                          +P       P      R     P+ S + + P 
Sbjct: 427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPA 474

Length = 647

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 9e-04
 Identities = 13/49 (26%), Positives = 14/49 (28%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
           P +     P   PAP           AP P P   P P        A R
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVR 436

Length = 584

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 42.8 bits (101), Expect = 9e-04
 Identities = 12/52 (23%), Positives = 13/52 (25%)

Query: 383 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
            P    PAP        +      P      P PPP     P  PP      
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRG 322

Length = 656

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 22/90 (24%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP-PPPPRGGPAP 424
           P+  P        +           P     PA A  + PP   PG P  P PP    +P
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 425 R----PPPPMPSGSKVPRPPLGQKHSSSSV 450
                PP P    S  P P      + S  
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPP 237

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 26/69 (37%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
           PP G     +   PP         P P EP A      P  P   P  PP+P  PPAPA 
Sbjct: 41  PPVGDPRPPVVDTPPPVSA-VWVLPPPSEPAAPPPDPEPPVPG--PAGPPSPLAPPAPAR 97

Query: 400 APRAPPPPP 408
            P  PPP P
Sbjct: 98  KPPLPPPRP 106

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 341 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP-HPPSGPPPPPPPPPAPRPPPAPAP 399
           P  +V + L   P  + P    +     PP+   P   P       P  P P+  P   P
Sbjct: 65  PLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPY-YP 123

Query: 400 APRAPPPPP--KPGPPPPPPPRGGPAP---RPPPPMPSGSKVPRPPL 441
            P  P PPP  +P    P PP   P     + PP  P   + P P  
Sbjct: 124 PPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQA 170

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.8 bits (100), Expect = 0.001
 Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 20/136 (14%)

Query: 337 PLKPPPGR--VGSTLQGMPPLKP--PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
           PL+  P +  V +  Q +PP     P       P + P +  P    G P   PPP  P 
Sbjct: 414 PLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPT 473

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP----------------PPMPSGSKV 436
             PA  P   +   PP    P      G   P PP                PP P  S  
Sbjct: 474 STPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPS 533

Query: 437 PRPPLGQKHSSSSVGA 452
           P P +    S +S  A
Sbjct: 534 PEPTVVNTPSHASQSA 549

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 19/77 (24%), Positives = 22/77 (28%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
               PPP +         P  P P    P P  PP        S   P   P  +  PPP
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579

Query: 396 APAPAPRAPPPPPKPGP 412
            P     +P     P  
Sbjct: 580 IPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 24/139 (17%), Positives = 31/139 (22%), Gaps = 26/139 (18%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPP-PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR-- 392
              +P P     +      +       A      P A+  P P + PP P    PA R  
Sbjct: 488 AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAG 547

Query: 393 ----------------------PPPAPAPAPRAPPPPPKPGPPPPPPPRGGP-APRPPPP 429
                                    A A    AP   PKP  P        P A      
Sbjct: 548 GAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGD 607

Query: 430 MPSGSKVPRPPLGQKHSSS 448
            P           +   + 
Sbjct: 608 APPNGAARAEQAAESRGAP 626

Length = 830

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 29/125 (23%), Positives = 34/125 (27%), Gaps = 13/125 (10%)

Query: 339 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPP---PPPPAPRPPP 395
           +P PG            +   G     P+  PAS  P       P     P     R   
Sbjct: 152 RPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDY 211

Query: 396 APAPAPRAPPP----PPKPGPPPPP--PPRGGPAPRPPPPMPS---GSKVPRPPLGQKHS 446
              P P    P      +P PPP      RGGP P      P        P P   Q   
Sbjct: 212 D-HPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAP 270

Query: 447 SSSVG 451
           +   G
Sbjct: 271 APGPG 275

Length = 617

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 42.1 bits (100), Expect = 0.001
 Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 389 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
            A  P  A APA  AP       P P P     PA   P    +  K P
Sbjct: 195 AAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP 243

Length = 547

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 14/50 (28%), Positives = 16/50 (32%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 426
            P+   P P          +    P A    P P P PP  P   PA R 
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 377 PPSGPPPPPPPPPA--------PRPPPAPAPAPRAPPPPPKPGPPPPPPPRG-GPAPRPP 427
             + P P  P  PA         R   A A AP   P PP P     P PR    A  PP
Sbjct: 6   RLARPAPADPARPARRRTPLAQLRRRDALAYAPPPRPEPPPPCDEDRPEPRADTRASDPP 65

Query: 428 PPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
           P  P+ +   +PP     S+ +  A A G A A 
Sbjct: 66  PEAPTDADPAQPPDDPDASAHT-AAIASGAAGAR 98

This family of genes is always found in type III secretion operons, althought its function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. Length = 201

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAP----PPPPKPGPPPPPPPRGGPAPRP 426
              P+           P  P A AP P  P    P PP    PP P P   P P P
Sbjct: 126 AAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181

Length = 418

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 369 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 417
            P + R   P   PPPPPPPP P  P      P    P         P 
Sbjct: 260 LPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 13/61 (21%), Positives = 17/61 (27%)

Query: 390 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 449
           A     APA A  A    P                 P  P    +  P  P G +  + +
Sbjct: 84  ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMVTMT 143

Query: 450 V 450
           V
Sbjct: 144 V 144

Length = 464

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 25/101 (24%), Positives = 28/101 (27%), Gaps = 16/101 (15%)

Query: 355 LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 414
           L+   G  EP P E   +         P P          P P        P P P   P
Sbjct: 106 LEKVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEP 165

Query: 415 PPPPRGG-------------PAPRPPP---PMPSGSKVPRP 439
                               PAP+PPP   P PS   V R 
Sbjct: 166 VDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRR 206

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.8 bits (100), Expect = 0.001
 Identities = 21/109 (19%), Positives = 30/109 (27%), Gaps = 1/109 (0%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
           Q + P +P            P   P P +    P+  PA  +P   +             
Sbjct: 399 QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTF-A 457

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
           P            P  +      P P        P P+   +K  RPPL
Sbjct: 458 PQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506

Length = 1355

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.8 bits (100), Expect = 0.001
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 1/113 (0%)

Query: 357 PPPGRAEPLPHEPPASLRPHP-PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
           PP    +  P +P  + +P P P    P   P P   P  +    P      P   P  P
Sbjct: 344 PPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQP 403

Query: 416 PPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPF 468
             P   PA   P   P  +  P  P  Q + + +      G+A   + +   F
Sbjct: 404 QQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTF 456

Length = 1355

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 383 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           PP PP P P P P P P P  P P P+P P   P
Sbjct: 920 PPSPPDPDPTPDPDPTPDPD-PTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 18/77 (23%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP-PPPRGGPAPRP 426
            P A         P P PPP  A +  PA        P       PP       GPA   
Sbjct: 52  SPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPT 111

Query: 427 PPPMPSGSKVPRPPLGQ 443
               P      + P+  
Sbjct: 112 IQTEPGQLYPVQVPVMV 128

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 370 PASLRPHPPSGP-PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 428
             +        P P  P  PP P   P P   P + PP      PPP     G    PPP
Sbjct: 123 LGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPP 182

Query: 429 PMPSGSKVPRPPLGQKHSSS 448
            +   +    P   +    +
Sbjct: 183 QV---TYQSVPVPNRIQRKT 199

Length = 475

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 153 QNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPFFP 212
           QN    +P   +   + A+TPAPA  V   P +++  A AT+P     P+      P   
Sbjct: 156 QNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQA 215

Query: 213 SVSSSSPTVGDNSTTNSGSGTSARADD 239
           +V +++ T    +            D 
Sbjct: 216 NVDTAA-TPAPAAPATPDGAAPLPTDQ 241

Length = 331

>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 17/64 (26%), Positives = 21/64 (32%)

Query: 351 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 410
           G+PPL    G   P  +    ++ P PP  P          R  P   P P         
Sbjct: 178 GLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAA 237

Query: 411 GPPP 414
           G PP
Sbjct: 238 GRPP 241

Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. Length = 401

>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 27/120 (22%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 320 AVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 379
           A G   +   + G V   L  P  R    +       PP   A P+P  P A+      +
Sbjct: 82  AEGANLQGARDAGLVPVELSTPVARAPQVID----TAPPNDVATPVPSVPEATAEAAAKA 137

Query: 380 GPPPPPPPPPAPRPPP---APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
           GP             P     +   RA     +   P   PP+   A     P+ SG +V
Sbjct: 138 GPQDDEADGEQADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRSGQRV 197

Length = 292

>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function (DUF1750)

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAP--PPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
           P+ P PP     +   PP P P       P  P+PG    PP R G    P     S
Sbjct: 200 PTIPLPPQMAGQSMYQPPGPYPNAMVGRQPFYPQPGAVAGPPKRRGGHKAPRGHRAS 256

This is a fungal domain of unknown function. Length = 669

>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 13/29 (44%), Positives = 13/29 (44%)

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPR 419
             P P P P P  PPP P P P P    R
Sbjct: 3   GEPGPKPGPTPTPPPPAPTPEPTPAKHER 31

This family consists mainly of the potato leaf roll virus readthrough protein. This is generated via a readthrough of open reading frame 3 a coat protein allowing transcription of open reading frame 5 to give an extended coat protein with a large c-terminal addition or read through domain. The readthrough protein is thought to play a role in the circulative aphid transmission of potato leaf roll virus. Also in the family is open reading frame 6 from beet western yellows virus and potato leaf roll virus both luteovirus and an unknown protein from cucurbit aphid-borne yellows virus a closterovirus. Length = 460

>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR 402
           P   P  R      +  AS +P   + PPP   P    R  P P   PR
Sbjct: 170 PANEPRTRRPLSAPDDEASPQPKSLATPPPVAAP---SRRTPRPRRKPR 215

Length = 226

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 21/86 (24%), Positives = 22/86 (25%), Gaps = 6/86 (6%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP----PPPPPPPPAPRPPP 395
              GR         P  P P         P A+    P   P     P P     P PP 
Sbjct: 860 AAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPG 919

Query: 396 APAP--APRAPPPPPKPGPPPPPPPR 419
            P P    R  PP     P P     
Sbjct: 920 GPDPRGGFRRVPPGDLHTPAPSAAAL 945

Length = 1352

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 27/86 (31%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPA-PRPPPAPAPAPRAPPPPPKPGPPPPP--PPRGGP 422
                 S    P    P PP  P A P   P   P P A PPP +   P  P   PRG P
Sbjct: 4   ARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCP 63

Query: 423 A----PRPPPPMP----SGSKVPRPP 440
           A        PP P      +    PP
Sbjct: 64  AGVTFSSSAPPRPPLGLDDAPAATPP 89

Length = 318

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 389 PAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSS 448
            +        P P+  PPPP P PP P P    P P PPPP P+ ++       Q  + S
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 449 SVG-AGAEGDANAPKTKLKPFFWDKV---LAN 476
           S      E    +P     P   DK    LA+
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPEEIDKAAKNLAD 606

Length = 620

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 16/70 (22%), Positives = 18/70 (25%), Gaps = 7/70 (10%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAP------APRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 430
               PP P P     R             AP A        P P   PR    P P P  
Sbjct: 351 AAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGA-PLPDFDPRPRGPPAPEPAR 409

Query: 431 PSGSKVPRPP 440
            + +     P
Sbjct: 410 SAEAPPLVAP 419

Length = 504

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 19/70 (27%), Positives = 20/70 (28%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           P  P  G  G    G  P  P    A       PA+  P       P      A  P PA
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 397 PAPAPRAPPP 406
            AP P     
Sbjct: 451 AAPQPAVRLN 460

Length = 598

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 359 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP 406
           P        +         PS   P P   PAP P P  AP P +  P
Sbjct: 388 PANLLHNAPQAAP-----APSAAAPEPKHQPAPEPRPVLAPTPASGEP 430

Length = 584

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 14/55 (25%), Positives = 15/55 (27%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
                A   P     +      S    P     AP PPP P   P  PP     G
Sbjct: 268 AAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRG 322

Length = 656

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 16/55 (29%), Positives = 18/55 (32%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
           PP+  P       A +  P    A    P PP    P PP     P P P    P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178

Length = 418

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 400 APRA---PPPPPKPGPPPPPPPRGGPAPRPPPP 429
            PRA   P P P+P PPPPPP    P   P  P
Sbjct: 260 LPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEP 292

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 41.9 bits (98), Expect = 0.002
 Identities = 16/27 (59%), Positives = 17/27 (62%)

Query: 407 PPKPGPPPPPPPRGGPAPRPPPPMPSG 433
           PP   PPPPPPP   P  +PPPP P G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31

Length = 2365

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 42.1 bits (99), Expect = 0.002
 Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 372 SLRPHPPSGPPPPPPP--PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
           ++                PPAP P PA   AP AP       P   P P
Sbjct: 42  AMLDEDLGAVAASAQAYAPPAPAPLPAALVAP-APAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 5/49 (10%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           E   ++     +  PP P P PA    PAP     A      P   P P
Sbjct: 46  EDLGAVAASAQAYAPPAPAPLPAALVAPAP-----AAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 41.7 bits (97), Expect = 0.002
 Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 381 PPPPPPP----PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
           P  P  P      AP P PAPAPA  APP  P P    P       AP P    P+
Sbjct: 94  PAMPSMPGLLGAAAPVPAPAPAPAA-APPAAPAPAADTP------AAPIPDAVQPA 142

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 16/45 (35%), Positives = 16/45 (35%)

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
           GP P P PP    PP          P  P P   PPP P   P  
Sbjct: 161 GPRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPIA 205

Length = 540

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 338 LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAP 397
             P  GRV +   G     PPPG   P P +        PP    PP  PP  P  PPA 
Sbjct: 895 FGPGTGRVATAPGGDAASAPPPGAGPPAPPQAVP-----PPRTTQPPAAPPRGPDVPPAA 949

Query: 398 A 398
            
Sbjct: 950 V 950

Length = 991

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 25/138 (18%), Positives = 35/138 (25%), Gaps = 15/138 (10%)

Query: 327 SFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPP 386
            ++ + Q  PP+   P          P  +PPP +A              P     P   
Sbjct: 48  PWDPSPQAPPPVAQLPQ---------PLPQPPPTQALQALPAGDQQQHNTP--TGSPAAN 96

Query: 387 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP---RPPLGQ 443
           PP     P  PA  P     P +  P   P          P   P+  +     +   G 
Sbjct: 97  PPATFALPAGPAG-PTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGA 155

Query: 444 KHSSSSVGAGAEGDANAP 461
             S            N  
Sbjct: 156 PASGQLPSQQQSAQKNDE 173

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21)

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 27/101 (26%), Positives = 29/101 (28%), Gaps = 24/101 (23%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRP-HPPSGPPPPPPPPPA--PRPPPAPAPAPRAP----- 404
              K    R       P     P   PSG P  P  PP        A + +P A      
Sbjct: 223 VASKGGNDRGVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSASPAALFGDMV 282

Query: 405 ----------------PPPPKPGPPPPPPPRGGPAPRPPPP 429
                             PP P  P PP     PAP PPPP
Sbjct: 283 YVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPP 323

Length = 326

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 14/63 (22%), Positives = 17/63 (26%), Gaps = 1/63 (1%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP-PPPRGGPAPRP 426
           + P   R             PPA    P P   PR    P +P  P P       P  + 
Sbjct: 110 QTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQA 169

Query: 427 PPP 429
              
Sbjct: 170 VEA 172

Length = 256

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 29/111 (26%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 356 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPP--PPPAPRPPPAPAPAPRAPPPPPKPGPP 413
                  E  P E      P  P G P  PP  P PAP P  A A A  A  P     P 
Sbjct: 101 SMSEPATENKPAEVTT---PVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157

Query: 414 PPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTK 464
              P     A   P    +  K  +     K ++      A+      KTK
Sbjct: 158 AKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTK 208

Length = 209

>gnl|CDD|221009 pfam11162, DUF2946, Protein of unknown function (DUF2946)

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 364 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 405
            LP   P  L     +   PPPPP   P     P+  PRAPP
Sbjct: 78  ALPAALPLLLALVRLAAAVPPPPPASLPPRSRWPSAQPRAPP 119

This family of proteins has no known function. Length = 119

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPA 400
           P +  PPP P PPAP PPPA  P 
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPPV 24

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|234797 PRK00575, tatA, twin arginine translocase protein A; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 6/41 (14%), Positives = 6/41 (14%)

Query: 383 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 423
                  A  P     P P                    PA
Sbjct: 52  AEASAAAAQAPYQVATPTPVQSQRVDPAAASGQDSTEARPA 92

Length = 92

>gnl|CDD|226435 COG3921, COG3921, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 24/107 (22%), Positives = 32/107 (29%), Gaps = 1/107 (0%)

Query: 335 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
           +  L+P P +         P +     AEP+  +     R    + P P   P     P 
Sbjct: 2   IHVLEPRPTQAAKADAATVPEQDVMPGAEPVSGQANEQKRIAEEAHPQPVARPSSTDDPV 61

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK-VPRPP 440
                 P  P   P      P    G P   P P  P     +P PP
Sbjct: 62  TPTEGKPVRPKGLPILALAGPVGELGQPMDLPAPANPGDPLALPEPP 108

Length = 300

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 28/214 (13%), Positives = 51/214 (23%), Gaps = 54/214 (25%)

Query: 358 PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 417
              + E        +                 A  P    A A  A     +P       
Sbjct: 46  EEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAAR 105

Query: 418 PRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANP 477
           P    A RP     +  K    P  +K    +   G  G     + +             
Sbjct: 106 PAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRR------------- 152

Query: 478 DNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLS 537
                                        + + +KKK    +  P+ + I +        
Sbjct: 153 ------------------------RRGRRRRRKKKKKQKPTEKIPREVVIPE-------- 180

Query: 538 IMLRALNVTLEEVCDALLEGNELPAELIQTLLKM 571
                  +T+ E+ + +       AE+I+ L K+
Sbjct: 181 ------TITVAELAEKM---AVKAAEVIKKLFKL 205

Length = 746

>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional

 Score = 41.4 bits (98), Expect = 0.002
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 387 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           PPP  +   APA A  AP    +   P  P
Sbjct: 369 PPPPIQVSAAPAAAAAAPAAKEEEKKPASP 398

Length = 509

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 383 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 430
           P PP PP   PPP P      PPP     PP     +     R    +
Sbjct: 259 PAPPQPPEEEPPPPP------PPPEDDDDPPEDEEEQDDAEDRALEEI 300

Length = 584

>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 360 GRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
           G   PLP     + +P P    P   P  P P   P P          P P    P
Sbjct: 50  GELVPLPG--TTATQPPPVVLTPWSDPRLPDPPHLPDPQTHSATAHRNPHPPLNSP 103

NC10 stands for Non-helical region 10 and is taken from human COL15A1. A mutation in this region in human COL18A1 is associated with an increased risk of prostrate cancer. This domain is cleaved from the precursor and forms endostatin. Endostatin is a key tumour suppressor and has been used highly successfully to treat cancer. It is a potent angiogenesis inhibitor. Endostatin also binds a zinc ion near the N-terminus; this is likely to be of structural rather than functional importance according to. Length = 291

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 41.2 bits (96), Expect = 0.003
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 367 HEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP------PPPPPRG 420
             P   + P     P  PPP P A   PP  +P    P P P+   P      P   P+ 
Sbjct: 177 GPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQR 236

Query: 421 GPAPRPP-PPMPSGSKVPRPPL-GQKHSSSS 449
            P+P PP  P  +  + P+PP    +H  SS
Sbjct: 237 LPSPHPPLQPQTASQQSPQPPAPSSRHPQSS 267

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 43/224 (19%), Positives = 64/224 (28%), Gaps = 31/224 (13%)

Query: 164 AEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTPPTPFFPSVSSSSPTVGD 223
           A       T A  P   P P    +    T P            T      + + PT G 
Sbjct: 206 ATPRPTPRTTAS-PETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGG 264

Query: 224 NSTTNSGSGTSARADDKTNHHNTV--IIAVVVTAAV-TFVAAALLFLCCSRFCRTGSGGR 280
                + +  +  A   + +  TV  II + + A++   V       C  R CR      
Sbjct: 265 GEAPPANATPAPEA---SRYELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRP 321

Query: 281 QNDERPLLSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKP 340
               RP   ++ S  +V                  A+   +G   K         PP  P
Sbjct: 322 ARIYRPPSPVAPSISAVNE----------------AALARLGDELKRH-------PPESP 358

Query: 341 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPP 384
              +  S+   +P L      +E  P     S  P  P GP   
Sbjct: 359 RRSKRRSSQTMVPSLTAISEESEA-PAVVELSRSPRRPGGPTAR 401

Length = 401

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 9/41 (21%), Positives = 10/41 (24%)

Query: 384 PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
             P PP   P   P   P  P              + G A 
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQ 130

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 20/99 (20%), Positives = 22/99 (22%), Gaps = 12/99 (12%)

Query: 347 STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR---------PPPAP 397
                 P    PP  A P     PA+    P            A R         P    
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 398 APAPRAPPPPPKPGPPP---PPPPRGGPAPRPPPPMPSG 433
           A AP AP                    P PR P    + 
Sbjct: 113 AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAA 151

Length = 484

>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 328 FNENGQVLPPLKPPPGRVG-STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPP--P 384
           FN+    +P + P   R G + + GMPP          +P+      RP P     P  P
Sbjct: 188 FNQMPPHMPGMPPNQMRPGFNPMPGMPPRPGFNQNPNMMPNMNRPGFRPQPGGFNHPGTP 247

Query: 385 PPPPPAPRP--PPAPAPAPRAPPPPPKPGPPP 414
             P    RP   P     P      P+ G PP
Sbjct: 248 MGPNMQQRPGFNPNQGMNPPPHMAGPRAGFPP 279

This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 12/76 (15%), Positives = 18/76 (23%)

Query: 370 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
            +S  P   S          + +  P  + +PR     P        P          P 
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60

Query: 430 MPSGSKVPRPPLGQKH 445
            PS +  P        
Sbjct: 61  PPSVTLPPAATTQTPQ 76

Length = 590

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 41.2 bits (96), Expect = 0.003
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 410
           PPS P P P P P P P P P P P  P P  +P
Sbjct: 920 PPSPPDPDPTPDPDPTPDPDPTPDPE-PTPAYQP 952

Length = 1250

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 14/71 (19%), Positives = 19/71 (26%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
           + P S            PP   A   P  P     AP  P  P P    P          
Sbjct: 113 QVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEA 172

Query: 428 PPMPSGSKVPR 438
           P + +  +  +
Sbjct: 173 PKVEAEKEKEQ 183

Length = 256

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 15/63 (23%), Positives = 19/63 (30%), Gaps = 1/63 (1%)

Query: 374 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRAP-PPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
           +       PP     P P  PP    AP  P  P P    P  P  +   AP+       
Sbjct: 122 QQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEK 181

Query: 433 GSK 435
             +
Sbjct: 182 EQR 184

Length = 256

>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 387 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
            PP    P  PAP     P  P   P PPPPP   P  R
Sbjct: 286 LPPEDGRPLRPAP----APARPVAAPAPPPPPDDTPRGR 320

Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 8/73 (10%)

Query: 382 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
              P  P A +   AP  A  A        P          AP        G  V  P +
Sbjct: 36  AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPA--------AAPAAAAAEAEGHVVTSPMV 87

Query: 442 GQKHSSSSVGAGA 454
           G  + + S  A  
Sbjct: 88  GTFYRAPSPDAPP 100

Length = 155

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 27/114 (23%), Positives = 29/114 (25%), Gaps = 13/114 (11%)

Query: 334 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
           V+P L    GR G  L        P          P   L P  P G   P  P  A  P
Sbjct: 312 VVPWLPDTEGREGDDLA-------PTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATP 364

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 447
             A  P  R    P              PA   P    +       P G  H  
Sbjct: 365 VDASLPDVRTGTAPTSLANVS----HADPAVAQPTQAAT--LAGAAPKGATHLM 412

Length = 694

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (95), Expect = 0.004
 Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
              K PP    S     PP  P P   +P    PP +  P PP+        P      P
Sbjct: 519 NTAKTPPPPQKSP----PPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPA---QIP 571

Query: 396 APAPAPRAPPPPPKPGPPPPPPP 418
           A +  P   P  P P P     P
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 19/88 (21%), Positives = 21/88 (23%), Gaps = 13/88 (14%)

Query: 340 PPPGRVG----STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           P   R        ++      PP     P P  P           P  P  P  AP PP 
Sbjct: 7   PRAARRSFDYARLMRRAARAGPPG---TPAPPGPAEDA------HPEFPERPRDAPAPPA 57

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPA 423
            P        P P          R   A
Sbjct: 58  PPRATDGDRDPQPLADALAEAMARAAAA 85

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 16/46 (34%), Positives = 16/46 (34%)

Query: 388 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 433
                PP APA  P APP  P  G   P     G  P    P P  
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPGS 135

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 40.6 bits (96), Expect = 0.004
 Identities = 12/39 (30%), Positives = 12/39 (30%)

Query: 385 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 423
                AP    APA A  A P P    P       GG  
Sbjct: 81  AAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGV 119

Length = 547

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 22/42 (52%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 364 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP 405
           P P EPPA   P PP+  PPPPP PPAP P P   P     P
Sbjct: 7   PKPPEPPA---PLPPAPVPPPPPAPPAPVPEPTVKPVNAEAP 45

Length = 94

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 19/79 (24%), Positives = 21/79 (26%), Gaps = 9/79 (11%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
           P P P PPP P PP  P P      P            +      P   M    +   P 
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQ-----IPEELMFDAVEADLPD 321

Query: 441 ----LGQKHSSSSVGAGAE 455
                 Q        AG E
Sbjct: 322 NILATLQTVQRRRGRAGGE 340

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 9/39 (23%)

Query: 349 LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPP 387
           +  +PP  PPP      P  PP      PPS PPPPPPP
Sbjct: 1   MASLPPGNPPP------PPPPPGF---EPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 390 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
           AP    A AP P A PP P   P   PPPR     +PP   P G  VP
Sbjct: 905 APGGDAASAPPPGAGPPAP---PQAVPPPRT---TQPPAAPPRGPDVP 946

Length = 991

>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 19/53 (35%), Positives = 21/53 (39%)

Query: 359 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
            GR  P P   P + RP         P P     PPP  AP+ R P P  KP 
Sbjct: 163 VGRRTPGPANEPRTRRPLSAPDDEASPQPKSLATPPPVAAPSRRTPRPRRKPR 215

Length = 226

>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function unknown]

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 28/142 (19%), Positives = 41/142 (28%), Gaps = 20/142 (14%)

Query: 332 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
            +   P+ P  GR+ +        K P G+      +   ++    P  P       PA 
Sbjct: 405 SEAWAPVSPVTGRLDAF-----EWKAPTGQLAHPIEDRDEAIMAPLPEAPAKSAIEEPAD 459

Query: 392 RPPP-APAPAPRAPPPPPKPGPPPPPP---PRGGPAP-RPPPPMPSGSKVPRPPLGQKHS 446
              P A A                P P   P   PA  +   P     + P  P      
Sbjct: 460 ELEPVAEAAETEGKGTDRSARAVKPIPVIAPAAYPASAKTAEPAGFFGRPPDDP------ 513

Query: 447 SSSVGAGAEGDANAPKTKLKPF 468
               G   +G A    T+L+ F
Sbjct: 514 ----GVRRDGAAEKRATRLRLF 531

Length = 531

>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 29/108 (26%), Positives = 33/108 (30%), Gaps = 9/108 (8%)

Query: 345 VGSTLQGMPPLKPPPGRAEP--------LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           V    Q M   K PP    P        LP+   + L P     P   PP    P  P  
Sbjct: 86  VSHKHQDMGYYKGPPYSGYPFLMLPNPYLPNGSLSPLPPSSNKVPVVQPPHHVHPLTPLI 145

Query: 397 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP-PLGQ 443
                   P  P P  P    P+ G    P PP  S      P  +GQ
Sbjct: 146 TYSNEHFSPGTPPPHLPYDVDPKTGIPRPPHPPDISPFYPLSPGGVGQ 193

This region tends to appear at the N-terminus of proteins also containing DNA-binding HMG (high mobility group) boxes (pfam00505) and appears to bind the armadillo repeat of CTNNB1 (beta-catenin), forming a stable complex. Signaling by Wnt through TCF/LCF is involved in developmental patterning, induction of neural tissues, cell fate decisions and stem cell differentiation. Isoforms of HMG T-cell factors lacking the N-terminal CTNNB1-binding domain cannot fulfill their role as transcriptional activators in T-cell differentiation. Length = 200

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 19/109 (17%), Positives = 27/109 (24%), Gaps = 7/109 (6%)

Query: 362 AEPLPHEP---PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
            + LP       A       + P   P   P P+  P  A          K      P  
Sbjct: 196 GDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAA 255

Query: 419 RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
               A +P P      K       Q  ++ +   G      A    + P
Sbjct: 256 NAAKAAKPEPMPDDQQK----EAEQLQAAIAQAIGGVAGKLAEGVTVTP 300

Length = 423

>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing protein 1

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 20/85 (23%), Positives = 23/85 (27%), Gaps = 4/85 (4%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPH--PPSGPPPPPPPPPAPRPPPAPAPAPRAPP--PPPK 409
                      L   P    R    PP  PP   P   A     +P  +P +P    P  
Sbjct: 297 QASLEESWQPHLARAPKGDGRGLHDPPLSPPLAAPESTAEWVVESPVSSPASPLESSPSL 356

Query: 410 PGPPPPPPPRGGPAPRPPPPMPSGS 434
           PG      P   PA    P    G 
Sbjct: 357 PGSLTDLSPASLPAVHSLPSSTPGL 381

Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels. Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	921
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	100.0
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	100.0
PF02181	370	FH2: Formin Homology 2 Domain; InterPro: IPR015425	100.0
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	100.0
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	100.0
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	100.0
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.98
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	98.69
PHA03247	3151	large tegument protein UL36; Provisional	98.41
PHA03247	3151	large tegument protein UL36; Provisional	98.29
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	97.75
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	97.43
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	96.86
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	95.83
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	94.61
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	94.08
PHA03291	401	envelope glycoprotein I; Provisional	92.95
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	91.49
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	90.53
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	87.95
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	85.68
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	84.08
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	82.98
KOG4672	487	consensus Uncharacterized conserved low complexity	82.01
PF10873	155	DUF2668: Protein of unknown function (DUF2668); In	81.71
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	81.69
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	81.53

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=3.5e-68  Score=602.03  Aligned_cols=380  Identities=28%  Similarity=0.412  Sum_probs=335.8

Q ss_pred             CCCCCCCCCcCccccceeccC-CCCCccccccccCccccc--hHHHHhhhcccccccccc----ccCCCCCCCCcccccc
Q 002439          456 GDANAPKTKLKPFFWDKVLAN-PDNSMVWHQIKSGSFQFN--EEMIETLFGYSEKSKNEK----KKGSSLDTGPQYIQII  528 (921)
Q Consensus       456 ~~~~~Pk~klK~l~W~KI~~~-~~~~TIW~~i~~~~~~ld--~e~lE~lF~~~~~~k~~~----kk~~~~~~~~~~v~lL  528 (921)
                      .....|+..||+++|.+|... ..++++|-.++++.+.-|  +..|+.-|+.+.+.+.+.    .|.+..+++.+...||
T Consensus       617 KK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~il  696 (1102)
T KOG1924|consen  617 KKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRIL  696 (1102)
T ss_pred             cccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheec
Confidence            566788999999999999764 468899999998877543  356777798873332211    1112235667788999


Q ss_pred             chHHHhhHHHHHhhcCCCHHHHHHhhhcCC--CCcHHHHHHHHhhCCCHHHHHHHhhhcCCCCCCChHHHHHHHHhCCcc
Q 002439          529 DQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPF  606 (921)
Q Consensus       529 D~KraqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~gd~~~L~~aE~Fl~~l~~Ip~  606 (921)
                      |.|.|||++|+|+.|+++++||+.+|+++|  .|++.+|++|++.+|..|-+..|+++....+.|.+.|||...|..|.+
T Consensus       697 DsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkr  776 (1102)
T KOG1924|consen  697 DSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKR  776 (1102)
T ss_pred             chHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhccc
Confidence            999999999999999999999999999987  599999999999999999999999998888999999999999999999


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeecccccccccccc
Q 002439          607 SFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG  686 (921)
Q Consensus       607 ~~~RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks  686 (921)
                      +..||.+++|+.+|.|.+++|++.|..+..||+|||+|+.|.+||++||.+|||||+|+...+|+||.|+.|.||.|||+
T Consensus       777 L~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKs  856 (1102)
T KOG1924|consen  777 LRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKS  856 (1102)
T ss_pred             cChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhc
Q 002439          687 VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID  766 (921)
Q Consensus       687 ~d~k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd  766 (921)
                      +|+|+||||||++.+.+                                    .|++     +..|.+||++|.+|++++
T Consensus       857 aDqk~TLLHfLae~~e~------------------------------------kypd-----~l~F~ddl~hv~kaSrvn  895 (1102)
T KOG1924|consen  857 ADQKTTLLHFLAEICEE------------------------------------KYPD-----ILKFPDDLEHVEKASRVN  895 (1102)
T ss_pred             cchhhHHHHHHHHHHHH------------------------------------hChh-----hhcchhhHHHHHhhcccc
Confidence            99999999999975432                                    2332     346888999999999999


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 002439          767 ADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEG  846 (921)
Q Consensus       767 ~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~  846 (921)
                      ++.+...+..+...+.+.+..+....-.-.++|.|.++|..|.++|.+++..|....-+|+.+++++.+||.-|++|...
T Consensus       896 ad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysm  975 (1102)
T KOG1924|consen  896 ADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSM  975 (1102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcH
Confidence            99999999999999888776665443334578899999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHhhhhhhhh
Q 002439          847 LRLFTIVRDFFIMLDKACKQVKDAPKKSTK  876 (921)
Q Consensus       847 ~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k  876 (921)
                      ++||+.+++|-.+|..|.+|+.+.++.++|
T Consensus       976 EEFFaDi~tFrnaf~ea~~en~krRee~Ek 1005 (1102)
T KOG1924|consen  976 EEFFADIRTFRNAFLEAVAENEKRREEEEK 1005 (1102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887776663

>smart00498 FH2 Formin Homology 2 Domain

Probab=100.00  E-value=2.6e-64  Score=581.25  Aligned_cols=375  Identities=35%  Similarity=0.526  Sum_probs=332.1

Q ss_pred             CCCCCCCcCccccceeccCCCCCccccccccCccccchHHHHhhhccccccccccc-----cCCCCCCCCccccccchHH
Q 002439          458 ANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKK-----KGSSLDTGPQYIQIIDQKK  532 (921)
Q Consensus       458 ~~~Pk~klK~l~W~KI~~~~~~~TIW~~i~~~~~~ld~e~lE~lF~~~~~~k~~~k-----k~~~~~~~~~~v~lLD~Kr  532 (921)
                      ...|+.+||++||+||..+++.+|||+++++.. ++|+++||++|+++...+...+     +.....++.+.++|||+||
T Consensus         3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr   81 (432)
T smart00498        3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR   81 (432)
T ss_pred             CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence            357899999999999999989999999999875 7899999999998643221111     1111234567899999999


Q ss_pred             HhhHHHHHhhcCCCHHHHHHhhhcCC--CCcHHHHHHHHhhCCCHHHHHHHhhhcCC-CCCCChHHHHHHHHhCCcchhh
Q 002439          533 AQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGE-LSQLGPAERFLKALVDIPFSFK  609 (921)
Q Consensus       533 aqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~gd-~~~L~~aE~Fl~~l~~Ip~~~~  609 (921)
                      +|||+|+|++|++++++|++||+++|  .|+.|.|+.|++++||.||+..|+.|.|+ .+.|+++|||++.|++||+|..
T Consensus        82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~  161 (432)
T smart00498       82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE  161 (432)
T ss_pred             HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999998  59999999999999999999999999887 8999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeeccccccccccccCCC
Q 002439          610 RLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDG  689 (921)
Q Consensus       610 RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~  689 (921)
                      ||+||+|+.+|++.+.++++.|.++..||++|++|+.|+.||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus       162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~  241 (432)
T smart00498      162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN  241 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhchhh
Q 002439          690 KTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADS  769 (921)
Q Consensus       690 k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~  769 (921)
                      ++|||||||+.|.++++                   +                      +..|.+||..|..|++++ +.
T Consensus       242 k~tLLhylv~~i~~~~p-------------------~----------------------~~~f~~el~~v~~askvs-~~  279 (432)
T smart00498      242 KTTLLHFLVKIIRKKYP-------------------D----------------------LLDFYSDLHHLDKAKVNL-EQ  279 (432)
T ss_pred             CccHHHHHHHHHHHhCh-------------------h----------------------hccchhhhccHHHHHHHH-HH
Confidence            99999999998865431                   1                      124678899999999999 99


Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q 002439          770 LTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRL  849 (921)
Q Consensus       770 L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~f  849 (921)
                      |..++.+|..++..++..+..-......++.|..+|..|+..|+.++..|....+++...+++++.|||++..+..+.+|
T Consensus       280 l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~ef  359 (432)
T smart00498      280 LEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEF  359 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            99999999999888765433211122345889999999999999999999999999999999999999999988788999


Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhh
Q 002439          850 FTIVRDFFIMLDKACKQVKDAPKKST  875 (921)
Q Consensus       850 F~iv~dFl~~l~ka~kEv~~~~kr~~  875 (921)
                      |.+|.+|+..|.+|++|+.+..+.++
T Consensus       360 F~~f~~F~~~f~ka~~en~~~~~~e~  385 (432)
T smart00498      360 FKDFNEFLKEFSKAAEENIKKEEEEE  385 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876554443

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []

Probab=100.00  E-value=8.5e-61  Score=542.95  Aligned_cols=364  Identities=37%  Similarity=0.563  Sum_probs=307.3

Q ss_pred             CCCCCCCCcCccccceeccCCCCCccccccccCc--cccchHHHHhhhccccccccccccCCCCCCCCccccccchHHHh
Q 002439          457 DANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGS--FQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQ  534 (921)
Q Consensus       457 ~~~~Pk~klK~l~W~KI~~~~~~~TIW~~i~~~~--~~ld~e~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~lLD~Kraq  534 (921)
                      ....|+.++|++||++|......+|||++++...  ..+|.+.+|++|+.+........+.....++++.++|||+||+|
T Consensus         3 ~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~~~~~~~~~~~~~~iLd~kr~~   82 (370)
T PF02181_consen    3 KKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKKKQASKKKKKKKISILDPKRSQ   82 (370)
T ss_dssp             -----SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH----HCCCCTTCCESSS-HHHHH
T ss_pred             CCCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccccccccccccccccccchHHHH
Confidence            3457899999999999999899999999998765  46789999999998743322211122345667899999999999


Q ss_pred             hHHHHHhhcCCCHHHHHHhhhcCCC--CcHHHHHHHHhhCCCHHHHHHHhhhcCCCCCCChHHHHHHHHhCCcchhhHhH
Q 002439          535 NLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLE  612 (921)
Q Consensus       535 Ni~I~L~~lk~s~eei~~aI~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~~gd~~~L~~aE~Fl~~l~~Ip~~~~RL~  612 (921)
                      ||+|+|+++++++++|++||..+|.  |+.|.|+.|++++||.||+..+++|.++...|+++|+|++.|++||+++.||+
T Consensus        83 ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~~rl~  162 (370)
T PF02181_consen   83 NIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRLKERLE  162 (370)
T ss_dssp             HHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTHHHHHH
T ss_pred             HHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998874  99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeeccccccccccccCCCCee
Q 002439          613 ALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTT  692 (921)
Q Consensus       613 ~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~t  692 (921)
                      ||+|+.+|++++.++.+.|+.+..||++|++|..|+.+|++||++|||||+|+.+|+|.||+|++|.||.+||++|+++|
T Consensus       163 ~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~t  242 (370)
T PF02181_consen  163 ALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKTT  242 (370)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhchhhHhH
Q 002439          693 LLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTG  772 (921)
Q Consensus       693 LLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~~  772 (921)
                      ||||||+.+.++                   ..+                      +..+.+||..|..|+++|++.|..
T Consensus       243 LL~~l~~~~~~~-------------------~~~----------------------~~~~~~eL~~v~~a~~~~~~~l~~  281 (370)
T PF02181_consen  243 LLHYLVKIVEEK-------------------FPD----------------------LLDLEDELSSVEKASKVSLDELEQ  281 (370)
T ss_dssp             HHHHHHHHHHTT-------------------SGG----------------------GGGHHHHTTTHHHCCTS-HHHHHH
T ss_pred             HHHHHHHHHHhc-------------------ChH----------------------HhccHHHHhhHHhhhhhhHHHHHH
Confidence            999999876432                   111                      224668899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchh
Q 002439          773 TVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTI  852 (921)
Q Consensus       773 ~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~k~~~~~fF~i  852 (921)
                      ++.+|..++..++..++......+.++.|...|..|++.++.++..|.+.+.++.+.+++++.|||++..+..+++||++
T Consensus       282 ~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~  361 (370)
T PF02181_consen  282 DIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKI  361 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            99999999999998887554445667899999999999999999999999999999999999999998888889999999


Q ss_pred             HHHHHHHHH
Q 002439          853 VRDFFIMLD  861 (921)
Q Consensus       853 v~dFl~~l~  861 (921)
                      |.+|+.+|+
T Consensus       362 l~~F~~~fk  370 (370)
T PF02181_consen  362 LSQFIDMFK  370 (370)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            999999885

Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=3.5e-49  Score=489.91  Aligned_cols=428  Identities=39%  Similarity=0.574  Sum_probs=367.6

Q ss_pred             CCCCCCcCccccceeccCCCCCccccccccCccccch---HHHHhhhccccccc--cc--cccCCCCCCCCccccccchH
Q 002439          459 NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNE---EMIETLFGYSEKSK--NE--KKKGSSLDTGPQYIQIIDQK  531 (921)
Q Consensus       459 ~~Pk~klK~l~W~KI~~~~~~~TIW~~i~~~~~~ld~---e~lE~lF~~~~~~k--~~--~kk~~~~~~~~~~v~lLD~K  531 (921)
                      ..|+.+++++||+++..+....++|+.+....+.+|.   +++|.+|++.....  ..  ...+.......+.+.++|.+
T Consensus       390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r  469 (833)
T KOG1922|consen  390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR  469 (833)
T ss_pred             CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence            5789999999999999999999999999999888887   99999998762211  11  01111111222678999999


Q ss_pred             HHhhHHHHHhhcCCCHHHHHHhhhcCCC--CcHHHHHHHHhhCCCHHHHHHHhhhcCCCCCCChHHHHHHH-HhCCcchh
Q 002439          532 KAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKA-LVDIPFSF  608 (921)
Q Consensus       532 raqNi~I~L~~lk~s~eei~~aI~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~~gd~~~L~~aE~Fl~~-l~~Ip~~~  608 (921)
                      ++||++|+|+.+++..++++++|++++.  +..++|+.|.++.|+.+|...++.|.++...|+..|+|+.+ +..|++++
T Consensus       470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~  549 (833)
T KOG1922|consen  470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFE  549 (833)
T ss_pred             CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHH
Confidence            9999999999999999999999999876  99999999999999999999999999988999999999887 56799999


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeeccccccccccccCC
Q 002439          609 KRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVD  688 (921)
Q Consensus       609 ~RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d  688 (921)
                      .|+++++|+..|.+++..+...+.+++.||+++++++.|.+++++||..|||||.|+.||+|+||+|++|.||.|+|+.+
T Consensus       550 ~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~  629 (833)
T KOG1922|consen  550 ERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSD  629 (833)
T ss_pred             HHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhchh
Q 002439          689 GKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDAD  768 (921)
Q Consensus       689 ~k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~d  768 (921)
                      +++++||+++.++++.+|.+..                         ...+.|+.+|++.|.+|..||.+|++|+++|++
T Consensus       630 ~~~~~l~~~~~e~~~~~~~r~~-------------------------~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~  684 (833)
T KOG1922|consen  630 GKTTLLHFVVPEVVRSEGKRSV-------------------------IDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLE  684 (833)
T ss_pred             ccchhhhhhHHHHHHhhccccc-------------------------hhhhhhhhccchhhhcccchhcccchhhccCHH
Confidence            9999999999999988765532                         134568889999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHHHh-hhhcc-cCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccc
Q 002439          769 SLTGTVSKLGHALLKTRDFLN-TDMKN-LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG-KDE  845 (921)
Q Consensus       769 ~L~~~v~kL~~~l~k~~~~l~-~~~k~-~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~-k~~  845 (921)
                      .+..++.+|..++.++++.+. ..... ...++.|...|..|+..|+.++..+..++++++.+++.+++|||++.. +..
T Consensus       685 ~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~  764 (833)
T KOG1922|consen  685 VLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEIT  764 (833)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence            999999999999999999885 33322 346789999999999999999999999999999999999999999984 566


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCCCCCCCchhhhhhchhhhhccCCCCCCC
Q 002439          846 GLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSD  918 (921)
Q Consensus       846 ~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~k~e~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~  918 (921)
                      ..++|.++++|+.+++++|+|++++++++...   +.   ...+. ......+....++.+..+|.-++.+++
T Consensus       765 ~~~~f~~~r~fl~~~~~~~~e~~~~~~k~~~~---~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (833)
T KOG1922|consen  765 PEQVFSILRDFLRTFDKAHEENKKAEEKEKTY---EA---EEKRA-NKEAELEELKNISQAVSKRTSDSESSL  830 (833)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cc---ccccc-ccccccccccccccccccccccccccc
Confidence            78999999999999999999999999887533   10   00011 111233455666777777766554443

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=3.4e-49  Score=451.80  Aligned_cols=369  Identities=23%  Similarity=0.313  Sum_probs=320.8

Q ss_pred             CCCCCCCCCCCcCccccceeccCCCCCccccccccCcc--ccchHHHHhhhccccccccc----cccCCCCCCCCccccc
Q 002439          454 AEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKNE----KKKGSSLDTGPQYIQI  527 (921)
Q Consensus       454 ~~~~~~~Pk~klK~l~W~KI~~~~~~~TIW~~i~~~~~--~ld~e~lE~lF~~~~~~k~~----~kk~~~~~~~~~~v~l  527 (921)
                      +-......|.++-.++|..+..+.+.+|+++++.+..+  ++|++++|+.|.....+...    ..+.....+..+++++
T Consensus       360 ~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~tL  439 (830)
T KOG1923|consen  360 TIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKRTL  439 (830)
T ss_pred             hhcCCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhhhH
Confidence            34555667778889999999999999999999987765  47999999999763111110    0111123355788999


Q ss_pred             cchHHHhhHHHHHhhcCCCHHHHHHhhhcCC--CCcHHHHHHHHhhCCCHHHHHHHhhhcC---CCCCCChHHHHHHHHh
Q 002439          528 IDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNG---ELSQLGPAERFLKALV  602 (921)
Q Consensus       528 LD~KraqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~g---d~~~L~~aE~Fl~~l~  602 (921)
                      +|.+|++|++|.++ +.+..++|+.||...|  .|..+.++.|.+++||++|...+++|..   +...|++.|+|++.+.
T Consensus       440 le~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~ls  518 (830)
T KOG1923|consen  440 LEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLS  518 (830)
T ss_pred             HHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhh
Confidence            99999999999999 9999999999998776  6999999999999999999999998864   4578999999999999


Q ss_pred             CCcchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeecccccccc
Q 002439          603 DIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLS  682 (921)
Q Consensus       603 ~Ip~~~~RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~  682 (921)
                      .|.++++||..|-|+.+|.+.+.-+.+++..++.|.+.+++|++|+.+|++||++|||||.+. ||.++||+|.+|.-|.
T Consensus       519 kIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~k-Rg~ayGFklqslD~ll  597 (830)
T KOG1923|consen  519 KIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSK-RGAAYGFKLQSLDSLL  597 (830)
T ss_pred             hhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcc-cccccceeccccHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999986 8999999999999999


Q ss_pred             ccccCCCCeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHh
Q 002439          683 DVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKA  762 (921)
Q Consensus       683 d~Ks~d~k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kA  762 (921)
                      ++|++|.+.|||||++..+.+                                    .|..     +..|.+||..|+||
T Consensus       598 ~tkStDr~~tLlh~iv~~i~e------------------------------------klp~-----l~~F~~el~~~eKa  636 (830)
T KOG1923|consen  598 DTKSTDRSMTLLHYIVLTIAE------------------------------------KLPA-----LQLFFSELDFVEKA  636 (830)
T ss_pred             hccCCccceeeeehhhHHHHH------------------------------------hhHH-----HHhhHHHhhccchh
Confidence            999999999999999975532                                    2222     34688899999999


Q ss_pred             hhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 002439          763 AAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG  842 (921)
Q Consensus       763 a~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~  842 (921)
                      +.++++.+..+|.+|..++..++...+...      .  ...|++|+++.+..+.+|+++.+.+.+.|+.+++|||++.+
T Consensus       637 ~av~lesV~~Dv~eL~~g~~l~~kE~e~~~------~--~~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk  708 (830)
T KOG1923|consen  637 TAVQLESVLADVKELNAGMTLAEKETEREG------L--DVILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPK  708 (830)
T ss_pred             hhhhhhccchhHHHHHhHHHHHHHHHhhhc------c--chHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCC
Confidence            999999999999999999998886655322      1  16899999999999999999999999999999999988888


Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHhhhhh
Q 002439          843 KDEGLRLFTIVRDFFIMLDKACKQVKDAPKK  873 (921)
Q Consensus       843 k~~~~~fF~iv~dFl~~l~ka~kEv~~~~kr  873 (921)
                      ...+.-||..|..|..+|.++..|++...+.
T Consensus       709 ~tppt~ff~~f~~F~~~~k~~~~ene~k~~l  739 (830)
T KOG1923|consen  709 TTPPTVFFQLFVRFVRAYKMARQENEQKKKL  739 (830)
T ss_pred             CCCCCccHHHHHHHHHHHHhhhhhhhhhhhH
Confidence            8888999999999999999999888765553

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=100.00  E-value=4.5e-41  Score=367.16  Aligned_cols=363  Identities=24%  Similarity=0.320  Sum_probs=299.6

Q ss_pred             CCCCCcCccccceeccC--------CCCCccccccccCccccchHHHHhhhccccccccccccCCCCCCCCccccccchH
Q 002439          460 APKTKLKPFFWDKVLAN--------PDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQK  531 (921)
Q Consensus       460 ~Pk~klK~l~W~KI~~~--------~~~~TIW~~i~~~~~~ld~e~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~lLD~K  531 (921)
                      ..+++.-.+||..+...        ...+|+|+.++...  +|...|+.||..+.++....||.  .+.+.+..+|||.|
T Consensus       279 ~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~--~D~~r~~~LFEsr~~~~~P~KK~--~E~r~~~~tVL~~K  354 (817)
T KOG1925|consen  279 PTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVS--VDTARLEHLFESRAKEVLPSKKA--GEGRRTMTTVLDPK  354 (817)
T ss_pred             cccCceeEEEeecceecCCCCCccccccchhhhccCcce--ecHHHHHHHHHHhhhhhccchhh--cccceeeeeecCcc
Confidence            34566778999876532        34679999997643  79999999998763222122221  23455688999999


Q ss_pred             HHhhHHHHHhhcCCCHHHHHHhhhcCCC--CcHHHHHHHHhhCCCHHHHHHHhhh--cCCCCCCChHHHHHHHHhCCcch
Q 002439          532 KAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLF--NGELSQLGPAERFLKALVDIPFS  607 (921)
Q Consensus       532 raqNi~I~L~~lk~s~eei~~aI~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~--~gd~~~L~~aE~Fl~~l~~Ip~~  607 (921)
                      |+|.|+|.|.+|. +..-|..||++.|+  ++.+.|+.|++|+||++|++++...  .+..-.||.+|||++.|+.|+.+
T Consensus       355 Rt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~L  433 (817)
T KOG1925|consen  355 RTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGGL  433 (817)
T ss_pred             cccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHHH
Confidence            9999999999987 56778889998885  7999999999999999999998654  34456899999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhcccccCCCCCCCeeeeeccccccccccccC
Q 002439          608 FKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGV  687 (921)
Q Consensus       608 ~~RL~~llf~~~f~e~~~~l~~~l~~l~~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~  687 (921)
                      ..||+.|.|+..|+..-.+|.+.|-.+..++++|.+++.|+-+|..+|+||||||+.    +++||.|+.|.|..++|++
T Consensus       434 ~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeKvsEVKDt  509 (817)
T KOG1925|consen  434 AARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEKVSEVKDT  509 (817)
T ss_pred             HHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhhchhhcch
Confidence            999999999999999999999999999999999999999999999999999999986    5899999999999999999


Q ss_pred             CCCeehHHHHHHHHHHhhhhhHHhhhhcccccccccchhhHHhhccCccchHHHHhhhhhhhhhhhhhHHHHHHhhhhch
Q 002439          688 DGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDA  767 (921)
Q Consensus       688 d~k~tLLh~lv~~i~~~~g~~~~~~~~e~~~~~~~~~~~ll~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~V~kAa~vd~  767 (921)
                      -.|.||||+|+..+++.              |+               +.            +.|.+|+..|.+.|+||+
T Consensus       510 V~KqsLlhHlc~~vVE~--------------Fp---------------es------------sDLYSEiGA~tRSAkVDf  548 (817)
T KOG1925|consen  510 VRKQSLLHHLCSLVVET--------------FP---------------ES------------SDLYSEIGALTRSAKVDF  548 (817)
T ss_pred             HHHHHHHHHHHHHHHHh--------------CC---------------cc------------hhHHHHhHhhhhhhhccH
Confidence            99999999999887753              21               22            235567888999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---cc
Q 002439          768 DSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG---KD  844 (921)
Q Consensus       768 d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~~~~yF~g~~~---k~  844 (921)
                      ++|...+..|++.+...++-|.. +.+.+-..-.+..|..|++++.++|..|...+.++.+.|.+.+.|||-...   ..
T Consensus       549 ~qL~DNL~qlErrCKaSWe~L~~-Iakhe~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev  627 (817)
T KOG1925|consen  549 EQLTDNLGQLERRCKASWESLRS-IAKHELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREV  627 (817)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHH-HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhc
Confidence            99999999999999999887753 322233345788999999999999999999999999999999999975443   33


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHhhhhh
Q 002439          845 EGLRLFTIVRDFFIMLDKACKQVKDAPKK  873 (921)
Q Consensus       845 ~~~~fF~iv~dFl~~l~ka~kEv~~~~kr  873 (921)
                      ...+||.++++|.-.|......|-+-++|
T Consensus       628 ~iN~fc~~~~EFaLEYRTTRervLQQ~qk  656 (817)
T KOG1925|consen  628 RINQFCHTLREFALEYRTTRERVLQQQQK  656 (817)
T ss_pred             CHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            46889999999998887666555444333

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=3.7e-09  Score=123.23  Aligned_cols=28  Identities=18%  Similarity=0.355  Sum_probs=17.5

Q ss_pred             CCCCCCcCccccceeccCCCC-Ccccccc
Q 002439          459 NAPKTKLKPFFWDKVLANPDN-SMVWHQI  486 (921)
Q Consensus       459 ~~Pk~klK~l~W~KI~~~~~~-~TIW~~i  486 (921)
                      ..|..-...-+|.++..++.. ..+++.+
T Consensus       634 I~p~d~s~~cFWvkv~Edk~en~dlfakL  662 (1102)
T KOG1924|consen  634 IVPRDLSENCFWVKVNEDKLENDDLFAKL  662 (1102)
T ss_pred             cCccccCccceeeecchhhccchHHHHHH
Confidence            445555678899999876633 3344443

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=3.3e-07  Score=103.39  Aligned_cols=31  Identities=23%  Similarity=0.099  Sum_probs=28.1

Q ss_pred             CCcccccccCCCCCCCCcCCCCCCCCCCCCC
Q 002439          301 NSKEEKLDIGKFDGTASFGAVGGTAKSFNEN  331 (921)
Q Consensus       301 ~s~~~K~g~~s~~~~~~~~~~~~~~~~~~~~  331 (921)
                      +++..|.+++.+.++.|+.||||+...+|+.
T Consensus       228 ksk~tk~disaPtnf~h~~hVgwd~~~gf~~  258 (569)
T KOG3671|consen  228 KSKITKADISAPTNFPHIPHVGWDEQVGFDS  258 (569)
T ss_pred             ccccccccCCCCCCCccccccCCCcCCCccc
Confidence            4578899999999999999999999998885

>PHA03247 large tegument protein UL36; Provisional

Probab=98.41  E-value=4.1e-05  Score=99.87  Aligned_cols=9  Identities=22%  Similarity=0.420  Sum_probs=5.8

Q ss_pred             HHHHhhhhh
Q 002439           59 LLWFSCGID   67 (921)
Q Consensus        59 ~~w~~c~~d   67 (921)
                      +.||+-..|
T Consensus      2534 ~~w~~glEe 2542 (3151)
T PHA03247       2534 LTWIRGLEE 2542 (3151)
T ss_pred             hhhhhhhhh
Confidence            358876665

>PHA03247 large tegument protein UL36; Provisional

Probab=98.29  E-value=0.00025  Score=93.02  Aligned_cols=12  Identities=8%  Similarity=0.221  Sum_probs=5.0

Q ss_pred             hhhhhccCCCcc
Q 002439           39 DFLCKVVDPVTG   50 (921)
Q Consensus        39 ~~~~~~~~~~~~   50 (921)
                      ++.-.+||.-.|
T Consensus      2330 ~Lc~~LFDSR~g 2341 (3151)
T PHA03247       2330 ELCVTLFDSRAR 2341 (3151)
T ss_pred             eehhhhhcCCCC
Confidence            333444444433

>smart00498 FH2 Formin Homology 2 Domain

Probab=97.75  E-value=0.0001  Score=86.19  Aligned_cols=113  Identities=29%  Similarity=0.351  Sum_probs=89.9

Q ss_pred             HHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHhhhhcccCCC---CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002439          756 LENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGEN---SGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKS  832 (921)
Q Consensus       756 L~~V~kAa~vd~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~---~~F~~~m~~Fl~~A~~~v~~L~e~~k~~~~~~k~  832 (921)
                      +....++|..+++.|...+.++...+.++.+++..+.+....+   ..|.+-|..|...+++.+..+.++.++.+.++++
T Consensus       315 m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~  394 (432)
T smart00498      315 MKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKE  394 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444888899999999999999999999998886655432112   2455666777777777788888888899999999


Q ss_pred             hccccccccc--cccccccchhHHHHHHHHHHHHHHHH
Q 002439          833 TGDYFHGNAG--KDEGLRLFTIVRDFFIMLDKACKQVK  868 (921)
Q Consensus       833 ~~~yF~g~~~--k~~~~~fF~iv~dFl~~l~ka~kEv~  868 (921)
                      +++||++...  +..+..+|.+++||+.++|++|++++
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~  432 (432)
T smart00498      395 TTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG  432 (432)
T ss_pred             HHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence            9999998653  34568899999999999999999874

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=97.43  E-value=0.0021  Score=73.38  Aligned_cols=9  Identities=11%  Similarity=0.468  Sum_probs=4.0

Q ss_pred             HHHhhhcCc
Q 002439           72 KEVVEDLNL   80 (921)
Q Consensus        72 ~~~~~~~~~   80 (921)
                      +|.-.+|+|
T Consensus        93 qELY~nf~y  101 (569)
T KOG3671|consen   93 QELYQNFEY  101 (569)
T ss_pred             HHhhhhcee
Confidence            344444444

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=96.86  E-value=0.068  Score=64.46  Aligned_cols=32  Identities=25%  Similarity=0.167  Sum_probs=23.7

Q ss_pred             HHHHHHHhcHHHHHHHHHHHHhcccccCCCCC
Q 002439          636 VACKELRNSRLFLKLLEAVLKTGNRMNDGTFR  667 (921)
Q Consensus       636 ~A~~el~~S~~f~~lL~~VL~iGN~lN~gt~r  667 (921)
                      ...++.|.-+...+++-.+..|+|.=-.|..-
T Consensus       555 ~s~k~sr~lr~VleiILA~gNymns~kRg~ay  586 (830)
T KOG1923|consen  555 KSLKESRKLRPVLEIILAFGNYMNSSKRGAAY  586 (830)
T ss_pred             hhHHHHHHHHHHHHHHHHhhccCCCccccccc
Confidence            44556666777778888899999988777643

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=95.83  E-value=0.27  Score=55.64  Aligned_cols=9  Identities=22%  Similarity=0.360  Sum_probs=5.0

Q ss_pred             hHHHHHhhc
Q 002439          535 NLSIMLRAL  543 (921)
Q Consensus       535 Ni~I~L~~l  543 (921)
                      +..|+++++
T Consensus       489 vatiLsRRi  497 (518)
T KOG1830|consen  489 VATILSRRI  497 (518)
T ss_pred             HHHHHHHHH
Confidence            455666554

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=94.61  E-value=0.22  Score=51.39  Aligned_cols=15  Identities=13%  Similarity=0.271  Sum_probs=7.4

Q ss_pred             CcceehhhhHHHHHH
Q 002439          244 HNTVIIAVVVTAAVT  258 (921)
Q Consensus       244 ~~~~ii~v~vta~~~  258 (921)
                      ...+|++|+++++++
T Consensus        77 ~~~iivgvi~~Vi~I   91 (179)
T PF13908_consen   77 ITGIIVGVICGVIAI   91 (179)
T ss_pred             eeeeeeehhhHHHHH
Confidence            344555565554433

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=94.08  E-value=0.041  Score=54.61  Aligned_cols=29  Identities=31%  Similarity=0.516  Sum_probs=15.8

Q ss_pred             CcceehhhhHHHHHH--HHHHHHHHHHhccc
Q 002439          244 HNTVIIAVVVTAAVT--FVAAALLFLCCSRF  272 (921)
Q Consensus       244 ~~~~ii~v~vta~~~--~v~a~llf~~c~~~  272 (921)
                      ++++||||+||..+.  +++++|+|+||.|+
T Consensus        47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~   77 (154)
T PF04478_consen   47 NKNIVIGVVVGVGGPILLGILALVFIFCIRR   77 (154)
T ss_pred             CccEEEEEEecccHHHHHHHHHhheeEEEec
Confidence            346889998874333  33344444444443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PHA03291 envelope glycoprotein I; Provisional

Probab=92.95  E-value=0.66  Score=51.68  Aligned_cols=49  Identities=20%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             CCCCCCCcceehhhhHHHHHHHHHHHHHHHHhcc-cccCCCCCCCCCCCC
Q 002439          238 DDKTNHHNTVIIAVVVTAAVTFVAAALLFLCCSR-FCRTGSGGRQNDERP  286 (921)
Q Consensus       238 ~~~~~~~~~~ii~v~vta~~~~v~a~llf~~c~~-~~~~~~~~~~~Dd~p  286 (921)
                      ++.+....+-||-++|.|.++.+++-=-|.||.- +||++++.+.+-++|
T Consensus       278 ~sr~~Lt~~qiiQiAIPasii~cV~lGSC~Ccl~R~~rRr~r~~~~IY~P  327 (401)
T PHA03291        278 ASRYELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPARIYRP  327 (401)
T ss_pred             hhhhhhhhhhhheeccchHHHHHhhhhhhhhhhhhhhhcccCCcCcccCC
Confidence            5667778888999999777555444434555443 333334444444444

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=91.49  E-value=0.11  Score=40.17  Aligned_cols=31  Identities=13%  Similarity=0.270  Sum_probs=17.4

Q ss_pred             CCCCCcceehhhhHHHHHHHHHHHHHHHHhc
Q 002439          240 KTNHHNTVIIAVVVTAAVTFVAAALLFLCCS  270 (921)
Q Consensus       240 ~~~~~~~~ii~v~vta~~~~v~a~llf~~c~  270 (921)
                      +++...++.+||++..++++++++++|+++.
T Consensus         6 ~~~~~vaIa~~VvVPV~vI~~vl~~~l~~~~   36 (40)
T PF08693_consen    6 SNSNTVAIAVGVVVPVGVIIIVLGAFLFFWY   36 (40)
T ss_pred             CCCceEEEEEEEEechHHHHHHHHHHhheEE
Confidence            3344456667777766665555554444333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=90.53  E-value=1.5  Score=45.13  Aligned_cols=18  Identities=17%  Similarity=0.202  Sum_probs=10.3

Q ss_pred             cceehhhhHHHHHHHHHH
Q 002439          245 NTVIIAVVVTAAVTFVAA  262 (921)
Q Consensus       245 ~~~ii~v~vta~~~~v~a  262 (921)
                      +.++++|+++.++.+|++
T Consensus        74 ~~~~~~iivgvi~~Vi~I   91 (179)
T PF13908_consen   74 IYFITGIIVGVICGVIAI   91 (179)
T ss_pred             ccceeeeeeehhhHHHHH
Confidence            456667776666534333

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=87.95  E-value=0.44  Score=46.12  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             CCCCcceehhhhHHHHHHHHHHHHHHHHhcccccCC
Q 002439          241 TNHHNTVIIAVVVTAAVTFVAAALLFLCCSRFCRTG  276 (921)
Q Consensus       241 ~~~~~~~ii~v~vta~~~~v~a~llf~~c~~~~~~~  276 (921)
                      |.-...+|+++++|+++.+|+++||+++|+||.||+
T Consensus        59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             cCccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344445677777776666666666664444444433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=85.68  E-value=0.86  Score=54.67  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=20.1

Q ss_pred             CCcceehhhhHHHHHHHHHHHHHHHHhccc
Q 002439          243 HHNTVIIAVVVTAAVTFVAAALLFLCCSRF  272 (921)
Q Consensus       243 ~~~~~ii~v~vta~~~~v~a~llf~~c~~~  272 (921)
                      .+.-+||||++..+++++++++++||||++
T Consensus       267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk  296 (684)
T PF12877_consen  267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRK  296 (684)
T ss_pred             CCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence            345667888877776666666666666643

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=84.08  E-value=0.77  Score=40.70  Aligned_cols=27  Identities=22%  Similarity=0.647  Sum_probs=15.2

Q ss_pred             ehhhhHHHHHHHHHHHHHHHHhccccc
Q 002439          248 IIAVVVTAAVTFVAAALLFLCCSRFCR  274 (921)
Q Consensus       248 ii~v~vta~~~~v~a~llf~~c~~~~~  274 (921)
                      |++++++|++++++++++++||.++|+
T Consensus         2 ii~~~~~g~~~ll~~v~~~~~~~rr~~   28 (75)
T PF14575_consen    2 IIASIIVGVLLLLVLVIIVIVCFRRCK   28 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCTT--
T ss_pred             EEehHHHHHHHHHHhheeEEEEEeeEc
Confidence            556666666666655555666665544

...

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=82.98  E-value=1.5  Score=33.55  Aligned_cols=8  Identities=13%  Similarity=0.588  Sum_probs=3.1

Q ss_pred             HHHHhccc
Q 002439          265 LFLCCSRF  272 (921)
Q Consensus       265 lf~~c~~~  272 (921)
                      +++-||.|
T Consensus        24 ~~YaCcyk   31 (38)
T PF02439_consen   24 FYYACCYK   31 (38)
T ss_pred             HHHHHHHc
Confidence            33334433

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]

Probab=82.01  E-value=16  Score=41.95  Aligned_cols=12  Identities=25%  Similarity=0.529  Sum_probs=6.4

Q ss_pred             CCCHHHHHHhhh
Q 002439          544 NVTLEEVCDALL  555 (921)
Q Consensus       544 k~s~eei~~aI~  555 (921)
                      +++.++...+++
T Consensus       469 ~vtkDDaY~~FM  480 (487)
T KOG4672|consen  469 KVTKDDAYNAFM  480 (487)
T ss_pred             CCcchHHHHHHH
Confidence            345566555554

>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known []

Probab=81.71  E-value=5.7  Score=39.21  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=22.0

Q ss_pred             CCCCcceehhhhHHHHHHHHHHHHHHHHhc
Q 002439          241 TNHHNTVIIAVVVTAAVTFVAAALLFLCCS  270 (921)
Q Consensus       241 ~~~~~~~ii~v~vta~~~~v~a~llf~~c~  270 (921)
                      +..+.++|-||+.+.++++.+++.+|+|+|
T Consensus        56 ~~lsgtAIaGIVfgiVfimgvva~i~icvC   85 (155)
T PF10873_consen   56 DVLSGTAIAGIVFGIVFIMGVVAGIAICVC   85 (155)
T ss_pred             cccccceeeeeehhhHHHHHHHHHHHHHHh
Confidence            345678999999888888777766666544

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=81.69  E-value=55  Score=42.30  Aligned_cols=19  Identities=5%  Similarity=0.020  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHhcccccCCC
Q 002439          647 FLKLLEAVLKTGNRMNDGT  665 (921)
Q Consensus       647 f~~lL~~VL~iGN~lN~gt  665 (921)
                      .+++-.+|-.++|||+..+
T Consensus      1470 ~~el~~Li~~v~~Flt~~~ 1488 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPD 1488 (1758)
T ss_pred             HHHHHHHHHHHHHHhcCCC
Confidence            3444556778899999865

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=81.53  E-value=0.55  Score=40.00  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=0.0

Q ss_pred             ceehhhhHHHHHHHHHHHHHHHH
Q 002439          246 TVIIAVVVTAAVTFVAAALLFLC  268 (921)
Q Consensus       246 ~~ii~v~vta~~~~v~a~llf~~  268 (921)
                      .++.||++++++.++++++|++|
T Consensus         9 ~vlaavIaG~Vvgll~ailLIlf   31 (64)
T PF01034_consen    9 EVLAAVIAGGVVGLLFAILLILF   31 (64)
T ss_dssp             -----------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556655555555555544

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	921
3o4x_E	467	Crystal Structure Of Complex Between Amino And Carb		1e-23
3obv_E	457	Autoinhibited Formin Mdia1 Structure Length = 457		3e-23
1v9d_A	340	Crystal Structure Of The Core Fh2 Domain Of Mouse M		5e-23
2j1d_G	483	Crystallization Of Hdaam1 C-Terminal Fragment Lengt		8e-19
2z6e_A	419	Crystal Structure Of Human Daam1 Fh2 Length = 419		1e-18
4eah_A	402	Crystal Structure Of The Formin Homology 2 Domain O		5e-15

>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467

Iteration: 1
 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 145/341 (42%), Gaps = 45/341 (13%)
Query: 529 DQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNG 586
           D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+   L     
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 587 ELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRL 646
           E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+ELR S  
Sbjct: 163 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 222
Query: 647 FLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIXXXX 706
           F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+         
Sbjct: 223 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLA-------- 274
Query: 707 XXXXXXXXXXXXXXXXKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID 766
                              +L E     N+  E         V     EL +V+KA+ + 
Sbjct: 275 -------------------ELCE-----NDHPE---------VLKFPDELAHVEKASRVS 301
Query: 767 ADSLTGTVSKLGHALLKT-RDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKR 825
           A++L  ++ ++   +    RD  N       E   F E + SFV++A+     L      
Sbjct: 302 AENLQKSLDQMKKQIADVERDVQNFPAAT-DEKDKFVEKMTSFVKDAQEQYNKLRMMHSN 360
Query: 826 IMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ 866
           + +L K  GDYF  +  K      F  + +F  M  +A K+
Sbjct: 361 METLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKE 401

>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457

Iteration: 1
 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 147/344 (42%), Gaps = 51/344 (14%)
Query: 529 DQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNG 586
           D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+   L     
Sbjct: 84  DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 143
Query: 587 ELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRL 646
           E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+ELR S  
Sbjct: 144 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 203
Query: 647 FLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIXXXX 706
           F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+         
Sbjct: 204 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLA-------- 255
Query: 707 XXXXXXXXXXXXXXXXKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID 766
                              +L E     N+  E         V     EL +V+KA+ + 
Sbjct: 256 -------------------ELCE-----NDHPE---------VLKFPDELAHVEKASRVS 282
Query: 767 ADSLTGTVSKLGHALLKTRDFLNTDMKNL----GENSGFHETLKSFVQNAEGDIMWLLEE 822
           A++L  ++ ++   +      +  D++N      E   F E + SFV++A+     L   
Sbjct: 283 AENLQKSLDQMKKQIAD----VERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMM 338
Query: 823 EKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ 866
              + +L K  GDYF  +  K      F  + +F  M  +A K+
Sbjct: 339 HSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKE 382

>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340

Iteration: 1
 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 147/345 (42%), Gaps = 53/345 (15%)
Query: 529 DQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNG 586
           D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+   L     
Sbjct: 13  DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 587 ELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRL 646
           E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+ELR S  
Sbjct: 73  EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 132
Query: 647 FLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIXXXX 706
           F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+         
Sbjct: 133 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLA-------- 184
Query: 707 XXXXXXXXXXXXXXXXKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID 766
                              +L E     N+  E         V     EL +V+KA+ + 
Sbjct: 185 -------------------ELCE-----NDHPE---------VLKFPDELAHVEKASRVS 211
Query: 767 ADSLTGTVSKLGHALLKT-RDFLN----TDMKNLGENSGFHETLKSFVQNAEGDIMWLLE 821
           A++L  ++ ++   +    RD  N    TD     E   F E + SFV++A+     L  
Sbjct: 212 AENLQKSLDQMKKQIADVERDVQNFPAATD-----EKDKFVEKMTSFVKDAQEQYNKLRM 266
Query: 822 EEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQ 866
               + +L K  GDYF  +  K      F  + +F  M  +A K+
Sbjct: 267 MHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKE 311

>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483

Iteration: 1
 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 20/257 (7%)
Query: 461 PKTKLKPFFWDKVLANPDNSMVWHQIK-SGSFQ-FNEEMIETLFG--------YXXXXXX 510
           P   LK F W K+  N     VW +I  +  F+  + E +E  F         +      
Sbjct: 11  PTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSK 70
Query: 511 XXXXXXXLDT-----GPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALL---EGNELPA 562
                   DT       + + +ID ++AQN +I+L  L ++ +E+  A+L   E  +LP 
Sbjct: 71  QKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPK 130
Query: 563 ELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQE 622
           ++++ LLK  P   +   L     EL ++  A+RFL  +  I    +RL++L F     E
Sbjct: 131 DMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAE 190
Query: 623 EVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLS 682
            V+  K   E +    +E+  S    +LLE VL  GN MN G  RG A  FK+ +L K++
Sbjct: 191 RVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIA 249
Query: 683 DVK-GVDGKTTLLHFVV 698
           D K  +D   TLLH+++
Sbjct: 250 DTKSSIDKNITLLHYLI 266

>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 525 IQIIDQKKAQNLSIMLRALNVTLEEVCDALL---EGNELPAELIQTLLKMAPTAEEELKL 581
           + +ID ++AQN +I+L  L ++ +E+  A+L   E  +LP ++++ LLK  P   +   L
Sbjct: 92  LSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLL 151
Query: 582 RLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKEL 641
                EL ++  A+RFL  +  I    +RL++L F     E V+  K   E +    +E+
Sbjct: 152 EEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEV 211
Query: 642 RNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVK-GVDGKTTLLHFVV 698
             S    +LLE VL  GN MN G  RG A  FK+ +L K++D K  +D   TLLH+++
Sbjct: 212 FRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDKNITLLHYLI 268

>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
Query: 525 IQIIDQKKAQNLSIMLRALNVTLEEVCDAL--LEGNELPAELIQTLLKMAPTAEEELKLR 582
           + +++  +A+NL+I LR    + EE+C A+   +   LP + ++ L++  PT  E   LR
Sbjct: 84  VTLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLR 143
Query: 583 LFNGE---LSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACK 639
            +  E   L +L   +RF+     +    +R+  + F+   Q+ +         +  A  
Sbjct: 144 QYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASA 203
Query: 640 ELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFV 697
            +++S+   ++LE +L  GN MN    RG    FKL +L  L D K  D K TLLHF+
Sbjct: 204 SVKSSQKLKQMLEIILALGNYMNSSK-RGAVYGFKLQSLDLLLDTKSTDRKMTLLHFI 260

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	921
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	1e-115
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	1e-108
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	1e-103
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	4e-85
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-17
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-17
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-12
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-14
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-14
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	8e-13
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-12
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-12
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-12
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	8e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-12
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-12
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	9e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-11
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	5e-11
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	5e-09
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	2e-06
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	5e-10
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-09
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-08
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	2e-07
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	7e-06
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	6e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-09
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	3e-07
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-06
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	1e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	3e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	5e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-09
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	6e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-08
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	3e-08
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	1e-06
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	6e-05
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	5e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	4e-08
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	7e-08
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	1e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	7e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	7e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-06
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	1e-07
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	2e-06
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	6e-06
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	7e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-04
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	1e-07
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	4e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	3e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	7e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	3e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	3e-07
3a58_A	320	Exocyst complex component SEC3; protein complex, P	4e-07
3a58_A	320	Exocyst complex component SEC3; protein complex, P	8e-07
3a58_A	320	Exocyst complex component SEC3; protein complex, P	1e-06
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-06
3a58_A	320	Exocyst complex component SEC3; protein complex, P	1e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	7e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	7e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
1eys_C	382	Photosynthetic reaction center; membrane protein c	4e-07
1eys_C	382	Photosynthetic reaction center; membrane protein c	2e-05
1eys_C	382	Photosynthetic reaction center; membrane protein c	1e-04
1eys_C	382	Photosynthetic reaction center; membrane protein c	1e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-07
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	8e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	1e-06
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	4e-06
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	5e-06
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	4e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	5e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	6e-06
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	2e-05
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	3e-05
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	9e-05
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	5e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	6e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	6e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	2e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	4e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	6e-06
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	3e-05
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	5e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-05
3oti_A	398	CALG3; calicheamicin, TDP, structural genomics, PS	2e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	5e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	7e-04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	6e-05
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	1e-04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	3e-04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	4e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-04
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	9e-05
2yjn_A	441	ERYCIII, glycosyltransferase; transferase, cytochr	1e-04
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	1e-04
1g9l_A	144	Polyadenylate-binding protein 1; all-helical domai	1e-04
1g9l_A	144	Polyadenylate-binding protein 1; all-helical domai	4e-04
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	1e-04
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-04
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	3e-04
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	5e-04
3tsa_A	391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	3e-04
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	4e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-04
4af8_A	367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	5e-04
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	6e-04
3m1c_B	204	GL, envelope glycoprotein L; glycoprotein H, GH/GL	7e-04
3aqq_A	147	Calcium-regulated heat stable protein 1; compact b	9e-04

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457

 Score =  358 bits (920), Expect = e-115
 Identities = 108/448 (24%), Positives = 179/448 (39%), Gaps = 53/448 (11%)

Query: 461 PKTKLKPFFWDKVLAN-PDNSMVWHQIKSGSFQFNEEM--IETLFGYSEKSKNEKKKGSS 517
           P+ +L+   W K +A        W ++K   F+ NE    +   F    K+   KK    
Sbjct: 6   PEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEG 65

Query: 518 LDTG-------PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTL 568
            +          + ++++D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L
Sbjct: 66  GEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNL 125

Query: 569 LKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATK 628
           +K  P  E+   L     E   L  +E+F   +  +P    RL A+LF     E+V   K
Sbjct: 126 IKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIK 185

Query: 629 ESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVD 688
                +  AC+ELR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  D
Sbjct: 186 PEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSAD 245

Query: 689 GKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQA 748
            K TLLHF+ +                                      +  +  +    
Sbjct: 246 QKMTLLHFLAELC------------------------------------ENDHPEV---- 265

Query: 749 VSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSF 808
                 EL +V+KA+ + A++L  ++ ++   +      +        E   F E + SF
Sbjct: 266 -LKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSF 324

Query: 809 VQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVK 868
           V++A+     L      + +L K  GDYF  +  K      F  + +F  M  +A K+ +
Sbjct: 325 VKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQ 384

Query: 869 DAPKKSTKSLKKEGSTASSSSDTPQQPS 896
              +   K  + + +   +  +  ++  
Sbjct: 385 KRRETEEKMRRAKLAKEKAEKERLEKQQ 412

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483

 Score =  341 bits (876), Expect = e-108
 Identities = 101/441 (22%), Positives = 174/441 (39%), Gaps = 62/441 (14%)

Query: 461 PKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSK------NEK 512
           P   LK F W K+  N     VW +I         + E +E  F   ++ +      N K
Sbjct: 11  PTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSK 70

Query: 513 KKGSSLDTG-------PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE---LPA 562
           +K +             + + +ID ++AQN +I+L  L ++ +E+  A+L  +E   LP 
Sbjct: 71  QKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPK 130

Query: 563 ELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQE 622
           ++++ LLK  P   +   L     EL ++  A+RFL  +  I    +RL++L F     E
Sbjct: 131 DMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAE 190

Query: 623 EVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLS 682
            V+  K   E +    +E+  S    +LLE VL  GN MN G  RG A  FK+ +L K++
Sbjct: 191 RVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIA 249

Query: 683 DVKG-VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHY 741
           D K  +D   TLLH+++  +                                        
Sbjct: 250 DTKSSIDKNITLLHYLITIVENKY------------------------------------ 273

Query: 742 RNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGE-NSG 800
                 +V +L+ EL ++ +AA ++   L   +S L   L      L        +    
Sbjct: 274 -----PSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDK 328

Query: 801 FHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIML 860
           F   +  F+  A      + +       L      +F   AGK +    F I   F   +
Sbjct: 329 FVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAV 388

Query: 861 DKACKQVKDAPKKSTKSLKKE 881
            +A ++ ++  KK  +  ++ 
Sbjct: 389 SEAKQENENMRKKKEEEERRA 409

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340

 Score =  325 bits (834), Expect = e-103
 Identities = 95/375 (25%), Positives = 153/375 (40%), Gaps = 43/375 (11%)

Query: 522 PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEEL 579
            + ++++D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+  
Sbjct: 6   VKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLK 65

Query: 580 KLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACK 639
            L     E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+
Sbjct: 66  MLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACE 125

Query: 640 ELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQ 699
           ELR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+ +
Sbjct: 126 ELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 185

Query: 700 EIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENV 759
                                                            V     EL +V
Sbjct: 186 LCENDH-----------------------------------------PEVLKFPDELAHV 204

Query: 760 KKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWL 819
           +KA+ + A++L  ++ ++   +      +        E   F E + SFV++A+     L
Sbjct: 205 EKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKL 264

Query: 820 LEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLK 879
                 + +L K  GDYF  +  K      F  + +F  M  +A K+ +   +   K  +
Sbjct: 265 RMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRR 324

Query: 880 KEGSTASSSSDTPQQ 894
            + +   +  +  ++
Sbjct: 325 AKLAKEKAEKERLEK 339

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411

 Score =  278 bits (712), Expect = 4e-85
 Identities = 73/449 (16%), Positives = 140/449 (31%), Gaps = 85/449 (18%)

Query: 461 PKTKLKPFFWDKVLANPDNSMVWHQIKSGSF------QFNEEMIETLFGYSEKSKNEKKK 514
           P  KLK   W+K+  +  ++ +W   K+  F      +     +E  F   E      K+
Sbjct: 5   PHKKLKQLHWEKL--DCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR 62

Query: 515 GSSLDTGPQYIQIIDQKKAQNLSIMLRAL-NVTLEEVCDALLEGNE--LPAELIQTLL-- 569
                   Q I  + +  +Q   I L    ++++ ++   +L  +   L    +   L  
Sbjct: 63  KED----LQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSK 118

Query: 570 ------------KMAPTAEEELKLRLFN------GELSQLGPAERFLKALV--DIPFSFK 609
                         AP + +   +R          + + L  A++    L+     +   
Sbjct: 119 SEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGS 178

Query: 610 RLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGG 669
           R+ AL  + + + E +        ++ A   L+ S     +   +L  GN MND +    
Sbjct: 179 RMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS--KQ 236

Query: 670 AQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLE 729
           AQ FKL TL +L+ +K      T L++V + +                            
Sbjct: 237 AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIV---------------------------- 268

Query: 730 ETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLN 789
                     +Y +      +   SELE V     +  + L         +++     + 
Sbjct: 269 --------RLNYPSF-----NDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVE 315

Query: 790 T----DMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDE 845
                D                 +  A      L +E K  +   +S    +  ++G   
Sbjct: 316 IGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKF 375

Query: 846 GL-RLFTIVRDFFIMLDKACKQVKDAPKK 873
                F    DF     KA  Q   A ++
Sbjct: 376 AKISFFKKFADFINEYKKAQAQNLAAEEE 404

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 81.2 bits (200), Expect = 2e-17
 Identities = 31/128 (24%), Positives = 36/128 (28%)

Query: 316 ASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRP 375
            S    G   K        L      PG   +  +G+P   P P     L         P
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 376 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 435
                 P       A       + A      PP  G PPPP  RG P P    P P    
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 436 VPRPPLGQ 443
              PP+G 
Sbjct: 198 PMGPPMGI 205

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 80.8 bits (199), Expect = 3e-17
 Identities = 32/110 (29%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 332 GQVLPPL-KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 390
            Q    L  P  G  G + Q M P       A         +  P         PPPP  
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
              PP     P     PP   P   PP RG P   PPP M      P PP
Sbjct: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMR-----PPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 65.4 bits (159), Expect = 6e-12
 Identities = 22/86 (25%), Positives = 24/86 (27%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           P  +       +         P           PP      PP    PPP   P   PP 
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGG 421
              P    P   P PG  PPPP   G
Sbjct: 204 GIPPGRGTPMGMPPPGMRPPPPGMRG 229

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 20/100 (20%), Positives = 26/100 (26%), Gaps = 4/100 (4%)

Query: 358 PPGRAEPLPHEPPASLRPHPPSGPPP---PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 414
           PP +   +   P A     P  G       P   P P+ P   A   R    P       
Sbjct: 85  PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS-QQVMT 143

Query: 415 PPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGA 454
           P       A              + P G+      +G GA
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 18/78 (23%), Positives = 19/78 (24%), Gaps = 5/78 (6%)

Query: 374 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP----PPRGGPAPRPPPP 429
            P P        P   A   P     A R  P    P P  P     P RG   P     
Sbjct: 84  GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV-PMPQAPAGLAGPVRGVGGPSQQVM 142

Query: 430 MPSGSKVPRPPLGQKHSS 447
            P G            +S
Sbjct: 143 TPQGRGTVAAAAAAATAS 160

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 75.6 bits (185), Expect = 5e-14
 Identities = 13/117 (11%), Positives = 22/117 (18%)

Query: 332 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
           GQ   PL+ P   +         +        P    P    +                 
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 392 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSS 448
                       P   P     P  P + G   +      +     +P      +  
Sbjct: 77  TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 75.2 bits (184), Expect = 6e-14
 Identities = 23/121 (19%), Positives = 31/121 (25%)

Query: 320 AVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPS 379
             G  A    +  Q +PP  P    +     GMPP    P   +     P          
Sbjct: 15  QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQID 74

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 439
                         P     A   P  P + G P     +   AP    P  +  +  RP
Sbjct: 75  QATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRP 134

Query: 440 P 440
            
Sbjct: 135 M 135

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 74.5 bits (182), Expect = 1e-13
 Identities = 20/119 (16%), Positives = 28/119 (23%), Gaps = 3/119 (2%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
           +V P  +   G+  + LQ      PP     P            PP G  P         
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFMPPQD---PAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVG 451
           P                        P   P     P +P     P     Q  ++ + G
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 69.5 bits (169), Expect = 4e-12
 Identities = 13/137 (9%), Positives = 26/137 (18%)

Query: 350 QGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPK 409
           +  P  +   G+      +P   + P  P+           P     P+   +    P +
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66

Query: 410 PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFF 469
                                            Q           +    A     +P  
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 470 WDKVLANPDNSMVWHQI 486
                  P N +    +
Sbjct: 127 AMGQNMRPMNQLYPIDL 143

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 67.5 bits (164), Expect = 1e-11
 Identities = 14/102 (13%), Positives = 20/102 (19%)

Query: 331 NGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 390
            G     +  PP     ++     L P   +      +   S+        P   P    
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
               P     P      P   P    P         P     
Sbjct: 98  QPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 67.2 bits (163), Expect = 2e-11
 Identities = 18/125 (14%), Positives = 24/125 (19%), Gaps = 1/125 (0%)

Query: 317 SFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPH 376
              A      +     Q         G++G   QG  P         P   +    +   
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 377 PPSGPPPPPPPPPAPRPPPAPAP-APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 435
             S         P   P     P  P     P +    P   P  G              
Sbjct: 77  TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136

Query: 436 VPRPP 440
              P 
Sbjct: 137 QLYPI 141

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 66.4 bits (161), Expect = 3e-11
 Identities = 16/117 (13%), Positives = 21/117 (17%), Gaps = 3/117 (2%)

Query: 327 SFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPP 386
             N      P    PP    +       +  PP  A P   +                  
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 387 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 443
                       P      P     P  P         +  P        P   +GQ
Sbjct: 77  TTSMNDMHLHNVP---LVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 63.3 bits (153), Expect = 3e-10
 Identities = 11/105 (10%), Positives = 19/105 (18%), Gaps = 1/105 (0%)

Query: 358 PPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA-PRAPPPPPKPGPPPPP 416
              R  P                    PP  PA           P     P         
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 417 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
           P +     +      S + +    +     ++ +          P
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.4 bits (148), Expect = 1e-09
 Identities = 10/112 (8%), Positives = 15/112 (13%), Gaps = 3/112 (2%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP---PPAPAPAPRAPPPPPK 409
              +  P              +P     P  P     +      PP  A           
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 410 PGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
           P                         +  P    +                P
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP 115

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 60.6 bits (146), Expect = 2e-09
 Identities = 15/86 (17%), Positives = 19/86 (22%), Gaps = 2/86 (2%)

Query: 376 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 435
           H      P           P   PA   PP  P            G  P+   P     +
Sbjct: 3   HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQM--GMPPQGAVPSMGQQQ 60

Query: 436 VPRPPLGQKHSSSSVGAGAEGDANAP 461
              P   Q H        +  D +  
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLH 86

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 20/116 (17%), Positives = 26/116 (22%), Gaps = 2/116 (1%)

Query: 332 GQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
            Q+   +      +        PL  P    +P    P     P      P   P    P
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQV--PVQMGTPLQQQQQPMAAPAYGQP 124

Query: 392 RPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 447
                    P     P       PPP      P PP  +P    +    L      
Sbjct: 125 SAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPD 180

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 68.2 bits (166), Expect = 8e-13
 Identities = 29/106 (27%), Positives = 39/106 (36%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
           P P +   +    PA L P     PPP P   P P P P P P   AP    KP P P P
Sbjct: 29  PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 88

Query: 417 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPK 462
            P+     +  P         RP    ++++ +    +   A   K
Sbjct: 89  KPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSK 134

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 66.3 bits (161), Expect = 3e-12
 Identities = 23/122 (18%), Positives = 31/122 (25%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
           QV+    P      + +       P   +  P P   P       P  P   P     P+
Sbjct: 24  QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 452
           P P P P P             P   R         P    S        +  +S + G 
Sbjct: 84  PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143

Query: 453 GA 454
            A
Sbjct: 144 RA 145

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 65.9 bits (160), Expect = 4e-12
 Identities = 26/123 (21%), Positives = 34/123 (27%)

Query: 341 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 400
           P G   S  Q +    P    +  +               P P   P P P P P P   
Sbjct: 15  PRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 74

Query: 401 PRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANA 460
                  PKP P P P P      +P   +      P  P      +    + A    + 
Sbjct: 75  APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSK 134

Query: 461 PKT 463
           P T
Sbjct: 135 PVT 137

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 64.7 bits (157), Expect = 9e-12
 Identities = 22/107 (20%), Positives = 29/107 (27%)

Query: 334 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
           V P    PP  V    + +   +P P      P E P  +    P   P P P       
Sbjct: 40  VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQ 99

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
           P        + P  P     P              P+ S +  PR  
Sbjct: 100 PKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRAL 146

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 62.0 bits (150), Expect = 8e-11
 Identities = 25/105 (23%), Positives = 32/105 (30%)

Query: 363 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 422
           E      P S+    P+   PP    P P P   P P P   P PPK  P     P+  P
Sbjct: 27  ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86

Query: 423 APRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
            P+P P      +  R     +   +S             T    
Sbjct: 87  KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 17/102 (16%), Positives = 29/102 (28%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
             ++PPP  V        P+  PP  A  +  +P    +P P         P    +P  
Sbjct: 49  QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 108

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
           +   +P     P +            P         + S+  
Sbjct: 109 SRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQ 150

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 57.4 bits (138), Expect = 3e-09
 Identities = 17/105 (16%), Positives = 21/105 (20%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           P    PP       +  P   P P +  P+  E P       P         P     P 
Sbjct: 48  PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 107

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
              PA       P                      P      +P 
Sbjct: 108 ESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 152

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.9 bits (134), Expect = 9e-09
 Identities = 14/108 (12%), Positives = 21/108 (19%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
                  P P           P  P          +P    +P P       P     P 
Sbjct: 48  PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 107

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
                +P     P             +   +    P   S ++   P 
Sbjct: 108 ESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPA 155

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 18/76 (23%), Positives = 22/76 (28%)

Query: 365 LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
           +P     S+        P  P       P     P    PPP P   P P P P   P  
Sbjct: 14  VPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK 73

Query: 425 RPPPPMPSGSKVPRPP 440
             P  +      P+P 
Sbjct: 74  EAPVVIEKPKPKPKPK 89

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 19/74 (25%)

Query: 367 HEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 426
           H     +              P   +P       P    PP    PPP P     P P P
Sbjct: 8   HHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEP 67

Query: 427 PPPMPSGSKVPRPP 440
            P  P  + V    
Sbjct: 68  IPEPPKEAPVVIEK 81

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 69.0 bits (168), Expect = 2e-12
 Identities = 19/109 (17%), Positives = 26/109 (23%), Gaps = 3/109 (2%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
                        +     +  P         +  A+L P      P PPPPP      P
Sbjct: 5   HHHHHHSS---GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
                  +       GP  P      PA R        +    PP   +
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 65.2 bits (158), Expect = 4e-11
 Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 2/117 (1%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP- 394
             + P      +    +  L PP    +P P  PPA    +PP             R P 
Sbjct: 20  HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPT 79

Query: 395 -PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSV 450
            P       A     +PGP  P           P         P P   ++ S    
Sbjct: 80  GPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRIK 136

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 64.8 bits (157), Expect = 5e-11
 Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 2/95 (2%)

Query: 356 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
                        P  S    P +          A   PP   P P APPPPP P    P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP-APPPPPAPAAGNP 61

Query: 416 PPPRGGPA-PRPPPPMPSGSKVPRPPLGQKHSSSS 449
           P    G +  +     P+G          ++    
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQP 96

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 21/88 (23%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP-PKPGPPPPPPPRGGPAP 424
            H    S    P         P  +     +   A   PP   P P PPPPP P  G  P
Sbjct: 5   HHHHHHSSGLVPR--GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 425 RPPPPMPSGSKVPRPPLGQKHSSSSVGA 452
                     ++ R P G   +S +   
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAV 90

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 59.8 bits (144), Expect = 2e-09
 Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 1/105 (0%)

Query: 345 VGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAP 404
           +GS+            R       P AS+            PP   P P P P PAP A 
Sbjct: 1   MGSSHHHHHHSSGLVPRG-SHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG 59

Query: 405 PPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 449
            PP                  P     + +       G +  +S+
Sbjct: 60  NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASA 104

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 51.3 bits (122), Expect = 9e-07
 Identities = 13/79 (16%), Positives = 18/79 (22%), Gaps = 3/79 (3%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
                      P       P+ +              PP     P P PPPP    +  P
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASV-TSAASDFLAALHPPVTV--PDPAPPPPPAPAAGNP 61

Query: 438 RPPLGQKHSSSSVGAGAEG 456
              +        +  G  G
Sbjct: 62  PDTVTGDSVLQRILRGPTG 80

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 18/98 (18%), Positives = 21/98 (21%), Gaps = 6/98 (6%)

Query: 332 GQVLPPLKPP---PGRVGSTLQGMPPLKPPPGR---AEPLPHEPPASLRPHPPSGPPPPP 385
              L  L PP   P              PP      +         +        P    
Sbjct: 33  SDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRY 92

Query: 386 PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 423
              P P  P +  PA     P     P P P P     
Sbjct: 93  GRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEE 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 3e-12
 Identities = 66/455 (14%), Positives = 126/455 (27%), Gaps = 151/455 (33%)

Query: 522 PQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNELPAELIQTLLKMAPTAEEELKL 581
             ++   D K  Q+   M +  ++  +E  D ++                +  A     L
Sbjct: 27  DAFVDNFDCKDVQD---MPK--SILSKEEIDHIIM---------------SKDAVSGT-L 65

Query: 582 RLFNG-ELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKE 640
           RLF      Q    ++F++ ++ I + F        M  ++ E         +       
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKF-------LMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 641 LRNS-RLFLKL----LEAV--LKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGV------ 687
           L N  ++F K     L+    L+                     LL+L   K V      
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQA-------------------LLELRPAKNVLIDGVL 159

Query: 688 -DGKTTLLHFVVQEIIRSEGVRAARRARESR----SFSSVKTDDLLEE---------TSK 733
             GKT +      ++  S  V   +   + +    +  +  + + + E            
Sbjct: 160 GSGKTWV----ALDVCLSYKV---QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 734 SNETDEHYRNLGL------QAVSHLSSE---------LENVKKAAAIDADSLTGTVSKLG 778
                +H  N+ L        +  L            L NV+ A A +A +L+    K+ 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---CKI- 268

Query: 779 HALLKTRDFLNTDMKNLG---------ENSGFH--ETLKSFVQNAEGDIMWLLEEEKRIM 827
             LL TR    TD  +            +      E     ++  +     L  E     
Sbjct: 269 --LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 828 SLVKST-GDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTAS 886
               S             E +R      D +  ++  C ++    + S   L+       
Sbjct: 327 PRRLSIIA----------ESIRDGLATWDNWKHVN--CDKLTTIIESSLNVLE------- 367

Query: 887 SSSDTPQQPSPDLRHR-----LFPA---ITERRVE 913
                      + R       +FP    I    + 
Sbjct: 368 ---------PAEYRKMFDRLSVFPPSAHIPTILLS 393

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 2e-11
 Identities = 61/451 (13%), Positives = 130/451 (28%), Gaps = 133/451 (29%)

Query: 439 PPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANP----DNSMVWHQ--IKSGSFQ 492
           P    +   SS     +   ++ + +L+     K   N      N  V +     +  F 
Sbjct: 211 PNWTSRSDHSS---NIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNA--FN 263

Query: 493 F---------NEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKAQNLSIMLRAL 543
                      +++ + L   +    +      +L               +  S++L+ L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT------------PDEVKSLLLKYL 311

Query: 544 NVTL----EEVCDALLEGNELPAELIQTLLK-MAPTAE-------EELKLRLFNGELSQL 591
           +        EV       N     +I   ++    T +       ++L   +    L+ L
Sbjct: 312 DCRPQDLPREVLT----TNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVL 366

Query: 592 GPAE--RFLKAL------VDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRN 643
            PAE  +    L        IP        LL    +  +V    +   ++     +L  
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIP------TILL--SLIWFDVI-KSDVMVVVN----KLHK 413

Query: 644 SRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIR 703
             L  K          +  + T      +  L+  +KL +          LH   + I+ 
Sbjct: 414 YSLVEK----------QPKESTIS--IPSIYLELKVKLENEYA-------LH---RSIVD 451

Query: 704 SEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAA 763
                   +  +S        D               Y ++G     HL   +E+ ++  
Sbjct: 452 H---YNIPKTFDSDDLIPPYLDQYF------------YSHIG----HHL-KNIEHPERMT 491

Query: 764 A-----IDADSLTGTVSKLGHALLKTRDFLNT--DMKN----LGENSGFHE----TLKSF 808
                 +D   L   +     A   +   LNT   +K     + +N   +E     +  F
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 809 VQNAEGDIMWLLEEEKRIM--SLVKSTGDYF 837
           +   E ++  +  +   ++  +L+      F
Sbjct: 552 LPKIEENL--ICSKYTDLLRIALMAEDEAIF 580

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 21/110 (19%), Positives = 25/110 (22%), Gaps = 7/110 (6%)

Query: 351 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 410
           G      P G         P    P     PP        P       P       P   
Sbjct: 1   GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPH-G 59

Query: 411 GPPPPPPPRGGPAPRPP------PPMPSGSKVPRPPLGQKHSSSSVGAGA 454
           G    P   G   P               +K  +P    KH + +  AGA
Sbjct: 60  GGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGA 109

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 62.6 bits (151), Expect = 5e-11
 Identities = 17/126 (13%), Positives = 22/126 (17%), Gaps = 3/126 (2%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
                P G   +     P    P G   P            P  G    P      +P  
Sbjct: 3   KKRPKPGGGWNTGGSRYPGQGSPGGNRYP---PQGGGGWGQPHGGGWGQPHGGGWGQPHG 59

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAE 455
                P         G               P    +  K              +G    
Sbjct: 60  GGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYML 119

Query: 456 GDANAP 461
           G A + 
Sbjct: 120 GSAMSR 125

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 56.8 bits (136), Expect = 5e-09
 Identities = 18/102 (17%), Positives = 21/102 (20%), Gaps = 4/102 (3%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
              P      +      P    P   R PP            P  G    P   G   P 
Sbjct: 3   KKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGG----GGWGQPHGGGWGQPHGGGWGQPH 58

Query: 426 PPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
                         P G          G     + PKT +K 
Sbjct: 59  GGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKH 100

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 19/113 (16%), Positives = 21/113 (18%), Gaps = 7/113 (6%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPH-----EPPASLRPHPPSGPPPPPPPPPA 390
            P +  PG      QG      P G     PH     +P       P  G    P     
Sbjct: 19  YPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGG 78

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ 443
                         P  PK             A                PL  
Sbjct: 79  --WGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIH 129

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 18/89 (20%), Positives = 22/89 (24%), Gaps = 3/89 (3%)

Query: 387 PPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP---PMPSGSKVPRPPLGQ 443
               P+P           P    PG    PP  GG   +P       P G    +P  G 
Sbjct: 2   SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61

Query: 444 KHSSSSVGAGAEGDANAPKTKLKPFFWDK 472
                  G G                W+K
Sbjct: 62  WGQPHGGGWGQPHGGGGWGQGGTHGQWNK 90

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 60.0 bits (145), Expect = 5e-10
 Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 3/89 (3%)

Query: 352 MPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
           +P       R  P P +      P P    PP     P+       A    A  P  K  
Sbjct: 4   IPTQTFYGRRWRPAPVQRY---IPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQK 60

Query: 412 PPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
                P +  P        P      +  
Sbjct: 61  RAQKKPKKTPPPKPKKTQKPKKPTQKKKS 89

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 14/90 (15%)

Query: 362 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP-----------APRAPPPPPKP 410
            +          RP P     P P PP  PR    P+            A +      + 
Sbjct: 6   TQTFYGRRW---RPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRA 62

Query: 411 GPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
              P   P   P     P  P+  K  +P 
Sbjct: 63  QKKPKKTPPPKPKKTQKPKKPTQKKKSKPG 92

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 3/102 (2%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
           P +   GR     +  P  +  P    P P                         +    
Sbjct: 5   PTQTFYGR---RWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKR 61

Query: 397 PAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 438
               P+  PPP       P  P      +P   M +  K+  
Sbjct: 62  AQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 10/92 (10%), Positives = 15/92 (16%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
              +P P +        P           L     A                    + PP
Sbjct: 12  RRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPP 71

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
                 + P  P +     P            
Sbjct: 72  PKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 14/82 (17%), Positives = 15/82 (18%), Gaps = 12/82 (14%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPP------------PPPPPRGGP 422
           P          P P     P    PAP      P                      R   
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 423 APRPPPPMPSGSKVPRPPLGQK 444
            P+  PP             QK
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQK 86

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 20/111 (18%), Positives = 26/111 (23%), Gaps = 10/111 (9%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
           Q  PP  P   R  S LQ +               +               PPP P   +
Sbjct: 25  QPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRA------QKKPKKTPPPKPKKTQ 78

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP----PPMPSGSKVPRP 439
            P  P    ++ P                P              G KV +P
Sbjct: 79  KPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKVNGYACLVGDKVMKP 129

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 12/64 (18%), Positives = 15/64 (23%)

Query: 371 ASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPM 430
            S + H        P     P+      PA R         P    P  GG +       
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 431 PSGS 434
            S  
Sbjct: 62  GSAG 65

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 14/80 (17%), Positives = 18/80 (22%), Gaps = 2/80 (2%)

Query: 360 GRAEPLPHE--PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 417
           G ++   H          H P G     P         + AP    P P    G      
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 418 PRGGPAPRPPPPMPSGSKVP 437
              G +        SG    
Sbjct: 62  GSAGTSVTLQLDDGSGRTYQ 81

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 7/63 (11%), Positives = 12/63 (19%)

Query: 356 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
           +     +  L        +    + P            P    PAP       + G    
Sbjct: 5   QHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSA 64

Query: 416 PPP 418
              
Sbjct: 65  GTS 67

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 6/74 (8%), Positives = 9/74 (12%)

Query: 349 LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 408
           +              P     P       P+G         AP                 
Sbjct: 1   MGSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60

Query: 409 KPGPPPPPPPRGGP 422
                     +   
Sbjct: 61  YGSAGTSVTLQLDD 74

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 8/73 (10%), Positives = 9/73 (12%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
                  G      H P       P                 PAP               
Sbjct: 6   HHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAG 65

Query: 413 PPPPPPRGGPAPR 425
                     + R
Sbjct: 66  TSVTLQLDDGSGR 78

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 10/73 (13%), Positives = 15/73 (20%)

Query: 339 KPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA 398
           +         +     +    G AEP   +        P  G P P       +     A
Sbjct: 5   QHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSA 64

Query: 399 PAPRAPPPPPKPG 411
                       G
Sbjct: 65  GTSVTLQLDDGSG 77

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 8/66 (12%), Positives = 10/66 (15%)

Query: 343 GRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPR 402
           G           L P              + R +       P    PAP           
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 403 APPPPP 408
                 
Sbjct: 62  GSAGTS 67

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 6/66 (9%), Positives = 12/66 (18%)

Query: 345 VGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAP 404
           +GS+            R   +P     +              P      P   +   +  
Sbjct: 1   MGSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60

Query: 405 PPPPKP 410
                 
Sbjct: 61  YGSAGT 66

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 27/118 (22%), Positives = 32/118 (27%), Gaps = 6/118 (5%)

Query: 365 LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
           LP+     L+   P  PPP    P A  P  A A A RA    P   P  P P   G   
Sbjct: 18  LPNGYMTDLQRPQPPPPPPSAASPGAT-PGSAAASAERASTAAPVASPAAPSPGSSGGGG 76

Query: 425 RPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKL-----KPFFWDKVLANP 477
                  +  +               G+G  G   A    L         W K     
Sbjct: 77  FFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKGK 134

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 51.8 bits (123), Expect = 6e-07
 Identities = 15/100 (15%), Positives = 27/100 (27%)

Query: 370 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
            A+L     +    P PPPP P      A    A     +     P      P+P     
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 430 MPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFF 469
               S +         ++++  +   G  +    +     
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 12/100 (12%), Positives = 19/100 (19%), Gaps = 14/100 (14%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAP--------------RPPPAPA 398
           PP                ++ R    +    P  P P                +   A A
Sbjct: 33  PPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAA 92

Query: 399 PAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPR 438
            A  +       G                 P    +K  +
Sbjct: 93  AATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFK 132

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 12/106 (11%), Positives = 20/106 (18%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
               R +P P  P A+     P              P  +PA                  
Sbjct: 24  TDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSN 83

Query: 417 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPK 462
             +   A                      ++  +    E   +  K
Sbjct: 84  AVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAK 129

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 14/77 (18%), Positives = 15/77 (19%)

Query: 356 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
                    +              G   PP        P       R P   P     P 
Sbjct: 148 NKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG 207

Query: 416 PPPRGGPAPRPPPPMPS 432
           P   GGP P  P     
Sbjct: 208 PAGPGGPPPPFPAGQTH 224

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 15/78 (19%), Positives = 18/78 (23%)

Query: 356 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
           K    + E    +   S +        PP     A  P             P     P P
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP 208

Query: 416 PPPRGGPAPRPPPPMPSG 433
             P G P P P       
Sbjct: 209 AGPGGPPPPFPAGQTHHH 226

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 12/87 (13%), Positives = 16/87 (18%), Gaps = 7/87 (8%)

Query: 362 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 421
                                        P    + A  P+      +     P   R  
Sbjct: 147 VNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFP 206

Query: 422 PAP---RPPPPMPSGSKVPRPPLGQKH 445
                  PPPP P+G           H
Sbjct: 207 GPAGPGGPPPPFPAGQ----THHHHHH 229

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 13/80 (16%), Positives = 16/80 (20%)

Query: 337 PLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPA 396
                   + S            G+A P      A+           P   P   R P  
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP 208

Query: 397 PAPAPRAPPPPPKPGPPPPP 416
             P    PP P         
Sbjct: 209 AGPGGPPPPFPAGQTHHHHH 228

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 13/78 (16%), Positives = 15/78 (19%), Gaps = 2/78 (2%)

Query: 341 PPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA 400
                   +Q     +      E     PP                  P   P     P 
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKA-GPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG 207

Query: 401 PRAPPPPPKPGPPPPPPP 418
           P  P  PP P  P     
Sbjct: 208 PAGPGGPP-PPFPAGQTH 224

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 57.3 bits (137), Expect = 2e-08
 Identities = 15/129 (11%), Positives = 25/129 (19%), Gaps = 3/129 (2%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
                              +   H                   +PA    A     +   
Sbjct: 33  NTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAAS 92

Query: 413 PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDK 472
              P      A       PS    P+     +    +   G E    A   K +      
Sbjct: 93  AAKPEE---KASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPD 149

Query: 473 VLANPDNSM 481
           V  N + ++
Sbjct: 150 VPKNTEKTL 158

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.5 bits (135), Expect = 4e-08
 Identities = 19/169 (11%), Positives = 37/169 (21%), Gaps = 5/169 (2%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPA----PAPRAPPPPP 408
              +     A+       A       +          +P    A       A  A  P  
Sbjct: 39  GESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEE 98

Query: 409 KPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP-KTKLKP 467
           K        P     P+      +  +        K ++ +     E   + P  T+   
Sbjct: 99  KASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTL 158

Query: 468 FFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGS 516
              +    + +  + W          N   +      +    NEK    
Sbjct: 159 KPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKE 207

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.1 bits (134), Expect = 4e-08
 Identities = 11/137 (8%), Positives = 28/137 (20%), Gaps = 1/137 (0%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
              +          +G    +    +AE +      +      +          A +P  
Sbjct: 39  GESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEE 98

Query: 396 APAPAP-RAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGA 454
             +      P    KP        +     +     P+          Q     +     
Sbjct: 99  KASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTL 158

Query: 455 EGDANAPKTKLKPFFWD 471
           +       +  +   W+
Sbjct: 159 KPKEIKFNSWEELLKWE 175

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.0 bits (126), Expect = 4e-07
 Identities = 8/106 (7%), Positives = 18/106 (16%)

Query: 359 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
             + E       +       SG           +     A   +               P
Sbjct: 18  YFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASP 77

Query: 419 RGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTK 464
               A        + +  P     +  + +             + K
Sbjct: 78  ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAK 123

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.0 bits (126), Expect = 4e-07
 Identities = 12/112 (10%), Positives = 18/112 (16%), Gaps = 2/112 (1%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
             P  +                                   A           P      
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARE-NKLEKAEGVATASETASPASNEAA 83

Query: 417 PPRGGPAPRPP-PPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
                 A     P   +   V   P  +    S     A+ +A     + KP
Sbjct: 84  TTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKP 135

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 49.2 bits (116), Expect = 5e-06
 Identities = 12/106 (11%), Positives = 20/106 (18%), Gaps = 1/106 (0%)

Query: 363 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 422
           E L  +   +  P                    A            K             
Sbjct: 15  ENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASET 74

Query: 423 A-PRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
           A P       + +         +  +S V A        PK+  + 
Sbjct: 75  ASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKET 120

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 5/101 (4%), Positives = 11/101 (10%)

Query: 367 HEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRP 426
           H                P             +            G               
Sbjct: 10  HHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVA 69

Query: 427 PPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
                +          +   ++S     E  +         
Sbjct: 70  TASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSA 110

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 56.3 bits (136), Expect = 4e-08
 Identities = 22/110 (20%), Positives = 27/110 (24%), Gaps = 3/110 (2%)

Query: 335 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
            P  +   G +G    G       PG+A       P                 PP P  P
Sbjct: 408 PPGARGQAGVMG--FPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP 465

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
                       P   G P P  P G    +P      G      P G +
Sbjct: 466 AGERGEQGPAGSPGFQGLPGPAGPPGEA-GKPGEQGVPGDLGAPGPSGAR 514

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 23/112 (20%), Positives = 29/112 (25%), Gaps = 4/112 (3%)

Query: 335 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
                   G  G    G P    P G+      + P              P   P  +  
Sbjct: 426 AAGEPGKAGERGVP--GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGL 483

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 444
           P PA  P     P + G P      G  G       P   G + P  P G +
Sbjct: 484 PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPR 535

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 20/107 (18%), Positives = 24/107 (22%), Gaps = 1/107 (0%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
            P    P G+ G     G      P G                  +   P          
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 440

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
           PP               GPP P  P G    + P   P    +P P 
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 487

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 25/116 (21%), Positives = 30/116 (25%), Gaps = 6/116 (5%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
            P    P G+ G    QG P    P G             +  P    PP     P  + 
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG 500

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRG-----GPAPRPPPPMPSGSKVPRPPLGQK 444
            P    AP       + G P      G     GP      P   G+K      G  
Sbjct: 501 VPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAP 556

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 32/130 (24%), Positives = 38/130 (29%), Gaps = 4/130 (3%)

Query: 336 PPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
           P     PG  G    +G+      PG         PA     P    PP           
Sbjct: 361 PGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGF 420

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 452
           P P  A   P    + G P PP   G  G         P G   P    G++  + S G 
Sbjct: 421 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480

Query: 453 -GAEGDANAP 461
            G  G A  P
Sbjct: 481 QGLPGPAGPP 490

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 27/113 (23%), Positives = 34/113 (30%), Gaps = 3/113 (2%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
            P  +   G  G+  L GM   +   G         PA  +  P S      P    PR 
Sbjct: 84  PPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG 143

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 444
            P     P AP P    G        G  GP     PP   G+   +   G +
Sbjct: 144 LPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPE 196

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 27/113 (23%), Positives = 30/113 (26%), Gaps = 6/113 (5%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
               +  PG  G     G        G   P       S     P G   PP P      
Sbjct: 345 PAGERGSPGPAGPKGSPGEAGRPGEAG--LPGAKGLTGSPGSPGPDGKTGPPGPAGEDGR 402

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 444
           P    P P A       G P P    G  G A     P P G+  P    G+ 
Sbjct: 403 PGPAGP-PGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA 454

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 26/112 (23%), Positives = 35/112 (31%), Gaps = 7/112 (6%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
           +     P G  G     G   +  PPG                    P P  P       
Sbjct: 417 VMGFPGPKGAAGEPGKAGERGVPGPPGA----VGPAGKDGEAGAQGPPGPAGPAGERGEQ 472

Query: 394 PPAPAPAPRAPPPPP-KPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
            PA +P  +  P P   PG    P  +G P     P  PSG++  R   G++
Sbjct: 473 GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPG-PSGARGERGFPGER 523

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 25/111 (22%), Positives = 30/111 (27%), Gaps = 2/111 (1%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
            P      G  G +   G P    P G+               P    PP PP P   + 
Sbjct: 714 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKG 773

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
            P       AP  P   G        G P  R     P G   P    G++
Sbjct: 774 APGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP-GLPGPSGEPGKQ 823

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 25/113 (22%), Positives = 29/113 (25%), Gaps = 3/113 (2%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
                  PG  G+    G   L    GR                 +  PP P  P  P  
Sbjct: 123 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPG 182

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 444
            P    A     P    G   P   RG  GP        P+G+       G K
Sbjct: 183 FPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 235

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           P      G  G  LQGMP  +   G   P      A  +    +           P  PP
Sbjct: 553 PGAPGSQGAPG--LQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPP 610

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 444
            PA AP         GP  P   RG  G    P PP P+G   P    GQ 
Sbjct: 611 GPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQP 661

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 27/113 (23%), Positives = 30/113 (26%), Gaps = 3/113 (2%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
            P      G  G    +G P    P G          A L         P  P P     
Sbjct: 333 FPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 392

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 444
           PP PA     P P   PG        G  GP      P  +G +    P G  
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 445

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 24/100 (24%), Positives = 27/100 (27%), Gaps = 5/100 (5%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
            P  K   G  G     G P      G   P P        P  P+G      P     P
Sbjct: 696 APGPKGARGSAGPPGATGFPGAAGRVG--PPGPSGNAGPPGPPGPAGKEGSKGPRGETGP 753

Query: 394 PPAPAPA--PRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
              P     P  P P  + G P    P G P    P  + 
Sbjct: 754 AGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIA 793

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 13/98 (13%), Positives = 16/98 (16%), Gaps = 1/98 (1%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
                   G  G     G   L  P G            +     +  P           
Sbjct: 462 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 521

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
                  P    P    G P     +G       P   
Sbjct: 522 ERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ 559

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 27/114 (23%), Positives = 31/114 (27%), Gaps = 3/114 (2%)

Query: 341 PPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
           PPG  G    +G P      G   P              S      P             
Sbjct: 321 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 380

Query: 400 APRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQKHSSSSVG 451
           +P +P P  K GPP P    G  GPA  P     +G      P G        G
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAG 434

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 30/118 (25%), Positives = 34/118 (28%), Gaps = 9/118 (7%)

Query: 336 PPLKPPPGRVGST-LQGMPPLKPPPG-RAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
                P G  G     G    +   G R E  P   P  + P  P GP      P A  P
Sbjct: 721 VGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGP 780

Query: 394 P--PAPAPAPRAPPPPPKPGPPPPPPPRG-----GPAPRPPPPMPSGSKVPRPPLGQK 444
              P               G P     RG     GP+  P    PSG+   R P G  
Sbjct: 781 AGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPM 838

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 27/107 (25%), Positives = 27/107 (25%), Gaps = 1/107 (0%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
            P      G  G     G        G A P     P   R  P     P PP P     
Sbjct: 594 APGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAG 653

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
           PP     P A   P   G      P G   P  PP        P P 
Sbjct: 654 PPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPK 700

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 24/109 (22%), Positives = 27/109 (24%), Gaps = 3/109 (2%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
              +   G  G+   G P      G   P+    PA          P  P  P   R  P
Sbjct: 580 KGDRGDAGPKGA--DGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAP 637

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
                P  P P    GPP      G            G   P  P G  
Sbjct: 638 GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAK-GDAGPPGPAGPA 685

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 23/112 (20%), Positives = 30/112 (26%), Gaps = 3/112 (2%)

Query: 336 PPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
           P  +  PG +G+    G    +  PG         PA  R    +               
Sbjct: 496 PGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGA 555

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 444
           P    AP     P + G    P P+G  G A         G    R   G  
Sbjct: 556 PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPI 607

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 28/143 (19%), Positives = 37/143 (25%), Gaps = 3/143 (2%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
                P    G+T     P  P   R  P P  PP    P                  P 
Sbjct: 11  RVNHEPEPAGGATPGATLPKSPSQLRKGP-PVPPPPKHTPSKEVKQEQILSLFEDTFVPE 69

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAE 455
                P  P    +      P    G            +    P +  +   ++V    E
Sbjct: 70  ISVTTPSQPAEASEVAGGTQPAA--GAQEPGETAASEAASSSLPAVVVETFPATVNGTVE 127

Query: 456 GDANAPKTKLKPFFWDKVLANPD 478
           G + A +  L P F  KV A  D
Sbjct: 128 GGSGAGRLDLPPGFMFKVQAQHD 150

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 53.2 bits (126), Expect = 7e-08
 Identities = 20/115 (17%), Positives = 32/115 (27%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
            P        EP     P +  P  PS     PP PP P+  P+            +   
Sbjct: 7   TPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTF 66

Query: 413 PPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
            P         P     +  G++          +++S  A +   A   +T    
Sbjct: 67  VPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 121

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 16/100 (16%), Positives = 21/100 (21%)

Query: 351 GMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 410
           G P   P             A+     P  P      PP P PP                
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61

Query: 411 GPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSV 450
                 P      P  P      +   +P  G +    + 
Sbjct: 62  FEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETA 101

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 13/83 (15%), Positives = 16/83 (19%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
             P   P       P PA         PK        P   P P+  P      +     
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61

Query: 441 LGQKHSSSSVGAGAEGDANAPKT 463
                            A A + 
Sbjct: 62  FEDTFVPEISVTTPSQPAEASEV 84

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 14/136 (10%), Positives = 24/136 (17%), Gaps = 22/136 (16%)

Query: 342 PGRVGSTLQGMPPLKPPPGRAEPL-----------PHEPPAS-----------LRPHPPS 379
           P R G  + G+P   P     +             P +   +           LR     
Sbjct: 274 PTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQ 333

Query: 380 GPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 439
               P P       P                            A      +      P  
Sbjct: 334 DTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTD 393

Query: 440 PLGQKHSSSSVGAGAE 455
                  ++ +    +
Sbjct: 394 VAASVLQATVLSQPVQ 409

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 54.9 bits (132), Expect = 7e-08
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 364 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 423
            +  +       +PP G  PPP   P    PP   P P+  PP   P PP   PP+G P 
Sbjct: 376 AMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYP-PQGYPPQGYPPPPQGAPPQGAPP 434

Query: 424 PRPP 427
             PP
Sbjct: 435 AAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 362 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP--PPAPAPAPRAPPPPPKPGPPPPPPPR 419
           A+    +   ++           PP   AP P   P     P+  PP   P    PPPP+
Sbjct: 366 ADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQ 425

Query: 420 GGPAPRPPPPMP 431
           G P    PP  P
Sbjct: 426 GAPPQGAPPAAP 437

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 26/113 (23%), Positives = 31/113 (27%), Gaps = 3/113 (2%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGP-PPPPPPPPAP 391
           Q  P +           +     +      E     P A                   A 
Sbjct: 328 QTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAA 387

Query: 392 RPPPAPAPAPRAPPP--PPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLG 442
            PP   AP P+  PP   P  G PP   P  G  P P    P G+    PP G
Sbjct: 388 YPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 12/99 (12%)

Query: 324 TAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPH--PPSGP 381
           T     E+    P       ++   +  M  ++       P  + PP    P    P   
Sbjct: 352 TEIPAGESSDAAPS--ADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQG 409

Query: 382 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 420
            PP   PP   PPP     P+  PP    G PP  PP+G
Sbjct: 410 YPPQGYPPQGYPPP-----PQGAPP---QGAPPAAPPQG 440

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 17/106 (16%), Positives = 25/106 (23%), Gaps = 2/106 (1%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
            P      R       MP       + + L     A +         P P PPP  +   
Sbjct: 16  APTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQA 75

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
              P     P P +     P   +  P  R    +   +       
Sbjct: 76  PKQPPKPKKPKPQEKKKKQPAKTK--PGKRQRMALKLEADRLFDVK 119

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 17/98 (17%), Positives = 24/98 (24%), Gaps = 3/98 (3%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
               P    + S +Q +          +    + P   RP PP       P  P     P
Sbjct: 29  AAPMPARNGLASQIQQLTTAVSALVIGQATRPQNP---RPRPPPRQKKQAPKQPPKPKKP 85

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 433
            P    +  P   KPG       +             G
Sbjct: 86  KPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDG 123

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 15/87 (17%), Positives = 18/87 (20%), Gaps = 16/87 (18%)

Query: 374 RPHPPSGPPPPPPPPPAPRPPPAPA----------------PAPRAPPPPPKPGPPPPPP 417
            P     P       P P      +                      P P  P       
Sbjct: 16  APTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQA 75

Query: 418 PRGGPAPRPPPPMPSGSKVPRPPLGQK 444
           P+  P P+ P P     K P      K
Sbjct: 76  PKQPPKPKKPKPQEKKKKQPAKTKPGK 102

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 14/81 (17%), Positives = 16/81 (19%), Gaps = 19/81 (23%)

Query: 383 PPPPPPPAPRPPPAPAPAPRAPPPP-------------------PKPGPPPPPPPRGGPA 423
           P P P    RP      AP                               P P P     
Sbjct: 13  PFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQK 72

Query: 424 PRPPPPMPSGSKVPRPPLGQK 444
            + P   P   K       +K
Sbjct: 73  KQAPKQPPKPKKPKPQEKKKK 93

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 54.4 bits (129), Expect = 1e-07
 Identities = 26/131 (19%), Positives = 35/131 (26%), Gaps = 2/131 (1%)

Query: 339 KPPPGRVGSTLQGMPPLKPP-PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAP 397
           +P P R+           P  P    P      +  R  PP+ P      PPA R     
Sbjct: 14  RPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLS 73

Query: 398 APAPRAPPPPPKP-GPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEG 456
                +P  P  P  P  P P +      P    P      +        +S +    E 
Sbjct: 74  VDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRAREL 133

Query: 457 DANAPKTKLKP 467
            A     K   
Sbjct: 134 GARVRALKASA 144

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 48.6 bits (114), Expect = 7e-06
 Identities = 25/137 (18%), Positives = 35/137 (25%), Gaps = 2/137 (1%)

Query: 333 QVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPR 392
           +   P +P      S   G      PP         PPA  R          P  P AP 
Sbjct: 28  RTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPD 87

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA--PRPPPPMPSGSKVPRPPLGQKHSSSSV 450
            P  P+P  +     P  G PP                 +    ++       K S+   
Sbjct: 88  IPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDA 147

Query: 451 GAGAEGDANAPKTKLKP 467
           G     +A     +   
Sbjct: 148 GESCTPEAEGRPEEPCG 164

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 17/73 (23%), Positives = 23/73 (31%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
              GPP   PP  A R P    PA RAP            PP      +  PP     ++
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 437 PRPPLGQKHSSSS 449
               +    +  +
Sbjct: 73  SVDEVSSPSTPEA 85

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 21/83 (25%), Positives = 25/83 (30%), Gaps = 1/83 (1%)

Query: 385 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
               P P     P  A R  P P +P    P     G   R  PP   G    RPP  ++
Sbjct: 11  ARRRPGPPRIAPPKLACR-TPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69

Query: 445 HSSSSVGAGAEGDANAPKTKLKP 467
              S     +     AP     P
Sbjct: 70  LRLSVDEVSSPSTPEAPDIPACP 92

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQ--KH 445
           P+ PPAP   P  P     P   P  P      P  PP   S +  PR P  +   H
Sbjct: 2   PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNH 58

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 17/61 (27%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
           P  PP P   P  P     P   P  P  P      PP       APR P       ++P
Sbjct: 2   PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPA-----DRLP 56

Query: 438 R 438
            
Sbjct: 57  N 57

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 13/106 (12%), Positives = 27/106 (25%)

Query: 344 RVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRA 403
           ++ +  Q +  +      +  + +   AS          PP     +P      +     
Sbjct: 3   KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 404 PPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 449
                        P R   +  P P   S   +        + +SS
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSS 108

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 51.5 bits (123), Expect = 7e-07
 Identities = 14/110 (12%), Positives = 19/110 (17%), Gaps = 6/110 (5%)

Query: 331 NGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 390
             QV+  +        +        K  P          P +     P    P     P 
Sbjct: 7   MSQVIQAMPSDLTISSAIQNIHSASKGLP----LNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
                        P    K     P P    P            +   P 
Sbjct: 63  HGSLQGYQTYGHFPSRAIK--SEYPDPYTSSPESIMGYSYMDSYQTSSPA 110

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 1/107 (0%)

Query: 355 LKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPP 414
           L+      + +P +   S             P   A  PP     +P    P      PP
Sbjct: 4   LEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPIS-MTMPP 62

Query: 415 PPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAP 461
               +G       P     S+ P P      S            ++P
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSP 109

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 6/78 (7%), Positives = 11/78 (14%)

Query: 363 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 422
           +   ++            P   P          +    P + P                 
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298

Query: 423 APRPPPPMPSGSKVPRPP 440
                      S    P 
Sbjct: 299 PASVEYHAGMKSLNKAPY 316

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 51.9 bits (123), Expect = 4e-07
 Identities = 8/73 (10%), Positives = 12/73 (16%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
                 R +  +     P      + P +             P   P    R        
Sbjct: 235 LFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVN 294

Query: 428 PPMPSGSKVPRPP 440
           P     S      
Sbjct: 295 PVSTPASVEYHAG 307

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 51.1 bits (121), Expect = 8e-07
 Identities = 10/86 (11%), Positives = 16/86 (18%)

Query: 364 PLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPA 423
            L +    S +    +  P    P  +P               P                
Sbjct: 234 SLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESV 293

Query: 424 PRPPPPMPSGSKVPRPPLGQKHSSSS 449
                P           L +   SS+
Sbjct: 294 NPVSTPASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 50.3 bits (119), Expect = 1e-06
 Identities = 15/93 (16%), Positives = 17/93 (18%)

Query: 342 PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAP 401
           P  V   L      +    RA         S    P S             P  AP    
Sbjct: 226 PELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERT 285

Query: 402 RAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
           R            P         +     P  S
Sbjct: 286 RRSETESVNPVSTPASVEYHAGMKSLNKAPYSS 318

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 12/93 (12%), Positives = 16/93 (17%), Gaps = 1/93 (1%)

Query: 360 GRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR 419
           G    L +   +       S         P    P     +          G  P   P 
Sbjct: 223 GHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPT 282

Query: 420 GGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 452
                R      +    P          S   A
Sbjct: 283 -ERTRRSETESVNPVSTPASVEYHAGMKSLNKA 314

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 13/102 (12%), Positives = 16/102 (15%)

Query: 318 FGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHP 377
                G           L  L     +          + P              S+   P
Sbjct: 218 IQTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVP 277

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR 419
            S P             P   PA        K     P    
Sbjct: 278 FSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 44.9 bits (105), Expect = 7e-05
 Identities = 10/88 (11%), Positives = 17/88 (19%)

Query: 372 SLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
            L                      +P  +P +             P              
Sbjct: 232 DLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETE 291

Query: 432 SGSKVPRPPLGQKHSSSSVGAGAEGDAN 459
           S + V  P   + H+       A   +N
Sbjct: 292 SVNPVSTPASVEYHAGMKSLNKAPYSSN 319

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 17/76 (22%), Positives = 20/76 (26%)

Query: 362 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 421
           A P     P        +   P  P PPA    P   P P+    P  P PP P      
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 422 PAPRPPPPMPSGSKVP 437
            A            + 
Sbjct: 63  VAAGHATLREHLRDIK 78

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 52.7 bits (126), Expect = 4e-07
 Identities = 19/84 (22%), Positives = 25/84 (29%)

Query: 388 PPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSS 447
           P AP  P  P  A         P  P PP     P   P P      K P PP     ++
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 448 SSVGAGAEGDANAPKTKLKPFFWD 471
           +     A    +    K +    +
Sbjct: 62  TVAAGHATLREHLRDIKAENTDAN 85

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 17/85 (20%), Positives = 21/85 (24%)

Query: 385 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
           P  P +P  P   A    A   P  P PP       G         P     PRP     
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 445 HSSSSVGAGAEGDANAPKTKLKPFF 469
             ++      E   +         F
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANF 86

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 19/98 (19%), Positives = 25/98 (25%), Gaps = 12/98 (12%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPA-PRAPPPPPKPG 411
           P     PG          A+  P  P+ P     P   P+P     P  P  P P     
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 412 PPPPPPPRGGPAPRPPP-----------PMPSGSKVPR 438
                        R              P P+G+ V +
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQ 99

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 48.8 bits (116), Expect = 7e-06
 Identities = 15/74 (20%), Positives = 19/74 (25%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
           P  P +   P   +        P  P PP   A     P P     P  P PPR      
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 426 PPPPMPSGSKVPRP 439
                 +  +    
Sbjct: 62  TVAAGHATLREHLR 75

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 48.8 bits (116), Expect = 8e-06
 Identities = 16/84 (19%), Positives = 21/84 (25%)

Query: 363 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 422
           +P     P +      +      P  PAP    A       P    KP  P PP P G  
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 423 APRPPPPMPSGSKVPRPPLGQKHS 446
           A            +         +
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDA 84

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP-PPMPSGSKV 436
           P+ P  P  P  A     A        PP     P   P P+    P+ P PP P+G   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 437 PRPPLGQKHSSSSVGAGAEGD 457
                            AE  
Sbjct: 62  TVAAGHATLREHLRDIKAENT 82

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 20/78 (25%), Gaps = 2/78 (2%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPA-PAPRAPPPPPKPGP-PPPPPPRGGPAPRPPPPMPS 432
           P  P+ P  P            PA PAP A    P   P P        P P  P    +
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 433 GSKVPRPPLGQKHSSSSV 450
                   L +       
Sbjct: 62  TVAAGHATLREHLRDIKA 79

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 52.6 bits (125), Expect = 4e-07
 Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 2/79 (2%)

Query: 347 STLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP 406
              +  P L       E LP   PAS    P +     P  P    P     PA   P  
Sbjct: 300 QMAKDYPGLYKTAVTQEALPGSAPAS-EAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGA 358

Query: 407 P-PKPGPPPPPPPRGGPAP 424
                   P P     PAP
Sbjct: 359 AEAAGSVEPAPVEEVAPAP 377

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 18/85 (21%), Positives = 21/85 (24%), Gaps = 2/85 (2%)

Query: 356 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP-PPAPAPAPRAPPPPPKPGPPP 414
           KP  G      +           + P   P    AP     A   AP    P  +  P  
Sbjct: 294 KPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAA 353

Query: 415 PPPPRGGPAPRPPPPMPSGSKVPRP 439
             P     A    P  P     P P
Sbjct: 354 AEPGAAEAAGSVEPA-PVEEVAPAP 377

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 20/84 (23%), Gaps = 6/84 (7%)

Query: 349 LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 408
           L G    K  PG  +    +         P   P     P A       APA   P    
Sbjct: 296 LYGAQMAKDYPGLYKTAVTQEA------LPGSAPASEAAPAAATEAAPEAPAQEVPAAEA 349

Query: 409 KPGPPPPPPPRGGPAPRPPPPMPS 432
            P    P       +  P P    
Sbjct: 350 VPAAAEPGAAEAAGSVEPAPVEEV 373

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 19/72 (26%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           P L        +     P  +  P  A     E PA   P   + P    P         
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365

Query: 396 APAPAPRAPPPP 407
            PAP     P P
Sbjct: 366 EPAPVEEVAPAP 377

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 52.2 bits (123), Expect = 5e-07
 Identities = 26/111 (23%), Positives = 35/111 (31%), Gaps = 5/111 (4%)

Query: 309 IGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHE 368
             K  G  ++  VG T+ + N       P+ P           +        RA  +P  
Sbjct: 388 AIKMSGPNNYVTVGATSAT-NVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKV 446

Query: 369 PPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPR 419
                +P PP  P  P  P       P   PAP AP    +P PP      
Sbjct: 447 TKE--KPTPPVKPTAPTKPTY-ETEKPLK-PAPVAPNYEKEPTPPTRLEHH 493

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 50.7 bits (119), Expect = 2e-06
 Identities = 19/103 (18%), Positives = 25/103 (24%), Gaps = 4/103 (3%)

Query: 342 PGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPP----PPPPAPRPPPAP 397
                        +      A  +       + P   +     P          R    P
Sbjct: 385 GAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVP 444

Query: 398 APAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
                 P PP KP  P  P        +P P  P+  K P PP
Sbjct: 445 KVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPP 487

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 48.4 bits (113), Expect = 8e-06
 Identities = 19/110 (17%), Positives = 22/110 (20%), Gaps = 6/110 (5%)

Query: 318 FGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHP 377
           +GA        N    V          V               +              + 
Sbjct: 384 YGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNV 443

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
           P      P PP  P  P  P       P  P P  P          P PP
Sbjct: 444 PKVTKEKPTPPVKPTAPTKPTY-ETEKPLKPAPVAPNYE-----KEPTPP 487

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 47.6 bits (111), Expect = 1e-05
 Identities = 13/100 (13%), Positives = 21/100 (21%)

Query: 338 LKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAP 397
           +  P   V         + P          +     +P+              P+     
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK 450

Query: 398 APAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
              P  P  P KP      P +  P        P+     
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 44.1 bits (102), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 17/81 (20%), Gaps = 3/81 (3%)

Query: 354 PLKPPPGRAEPLPHEPPASLRPHP--PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPG 411
              P     +    + P               P      P PP  P  AP  P    +  
Sbjct: 412 SDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKP-TAPTKPTYETEKP 470

Query: 412 PPPPPPPRGGPAPRPPPPMPS 432
             P P          PP    
Sbjct: 471 LKPAPVAPNYEKEPTPPTRLE 491

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 382 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
              PP      P  AP PA    P PP  G  PPPP  GG  P        G   P P 
Sbjct: 54  SKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPP------VDGGSPPPPS 106

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 375 PHPPSGPPPPP--PPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
             PP   P PP   PPPA    P   PA    PPPP  G  PP      P P
Sbjct: 55  KSPPGATPAPPGAAPPPAAGGSP-SPPADGGSPPPPADGGSPPVDGGSPPPP 105

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 356 KPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
           K PPG     P   P      PP+    P PP     PPP   PA    PP     PPPP
Sbjct: 55  KSPPGATPAPPGAAP------PPAAGGSPSPPADGGSPPP---PADGGSPPVDGGSPPPP 105

Query: 416 P 416
            
Sbjct: 106 S 106

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 29/113 (25%), Positives = 34/113 (30%), Gaps = 3/113 (2%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
            P    P G  G     G P  K   G   P+  + P   +    +  PP P     P  
Sbjct: 635 EPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAG 694

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP--SGSKVPRPPLGQK 444
           P   A        P   G   PP P G   P  PP      G + PR   G  
Sbjct: 695 PRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPV 747

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 28/111 (25%), Gaps = 4/111 (3%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           P      G VG  L G      P G            ++       P  PP       P 
Sbjct: 423 PGKPGEKGNVG--LAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPA 480

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP--PMPSGSKVPRPPLGQK 444
            PA     P      G    P P G    R PP     +G   P    G  
Sbjct: 481 GPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPS 531

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 20/110 (18%), Positives = 27/110 (24%), Gaps = 3/110 (2%)

Query: 335 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
               +   G +G    G       PG+     +   A  R  P          PP  +  
Sbjct: 401 PAGPRGEAGAIG--FPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGV 458

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
                      PP   G P P  P G         +  G      P G +
Sbjct: 459 QGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLH-GEFGLPGPAGAR 507

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 28/110 (25%), Positives = 31/110 (28%), Gaps = 2/110 (1%)

Query: 336 PPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
           P L+   G  G     G P  +  PG A P         R        P P      R P
Sbjct: 453 PGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGP 512

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
           P    A     P    GP  PP P G            G+  P  P G  
Sbjct: 513 PGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPA-GAPGPAGPPGIP 561

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 22/105 (20%), Positives = 24/105 (22%), Gaps = 2/105 (1%)

Query: 341 PPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
             G VG     G      P G A P      A                PP P     P  
Sbjct: 668 EQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPG 727

Query: 400 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
            P A       GP     P G            G    + P G+ 
Sbjct: 728 PPGAAGKEGIRGPRGDQGPVGRSGETGATGPT-GFVGEKGPTGEP 771

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 22/111 (19%), Positives = 27/111 (24%), Gaps = 5/111 (4%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
           L      PG  G+   +G P  +   G     P        P  P G             
Sbjct: 494 LHGEFGLPGPAGARGERGPPGERGAAG--PTGPIGSRGPSGPPGPDGNKGEAGAVGPAGA 551

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
           P    P P  P      G P     +G P         +G    R   G  
Sbjct: 552 PGPAGP-PGIPGERGVAGVPGGKGEKGAPGL-RGDTGATGRDGARGLPGAI 600

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 19/101 (18%), Positives = 22/101 (21%), Gaps = 1/101 (0%)

Query: 341 PPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
             G  G    QG+       G            +        P     PP  R PP    
Sbjct: 773 SAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVG 832

Query: 400 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
            P     P + G    P   G P     P        P   
Sbjct: 833 NPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNA 873

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 29/107 (27%), Gaps = 3/107 (2%)

Query: 341 PPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
            PG+ G    +G+P  +   G            +R H         P  P  +  P    
Sbjct: 65  HPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPG 124

Query: 400 APRAPPPPPKPGPPPPPPPRG--GPAPRPPPPMPSGSKVPRPPLGQK 444
               P      G P      G  GPA         G   P  P+G  
Sbjct: 125 ENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSA 171

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 24/111 (21%), Positives = 29/111 (26%), Gaps = 4/111 (3%)

Query: 336 PPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHP-PSGPPPPPPPPPAPRP 393
           P    P G+ G   L G+     P G A P              P+G P  P        
Sbjct: 375 PGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGL 434

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
             A              GPP     +G       P  P G +    P G  
Sbjct: 435 AGARGAPGPDGNNGA-QGPPGLQGVQGEKGE-QGPAGPPGFQGLPGPAGPA 483

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 25/110 (22%), Positives = 29/110 (26%), Gaps = 2/110 (1%)

Query: 336 PPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
           P      G  G    +G P     PG      H     L   P +      P  P     
Sbjct: 69  PGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGT 128

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
           P    A   P    + G P P   RG       P  P+G      P G  
Sbjct: 129 PGQKGARGLPGERGRVGAPGPAGARGSDGS-VGPVGPAGPIGSAGPPGFP 177

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 24/111 (21%), Positives = 29/111 (26%), Gaps = 2/111 (1%)

Query: 335 LPPLKPPPGRVGST-LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
                 PPG  G+   +G+P      G   P      +              P  P    
Sbjct: 308 PAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMG 367

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
           P     +P    P  K GP   P   G P P  P     G        G K
Sbjct: 368 PRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPR-GEAGAIGFPGPK 417

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 26/114 (22%), Positives = 33/114 (28%), Gaps = 5/114 (4%)

Query: 335 LPPLKPPPGRVGST----LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 390
           +      PG +G       +G P     PG               +         P    
Sbjct: 806 VAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKG 865

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
            R  P  A  P A  P    G P     RG P P      P+G+  PR P G +
Sbjct: 866 ERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVG-PAGAVGPRGPSGPQ 918

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 21/119 (17%), Positives = 25/119 (21%), Gaps = 9/119 (7%)

Query: 335 LPPLKPPPGRVGST----LQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 390
           +       GR G      L G P      G+                       P     
Sbjct: 704 MTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVG 763

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR-----PPPPMPSGSKVPRPPLGQK 444
            + P     +   P PP   G    P   G P  R     P      G   P    G  
Sbjct: 764 EKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPP 822

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 34/117 (29%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPG----RAEPLPHEPPASLRPHPPSGPPPPPPPPPAP 391
           P +K  PG  G    G P  K   G    R       P  +       GP  P  P  + 
Sbjct: 114 PGVKGEPGAPG--ENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSA 171

Query: 392 RPPPAP-APAPRAPP-PPPKPGPPPPPPPRGGPAPRPPP--PMPSGSKVPRPPLGQK 444
            PP  P AP P+    P   PGP  P  PRG            P G+  P    G K
Sbjct: 172 GPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAK 228

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 29/129 (22%), Positives = 35/129 (27%), Gaps = 5/129 (3%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
                 PG  G    G+P  +   G       +    LR    +         P     P
Sbjct: 546 VGPAGAPGPAG--PPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAP 603

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPR--PPPPMPSGSKVPRPPLGQKHSSSSVG-A 452
            PA            GP  P   RG    R  P P  PSG   P    GQ  +    G  
Sbjct: 604 GPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTK 663

Query: 453 GAEGDANAP 461
           G  G+    
Sbjct: 664 GPVGEQGPV 672

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 24/110 (21%), Positives = 33/110 (30%), Gaps = 6/110 (5%)

Query: 335 LPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPP 394
           +  +  P G  G    G   ++ P G  +      P  + P    G P    P     P 
Sbjct: 332 VAGVMGPAGSRG--TSGPAGVRGPNG--DSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPV 387

Query: 395 PAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQK 444
             P      P P    GP       G P P+ P   P G    +  +G  
Sbjct: 388 GLPGI-DGRPGPIGPAGPRGEAGAIGFPGPKGPTGEP-GKPGEKGNVGLA 435

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 20/96 (20%), Positives = 23/96 (23%), Gaps = 2/96 (2%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
           P    PPGR G    G    +  PG A P     P      P        P P     P 
Sbjct: 849 PGNDGPPGRDG--QPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPA 906

Query: 396 APAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
                     P    G    P  +G    +      
Sbjct: 907 GAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHN 942

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 49.9 bits (119), Expect = 5e-06
 Identities = 13/48 (27%), Positives = 14/48 (29%)

Query: 382 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
           P    P P P    +   AP A P  P      P P      P  P  
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 14/53 (26%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
               P P P    +    PA APA  A P       P    P       P   
Sbjct: 95  IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 11/51 (21%), Positives = 12/51 (23%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
           P    P P P   +       A       P   P P P       P    P
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 48.0 bits (114), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 14/48 (29%)

Query: 370 PASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 417
           P    P P           PA  P    APA    P P   GP  P  
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 48.0 bits (114), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 14/51 (27%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
           P    P P       A A    AP  P  P   P P P       P    P
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 362 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
            +  P E      P P +       P  AP  P APA AP   P    P  P    P
Sbjct: 90  YDVEPIEDEPE--PTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 16/55 (29%), Positives = 18/55 (32%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
           P    P P P  A     APA AP AP  P     P P         +  P   +
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTAT 148

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 15/48 (31%), Positives = 17/48 (35%)

Query: 359 PGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPP 406
           P   EP P    AS     P+  P  P  P A   P   +  P AP  
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 15/55 (27%), Positives = 19/55 (34%)

Query: 363 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPP 417
           EP+  EP  +      +   P   P     P  APAPAP +  P       P   
Sbjct: 93  EPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 10/54 (18%), Positives = 14/54 (25%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 410
           P     EP P    ++      +   P  P       P +  PA      P   
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 43.4 bits (102), Expect = 5e-04
 Identities = 9/55 (16%), Positives = 12/55 (21%)

Query: 391 PRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKH 445
               P P PA  +         P  P          P      + V   P+    
Sbjct: 95  IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATD 149

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 48.8 bits (115), Expect = 6e-06
 Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
            P +++      GPP      P+            +        PPP  P     +    
Sbjct: 3   TPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPD--ASSSSSS 60

Query: 428 PPMPSGSKVPRP 439
             +P+      P
Sbjct: 61  FAVPTIHFKESP 72

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 9/65 (13%), Positives = 12/65 (18%)

Query: 366 PHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
                A         P      P   R  P             +  PP  P      +  
Sbjct: 2   LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61

Query: 426 PPPPM 430
             P +
Sbjct: 62  AVPTI 66

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
             P S         P      +P+   ++P    K            P P  P    S S
Sbjct: 2   LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSR--APPPTNPDASSSSS 59

Query: 435 KVPRPPLGQKHS 446
               P +  K S
Sbjct: 60  SFAVPTIHFKES 71

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 44.9 bits (105), Expect = 9e-05
 Identities = 10/63 (15%), Positives = 13/63 (20%)

Query: 363 EPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGP 422
            PL      S+   P      P     +P      +        PP   P          
Sbjct: 3   TPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFA 62

Query: 423 APR 425
            P 
Sbjct: 63  VPT 65

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 42.6 bits (99), Expect = 5e-04
 Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 5/77 (6%)

Query: 348 TLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPP 407
           +L  +  +        P   +   S+    P+            R PP     P  P   
Sbjct: 1   SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPP-----PTNPDAS 55

Query: 408 PKPGPPPPPPPRGGPAP 424
                   P      +P
Sbjct: 56  SSSSSFAVPTIHFKESP 72

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 23/113 (20%), Positives = 31/113 (27%), Gaps = 8/113 (7%)

Query: 393 PPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGA 452
             P  A   R+   PP      P   R  P  R      S +    PP     SSSS   
Sbjct: 2   LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61

Query: 453 GAEGDANAPKTKLKPFFWDK----VLANPDNSMVWHQIKSGSFQFNEEMIETL 501
                      K  PF+  +     L           + S  F+ ++     L
Sbjct: 62  AVP----TIHFKESPFYKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLL 110

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 49.6 bits (118), Expect = 6e-06
 Identities = 13/48 (27%), Positives = 13/48 (27%)

Query: 382 PPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
           P        P    APAP P A  P P    P P       A      
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 49.2 bits (117), Expect = 7e-06
 Identities = 12/47 (25%), Positives = 12/47 (25%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
                   PA    PAP PA  AP P      P         A    
Sbjct: 95  SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 49.2 bits (117), Expect = 7e-06
 Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 362 AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPP 418
             P P E  A     P     P P P  +   P A APAP A   P          P
Sbjct: 90  YTPDPSELAAK--EEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 48.8 bits (116), Expect = 8e-06
 Identities = 10/47 (21%), Positives = 11/47 (23%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP 424
           PS       P     P P PA +  AP            P       
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 12/53 (22%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPP 429
                   P    AP P PA +    A   P       P       A  P   
Sbjct: 95  SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 46.5 bits (110), Expect = 4e-05
 Identities = 11/54 (20%), Positives = 11/54 (20%)

Query: 374 RPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPP 427
            P P        P       P   A AP      P P     P          P
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 46.1 bits (109), Expect = 7e-05
 Identities = 7/51 (13%), Positives = 9/51 (17%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 431
           P          +          + P P    P P        A       P
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 12/57 (21%), Positives = 13/57 (22%), Gaps = 3/57 (5%)

Query: 384 PPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPP 440
           P        P    APAP      P    P    P    A  P       +  P   
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAP---APAAAAPAPVAAAAPAAAAAEIADEPVKA 147

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 12/54 (22%), Positives = 14/54 (25%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP 410
           P    A+  P +  A       S P P    P         A A      P K 
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKA 147

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 8/56 (14%), Positives = 8/56 (14%), Gaps = 2/56 (3%)

Query: 379 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAP--RPPPPMPS 432
            G                                 P  P     A   R    MPS
Sbjct: 79  PGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPS 134

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 6/60 (10%), Positives = 8/60 (13%), Gaps = 2/60 (3%)

Query: 368 EPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP--PPRGGPAPR 425
           + P                                  P  P       P       P+ R
Sbjct: 77  DAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVR 136

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 12/119 (10%), Positives = 18/119 (15%), Gaps = 34/119 (28%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPP----------- 405
              G+ +    +   +             P  PA      P     A P           
Sbjct: 85  TFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGV 144

Query: 406 -----------------------PPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPL 441
                                         P     +  PA   P          R  +
Sbjct: 145 DIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKM 203

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 22/104 (21%), Positives = 29/104 (27%), Gaps = 2/104 (1%)

Query: 334 VLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRP 393
           + P L P  G  G     +  L  P     P      + + PH  S P  P        P
Sbjct: 38  LHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP 97

Query: 394 PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVP 437
             +    P +     K  PP            P   M S +K  
Sbjct: 98  QLSSPMNPVSSSEDIK--PPLGLNGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 22/111 (19%), Positives = 25/111 (22%), Gaps = 2/111 (1%)

Query: 357 PPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPP 416
                  P      A+   HP  GP    P       P +   +P     PP      P 
Sbjct: 20  VNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQ--LHSPISTLSSPINGMGPPFSVISSPM 77

Query: 417 PPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKP 467
            P     P  P    S             SSS       G     K    P
Sbjct: 78  GPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 21/120 (17%), Positives = 29/120 (24%), Gaps = 5/120 (4%)

Query: 331 NGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPA 390
           N  +  P         S    + P    PG+     H P ++L        PP       
Sbjct: 21  NSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQ----LHSPISTLSSPINGMGPPFSVISSP 76

Query: 391 PRPPPAPAPA-PRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 449
             P     P  P        P    P  P        PP   +G            +S +
Sbjct: 77  MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFT 136

>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Length = 398

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 19/62 (30%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGP 412
             L     + +    EP A++   PPS      P     R  P    A      PP P  
Sbjct: 173 SFLTDLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPAR 232

Query: 413 PP 414
           P 
Sbjct: 233 PE 234

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 18/80 (22%), Positives = 21/80 (26%), Gaps = 8/80 (10%)

Query: 353 PPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPP-------APRPPPAPAPAPRAPP 405
             L PP    +    E   + R   P  P P   P         A   P      P    
Sbjct: 7   CRLDPPSQDLKDGTQEEA-TKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRA 65

Query: 406 PPPKPGPPPPPPPRGGPAPR 425
             P   P PP   +G P   
Sbjct: 66  EVPTKPPLPPARTQGTPVHL 85

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 3/71 (4%)

Query: 372 SLRPHPPSGPPPPPPPPPAPRP---PPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 428
           + R  PPS          A +    P  P P                 P +G   P    
Sbjct: 6   TCRLDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRA 65

Query: 429 PMPSGSKVPRP 439
            +P+   +P  
Sbjct: 66  EVPTKPPLPPA 76

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 4/53 (7%), Positives = 4/53 (7%)

Query: 373 LRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
           LR  P                                             A  
Sbjct: 255 LRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAA 307

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 6/58 (10%), Positives = 11/58 (18%)

Query: 385 PPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLG 442
           P          A              G           + R  P   + +++ R    
Sbjct: 259 PLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDN 316

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 7/57 (12%), Positives = 12/57 (21%)

Query: 365 LPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGG 421
           L  +P  + +    +                  A A        +  P      R G
Sbjct: 255 LRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIG 311

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 5/53 (9%), Positives = 6/53 (11%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSG 433
           P                    R      +          G   P        G
Sbjct: 259 PLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIG 311

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.9 bits (108), Expect = 6e-05
 Identities = 28/133 (21%), Positives = 40/133 (30%), Gaps = 2/133 (1%)

Query: 319  GAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPP--PGRAEPLPHEPPASLRPH 376
             +   T+ S++       P  P       +     P   P  P  +   P   P S    
Sbjct: 1568 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1627

Query: 377  PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
            P S    P  P  +P  P     +P   P  P   P  P      P+  P  P  S +  
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687

Query: 437  PRPPLGQKHSSSS 449
               P    +S +S
Sbjct: 1688 SYSPTSPNYSPTS 1700

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 54/304 (17%), Positives = 83/304 (27%), Gaps = 62/304 (20%)

Query: 150  APRQNQHLILPRSLAEIPNRASTPAPAPAVAPAPVHARATAPATSPTQDAKPRPRTP-PT 208
            +   N  L +   L   P   S    A A             ATSP       P +P   
Sbjct: 1477 SGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG 1536

Query: 209  PFFPSVSSSSPTVGDNS-----TTNSGSGTSARADDKTNHHNTVIIAVVVTAAVTFVAAA 263
               P  S +SPT    S     T+ S S TS      +  +                   
Sbjct: 1537 VSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSY------------------- 1577

Query: 264  LLFLCCSRFCRTGSGGRQNDERPLLSLSLSDYSVGSGNSKEEKLDIGKFDGTASFGAVGG 323
                       + +    +   P  S +   YS  S +             + +  +   
Sbjct: 1578 -----------SPTSPSYSPTSPSYSPTSPSYSPTSPSY------------SPTSPSYSP 1614

Query: 324  TAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPP--PGRAEPLPHEPPASLRPHPPSGP 381
            T+ S++       P  P       +     P   P  P  +   P   P S    P S  
Sbjct: 1615 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPS 1674

Query: 382  PPPPPPPPAPR----PPPAPAPAPRAP---PPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
              P  P  +P      P +P  +P +P   P  P   P  P       +P+      + +
Sbjct: 1675 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSP-----AYSPKQDEQKHNEN 1729

Query: 435  KVPR 438
            +  R
Sbjct: 1730 ENSR 1733

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 31/140 (22%), Positives = 40/140 (28%), Gaps = 7/140 (5%)

Query: 314  GTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASL 373
                F  +  +  +    G          G   S           PG     P   P S 
Sbjct: 1488 DELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSP 1547

Query: 374  RPHPPSGPPPPPPPPPAPRPP----PAPAPAPRAPP-PPPKPGPPPPPPPRGGPAPRPPP 428
               P S    P  P  +P  P     +P+ +P +P   P  P   P  P     +P   P
Sbjct: 1548 TYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607

Query: 429  PMPSGSKVPRPPLGQKHSSS 448
              PS S  P  P     S S
Sbjct: 1608 TSPSYS--PTSPSYSPTSPS 1625

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.9 bits (103), Expect = 3e-04
 Identities = 29/145 (20%), Positives = 37/145 (25%), Gaps = 14/145 (9%)

Query: 319  GAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPP 378
            G  GG     NE+G V   L      + S L          G                  
Sbjct: 1465 GQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFG 1524

Query: 379  SGPPPPPPPPPAPRPP-------------PAPAPA-PRAPPPPPKPGPPPPPPPRGGPAP 424
            +    P  P      P             PA +P  P   P  P   P  P      P+ 
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584

Query: 425  RPPPPMPSGSKVPRPPLGQKHSSSS 449
             P  P  S +     P    +S +S
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTS 1609

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 376 HPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPP 408
           +  +       PPP+  PP +  P P  PPP P
Sbjct: 105 NVVAANATVSMPPPSSSPPSSVMPPPVMPPPSP 137

>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Length = 441

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 25/128 (19%), Positives = 35/128 (27%), Gaps = 12/128 (9%)

Query: 340 PPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAP 399
               R      G+ P +P   R +PL      +L  +   G P         +    PAP
Sbjct: 176 DITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKY---GGPAFDEEVVVGQWTIDPAP 232

Query: 400 APRAPPP---------PPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSV 450
           A                   GP   P        R    +  G       +GQ      +
Sbjct: 233 AAIRLDTGLKTVGMRYVDYNGPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELL 292

Query: 451 GAGAEGDA 458
           GA  + DA
Sbjct: 293 GAVGDVDA 300

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score = 45.0 bits (105), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 18/63 (28%), Gaps = 1/63 (1%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPA-PRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 435
            P+   P        RP     P       PPP      PPPP   P  R   P    + 
Sbjct: 2   APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNA 61

Query: 436 VPR 438
            P 
Sbjct: 62  SPD 64

>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A Length = 144

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 10/55 (18%), Positives = 10/55 (18%)

Query: 378 PSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPS 432
           P G      P     P    A   R P       P               P   S
Sbjct: 2   PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS 56

>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A Length = 144

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 10/62 (16%), Positives = 13/62 (20%)

Query: 400 APRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSSVGAGAEGDAN 459
            P        P     P  +     R P    +            H        A   A+
Sbjct: 1   GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 60

Query: 460 AP 461
           AP
Sbjct: 61  AP 62

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 9/53 (16%), Positives = 11/53 (20%), Gaps = 1/53 (1%)

Query: 383 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSK 435
                      P   A     PP      PPP      G          +G +
Sbjct: 3   AKAQLSNGYNNPNVNASNMYGPPQNM-SLPPPQTQTIQGTDQPYQYSQCTGRR 54

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 21/129 (16%), Positives = 31/129 (24%), Gaps = 1/129 (0%)

Query: 375 PHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGS 434
                      P                A P       P P  P    APR    MP   
Sbjct: 102 VERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161

Query: 435 KVPRPPLGQKHSSSSVGAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFN 494
               PP        + G    G     +         + L+    + +   + +   + N
Sbjct: 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHIL-FLTNLPEETN 220

Query: 495 EEMIETLFG 503
           E M+  LF 
Sbjct: 221 ELMLSMLFN 229

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 15/43 (34%), Positives = 16/43 (37%)

Query: 383 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPR 425
             P  P AP P P        PPPPP P    PPP       +
Sbjct: 93  VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQ 135

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 13/35 (37%), Positives = 14/35 (40%)

Query: 381 PPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPP 415
             P  P  P P P       P  PPP P+   PPP
Sbjct: 93  VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPP 127

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Length = 391

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 26/131 (19%), Positives = 33/131 (25%), Gaps = 13/131 (9%)

Query: 341 PPGRVGSTLQGMP------PLKPPPGRAEPLPHEPPASLRPHPPSGPPPPP-----PPPP 389
             GRV   L  +P       + P  G      HE    +  H      P P     P PP
Sbjct: 125 LIGRVLGGLLDLPVVLHRWGVDPTAGPFSDRAHELLDPVCRHHGLTGLPTPELILDPCPP 184

Query: 390 APRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRPPLGQKHSSSS 449
           + +   AP  AP    P    G  P               +  G  V           + 
Sbjct: 185 SLQASDAPQGAPVQYVPYNGSGAFPAWGAA--RTSARRVCICMGRMVLNATGPAPLLRAV 242

Query: 450 VGAGAEGDANA 460
             A       A
Sbjct: 243 AAATELPGVEA 253

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... Length = 753

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 14/78 (17%), Positives = 23/78 (29%)

Query: 377 PPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKV 436
           P     P      A     + AP   +  P  +P PP   P   G    P       + +
Sbjct: 9   PHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKLNSL 68

Query: 437 PRPPLGQKHSSSSVGAGA 454
                G ++ + +   G 
Sbjct: 69  EDVRKGSENYALTTNQGV 86

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 17/86 (19%), Positives = 22/86 (25%), Gaps = 8/86 (9%)

Query: 354 PLKPPPGR--AEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKP- 410
           P      R   EP  +   A     P S  P  P      R P A        P   +P 
Sbjct: 7   PKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFA-----PAAAEPK 61

Query: 411 GPPPPPPPRGGPAPRPPPPMPSGSKV 436
                       +P+   P+  G   
Sbjct: 62  LFGGFNSSDTVTSPQRAGPLAGGVTT 87

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Length = 367

 Score = 42.3 bits (98), Expect = 5e-04
 Identities = 12/81 (14%), Positives = 15/81 (18%)

Query: 336 PPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPP 395
                P G    +L               L      S +P+        PPP        
Sbjct: 11  SSGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAA 70

Query: 396 APAPAPRAPPPPPKPGPPPPP 416
                      P    P P  
Sbjct: 71  FRDAKGLHGHQPWVATPLPGQ 91

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Length = 677

 Score = 42.6 bits (101), Expect = 6e-04
 Identities = 11/74 (14%), Positives = 14/74 (18%), Gaps = 1/74 (1%)

Query: 361 RAEPLPHEPPASLRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRG 420
            +  L                      P         A    AP     P   P  P + 
Sbjct: 7   HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGS-APSFNVDPLEQPAEPSKL 65

Query: 421 GPAPRPPPPMPSGS 434
               R  P M +  
Sbjct: 66  AKKLRAEPDMDTSF 79

>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope protein, HER simplex virus, disulfide bond, HOST cell MEMB HOST endosome; HET: NAG XYL; 3.00A {Human herpesvirus 2} Length = 204

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 10/57 (17%), Positives = 14/57 (24%), Gaps = 1/57 (1%)

Query: 383 PPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMPSGSKVPRP 439
             P    +   PP  +    +    P     PP        PR   P     +  R 
Sbjct: 146 LRPANTTSTWEPPVSSDDEASSQSKPLAT-QPPVLALSNAPPRRVSPTRGRRRHTRL 201

>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens} Length = 147

 Score = 39.6 bits (92), Expect = 9e-04
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 379 SGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPP 428
           S  PPPPP PP  +        PR+    P        P RG   P P P
Sbjct: 2   SSEPPPPPQPPTHQASVGLLDTPRSRERSPS-------PLRGNVVPSPLP 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	921
d1v9da_	332	a.207.1.1 (A:) Diaphanous protein homolog 1, dia1	3e-85
d1ux5a_	411	a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces	2e-80
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	2e-05
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	1e-04
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	7e-04
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	8e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.001
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.002
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.003

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  274 bits (702), Expect = 3e-85
 Identities = 95/361 (26%), Positives = 148/361 (40%), Gaps = 43/361 (11%)

Query: 523 QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELK 580
           + ++++D K AQNLSI L +  +  +E+ + +LE NE  L   +IQ L+K  P  E+   
Sbjct: 2   KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKM 61

Query: 581 LRLFNGELSQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKE 640
           L     E   L  +E+F   +  +P    RL A+LF     E+V   K     +  AC+E
Sbjct: 62  LSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEE 121

Query: 641 LRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQE 700
           LR S  F  LLE  L  GN MN G+   GA  F +  L KL D K  D K TLLHF+ + 
Sbjct: 122 LRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL 181

Query: 701 IIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVK 760
                                                           V     EL +V+
Sbjct: 182 CENDHP-----------------------------------------EVLKFPDELAHVE 200

Query: 761 KAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLL 820
           KA+ + A++L  ++ ++   +      +        E   F E + SFV++A+     L 
Sbjct: 201 KASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLR 260

Query: 821 EEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKK 880
                + +L K  GDYF  +  K      F  + +F  M  +A K+ +   +   K  + 
Sbjct: 261 MMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRA 320

Query: 881 E 881
           +
Sbjct: 321 K 321

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  264 bits (675), Expect = 2e-80
 Identities = 73/444 (16%), Positives = 133/444 (29%), Gaps = 85/444 (19%)

Query: 461 PKTKLKPFFWDKVLANPDNSMVWHQIKSGSF------QFNEEMIETLFGYSEKSKNEKKK 514
           P  KLK   W+K+    DNS +W   K+  F      +     +E  F   E      K+
Sbjct: 5   PHKKLKQLHWEKL-DCTDNS-IWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR 62

Query: 515 GSSLDTGPQYIQIIDQKKAQNLSIMLRAL-NVTLEEVCDALLEGNE-------------- 559
                   Q I  + +  +Q   I L    ++++ ++   +L  +               
Sbjct: 63  KED----LQKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSK 118

Query: 560 --LPAELIQTLLKMAPTAEEELKLRLF------NGELSQLGPAERFLKALV--DIPFSFK 609
             +    +      AP + +   +R          + + L  A++    L+     +   
Sbjct: 119 SEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGS 178

Query: 610 RLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGG 669
           R+ AL  + + + E +        ++ A   L+ S     +   +L  GN MND      
Sbjct: 179 RMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT--SKQ 236

Query: 670 AQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLE 729
           AQ FKL TL +L+ +K      T L++V + +                            
Sbjct: 237 AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRL-------------------NYPSFN- 276

Query: 730 ETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLN 789
                                   SELE V     +  + L         +++     + 
Sbjct: 277 ---------------------DFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVE 315

Query: 790 T----DMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG-KD 844
                D                 +  A      L +E K  +   +S    +  ++G K 
Sbjct: 316 IGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKF 375

Query: 845 EGLRLFTIVRDFFIMLDKACKQVK 868
             +  F    DF     KA  Q  
Sbjct: 376 AKISFFKKFADFINEYKKAQAQNL 399

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	921
d1ux5a_	411	Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	100.0
d1v9da_	332	Diaphanous protein homolog 1, dia1 {Mouse (Mus mus	100.0

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=495.07  Aligned_cols=367  Identities=19%  Similarity=0.250  Sum_probs=313.6

Q ss_pred             CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC------CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             999777675431110258888853212356854------56567898531142222222246999999996322254588
Q 002439          459 NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF------QFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKK  532 (921)
Q Consensus       459 ~~Pk~klK~l~W~kI~~~~~~~TIW~~i~~~~~------~~d~e~lE~lF~~~~~~~~~~kk~~~~~~~~k~i~iLD~kr  532 (921)
                      .+|+.+||++||++|+.  .++|||+.+++..+      .++.+.+|++|+.+.......+    ..+..+.++|||+||
T Consensus         3 PkP~~klK~l~W~ki~~--~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~~----~~~~~~~~~lLd~kr   76 (411)
T d1ux5a_           3 PRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASK----RKEDLQKITFLSRDI   76 (411)
T ss_dssp             CCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHH----HHHTTTSBCCSCHHH
T ss_pred             CCCCCCCCCCCCEECCC--CCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCCCCCCHHH
T ss_conf             98999998977615999--898820020441003678866309999998644777777666----666666200176789


Q ss_pred             HHHHHHHHHHC-CCCHHHHHHHHHCCCC--CCHHHH--------------HHHHHHCCCHHHHHHHHHHC------CCCC
Q ss_conf             76699878622-8898999996430898--869999--------------99993099979999996510------8777
Q 002439          533 AQNLSIMLRAL-NVTLEEVCDALLEGNE--LPAELI--------------QTLLKMAPTAEEELKLRLFN------GELS  589 (921)
Q Consensus       533 aqNi~I~L~~l-k~s~eei~~aI~~~~~--L~~e~l--------------~~Ll~~~Pt~eE~~~l~~~~------~d~~  589 (921)
                      +||++|+|++| ++++++|+++|+++|.  |+.+.+              +.|.+++||.+|+..++.|.      ||.+
T Consensus        77 ~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d~~  156 (411)
T d1ux5a_          77 SQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPN  156 (411)
T ss_dssp             HHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCST
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHH
T ss_conf             99998999870699999999999836854248789999983021013479999981799378999999985144547845


Q ss_pred             CCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             78937999999807--7533657679999987999999999999999999999771099999999999715445689888
Q 002439          590 QLGPAERFLKALVD--IPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFR  667 (921)
Q Consensus       590 ~L~~aEqFl~~l~~--Ip~~~~RL~~llf~~~f~e~~~~i~~~l~~l~~A~~el~~S~~l~~lL~~VL~~GN~lN~gt~r  667 (921)
                      .|+.+|||++.|+.  |+++..||+||+|+.+|.+.+.++.+.+..+..||++|++|+.|+.+|++||++|||||+|+  
T Consensus       157 ~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~--  234 (411)
T d1ux5a_         157 DLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS--  234 (411)
T ss_dssp             TBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGG--
T ss_pred             HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC--
T ss_conf             438799999999862334499999999999999999999999999999999999957679999999999860625899--


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             77014303220121243358998015799999999844256886421013466666113577520584015899842123
Q 002439          668 GGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQ  747 (921)
Q Consensus       668 g~A~GFkL~sL~KL~d~Ks~d~k~tLLh~iv~~i~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~k~~~~~~~~~~lgl~  747 (921)
                      |+|+||+|++|.||.++|++|+++|||||||+.+.++.                   ++                     
T Consensus       235 ~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~-------------------p~---------------------  274 (411)
T d1ux5a_         235 KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNY-------------------PS---------------------  274 (411)
T ss_dssp             GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHC-------------------GG---------------------
T ss_pred             CCCCEEEHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHC-------------------CH---------------------
T ss_conf             87123523898876521179998018999999999869-------------------07---------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4421256679999864210345769999997999998998743200----158897224469999999899999999999
Q 002439          748 AVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMK----NLGENSGFHETLKSFVQNAEGDIMWLLEEE  823 (921)
Q Consensus       748 ~v~~l~~eL~~v~kAa~id~d~L~~~v~kL~~~l~k~~~~l~~~~k----~~~~~~~F~~~l~~Fl~~Ae~ev~~L~e~~  823 (921)
                       +..|.+||..|.+|++++++.|..++.+|..++.++++.++....    ....++.|..+|..|+..++.++..+...+
T Consensus       275 -l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~  353 (411)
T d1ux5a_         275 -FNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEV  353 (411)
T ss_dssp             -GGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -5332877888998861899999999999999999999999862025400025111699999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999972342346645-45200020459999999999999997652254
Q 002439          824 KRIMSLVKSTGDYFHGNAG-KDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS  874 (921)
Q Consensus       824 k~i~~~~k~l~~YFggd~~-k~e~~~fF~iv~~Fl~~l~ka~kEv~~~~kr~  874 (921)
                      +++.+.|++++.|||+++. +..+++||++|.+|+..|++|++|+.+.++++
T Consensus       354 ~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~~~e~e  405 (411)
T d1ux5a_         354 KLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEE  405 (411)
T ss_dssp             HHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999998389988878999999999999999999999999999999

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=473.54  Aligned_cols=314  Identities=30%  Similarity=0.411  Sum_probs=292.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             632225458876699878622889899999643089--886999999993099979999996510877778937999999
Q 002439          523 QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKA  600 (921)
Q Consensus       523 k~i~iLD~kraqNi~I~L~~lk~s~eei~~aI~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqFl~~  600 (921)
                      +.|+|||+||+|||+|+|++|++++++|+++|+++|  .|+.|.|+.|++++||.||+..|++|.||.+.|+++|+|++.
T Consensus         2 k~i~vLd~kr~~ni~I~L~~~k~~~~~i~~ai~~~D~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~   81 (332)
T d1v9da_           2 KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVV   81 (332)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHHHHH
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCHHHHHHHH
T ss_conf             53685667889889999800796999999999957712299999999988595999999998712795426859999999


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             80775336576799999879999999999999999999997710999999999997154456898887701430322012
Q 002439          601 LVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLK  680 (921)
Q Consensus       601 l~~Ip~~~~RL~~llf~~~f~e~~~~i~~~l~~l~~A~~el~~S~~l~~lL~~VL~~GN~lN~gt~rg~A~GFkL~sL~K  680 (921)
                      |++||++..||++|+|+.+|++.+.++.+.+.++..||++|++|..|+.+|++||++|||||+|+.||+|.||+|++|.|
T Consensus        82 l~~ip~~~~Rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL~~GN~mN~g~~~g~A~GFkL~sL~k  161 (332)
T d1v9da_          82 MGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK  161 (332)
T ss_dssp             HHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CCHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHHHHH
T ss_conf             86624489999999999988999999999999999999999828259999999998600632434556555527899986


Q ss_pred             CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12433589980157999999998442568864210134666661135775205840158998421234421256679999
Q 002439          681 LSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVK  760 (921)
Q Consensus       681 L~d~Ks~d~k~tLLh~iv~~i~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~k~~~~~~~~~~lgl~~v~~l~~eL~~v~  760 (921)
                      |.|+|++|+++||||||++.+.++                   .++                      +..|.+||.+|.
T Consensus       162 L~d~Ks~d~~~tLL~~iv~~~~~~-------------------~p~----------------------l~~~~~eL~~v~  200 (332)
T d1v9da_         162 LRDTKSADQKMTLLHFLAELCEND-------------------HPE----------------------VLKFPDELAHVE  200 (332)
T ss_dssp             HHHSBCSSTTSBHHHHHHHHHHHS-------------------CCT----------------------TSSGGGGCTTHH
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHH-------------------CCH----------------------HCCCHHHHHHHH
T ss_conf             731327898731799999999984-------------------813----------------------136556665088


Q ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             86421034576999999799999899874320015889722446999999989999999999999999999723423466
Q 002439          761 KAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGN  840 (921)
Q Consensus       761 kAa~id~d~L~~~v~kL~~~l~k~~~~l~~~~k~~~~~~~F~~~l~~Fl~~Ae~ev~~L~e~~k~i~~~~k~l~~YFggd  840 (921)
                      .|++++++.|..++..|..++.+++..++......+.++.|...|..|+..++.++..|...++++...|++++.|||++
T Consensus       201 ~ask~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd  280 (332)
T d1v9da_         201 KASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFD  280 (332)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88608899999999999999999999998460344400547999999999999999999999999999999999994879


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4545200020459999999999999997652254465
Q 002439          841 AGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKS  877 (921)
Q Consensus       841 ~~k~e~~~fF~iv~~Fl~~l~ka~kEv~~~~kr~~k~  877 (921)
                      +.+..+.+||++|.+|+..|++|++|+.+.++++++.
T Consensus       281 ~~~~~~~efF~~~~~F~~~~~~a~~e~~~~~~~~~~~  317 (332)
T d1v9da_         281 PKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKM  317 (332)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7879999999999999999999999999999999999