Citrus Sinensis ID: 002453

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSFNLKYAIFFYKKYKY

cccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccc

ccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccc

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKrfssgppqLLTQICLALSALILRAVEHGKPIEKLFYSLQnlqsqdngNMAVLEMLTVLpeevidsqasdcnissaHRSQYGQELLSHTPMVVEFLMQQsdkrfdggvpvqlhdRNRKILRCLLSWVRAGCfteisqgslaahplLNFVFNSLQVQSSFDVAIEVLVELVgrheglpqallcRVPFLKELlllpaltdgdekVIGGLACLMSEIGQAAPSLIVEASPEALALADALLScvafpsedweiADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQvdessfnddgmvdlpdGLVQFRMNLVELLVDICQLLRSATFIQKVFfgswgsanvpipwkeVETKLFALNVVSEVVlqegqafdfSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDAsalidepsnLEILMWIGEALekrhlpledeeEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLidgdnnhslihnpaTYTQILSSATRGLYRmgtvfshlpvplptnpagddpIFALLRVFWPMLEKLFRSehmengnlSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTnfvsfqnhecyIRTASVVIEefghkdeygplfVTTFERFSQAASVRALNssyicdqepDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGyttsipegsfNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSFNLKYAIFFYKKYKY

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFlkellllpalTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSFNLkyaiffykkyky

*****QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID***************YGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSFNLKYAIFFYKKY**

***DLQIKVAQAVHVLNHD******VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS*****KHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDG**********ATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLL********GSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSFNLKYAIFFYKKYKY

**MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSFNLKYAIFFYKKYKY

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		920	2.2.26 [Sep-21-2011]
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	no	0.869	0.866	0.228	1e-32
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	no	0.827	0.824	0.231	1e-32
Q9USZ2		955	Uncharacterized protein C	yes	no	0.746	0.719	0.248	5e-23
A7YWD2		963	Importin-13 OS=Bos taurus	no	no	0.763	0.728	0.213	5e-19
Q8K0C1		963	Importin-13 OS=Mus muscul	no	no	0.763	0.728	0.212	3e-18
O94829		963	Importin-13 OS=Homo sapie	no	no	0.763	0.728	0.212	3e-18
Q5R974		963	Importin-13 OS=Pongo abel	no	no	0.758	0.724	0.211	3e-18
Q9JM04		963	Importin-13 OS=Rattus nor	no	no	0.894	0.854	0.203	5e-17
Q99189		972	mRNA transport regulator	yes	no	0.552	0.522	0.223	6e-16
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	no	0.757	0.727	0.217	7e-14

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function desciption

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 209/914 (22%), Positives = 383/914 (41%), Gaps = 114/914 (12%)

Query: 9   VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
           V QAV  L HD +   +  A+ WL + Q++  AWEI+  +L   RQ    D E  +FAAQ
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQI-RQ----DVESCYFAAQ 65

Query: 69  ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
            +K KIQ   Y L + +  +L ++LL   +      P ++TQ+ LA++ L L+       
Sbjct: 66  TMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGC 125

Query: 129 IEKLFYSLQNLQSQDNGNMA-VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187
           ++ L     N    D  ++  +LE+LTVLPEEV    +    I +  R++  ++L  ++ 
Sbjct: 126 VQTLVEKYSN----DVTSLPFLLEILTVLPEEV---HSRSLRIGANRRTEIIEDLAFYSS 178

Query: 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVF 247
            VV  LM   +K    G   ++     K+ RCL SW   G    +    +A + LL  +F
Sbjct: 179 TVVSLLMTCVEK---AGTDEKM---LMKVFRCLGSWFNLGV---LDSNFMANNKLLALLF 229

Query: 248 NSLQV--------QSSFDVAIEVLVELVGRHEGLPQAL-LCRVPFLKELLLLPALTDGDE 298
             LQ         +++ D     L  +      LP A+ L +     E     A+   D 
Sbjct: 230 EVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDL 289

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALA---LADALLSCVAFPSEDWEIADSTLQFWS 355
             +     + +E+ +     IV    + L      + LL C   P   +E+ + +  FW 
Sbjct: 290 DKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQ--YEVVEISFNFWY 347

Query: 356 TLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQ 415
            L  ++         N + +  +F +    LL AL    Q++    + +G+ +  D   +
Sbjct: 348 RLGEHL------YKTNDEVIHSIFKAYIQRLLHALARHCQLEP---DHEGVPEETDDFGE 398

Query: 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEG 475
           FRM + +L+ D+  L+ S     ++ + +    N   PW+  E  LF +  +++ V  E 
Sbjct: 399 FRMRVSDLVKDLIFLIGSMECFAQL-YSTLKEGNP--PWEVTEAVLFIMAAIAKSVDPEN 455

Query: 476 QAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA-DVIGSYSKWISAFQTNARPLLLFL 534
                 V+  +V          L   +H   R  + +++G  S+ +        P+L +L
Sbjct: 456 NPTLVEVLEGVV---------HLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYL 506

Query: 535 AAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGA 594
             G+ E   ++A A A+  IC      + +  N   L+ I  +L+   L  E    ++  
Sbjct: 507 MKGLCEKPLASAAAKAIHNICSVCRDHMAQHFN--GLLEIAHSLDSFMLSPEAAVGLLKG 564

Query: 595 ISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654
            +L+L  +   ++    L+ L S    A+ KL+  + ++ +  +P  +          L 
Sbjct: 565 TALVLARLPLDKI-TECLSELCSVQVMALKKLLSQEPSNGISSDPTVF----------LD 613

Query: 655 RMGTVFSHLPVPLPTNPAGDD----PIFALLRVFWPMLEKLFRSEHMENGNLSTAACRAL 710
           R+  +F H      TNP  ++    P   +++  WP+L +   ++H  +  +    CR L
Sbjct: 614 RLAVIFRH------TNPIVENGQTHPCQKVIQEIWPVLSETL-NKHRADNRIVERCCRCL 666

Query: 711 SLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHK--------DEY 762
             A++  G+    LL Q L     N      H C++   S++++E+G +        D  
Sbjct: 667 RFAVRCVGKGSAALL-QPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDML 725

Query: 763 GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE 822
             L + TF+   Q   ++           PD V+     A+ F++ S   +L +    + 
Sbjct: 726 QALCIPTFQLLEQQNGLQ---------NHPDTVDDLFRLATRFIQRSPVTLLRSQ---VV 773

Query: 823 VSFQKAAICCTAM-HRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSF---NAMAIQVI 878
           +   + AI  T + HR A  + M +L   +   +A       +  E  F     +  QV+
Sbjct: 774 IPILQWAIASTTLDHRDANSSVMRFLRDLIHTGVA-------NDHEEDFELRKELIGQVM 826

Query: 879 SHSGEGLVSNVVYA 892
           S  G+ LVS +++ 
Sbjct: 827 SQLGQQLVSQLLHT 840

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Mus musculus (taxid: 10090)

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		920
359488588		1015	PREDICTED: transportin-3-like [Vitis vin	0.979	0.887	0.809	0.0
255543441		1020	Transportin-3, putative [Ricinus communi	0.977	0.881	0.801	0.0
449501328		1029	PREDICTED: transportin-3-like [Cucumis s	0.977	0.873	0.772	0.0
224131372		1008	predicted protein [Populus trichocarpa]	0.964	0.879	0.779	0.0
356561051		1011	PREDICTED: transportin-3-like [Glycine m	0.977	0.889	0.753	0.0
449455816		1031	PREDICTED: LOW QUALITY PROTEIN: transpor	0.975	0.870	0.756	0.0
18391456		1005	exportin 1-like protein domain-containin	0.966	0.884	0.662	0.0
15215746		1005	At1g12930/F13K23_14 [Arabidopsis thalian	0.966	0.884	0.661	0.0
297849682		1007	hypothetical protein ARALYDRAFT_471447 [	0.966	0.882	0.665	0.0
8698739		974	Contains similarity to transportin-SR fr	0.932	0.880	0.637	0.0

>gi\|359488588\|ref\|XP_002276597.2\| PREDICTED: transportin-3-like [Vitis vinifera] gi\|296082227\|emb\|CBI21232.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1469 bits (3802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 735/908 (80%), Positives = 809/908 (89%), Gaps = 7/908 (0%)

Query: 3   MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQ----SFLT 58
           M+LQIKVAQAVHVLNHD++SCNRVAANQWLVQFQQTD AW++ATSILTSD      SFL+
Sbjct: 1   MELQIKVAQAVHVLNHDSQSCNRVAANQWLVQFQQTDLAWDVATSILTSDHHRHHHSFLS 60

Query: 59  DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSAL 118
           DFEVEFFAAQILKRKIQNEGYYLQ  AKDALLNALL+AAKRFSSGPPQLLTQICLALSAL
Sbjct: 61  DFEVEFFAAQILKRKIQNEGYYLQLGAKDALLNALLLAAKRFSSGPPQLLTQICLALSAL 120

Query: 119 ILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQY 178
           I+R+ EH KPIE+LFYSLQNLQSQD+ N+AVLEMLTVLPEE++++Q  DCNISS  R QY
Sbjct: 121 IIRSTEHRKPIEQLFYSLQNLQSQDDSNIAVLEMLTVLPEEIVENQNIDCNISSDRRCQY 180

Query: 179 GQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238
           GQELLSHT  V+EFL+QQS+K FDGG+  QLH+RNRKILRCLLSWVRAGCF EI  G L 
Sbjct: 181 GQELLSHTTRVLEFLLQQSEKSFDGGI--QLHERNRKILRCLLSWVRAGCFAEIPPGLLP 238

Query: 239 AHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDE 298
            HPLLNFV+NSLQV S+FD+AIEVL+ELVGRHEGLPQ LLCR+ FLKE+LLLPAL +GDE
Sbjct: 239 GHPLLNFVYNSLQVSSTFDLAIEVLIELVGRHEGLPQVLLCRIQFLKEVLLLPALNNGDE 298

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358
           KVI GLACLMSEIGQAAPSLIVEAS EA  LADALLSCVAFPSEDWEIAD+TLQFWS+LA
Sbjct: 299 KVISGLACLMSEIGQAAPSLIVEASAEAHLLADALLSCVAFPSEDWEIADTTLQFWSSLA 358

Query: 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD-GMVDLPDGLVQFR 417
           SYILGLD+   KNKK VEDMF  VFSALLDA LLRAQVD+S+FND+ G +DLPDGLV FR
Sbjct: 359 SYILGLDSDSGKNKKDVEDMFSPVFSALLDAFLLRAQVDDSTFNDESGTLDLPDGLVHFR 418

Query: 418 MNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA 477
           MNLVELLVDICQLL+S TFIQK+FFG W S N+PIPW++VETK+FALNVV+EVVLQEGQ 
Sbjct: 419 MNLVELLVDICQLLKSTTFIQKLFFGGWVSINLPIPWRDVETKMFALNVVAEVVLQEGQT 478

Query: 478 FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAG 537
           FDFSVIMQL+ +LS+   ++LKGFM IVYRSLADV+GSYSK IS+F+TNARPLLLFLA G
Sbjct: 479 FDFSVIMQLLTILSSMAPDKLKGFMRIVYRSLADVVGSYSKLISSFRTNARPLLLFLATG 538

Query: 538 ISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597
           ISE +SS+ACASALRK CEDASA+I EPSNLEILMWIGE LEKRHLPLEDEEEV+ AI+L
Sbjct: 539 ISEPLSSSACASALRKFCEDASAVICEPSNLEILMWIGEGLEKRHLPLEDEEEVISAITL 598

Query: 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMG 657
           IL SV NKELKNNLLARLLSSSYEAIGKLI  ++ HSL  NPA YTQIL+SA RGLYRMG
Sbjct: 599 ILSSVPNKELKNNLLARLLSSSYEAIGKLIGEEDKHSLKQNPAAYTQILTSAVRGLYRMG 658

Query: 658 TVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717
           TVFSHL  PL   P+ DDPI  LL VFWP+LEKLFRSEHMENG+LS AACRALS A+QSS
Sbjct: 659 TVFSHLAGPLSIGPSPDDPILVLLSVFWPVLEKLFRSEHMENGSLSAAACRALSQAVQSS 718

Query: 718 GQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAA 777
           GQHFVTLLP+VLDCLS NFV FQ+HECYIRTASVV+EEFGHK+EYGPLF++ FERF+ AA
Sbjct: 719 GQHFVTLLPEVLDCLSKNFVLFQSHECYIRTASVVLEEFGHKEEYGPLFISAFERFTYAA 778

Query: 778 SVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHR 837
           SV ALNSSYICDQEPDLVEAYTNF STFVR S KEVLAASG+LLEVSFQKAAICCTAMHR
Sbjct: 779 SVMALNSSYICDQEPDLVEAYTNFTSTFVRGSPKEVLAASGSLLEVSFQKAAICCTAMHR 838

Query: 838 GAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVS 897
           GAALAAMSY+SCFLE  L SLL   T IPEGSF+A+AIQVISHSGEGLVSNVVYALLGVS
Sbjct: 839 GAALAAMSYMSCFLEVGLISLLESMTCIPEGSFSAVAIQVISHSGEGLVSNVVYALLGVS 898

Query: 898 AMSRVNTS 905
           AMSRV+ S
Sbjct: 899 AMSRVHKS 906

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255543441\|ref\|XP_002512783.1\| Transportin-3, putative [Ricinus communis] gi\|223547794\|gb\|EEF49286.1\| Transportin-3, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449501328\|ref\|XP_004161339.1\| PREDICTED: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224131372\|ref\|XP_002321068.1\| predicted protein [Populus trichocarpa] gi\|222861841\|gb\|EEE99383.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356561051\|ref\|XP_003548799.1\| PREDICTED: transportin-3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449455816\|ref\|XP_004145646.1\| PREDICTED: LOW QUALITY PROTEIN: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|18391456\|ref\|NP_563920.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana] gi\|332190829\|gb\|AEE28950.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|15215746\|gb\|AAK91418.1\| At1g12930/F13K23_14 [Arabidopsis thaliana] gi\|27363440\|gb\|AAO11639.1\| At1g12930/F13K23_14 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297849682\|ref\|XP_002892722.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata] gi\|297338564\|gb\|EFH68981.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|8698739\|gb\|AAF78497.1\|AC012187_17 Contains similarity to transportin-SR from Homo sapiens gb\|AF145029. ESTs gb\|T46556, gb\|AI993189, gb\|T45501, gb\|AA394463 come from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		920
TAIR\|locus:2010381		1005	AT1G12930 "AT1G12930" [Arabido	0.966	0.884	0.656	1.3e-311
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.429	0.428	0.257	4.2e-34
TAIR\|locus:2154159		958	MOS14 "AT5G62600" [Arabidopsis	0.563	0.540	0.255	1.9e-33
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.856	0.823	0.231	1.3e-32
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.423	0.422	0.256	7.1e-31
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.429	0.427	0.257	9.4e-31
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.429	0.427	0.257	2e-30
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.429	0.427	0.257	5.2e-30
UNIPROTKB\|F1N8G5		955	IPO13 "Importin-13" [Gallus ga	0.765	0.737	0.229	6.7e-30
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.429	0.425	0.257	1.1e-29

TAIR\|locus:2010381 AT1G12930 "AT1G12930" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2989 (1057.2 bits), Expect = 1.3e-311, P = 1.3e-311
 Identities = 592/902 (65%), Positives = 724/902 (80%)

Query:     3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEV 62
             M+LQ KVA+A+HVLNHD ES NRVAANQWLVQFQ T AAW+++TS+LTS   S    F++
Sbjct:     1 MELQRKVAEAIHVLNHDPESSNRVAANQWLVQFQLTPAAWDVSTSLLTSPIVSL---FDL 57

Query:    63 EFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA 122
             +FFAAQIL+RKIQNE   LQS AKDALLNALL+AAKR+SSG PQLLTQICLALSAL+L +
Sbjct:    58 QFFAAQILRRKIQNEASNLQSTAKDALLNALLLAAKRYSSGVPQLLTQICLALSALLLHS 117

Query:   123 VEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQEL 182
               + KP +KL ++LQNLQ+ D+GN+ +LE+LTVLPEE+ D++        +H S   QEL
Sbjct:   118 DPYSKPFDKLMFALQNLQAHDDGNVVLLELLTVLPEEISDTR------HFSHHSDLRQEL 171

Query:   183 LSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242
             LSHT MV++FL+QQS+ +F    P+  HD NRKILRCLLSWVRAGCF+EI QG++ +HPL
Sbjct:   172 LSHTSMVLDFLLQQSENQFVS--PLYPHDNNRKILRCLLSWVRAGCFSEIPQGAVPSHPL 229

Query:   243 LNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFXXXXXXXXXXTDGDEKVIG 302
             LN+VFN+LQ  ++FD+AIEVLVELV RHE LPQ LL +V F           + D K+I 
Sbjct:   230 LNYVFNALQ-GTTFDLAIEVLVELVTRHEDLPQVLLYKVQFLRDTLLKPALINADLKIIS 288

Query:   303 GLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362
             GLACLMSEIGQAAP LIVEAS EAL L DA+LSCV FPSEDWEIADST+QFWST A+YIL
Sbjct:   289 GLACLMSEIGQAAPCLIVEASSEALILTDAILSCVTFPSEDWEIADSTVQFWSTFATYIL 348

Query:   363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM-VDLPDGLVQFRMNLV 421
              L  +   ++  V+D F  VFSAL+DAL+LRAQVDE + +D+   +DLPDGL+ FR NL+
Sbjct:   349 SLGGNRQNDRTRVKDTFLPVFSALVDALVLRAQVDEFTSSDESPGLDLPDGLLHFRNNLL 408

Query:   422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481
             ELLVDICQLL   TF+ K+FFG   S++V +P +E+E KLFAL  VSE++LQEG+AFDF+
Sbjct:   409 ELLVDICQLLHPTTFVSKLFFGGVPSSSVSMPLREIEAKLFALTAVSEIILQEGEAFDFA 468

Query:   482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA 541
             +IMQLV+  S   S ELKGF+ +VYRSLADV+GSYS+WIS F +NARPLLLFLA GISE 
Sbjct:   469 LIMQLVSAFSVRPSSELKGFISVVYRSLADVVGSYSRWISVFPSNARPLLLFLAGGISEP 528

Query:   542 VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601
             + S+ACASALRKICEDA A+I E SNL+ILMWIGE LE+  L LEDEEEV+ AI++ILGS
Sbjct:   529 ICSHACASALRKICEDAPAVIQETSNLDILMWIGECLEQWDLTLEDEEEVITAITVILGS 588

Query:   602 VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFS 661
             V+NKEL+N LL +LLSSSY  + KL+D D   S   +PATYT++LSS TRGLYR+GTVFS
Sbjct:   589 VANKELQNKLLTQLLSSSYGVLSKLVDEDAESSGRQSPATYTRMLSSVTRGLYRIGTVFS 648

Query:   662 HLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF 721
             HL   LP+ P  D PI +LL VFWP+LEKLFRSEHME+G+L+ AACRALS+A+QSSG+HF
Sbjct:   649 HLATSLPSVPVADGPILSLLTVFWPILEKLFRSEHMESGSLAAAACRALSVAVQSSGEHF 708

Query:   722 VTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRA 781
             + LLP VLDCLS NF+SFQ+ ECYIRTA V+ EEF HK+EYG LF+TTFERF+QA+S+  
Sbjct:   709 MLLLPSVLDCLSRNFLSFQSQECYIRTACVIAEEFCHKEEYGSLFITTFERFTQASSLMG 768

Query:   782 LNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAAL 841
             +NSSYICDQEPDLVEAY NFAS  +R+  KE+L  SG LLE+SF KAAICCTAMHRGAAL
Sbjct:   769 INSSYICDQEPDLVEAYVNFASALIRSCHKELLGTSGTLLEISFHKAAICCTAMHRGAAL 828

Query:   842 AAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSR 901
             AAMSYLS FLE  L+S++    SI +GSF+ +++QV+SH GEGL+SN+VYALLGV+AMSR
Sbjct:   829 AAMSYLSGFLEVSLSSMIETVNSISDGSFSVVSVQVVSHCGEGLLSNLVYALLGVAAMSR 888

Query:   902 VN 903
             V+
Sbjct:   889 VH 890

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

TAIR\|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8G5 IPO13 "Importin-13" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		920
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	3e-17
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	4e-04

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 15/161 (9%)

Query: 104 PPQLLTQICLALSALILRAVEHGKPIEKLFYSL-QNLQSQDNGNMAVLEMLTVLPEEVID 162
           P  +  ++ LAL+ L  +  E        F  L   L S  +G   +L +L VLPEE+ D
Sbjct: 1   PKFIRNKLALALAELAKQ--EWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLS 222
              +   ++   R++    L S  P ++E L+Q  +        +         L+CL S
Sbjct: 59  FSRTP--LTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSEL-----LSATLKCLGS 111

Query: 223 WVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVL 263
           W+       I  G +   PLLN +F  L      + A+E L
Sbjct: 112 WLS-----WIPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		920
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.97
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.94
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.87
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.82
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.78
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.65
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	99.59
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.57
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.21
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	99.06
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.83
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.61
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	98.52
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.57
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.3
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.21
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.19
KOG0212		675	consensus Uncharacterized conserved protein [Funct	95.85
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.67
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.24
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.24
KOG1242		569	consensus Protein containing adaptin N-terminal re	93.88
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	93.72
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.92
KOG1824		1233	consensus TATA-binding protein-interacting protein	92.92
PRK09687		280	putative lyase; Provisional	90.01
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	89.29
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	89.22
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	89.21
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	86.82
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	86.33
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	85.5
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	84.6
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	84.57
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	83.25
KOG1824		1233	consensus TATA-binding protein-interacting protein	82.58
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	82.08
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	81.46
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	80.04

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.2e-90  Score=757.12  Aligned_cols=861  Identities=18%  Similarity=0.260  Sum_probs=672.6

Q ss_pred             CCchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCC
Q 002453            1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY   80 (920)
Q Consensus         1 ~~~~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~   80 (920)
                      |+.+.+++|+++|..||++++++.+..+++||++.|+||+||+++++||+.++.     .++|||||.||+.||+++|++
T Consensus         1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~   75 (982)
T KOG2022|consen    1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE   75 (982)
T ss_pred             CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence            676779999999999999989999999999999999999999999999998764     588999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhhccCC----CchhHHHHHHHh
Q 002453           81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQ----DNGNMAVLEMLT  154 (920)
Q Consensus        81 l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~l~~~l~~~~~~----~~~~~~~L~iL~  154 (920)
                      +|+++...|+..++..+.+++.+|+.|.||+|.+++.+.+++.  .||+++.+++..++.+...    ...+..+|+.|+
T Consensus        76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls  155 (982)
T KOG2022|consen   76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS  155 (982)
T ss_pred             CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence            9999999999999999999999999999999999999999985  6999999999999863211    134678999999


Q ss_pred             hhhhhcccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCc
Q 002453          155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ  234 (920)
Q Consensus       155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~  234 (920)
                      .+|+|..+.   +  ++..+|..++.++......++.++..++....+...+..+-..+..+++|+.+|+++.   ..+.
T Consensus       156 ~~p~e~q~~---~--l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~  227 (982)
T KOG2022|consen  156 FMPAEFQHV---T--LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG  227 (982)
T ss_pred             cCcHhhhhc---c--chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence            999999654   2  6778899999999999999999998888765422110011146688999999999964   2232


Q ss_pred             chhcccchHHHHHHhcCC--CCcHHHHHHHH------------HHH---HhccC--ChhH---HHHhhhhh-hHhhhh-c
Q 002453          235 GSLAAHPLLNFVFNSLQV--QSSFDVAIEVL------------VEL---VGRHE--GLPQ---ALLCRVPF-LKELLL-L  290 (920)
Q Consensus       235 ~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l------------~ei---l~~~~--~~~~---~l~~~~~~-l~~~~~-~  290 (920)
                      -  ....++..++..+..  ....+++-+|+            .+.   +...+  .+..   .+++...+ +++.-. .
T Consensus       228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~  305 (982)
T KOG2022|consen  228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI  305 (982)
T ss_pred             c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            2  233455566655551  11122222222            111   11111  0111   22333222 221110 0


Q ss_pred             hhhcCCC--HhHHhhHHHHHHHHHHhhhHHHHhC------ChhHHHHHHHHHhhcCCCCCCcch----hhccHHHHHHHH
Q 002453          291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEI----ADSTLQFWSTLA  358 (920)
Q Consensus       291 ~~~~~~d--~d~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~ll~~~~~p~~d~~v----~~~~~~FW~~l~  358 (920)
                      ....+.|  +|....++++++..+|++.+.+.++      ++.+.++++.|+.|+++||. |++    +..++.|||+|+
T Consensus       306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~  384 (982)
T KOG2022|consen  306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ  384 (982)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence            2334555  7788899999999999999988764      22457899999999999994 554    558899999999


Q ss_pred             HHhhccchhhhhhhhhhhhhhH-HHHHHHHHHHHHhcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchH--
Q 002453          359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT--  435 (920)
Q Consensus       359 e~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~k~~~p~~~~~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~--  435 (920)
                      |++..+..++.  + .....|+ |+|.+|++++++|+.+|.++....|..|+++.|+.||++++|+++++|.++|...  
T Consensus       385 dei~~~~~e~~--~-~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~  461 (982)
T KOG2022|consen  385 DEIMQTINETQ--Q-IKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLD  461 (982)
T ss_pred             HHHHHhhhccC--C-cchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            99976655432  1 2234454 9999999999999999998766679999999999999999999999999999642  


Q ss_pred             HHHHHHhhhhcCC-CCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 002453          436 FIQKVFFGSWGSA-NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIG  514 (920)
Q Consensus       436 ~l~~~~~~~~~~~-~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig  514 (920)
                      ++...++++..+. +.+.+|.+.|+|+|++.++++.+...++    +.+..++...++.+....  .+.+.. |++.+||
T Consensus       462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~--n~ql~~-Tss~~ig  534 (982)
T KOG2022|consen  462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAP--NPQLLS-TSSDLIG  534 (982)
T ss_pred             HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccC--ChhHHH-HHHHHHH
Confidence            4444455543332 3456799999999999999999875554    666666665554322100  011333 5589999


Q ss_pred             hhhHHHHhchhchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHhCCCChhhHHHHHH
Q 002453          515 SYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVG  593 (920)
Q Consensus       515 ~y~~~l~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~e  593 (920)
                      .|+.|+..||.+|.+.++.+++++++++....|..+++++|++|+.+|.  ++.+.++... +.+........++.+++.
T Consensus       535 s~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~--py~d~~~a~~~e~l~~~~~~~S~~~klm~  612 (982)
T KOG2022|consen  535 SLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD--PYADQFSAVCYEVLNKSNAKDSDRLKLMK  612 (982)
T ss_pred             HHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc--hHHHHHHHHHHHHhcccccCchHHHHHHH
Confidence            9999999999999999999999999999888888999999999999995  3777666654 454566778899999999


Q ss_pred             HHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCC---
Q 002453          594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN---  670 (920)
Q Consensus       594 ai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~---  670 (920)
                      +||++++.+.+++ +++|+.++++|++++++.++....+     +++..   +. .+-.+.+++++|.++..+.+..   
T Consensus       613 sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~-----~~e~~---l~-~~~~l~~iS~LftSL~~~~~~~d~d  682 (982)
T KOG2022|consen  613 SIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGID-----DQENH---LR-IAFQLNTISALFTSLINKKDIIDTD  682 (982)
T ss_pred             HHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCC-----CHHHH---HH-HHHHHHHHHHHHhccCCCCcccccc
Confidence            9999999998666 7899999999999999999776532     22221   11 2334667778888776543211   


Q ss_pred             CC-------CCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHHHHhhhhhcCc
Q 002453          671 PA-------GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQNH  742 (920)
Q Consensus       671 ~~-------~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~  742 (920)
                      .+       ...|++.++++++|+++.++. +|.++.+++|++|..++++++++++.+ .|++|.+..++.+ |... +.
T Consensus       683 ~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~~  759 (982)
T KOG2022|consen  683 QPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-CL  759 (982)
T ss_pred             chhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-hH
Confidence            00       113788899999999999998 899999999999999999999998887 8999999999987 7644 44


Q ss_pred             chHHHHHHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhH
Q 002453          743 ECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE  822 (920)
Q Consensus       743 ~~~L~l~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~  822 (920)
                      ..-+.+..+++..+..++.+.+.+...+..+.+.. +..+.+. .+.++||+.+.++++++.++++.|+.+.++...+-.
T Consensus       760 a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts  837 (982)
T KOG2022|consen  760 AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTS  837 (982)
T ss_pred             HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHH
Confidence            45577888888888777788888877777666665 5556553 479999999999999999999999999986434555


Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhccCCcccch
Q 002453          823 VSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRV  902 (920)
Q Consensus       823 ~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~~rs~l  902 (920)
                      .++.|++..++.+|+.+.|++++||+.|+...++            ++...+++++.+.|+.|+.++|+|+||.+|||.+
T Consensus       838 ~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~l  905 (982)
T KOG2022|consen  838 LILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTL  905 (982)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccchh
Confidence            5666999999999999999999999999887553            3368899999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q 002453          903 NTSFNLKYAIFFYKKY  918 (920)
Q Consensus       903 ~~~~e~l~~l~~~~~~  918 (920)
                      |.++|+|+++  +||+
T Consensus       906 d~~aDIL~al--~~k~  919 (982)
T KOG2022|consen  906 DALADILLAL--NAKF  919 (982)
T ss_pred             HHHHHHHHHH--HHhh
Confidence            9999999988  5654

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		920
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		4e-18
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-14
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		4e-09

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

Iteration: 1

Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 165/791 (20%), Positives = 324/791 (40%), Gaps = 89/791 (11%) Query: 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68 V +A+H L +D N+ A +WL+Q Q + AW + +L D+ E+++F A Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80 Query: 69 ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128 L KI + + ++L L RF+SG +LT++C+AL++L L + P Sbjct: 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140 Query: 129 -----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183 + +LF + + +A+LE+LTVLPEE S+ R+ E Sbjct: 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199 Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 + P++ + L Q S +K+L+C SWV+ E+ A L+ Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243 Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299 F +LQ FD ++E +V + + + LL +P +GD + Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDME 303 Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353 G+ + +G+ + VE LAL + ++ C P + + TL F Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTF 363 Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413 W TL IL + A+ + + ++ V+ L+D LL +AQ D + Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420 Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470 +R+++ + L+ + ++L A + ++ G S+ P W+ E L+ ++E Sbjct: 421 RIYRVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520 + + S+ + G + ++ R LAD IG+ S+W+ Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520 Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580 + +L + + S + S L+KIC + + P I+ + L K Sbjct: 521 ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMK 579 Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636 + ++ A+ +L ++ +E+ NL + L+S + + KL + N +++ Sbjct: 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638 Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693 H + + ++ + G LPV P G +P+ +L+ + +++K+ Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPV-----PQGPNPVVVVLQQVFQLIQKVL- 692 Query: 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVI 753 S+ + + + A C ++++ F ++PQ+ + L + + T +V Sbjct: 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLV- 751 Query: 754 EEFGHKDEYGP 764 F H+ + P Sbjct: 752 HIFAHEPAHFP 762

PyMOL of 2xwu

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		920
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-101
2x1g_F		971	Cadmus; transport protein, developmental protein,	2e-81
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	4e-55
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	1e-52
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-47
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	1e-24
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-14
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	8e-06

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  338 bits (867), Expect = e-101
 Identities = 176/923 (19%), Positives = 358/923 (38%), Gaps = 78/923 (8%)

Query: 1   MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDF 60
           +   ++  V +A+H L +D    N+  A +WL+Q Q +  AW  +  +L  D+       
Sbjct: 19  LDFTVE-NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDK-----VP 72

Query: 61  EVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL 120
           E+++F A  L  KI      + +   ++L   L     RF+SG   +LT++C+AL++L L
Sbjct: 73  EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLAL 132

Query: 121 RAVEHGKP-----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHR 175
             +    P     + +LF +  +        +A+LE+LTVLPEE   S+     +    +
Sbjct: 133 SMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR-----LPQYRK 187

Query: 176 SQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235
                 L      V   L Q   +      P       +K+L+C  SWV+     +    
Sbjct: 188 GLVRTSLAVECGAVFPLLEQLLQQ------PSSPSCVRQKVLKCFSSWVQLEVPLQDC-- 239

Query: 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGL-----PQALLCRVPFLKELLLL 290
                 L+   F +LQ    FD ++E +V  + + +          L+  V  L+E  L 
Sbjct: 240 ----EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQE-QLR 294

Query: 291 PALTDGDEKVIGGLACLMSEIGQAAPSLIV---EASPEALALADALLSCVAFPS---EDW 344
            A+ +GD +   G+  +   +G+     ++   E     LAL + ++ C   P     + 
Sbjct: 295 QAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNE 354

Query: 345 EIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD 404
             +  TL FW TL   IL  +   A+ +   + ++  V+  L+D LL +AQ         
Sbjct: 355 TTSSLTLTFWYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411

Query: 405 GMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFGSWGSANVPIPWKEVETKLF 462
              D  +    +R+++ + L+ + ++L +     +         S+  P  W+  E  L+
Sbjct: 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLY 471

Query: 463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522
               ++E +          V+  L+ ++       ++     +  ++   IG+ S+W++ 
Sbjct: 472 GFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQ-----LADTVMFTIGALSEWLAD 522

Query: 523 FQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRH 582
                  +L  +   +     S +  S L+KIC +    +  P    I+    + L K+ 
Sbjct: 523 HPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMKQI 581

Query: 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY 642
                   ++ A+  +L ++  +E+  NL   L+S   + + KL +   N S        
Sbjct: 582 HKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHI 640

Query: 643 TQILSSATRGLYRMGTVFSHLPVPLPTN--PAGDDPIFALLRVFWPMLEKLFRSEHMENG 700
             +LS+    L        H    L     P G +P+  +L+  + +++K+  S+ + + 
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL-SKWLNDA 699

Query: 701 NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKD 760
            +  A C     ++++    F  ++PQ+ + L   + +       +     ++  F H+ 
Sbjct: 700 QVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP-QASALDLTRQLVHIFAHEP 758

Query: 761 EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL 820
            + P     F   +                 PD+V+++    +  ++      L     +
Sbjct: 759 AHFPPIEALFLLVTSVTLT---LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDV 815

Query: 821 LEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISH 880
             V FQ A +           A+  + +  L  C                     +V+  
Sbjct: 816 KAV-FQCAVLALKFPEAPTVKASCGFFTELLPRC--------------GEVESVGKVVQE 860

Query: 881 SGEGLVSNVVYALLGVSAMSRVN 903
            G  L+  V+ A+ G ++ S ++
Sbjct: 861 DGRMLLIAVLEAIGGQASRSLMD 883

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		920
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-08
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	4e-06

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 5e-08
 Identities = 91/749 (12%), Positives = 192/749 (25%), Gaps = 66/749 (8%)

Query: 9   VAQAVHVLN--HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFA 66
           + Q + +L      ++  +    Q L Q  Q          +LT  +     D      +
Sbjct: 10  LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE---DEPTRSLS 66

Query: 67  AQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHG 126
             ILK  ++       +   D + +  L          P +   + + ++  I    E  
Sbjct: 67  GLILKNNVKAHFQNFPNGVTDFIKSECLNN---IGDSSPLIRATVGILITT-IASKGELQ 122

Query: 127 KPIEKLFYSLQNLQSQD-NGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185
              + L      L S+D N        L  + E+  +   SD         +    ++  
Sbjct: 123 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD------VLDRPLNIMI-- 174

Query: 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245
            P  ++F    S K                 +R              +Q  +        
Sbjct: 175 -PKFLQFFKHSSPK-----------------IRSHAVACVNQFIISRTQALMLHIDSFTE 216

Query: 246 VFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA 305
              +L      +V   V   LV   E     LL  +  + E  +L    D DE V     
Sbjct: 217 NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE-YMLQRTQDQDENVALEAC 275

Query: 306 CLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD 365
                + +      V        L   L++ + +   D  +    ++   T+      + 
Sbjct: 276 EFWLTLAEQPICKDV-LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334

Query: 366 ASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLV 425
               +++   +           D        D  S  +          V   +   ELL 
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLP 394

Query: 426 DICQLL---RSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFD--F 480
            I  LL              G      +     +         +   +     +      
Sbjct: 395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 454

Query: 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE 540
                L        S+    ++  +   L   I   +K +     +A   L   A     
Sbjct: 455 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA----- 509

Query: 541 AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600
                     L  I +       +  + + L+ + +A+      +         I +++ 
Sbjct: 510 ---CTELVPYLAYILDTLVFAFSKYQH-KNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 565

Query: 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYR----- 655
            +  K        + L    E +  +     +  L +    Y + ++   + L +     
Sbjct: 566 PLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN 625

Query: 656 ---------MGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAA 706
                               L     G       L     +L  +++    +   +  ++
Sbjct: 626 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 685

Query: 707 CRALSLAIQSSGQHFVTLLPQVLDCLSTN 735
              L    ++  QH    +   +  L TN
Sbjct: 686 FALLGDLTKACFQHVKPCIADFMPILGTN 714

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		920
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	100.0
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	100.0
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.74
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.38
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	99.21
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.04
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.98
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.88
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.2
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	87.74
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	84.16
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	81.52

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-32  Score=215.34  Aligned_cols=719  Identities=12%  Similarity=0.107  Sum_probs=411.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             518999999999960399948799999999996038--69999999964359888875246988999999999603667-
Q 002453            3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-   79 (920)
Q Consensus         3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~-   79 (920)
                      |+. +++.+++...+.++|++.|++|+++|++++++  ++.+..+.+++...+    .+.++|++|+..||+.+.++|. 
T Consensus         1 M~~-~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~~r~~A~i~lkn~i~~~~~~   75 (861)
T d2bpta1           1 MST-AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDSV   75 (861)
T ss_dssp             CCH-HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSHH
T ss_pred             CCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHCCCCH
T ss_conf             988-9999999998559899999999999999874471689999999997699----99899999999999985114502


Q ss_pred             -----------CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HC--CCCCHHHHHHHHHHHCCCCCCH
Q ss_conf             -----------789367999999999999970689869999999999999946-02--6786499999994102488851
Q 002453           80 -----------YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV--EHGKPIEKLFYSLQNLQSQDNG  145 (920)
Q Consensus        80 -----------~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~-~~--~W~~~i~~l~~~l~~~~~~~~~  145 (920)
                                 .++++.+..+|+.+++.+.   ..++.|+++++.+++.++.. ++  .||+.++.++..+.+.. +...
T Consensus        76 ~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~-~~~~  151 (861)
T d2bpta1          76 KTQQFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENV  151 (861)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-CHHH
T ss_conf             235677666732999999999999999883---998899999999999999976776763889999999856999-5899


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             48999998431210001365556899778999999997403599999999661003899976314648999999999997
Q 002453          146 NMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR  225 (920)
Q Consensus       146 ~~~~L~~L~~l~eE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~  225 (920)
                      ....+.++..+.|+....      ...         +......++..+.+.+....      .+..++..+++|+.+++.
T Consensus       152 ~~~al~~l~~i~e~~~~~------~~~---------~~~~~~~il~~i~~~~~~~~------~~~~v~~~a~~~l~~~~~  210 (861)
T d2bpta1         152 KRASLLALGYMCESADPQ------SQA---------LVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLI  210 (861)
T ss_dssp             HHHHHHHHHHHHHTSSTT------SST---------TGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHH------HHH---------HHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHH
T ss_conf             999999999999883477------888---------89889999999999873334------789999999999999999


Q ss_pred             CCCCCCCCCCHH---CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHCCCCHHHHH
Q ss_conf             045665671011---02014999997417999289999999999723579369998641323764001100279876890
Q 002453          226 AGCFTEISQGSL---AAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIG  302 (920)
Q Consensus       226 ~~~~~~i~~~~~---~~~~ll~~~~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~d~~~  302 (920)
                      +.     +....   ....+++.++..+                                           +.+|.+...
T Consensus       211 ~~-----~~~~~~~~~~~~~~~~l~~~~-------------------------------------------~~~~~~~~~  242 (861)
T d2bpta1         211 FI-----KNNMEREGERNYLMQVVCEAT-------------------------------------------QAEDIEVQA  242 (861)
T ss_dssp             GC-----HHHHTSHHHHHHHHHHHHHHH-------------------------------------------TCSCHHHHH
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHHHH-------------------------------------------CCCCHHHHH
T ss_conf             87-----676776665447777679885-------------------------------------------699899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCHHHHH---HHHHHHHH
Q ss_conf             5999999997863699981792389999999-8200788887302230199999999876015245544---43433351
Q 002453          303 GLACLMSEIGQAAPSLIVEASPEALALADAL-LSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK---NKKHVEDM  378 (920)
Q Consensus       303 ~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~l-l~~~~~p~~d~~v~~~~~~FW~~l~~~l~~~~~~~~~---~~~~~~~~  378 (920)
                      ..+..+..+.+.+...+..   .....+..+ .......  +.++....++||..+.+...+.......   ........
T Consensus       243 ~~~~~l~~i~~~~~~~~~~---~l~~~l~~l~~~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (861)
T d2bpta1         243 AAFGCLCKIMSKYYTFMKP---YMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF  317 (861)
T ss_dssp             HHHHHHHHHHHHHGGGCHH---HHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999998877899999---99989999999873275--499999999999999999988999998620367899999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             19899999999997405689988998888888519999999999999999860845899999854315999999803656
Q 002453          379 FFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVE  458 (920)
Q Consensus       379 ~~~~~~~ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~E  458 (920)
                      ..+.+..+++.+..-+....++.        .++....|.....++...+..++.. .+.......... ..+.+|...+
T Consensus       318 ~~~~l~~i~~~l~~~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~  387 (861)
T d2bpta1         318 ALSSIKDVVPNLLNLLTRQNEDP--------EDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQN-ITADNWRNRE  387 (861)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCC---------CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-TTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHHHHHCCHH-HHHHHCCHHHHH-HHHHHHHHHH
T ss_conf             99999999999999988730244--------4014778888999988877603314-665411113542-0017778888


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHCHHHHHHHHH
Q ss_conf             8999998422013557865554689999998316843655567899998899999943688885---6331499999999
Q 002453          459 TKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLA  535 (920)
Q Consensus       459 a~L~~l~~iae~i~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~wl~~---~p~~L~~vl~~l~  535 (920)
                      +++++++++++....+.....++.+++.+.....++...      +|.++ ++++|++++++..   .+.+++.+++.++
T Consensus       388 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~------vr~~a-~~~l~~l~~~~~~~~~~~~~~~~ll~~l~  460 (861)
T d2bpta1         388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ------VKETT-AWCIGRIADSVAESIDPQQHLPGVVQACL  460 (861)
T ss_dssp             HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHH------HHHHH-HHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf             899899998841026668887899999998873376205------66689-88999999981301004776204568998


Q ss_pred             HHCCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             81065-715799999999999993101699740899999----9999972799956399999999999716992578999
Q 002453          536 AGISE-AVSSNACASALRKICEDASALIDEPSNLEILMW----IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNN  610 (920)
Q Consensus       536 ~~l~~-~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~----~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~  610 (920)
                      ..+.+ +.+...++.++..++..+...... ...+.+..    +.............+...+++++.++...+..  ...
T Consensus       461 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~--~~~  537 (861)
T d2bpta1         461 IGLQDHPKVATNCSWTIINLVEQLAEATPS-PIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAE  537 (861)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHHHHSSSSSC-GGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHH
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_conf             602467089999999999999875230221-14688754788999987421234899999999899999986888--899


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99998889999999464037999777795246777776677777521001334556788988886089999969999999
Q 002453          611 LLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEK  690 (920)
Q Consensus       611 ~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~  690 (920)
                      ++..+.......+.+.+..........+.... ..+.  ......++.+++....       ...   +....+++.+..
T Consensus       538 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~--~~~~~~l~~~~~~~~~-------~~~---~~~~~l~~~l~~  604 (861)
T d2bpta1         538 TSASISTFVMDKLGQTMSVDENQLTLEDAQSL-QELQ--SNILTVLAAVIRKSPS-------SVE---PVADMLMGLFFR  604 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHH-HHHH--HHHHHHHHHHHHHCGG-------GTG---GGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHCCHH-------HHH---HHHHHHHHHHHH
T ss_conf             99999999999999999888654116677679-9999--9999999999861536-------579---999999999751


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             9973210542899999999999999652425763999999999855320675--31887899999980588887421699
Q 002453          691 LFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEFGHKDEYGPLFVT  768 (920)
Q Consensus       691 i~~~~~~~~~~i~e~~c~~~~~~~~~l~~~~~p~l~~i~~~l~~~f~~~~~~--~~~L~l~~~li~~f~~~~~~~~~~~~  768 (920)
                      .+.  -..+..+.+.++.++......+|..+.|+++.+++.+...+....+.  ...+.+.+.+....+.  ...+.+..
T Consensus       605 ~l~--~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~--~~~~~~~~  680 (861)
T d2bpta1         605 LLE--KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--DFRRYSDA  680 (861)
T ss_dssp             HHH--STTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--GGHHHHHH
T ss_pred             HCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_conf             001--58836588789999988887745789999999705999873799889999999999999997578--72711999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC----HH------
Q ss_conf             99997566889985156878878836999999999999652488872012404999999987513687----46------
Q 002453          769 TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH----RG------  838 (920)
Q Consensus       769 l~~~l~~~~~~~~l~~~~~~~~~pD~v~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e----~~------  838 (920)
                      ++..+     +..+..   ...++++....+..++.++.+.+..|.+    .++.++.....++...-    .+      
T Consensus       681 i~~~L-----~~~l~~---~~~~~~~k~~~~~~l~~i~~~~~~~~~~----~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  748 (861)
T d2bpta1         681 MMNVL-----AQMISN---PNARRELKPAVLSVFGDIASNIGADFIP----YLNDIMALCVAAQNTKPENGTLEALDYQI  748 (861)
T ss_dssp             HHHHH-----HHHHHC---TTCCTTHHHHHHHHHHHHHHHHGGGGHH----HHHHHHHHHHHHHTCCCSSSSHHHHHHHH
T ss_pred             HHHHH-----HHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             99999-----998578---8888999999999999999998798899----99999999999857677754189999999


Q ss_pred             -HHHHHHHHHHHHHHH
Q ss_conf             -899999999999964
Q 002453          839 -AALAAMSYLSCFLEE  853 (920)
Q Consensus       839 -~~~a~~~Fl~~li~~  853 (920)
                       ...+++..+..++..
T Consensus       749 ~l~~~~~~~~~~i~~~  764 (861)
T d2bpta1         749 KVLEAVLDAYVGIVAG  764 (861)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999998

PyMOL of d2bpta1

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure