Citrus Sinensis ID: 002455

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920
MKQPIGNASMTPLSYTETPFGKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDSRQETGRNHNSHKQVSDIWEDEYSESEASGVADLHRMKNGVKKSNTTRFYDTESENNSEYLYHPENNEDPTLSDCTSSPLPIGKKVVRSYSGKSLEENAGATTEDSDEYCREVQCIEMEGSSRFKNFESHALSNGENEGTLALTYEDGDVTGQEMISTPVNGDREERRIQNGFTYGALEQRLNNVQKTIESLVSPYPDAGESSLRSLAEDMSSSRSLSLARSRSCRAKLMAGSSSPSLEKGEQIESTPPNGFEKNFPGRPEGFQKKLFSYGTNTSSLSRNDSLSSLESASIKTSADEDITSIQTFVAGLNKMAKNQETGLQADNSEKNVKDVGLDPMHEALETPENWPVEFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRERETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPLTTPRRRSLGWKHSMASLL
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHccccccccccccccEEEEcccccEEEccccEEEcccHHHHHHHHHHHHHHccHHcccccccccccccEEEEEEEEEcccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccEEEEEEEccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHccccccHHHHHHcccccccccHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHcccHHHHHHHHccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccEEEccEEEcccccHHHHHHHHcHHHHHHHHccccEEEEEEccccccHHHHHcEccHHHHHHHHHHHHHcccEEEEEEEEEEEEEccEEEEccccccccEcEEEcccccEEEcccccEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHcEEEEEEEEEEEEEccccccccEEEEEEEEEEEccccccccccccccccccccHHHccHHHHHHHHHHHHHHcccccccHHHcHHHHHcHHHcccccEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcccccccccccccHHccccccccccHHHccccccccccEEcccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHcEEEEccccccccccccccccccccccccccccccccccccccccHHHHccHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccHcccccccHHHHHHHcccccccccHHHHcccccccccHHHccccccccccEEEcccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEHHEHEEEEcccccccEEEEEEHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccccccccccc
mkqpignasmtplsytetpfgkdphfhlpihlidrvfwgdcsttqvYEDGAKEIALSVVSGINSSIFaygqtssgktytmtgitectvADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLlstdntplrllddpekgvVVEKVTEEILKDWNHLKELLSICEAQRRIGETllnekssrSHQIIRLMIESSAReflgkensttlsASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLskgrnghinyrdskltrmlqpclggnartaiictlsparshvEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLEselrspapasstcDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVgcdqdsrqetgrnhnshkqvsdiwedeyseseasgvADLHRmkngvkksnttrfydtesennseylyhpennedptlsdctssplpigkkvvrsysgksleenagattedsdeyCREVQCIEmegssrfknfeshalsngenegtlaltyedgdvtgqemistpvngdreerriqngfTYGALEQRLNNVQKTIESlvspypdagesSLRSLAEDMSSSRSLSLARSRSCRAklmagssspslekgeqiestppngfeknfpgrpegfqKKLFsygtntsslsrndslsslesasiktsadedITSIQTFVAGLNKMAKNQetglqadnseknvkdvgldpmhealetpenwpvEFERQRRELFQLWQTCNVSLVHRTYFFLLfrgdpsdsiymgVELKRLSFLKESFsqgnmamqdgRVLSLASSERALRRERETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHlwsnskdmnrITESAAIIAKLIRFVEQGDalkgmfglsftplttprrrslgwkHSMASLL
mkqpignasmtplsYTETPFGKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLstdntplrllddpekgvVVEKVTEEILKDWNHLKELLSICEAQRRIGEtllnekssrshqIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALStgarlkegchinrsLLTLSTvirklskgrnghinyrdskltrmLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARleselrspapasstcdyvALLRKKDLQIQKMEREIreltkqrdlaqsrvEDLLRMVGCDqdsrqetgrnhnshkqvsdiwEDEYSESEAsgvadlhrmkngvkksnttrfydtesenNSEYLYHPENNEDPTLSDCTSSPLPIGKKVVrsysgksleenagattedsdeYCREVQCIEMEGSSRFKNFESHALSNGENEGTLALTYEDGDVTGQEMistpvngdreerRIQNGFTYGALEQRLNNVQKTIESLVSPYPDAGESSLRSLAEDMSSSRSLSLARSRSCRAKLmagssspslekgeqIESTPPNGFEKNFPGRPEGFQKKLFSYGTNTSSLSRNDSLSSLESAsiktsadediTSIQTFVAGLNKMAKNQEtglqadnseknVKDVGLDPMHEALETPENWPVEFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSqgnmamqdgrvlslasseralrRERETLSklmrrrlsadernklyqkwgiglnskrRRLQLANhlwsnskdmnrITESAAIIAKLIRFVEQGDALKGMFglsftplttprrrslgwkhsmasll
MKQPIGNASMTPLSYTETPFGKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPekgvvvekvteeILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDSRQETGRNHNSHKQVSDIWEDEYSESEASGVADLHRMKNGVKKSNTTRFYDTESENNSEYLYHPENNEDPTLSDCTSSPLPIGKKVVRSYSGKSLEENAGATTEDSDEYCREVQCIEMEGSSRFKNFESHALSNGENEGTLALTYEDGDVTGQEMISTPVNGDREERRIQNGFTYGALEQRLNNVQKTIESLVSPYPDAGESSLrslaedmsssrslslarsrscraKLMAGSSSPSLEKGEQIESTPPNGFEKNFPGRPEGFQKKLFSYGTNTsslsrndslsslesasiktsADEDITSIQTFVAGLNKMAKNQETGLQADNSEKNVKDVGLDPMHEALETPENWPVEFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVlslasseralrreretlsKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPLTTPRRRSLGWKHSMASLL
*******************FGKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLL********QIIRLMI*******************VNFVDL************GARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQ*******************CDYVALLRKKDL************************************************************************************************************************************************CREVQCI*******************************************************GFTYGALEQRL*************************************************************************************************************************TFVA***************************************WPVEFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLK**********************************************KLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPLT*****************
*****************************IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMI****************SASVNFVDLAGSERAS******ARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELAR*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFS*******************ALRRERETLS**M*******ER**LYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPL*********WKHSMASLL
********SMTPLSYTETPFGKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLE***********TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQD***************SDIWEDEYSESEASGVADLHRMKNGVKKSNTTRFYDTESENNSEYLYHPENNEDPTLSDCTSSPLPIGKKVVRSYS*****************YCREVQCIEMEGSSRFKNFESHALSNGENEGTLALTYEDGDVTGQEMISTPVNGDREERRIQNGFTYGALEQRLNNVQKTIESLVSPYPDA************************************************PPNGFEKNFPGRPEGFQKKLFSYGT**********************ADEDITSIQTFVAGLNKMAKNQETGLQADNSEKNVKDVGLDPMHEALETPENWPVEFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRERETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPLTTPRRRSL**********
***********PLS*********PHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAG***********ARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRS*****STCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG***************HKQVSDIWEDEYS****************VKKSNTTRFYDTESENNSEYLYHP*NNE*****DCTSSPLPIGKKVVRSYSGKSLEENAGATTEDSDEYCREVQCIEME*********************************************************************IESL****************************************SSSPSLEKG*QIESTPPNGFEKNFPG*****QKKL*******************************ITSIQTFVAGLNKMAKNQETGLQA*************P******TPENWPVEFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQG**********S**S*E*ALRRERETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPL******************
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MKQPIGNASMTPLSYTETPFGKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVxxxxxxxxxxxxxxxxxxxxxLRSPAPASSTCDYVALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVGCDQDSRQETGRNHNSHKQVSDIWEDEYSESEASGVADLHRMKNGVKKSNTTRFYDTESENNSEYLYHPENNEDPTLSDCTSSPLPIGKKVVRSYSGKSLEENAGATTEDSDEYCREVQCIEMEGSSRFKNFESHALSNGENEGTLALTYEDGDVTGQEMISTPVNGDREERRIQNGFTYGALEQRLNNVQKTIESLVSPYPDAGESSLRSLAEDMSSSRSLSLARSRSCRAKLMAGSSSPSLEKGEQIESTPPNGFEKNFPGRPEGFQKKLFSYGTNTSSLSRNDSLSSLESASIKTSADEDITSIQTFVAGLNKMAKNQETGLQADNSEKNVKDVGLDPMHEALETPENWPVEFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVLSxxxxxxxxxxxxxxxxxxxxxRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPLTTPRRRSLGWKHSMASLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query920 2.2.26 [Sep-21-2011]
Q6S001685 Kinesin-related protein 1 yes no 0.381 0.512 0.417 3e-70
Q54NP8 1922 Kinesin-related protein 4 no no 0.335 0.160 0.435 2e-67
Q02224 2701 Centromere-associated pro yes no 0.366 0.124 0.433 9e-66
Q6RT24 2474 Centromere-associated pro yes no 0.358 0.133 0.435 2e-65
O15066747 Kinesin-like protein KIF3 no no 0.344 0.424 0.384 2e-55
Q61771747 Kinesin-like protein KIF3 no no 0.344 0.424 0.378 7e-55
P46869786 Kinesin-like protein FLA1 N/A no 0.346 0.405 0.353 5e-53
P46871742 Kinesin-II 95 kDa subunit no no 0.333 0.413 0.378 8e-53
P46873699 Osmotic avoidance abnorma yes no 0.327 0.430 0.386 1e-52
P46872699 Kinesin-II 85 kDa subunit no no 0.327 0.430 0.380 3e-52
>sp|Q6S001|KIF11_DICDI Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1 Back     alignment and function desciption
 Score =  267 bits (683), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 232/371 (62%), Gaps = 20/371 (5%)

Query: 34  DRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG-------ITEC 86
           D +F   C   +VY+  A+E+  S + G N+SI AYG TSSGKT+TMTG       I   
Sbjct: 120 DHLFPPTCDNYEVYDTVARELVKSAMEGYNASIMAYGITSSGKTFTMTGSGKKNPGIIPL 179

Query: 87  TVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPEKGVVVEKVT 144
           ++ DIF YI   +ER F+L+ S +EIYNE + DLL  +  N  L++ + P  GV V  + 
Sbjct: 180 SIQDIFTYIQECKEREFLLRVSYLEIYNETVNDLLGVNQENFNLKIHEHPVTGVYVAGLK 239

Query: 145 EEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL------GKE 198
           EEI+    H+  L+S  EA R +G T  N +SSRSH I +++IES  +E L      G  
Sbjct: 240 EEIVLSVEHVLSLISAGEAHRHVGSTSYNLQSSRSHTIFKMIIES--KEVLPEGSGSGGL 297

Query: 199 NSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINY 258
            S    +++N +DLAGSE+AS++  +  R KEG +IN+SLLTL TVI KLS+   G+I Y
Sbjct: 298 ESPVRYSTLNLIDLAGSEKASESTISAIRNKEGSYINKSLLTLGTVISKLSEKDTGYIPY 357

Query: 259 RDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSD 318
           RDSKLTR+LQ  L GN+R AIICT++ A ++ E++ NTL FA  AK+++  A+VN ++ D
Sbjct: 358 RDSKLTRVLQNSLSGNSRVAIICTITLASNNFEESHNTLKFASRAKKISNNAKVNEILDD 417

Query: 319 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQI--QKMEREIRELTKQRDLA 376
           KAL+K  + E+A L+S+L S A ++       L  K+ ++I  Q++  ++ +  K R L 
Sbjct: 418 KALLKQYRNEIAELKSKL-SDALSTEKELQETLTEKEKMKITNQELLHKLVDAEKHRSLL 476

Query: 377 QSRVEDLLRMV 387
           +S++ +L +++
Sbjct: 477 ESKINNLNKLI 487
Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end.
Dictyostelium discoideum (taxid: 44689)
>sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1 Back     alignment and function description
>sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2 Back     alignment and function description
>sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1 Back     alignment and function description
>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 Back     alignment and function description
>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1 Back     alignment and function description
>sp|P46869|FLA10_CHLRE Kinesin-like protein FLA10 OS=Chlamydomonas reinhardtii GN=FLA10 PE=1 SV=1 Back     alignment and function description
>sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1 Back     alignment and function description
>sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 OS=Caenorhabditis elegans GN=osm-3 PE=2 SV=4 Back     alignment and function description
>sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP85 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query920
359474911957 PREDICTED: uncharacterized protein LOC10 0.95 0.913 0.708 0.0
147775817969 hypothetical protein VITISV_029516 [Viti 0.951 0.902 0.7 0.0
224105297945 predicted protein [Populus trichocarpa] 0.907 0.883 0.645 0.0
449461619930 PREDICTED: kinesin-like protein KIN12B-l 0.920 0.910 0.632 0.0
356544453885 PREDICTED: uncharacterized protein LOC10 0.866 0.900 0.606 0.0
356541062898 PREDICTED: uncharacterized protein LOC10 0.882 0.904 0.600 0.0
356509547897 PREDICTED: uncharacterized protein LOC10 0.873 0.896 0.582 0.0
297735041973 unnamed protein product [Vitis vinifera] 0.952 0.900 0.555 0.0
359476842960 PREDICTED: uncharacterized protein LOC10 0.947 0.908 0.557 0.0
42569214862 ATP binding microtubule motor family pro 0.844 0.901 0.571 0.0
>gi|359474911|ref|XP_002275329.2| PREDICTED: uncharacterized protein LOC100250389 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/899 (70%), Positives = 723/899 (80%), Gaps = 25/899 (2%)

Query: 33  IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIF 92
            D+VF GDC+T QVYE+ AKEIALSVV+GINSSIFAYGQTSSGKTYTM GITE TVADI+
Sbjct: 73  FDKVFRGDCTTRQVYEEAAKEIALSVVNGINSSIFAYGQTSSGKTYTMIGITEYTVADIY 132

Query: 93  DYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWN 152
           DYI  HEERAFVLKFSAMEIYNEA+RDLLSTDN PLRLLDDPE+G +VEK+TEE L+DW+
Sbjct: 133 DYIQNHEERAFVLKFSAMEIYNEAVRDLLSTDNLPLRLLDDPERGTIVEKLTEETLRDWS 192

Query: 153 HLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 212
           HLK LLSICEAQR+IGET LNE SSRSHQI+RL IESSAREFLGK NSTTL+ASVNFVDL
Sbjct: 193 HLKNLLSICEAQRQIGETSLNETSSRSHQILRLTIESSAREFLGKGNSTTLAASVNFVDL 252

Query: 213 AGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLG 272
           AGSERASQA+S GARLKEGCHINRSLLTL TVIRKLSKGR GH+NYRDSKLTR+LQP LG
Sbjct: 253 AGSERASQAMSAGARLKEGCHINRSLLTLGTVIRKLSKGRQGHVNYRDSKLTRILQPSLG 312

Query: 273 GNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARL 332
           GNARTAIICTLSPARSHVEQ+RNTLLFA CAKEVTTKAQVNVVMSDKALVKHLQKELARL
Sbjct: 313 GNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTKAQVNVVMSDKALVKHLQKELARL 372

Query: 333 ESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQD 392
           ESELRSPAPASSTCD+ ALLRKKDLQI KME+EIRELTK RD+A+SRVEDLL+M+G DQ 
Sbjct: 373 ESELRSPAPASSTCDHTALLRKKDLQIDKMEKEIRELTKLRDIAESRVEDLLQMIGNDQS 432

Query: 393 SRQETGRNHNSHKQVSDIWEDEYSESEAS-GVADLHRMKNGVKKSNTTRFYDTESENNSE 451
           S Q TG  ++   QV   WED+ S SEA  G  D+     GV+  NTT++    S +N++
Sbjct: 433 SSQWTGIRNDPKSQVGIKWEDDCSVSEADPGCRDI-----GVRSFNTTQYSGRGSGSNTQ 487

Query: 452 YLYH--PENNEDPTLSDCTSSPLPIGKKVVRSYSGKSLEENAGATTEDSDEYCREVQCIE 509
             YH  P+ +E  +  D  SSP+ +G   VR       EE A    ED D+  +EV+CIE
Sbjct: 488 EKYHQLPQYSEGHSPFDGPSSPISVGNGFVRPDPRCGQEEIALEAGEDPDDLYKEVRCIE 547

Query: 510 MEGSSRFKNFESHALSNGENEGTLALTYEDGDVTGQEMISTPVNGDREERRIQNGFTYGA 569
           +E SS+ KN +S   S GENEG +A++  +GDVT  E+IS P  G+RE   IQNGFTYGA
Sbjct: 548 IEESSKHKNLKSLDTSTGENEG-MAVS-GNGDVTDGEIISAPTKGEREVSHIQNGFTYGA 605

Query: 570 LEQRLNNVQKTIESLVSPYPDAGESSLRSLAEDMSSSRSLSLARSRSCRAKLMAGSSSPS 629
           LEQ++ +VQKTIESLVSPYPD  E S  +L  D  SSRSL+L RS SCRA LM GSSSP 
Sbjct: 606 LEQKIQDVQKTIESLVSPYPD--EPSPWALDADTPSSRSLTLTRSWSCRANLMTGSSSP- 662

Query: 630 LEKGEQIESTPPNGFEKNFPGRPEGFQKK--LFSYGTNTSSLSRNDSLSSLESASI---- 683
            EK EQ  STPP+GFEK+FPGRPE F+++    +YG N   LSR DS SS  SA +    
Sbjct: 663 CEKVEQRLSTPPSGFEKDFPGRPESFRRRHPPLNYGANMPRLSRTDSQSSFGSAFVDELK 722

Query: 684 --KTSADEDITSIQTFVAGLNKMAKNQETGLQADNSEKNVKDVGLDPMHEALETPENWPV 741
             KTSADEDITSIQTFVAGL +MAK QETG +AD  EKNVKDVGLDPM E   T  +WP+
Sbjct: 723 AEKTSADEDITSIQTFVAGLKEMAK-QETGTRADKLEKNVKDVGLDPMQEG--TLPDWPL 779

Query: 742 EFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMA 801
           EFERQ+RE+ +LWQTCNVSL+HRTYFFLLFRGDP DSIYM VEL+RLSFLKE+FSQGN +
Sbjct: 780 EFERQQREIIELWQTCNVSLIHRTYFFLLFRGDPMDSIYMEVELRRLSFLKETFSQGNQS 839

Query: 802 MQDGRVLSLASSERALRRERETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHL 861
           ++DGR L+ ASS RALRRERETLSKLM +R S  ERN+L+QKWGI L+SKRRRLQLA  L
Sbjct: 840 LEDGRTLTQASSIRALRRERETLSKLMHKRFSEGERNRLFQKWGIKLDSKRRRLQLAQRL 899

Query: 862 WSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPLTTPRRRSLGWKHSMASLL 920
           WSN+ DM+ + ESAAI+AKLI+FVEQG ALK MFGLSFTP  T RRRS GWKHSM SLL
Sbjct: 900 WSNTTDMSHVNESAAIVAKLIKFVEQGQALKEMFGLSFTPHRT-RRRSYGWKHSMGSLL 957

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147775817|emb|CAN75924.1| hypothetical protein VITISV_029516 [Vitis vinifera] gi|297744725|emb|CBI37987.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224105297|ref|XP_002313758.1| predicted protein [Populus trichocarpa] gi|222850166|gb|EEE87713.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449461619|ref|XP_004148539.1| PREDICTED: kinesin-like protein KIN12B-like [Cucumis sativus] gi|449520157|ref|XP_004167100.1| PREDICTED: kinesin-like protein KIN12B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356544453|ref|XP_003540665.1| PREDICTED: uncharacterized protein LOC100820012 [Glycine max] Back     alignment and taxonomy information
>gi|356541062|ref|XP_003539002.1| PREDICTED: uncharacterized protein LOC100788096 [Glycine max] Back     alignment and taxonomy information
>gi|356509547|ref|XP_003523509.1| PREDICTED: uncharacterized protein LOC100799379 [Glycine max] Back     alignment and taxonomy information
>gi|297735041|emb|CBI17403.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359476842|ref|XP_003631897.1| PREDICTED: uncharacterized protein LOC100854194 [Vitis vinifera] Back     alignment and taxonomy information
>gi|42569214|ref|NP_179726.2| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|79322634|ref|NP_001031385.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|330252063|gb|AEC07157.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|330252064|gb|AEC07158.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query920
TAIR|locus:2050115862 AT2G21300 [Arabidopsis thalian 0.495 0.529 0.670 8.3e-223
TAIR|locus:2120272836 AT4G38950 [Arabidopsis thalian 0.533 0.587 0.622 5.7e-213
TAIR|locus:2155051 1063 AT5G66310 [Arabidopsis thalian 0.532 0.460 0.547 1.6e-188
TAIR|locus:21350061004 AT4G24170 [Arabidopsis thalian 0.432 0.396 0.634 2.5e-162
TAIR|locus:2084701938 TES "TETRASPORE" [Arabidopsis 0.378 0.371 0.603 1.9e-146
TAIR|locus:2014069974 HIK "HINKEL" [Arabidopsis thal 0.391 0.369 0.574 5e-142
UNIPROTKB|Q8S950959 nack1 "Kinesin-like protein NA 0.376 0.360 0.605 2.7e-141
TAIR|locus:2162351 1087 AT5G42490 [Arabidopsis thalian 0.235 0.199 0.660 5.1e-113
UNIPROTKB|O42263 2954 cenpe "Kinesin-related protein 0.432 0.134 0.394 6.7e-68
DICTYBASE|DDB_G0291039685 kif11 "kinesin-7" [Dictyosteli 0.381 0.512 0.404 1.8e-62
TAIR|locus:2050115 AT2G21300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1517 (539.1 bits), Expect = 8.3e-223, Sum P(2) = 8.3e-223
 Identities = 313/467 (67%), Positives = 366/467 (78%)

Query:    34 DRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFD 93
             DRV+ G+C T QVYEDG KE+ALSVV GINSSIFAYGQTSSGKTYTM+GITE  VADIFD
Sbjct:    74 DRVYRGECPTRQVYEDGPKEVALSVVKGINSSIFAYGQTSSGKTYTMSGITEFAVADIFD 133

Query:    94 YIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDWNH 153
             YI +HE+RAFV+KFSA+EIYNEAIRDLLS D+TPLRL DDP             L+DWNH
Sbjct:   134 YIFKHEDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKGAAVEKATEETLRDWNH 193

Query:   154 LKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLA 213
             LKEL+S+CEAQR+IGET LNE+SSRSHQII+L +ESSAREFLGKENSTTL ASVNF+DLA
Sbjct:   194 LKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKENSTTLMASVNFIDLA 253

Query:   214 GSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGG 273
             GSERASQALS GARLKEGCHINRSLLTL TVIRKLS GR GHINYRDSKLTR+LQPCLGG
Sbjct:   254 GSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYRDSKLTRILQPCLGG 313

Query:   274 NARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLE 333
             NARTAI+CTLSPARSHVEQTRNTLLFACCAKEVTTKAQ+NVVMSDKALVK LQ+ELARLE
Sbjct:   314 NARTAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQINVVMSDKALVKQLQRELARLE 373

Query:   334 SELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDS 393
             SELR+PAPA+S+CD    LRKKDLQIQKME+++ E+TKQRD+AQSR+ED ++MV  + D+
Sbjct:   374 SELRNPAPATSSCDCGVTLRKKDLQIQKMEKQLAEMTKQRDIAQSRLEDFMKMV--EHDA 431

Query:   394 RQETGRNHNSHKQVSDIWEDEYSESEASGVADLHR---MKNGVKKS-NTTRFY-DTESEN 448
               + G  H  ++  ++ WED  S SE SGV D  R   + +G     +T R +  + S++
Sbjct:   432 SSKAGTPHFRNR--TNKWEDG-SVSEISGVVDPDRTSFISDGTSTPLSTARAHVRSHSDD 488

Query:   449 NSEYLYHPENNEDPTLSDCTSSPLPIGKKVVRSYSGKSLEENAGATT 495
             + E    P ++ D +   C        ++  R  +  S EE   A T
Sbjct:   489 DLEEEMSPRHSGDQSEEYCKEVQCIEMEESTRDINNDS-EERTDAET 534
GO:0003777 "microtubule motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2120272 AT4G38950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155051 AT5G66310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135006 AT4G24170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084701 TES "TETRASPORE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014069 HIK "HINKEL" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8S950 nack1 "Kinesin-like protein NACK1" [Nicotiana tabacum (taxid:4097)] Back     alignment and assigned GO terms
TAIR|locus:2162351 AT5G42490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O42263 cenpe "Kinesin-related protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291039 kif11 "kinesin-7" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query920
cd01374321 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E 1e-140
pfam00225326 pfam00225, Kinesin, Kinesin motor domain 1e-110
smart00129335 smart00129, KISc, Kinesin motor, catalytic domain 1e-107
cd00106328 cd00106, KISc, Kinesin motor domain 7e-89
pfam11995162 pfam11995, DUF3490, Domain of unknown function (DU 1e-86
cd01370338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 5e-79
cd01369325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 7e-74
cd01371333 cd01371, KISc_KIF3, Kinesin motor domain, kinesins 1e-72
cd01366329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 3e-72
cd01365356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 1e-71
cd01372341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 7e-71
cd01364352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 5e-65
cd01367322 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF 7e-63
COG5059568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 9e-62
cd01373337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 9e-59
cd01375334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 3e-55
cd01376319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 1e-49
PLN03188 1320 PLN03188, PLN03188, kinesin-12 family protein; Pro 3e-49
cd01368345 cd01368, KISc_KIF23_like, Kinesin motor domain, KI 4e-43
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 2e-27
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 5e-06
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information 
 Score =  419 bits (1079), Expect = e-140
 Identities = 156/280 (55%), Positives = 191/280 (68%), Gaps = 10/280 (3%)

Query: 34  DRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECT 87
           DRVF G+ +  +VYE  AK +  S + G N +IFAYGQTSSGKT+TM+      GI    
Sbjct: 45  DRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLA 104

Query: 88  VADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEI 147
           V DIF  I    +R F+L+ S +EIYNE I+DLLS     LR+ +DP KGVVV  +TEEI
Sbjct: 105 VRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEI 164

Query: 148 LKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASV 207
           +    HL +L++  E  R +GET  NE+SSRSH I +L IES  R     E+ T   +++
Sbjct: 165 VTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS--ESGTVRVSTL 222

Query: 208 NFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN-GHINYRDSKLTRM 266
           N +DLAGSERASQ    G R KEG  IN+SLLTL TVI KLS+G+N GHI YRDSKLTR+
Sbjct: 223 NLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRI 281

Query: 267 LQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306
           LQP L GNARTAIICT+SPA SHVE+T NTL FA  AK+V
Sbjct: 282 LQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|221365 pfam11995, DUF3490, Domain of unknown function (DUF3490) Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 920
PF11995161 DUF3490: Domain of unknown function (DUF3490); Int 100.0
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG4280574 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0242675 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG02431041 consensus Kinesin-like protein [Cytoskeleton] 100.0
PLN03188 1320 kinesin-12 family protein; Provisional 100.0
KOG0240607 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] 100.0
cd01373337 KISc_KLP2_like Kinesin motor domain, KLP2-like sub 100.0
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01370338 KISc_KIP3_like Kinesin motor domain, KIP3-like sub 100.0
cd01368345 KISc_KIF23_like Kinesin motor domain, KIF23-like s 100.0
cd01365356 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p 100.0
cd01364352 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind 100.0
cd01371333 KISc_KIF3 Kinesin motor domain, kinesins II or KIF 100.0
cd01374321 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like 100.0
cd01367322 KISc_KIF2_like Kinesin motor domain, KIF2-like gro 100.0
cd01375334 KISc_KIF9_like Kinesin motor domain, KIF9-like sub 100.0
cd01376319 KISc_KID_like Kinesin motor domain, KIF22/Kid-like 100.0
cd01372341 KISc_KIF4 Kinesin motor domain, KIF4-like subfamil 100.0
cd01369325 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy 100.0
cd01366329 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ 100.0
PF00225335 Kinesin: Kinesin motor domain; InterPro: IPR001752 100.0
smart00129335 KISc Kinesin motor, catalytic domain. ATPase. Micr 100.0
cd00106328 KISc Kinesin motor domain. This catalytic (head) d 100.0
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 100.0
KOG0244913 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0246676 consensus Kinesin-like protein [Cytoskeleton] 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 100.0
KOG0247809 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01363186 Motor_domain Myosin and Kinesin motor domain. Thes 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 96.58
COG0556663 UvrB Helicase subunit of the DNA excision repair c 94.77
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.2
PRK06893229 DNA replication initiation factor; Validated 91.45
PRK06620214 hypothetical protein; Validated 90.7
PRK12377248 putative replication protein; Provisional 89.76
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 89.01
PRK07952244 DNA replication protein DnaC; Validated 88.58
PRK14086617 dnaA chromosomal replication initiation protein; P 88.57
PRK08116268 hypothetical protein; Validated 88.51
PRK06526254 transposase; Provisional 87.44
PRK05642234 DNA replication initiation factor; Validated 87.13
PRK14088440 dnaA chromosomal replication initiation protein; P 87.04
PRK00149450 dnaA chromosomal replication initiation protein; R 86.64
TIGR00362405 DnaA chromosomal replication initiator protein Dna 86.6
PRK06835329 DNA replication protein DnaC; Validated 86.38
PRK09087226 hypothetical protein; Validated 86.35
PF04851184 ResIII: Type III restriction enzyme, res subunit; 85.69
PRK08084235 DNA replication initiation factor; Provisional 85.53
PRK14087450 dnaA chromosomal replication initiation protein; P 85.01
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 84.85
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 83.66
PRK10884206 SH3 domain-containing protein; Provisional 83.02
PRK08903227 DnaA regulatory inactivator Hda; Validated 82.31
PRK08939306 primosomal protein DnaI; Reviewed 82.31
PRK08181269 transposase; Validated 81.94
COG0593408 DnaA ATPase involved in DNA replication initiation 81.93
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 81.8
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 81.26
PRK08727233 hypothetical protein; Validated 80.21
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised Back     alignment and domain information 
Probab=100.00  E-value=2.1e-89  Score=664.69  Aligned_cols=161  Identities=66%  Similarity=1.107  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHhhhcccceeecceeeeeecCCCCCceeEEeeehhhhhHHHHhhcCCccccCCccccHHHHHHHHHHHH
Q 002455          742 EFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRER  821 (920)
Q Consensus       742 ~F~~~~~eIIeLW~~C~VslvHRTyFfLLfkGD~~D~iYmEVElRRL~~l~~~~~~~~~~~~~~~~~~~~ss~k~l~~er  821 (920)
                      +||+||++||||||+|||||||||||||||||||+|+||||||||||+|||+||+++++|++|++++|++||+|||+|||
T Consensus         1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER   80 (161)
T PF11995_consen    1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER   80 (161)
T ss_pred             ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHhhCCCCCcccchhhhhhhccCCcccchhHHHHHHHHHHHhhhccccccccccccccccC
Q 002455          822 ETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTP  901 (920)
Q Consensus       822 ~~l~k~~~~~l~~~ere~ly~kw~i~l~~k~r~lql~~~lwt~~~d~~hv~esa~~vaklv~~~e~~~~~kemf~l~f~~  901 (920)
                      +||||||++||+.+|||+||.||||||+||||||||||+|||||+||+||+|||+||||||||||||+|+||||||||+|
T Consensus        81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~  160 (161)
T PF11995_consen   81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP  160 (161)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 002455          902 L  902 (920)
Q Consensus       902 ~  902 (920)
                      |
T Consensus       161 ~  161 (161)
T PF11995_consen  161 P  161 (161)
T ss_pred             C
Confidence            6

This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG4280 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0242 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] Back     alignment and domain information
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group Back     alignment and domain information
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>smart00129 KISc Kinesin motor, catalytic domain Back     alignment and domain information
>cd00106 KISc Kinesin motor domain Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0244 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0246 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0247 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query920
1t5c_A349 Crystal Structure Of The Motor Domain Of Human Kine 5e-57
3b6u_A372 Crystal Structure Of The Motor Domain Of Human Kine 9e-50
2y5w_A365 Crystal Structure Of Drosophila Melanogaster Kinesi 6e-46
1mkj_A349 Human Kinesin Motor Domain With Docked Neck Linker 8e-45
4atx_C340 Rigor Kinesin Motor Domain With An Ordered Neck-Lin 2e-44
1bg2_A325 Human Ubiquitous Kinesin Motor Domain Length = 325 9e-44
3b6v_A395 Crystal Structure Of The Motor Domain Of Human Kine 1e-42
1sdm_A369 Crystal Structure Of Kinesin-Like Calmodulin Bindin 4e-41
3h4s_A386 Structure Of The Complex Of A Mitotic Kinesin With 1e-39
1goj_A355 Structure Of A Fast Kinesin: Implications For Atpas 2e-39
2vvg_A350 Crystal Structure Of The G.Intestinalis Kinesin 2 G 2e-39
1ia0_K394 Kif1a Head-Microtubule Complex Structure In Atp-For 1e-38
4a14_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 2e-38
1i5s_A367 Crystal Structure Of The Kif1a Motor Domain Complex 2e-38
1vfv_A366 Crystal Structure Of The Kif1a Motor Domain Complex 3e-38
2wbe_C373 Kinesin-5-Tubulin Complex With Amppnp Length = 373 3e-38
4aqv_C373 Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma 4e-38
1i6i_A366 Crystal Structure Of The Kif1a Motor Domain Complex 4e-38
4ap0_A370 The Mitotic Kinesin Eg5 In Complex With Mg-Adp And 5e-37
3hqd_A369 Human Kinesin Eg5 Motor Domain In Complex With Ampp 5e-37
1ii6_A368 Crystal Structure Of The Mitotic Kinesin Eg5 In Com 5e-37
1q0b_A367 Crystal Structure Of The Motor Protein Ksp In Compl 5e-37
4a1z_A368 Eg5-1 Length = 368 6e-37
1x88_A359 Human Eg5 Motor Domain Bound To Mg-Adp And Monastro 6e-37
4a28_A368 Eg5-2 Length = 368 7e-37
2owm_A443 Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 5e-36
3gbj_A354 Crystal Structure Of The Motor Domain Of Kinesin Ki 5e-36
3lre_A355 Crystal Structure Analysis Of Human Kinesin-8 Motor 9e-36
3zcw_A348 Eg5 - New Allosteric Binding Site Length = 348 2e-35
2xt3_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 3e-35
3u06_A412 Crystal Structure Of The Kinesin-14 Ncdg347d Length 4e-34
1cz7_A406 The Crystal Structure Of A Minus-End Directed Micro 4e-34
2ncd_A420 Ncd (Non-Claret Disjunctional) Dimer From D. Melano 5e-34
2h58_A330 Crystal Structure Of The Kifc3 Motor Domain In Comp 2e-33
1n6m_A409 Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY 2e-33
3l1c_A383 Kinesin-14 Protein Ncd, T436s Mutant Length = 383 2e-33
4h1g_A715 Structure Of Candida Albicans Kar3 Motor Domain Fus 1e-32
3nwn_A359 Crystal Structure Of The Human Kif9 Motor Domain In 1e-32
4etp_A403 C-Terminal Motor And Motor Homology Domain Of Kar3v 2e-31
3bfn_A388 Crystal Structure Of The Motor Domain Of Human Kine 1e-30
4gkr_A371 Structure Of The C-Terminal Motor Domain Of Kar3 Fr 2e-30
3kar_A346 The Motor Domain Of Kinesin-Like Protein Kar3, A Sa 7e-30
1f9t_A358 Crystal Structures Of Kinesin Mutants Reveal A Sign 8e-30
1f9w_A347 Crystal Structures Of Mutants Reveal A Signalling P 4e-29
1f9u_A347 Crystal Structures Of Mutants Reveal A Signalling P 5e-29
1f9v_A347 Crystal Structures Of Mutants Reveal A Signalling P 5e-29
2rep_A376 Crystal Structure Of The Motor Domain Of Human Kine 1e-28
3t0q_A349 Motor Domain Structure Of The Kar3-Like Kinesin Fro 2e-28
1ry6_A360 Crystal Structure Of Internal Kinesin Motor Domain 3e-26
2heh_A387 Crystal Structure Of The Kif2c Motor Domain (Casp T 5e-26
1v8j_A410 The Crystal Structure Of The Minimal Functional Dom 9e-26
3edl_D331 Kinesin13-Microtubule Ring Complex Length = 331 2e-25
2gry_A420 Crystal Structure Of The Human Kif2 Motor Domain In 8e-25
2kin_A238 Kinesin (Monomeric) From Rattus Norvegicus Length = 2e-22
3pxn_A344 Crystal Structure Of The Drosophila Kinesin Family 7e-22
3dc4_A344 Crystal Structure Of The Drosophila Kinesin Family 1e-21
3kin_B117 Kinesin (Dimeric) From Rattus Norvegicus Length = 1 1e-11
2kin_B100 Kinesin (Monomeric) From Rattus Norvegicus Length = 4e-11
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 Back     alignment and structure 
Iteration: 1

 Score =  219 bits (558), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 133/297 (44%), Positives = 176/297 (59%), Gaps = 13/297 (4%)
Query: 33  IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG------ITEC 86
            DRVF G+ +T  VYE+ A  I  S + G N +IFAYGQT+SGKTYTM G      +   
Sbjct: 48  FDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPR 107
Query: 87  TVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPXXXXXXXXXX 144
            + DIF  I +  +R F+L+ S MEIYNE I DLL  +    PL + +D           
Sbjct: 108 AIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLT 167
Query: 145 XXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAR-EFLGKENSTTL 203
             ++       + ++  E  R  GET +N++SSRSH I R+++ES  + E    E S  +
Sbjct: 168 EEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKV 227
Query: 204 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSK 262
           S  +N VDLAGSERA+Q  + G RLKEGC+INRSL  L  VI+KLS G+  G INYRDSK
Sbjct: 228 S-HLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSK 286
Query: 263 LTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 319
           LTR+LQ  LGGNA+T IICT++P     ++T   L FA  AK +     VN V +D+
Sbjct: 287 LTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 Back     alignment and structure
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 Back     alignment and structure
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 Back     alignment and structure
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 Back     alignment and structure
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 Back     alignment and structure
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 Back     alignment and structure
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 Back     alignment and structure
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 Back     alignment and structure
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 Back     alignment and structure
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 Back     alignment and structure
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 Back     alignment and structure
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 Back     alignment and structure
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 Back     alignment and structure
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 Back     alignment and structure
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 Back     alignment and structure
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 Back     alignment and structure
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 Back     alignment and structure
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 Back     alignment and structure
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 Back     alignment and structure
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 Back     alignment and structure
>pdb|4A1Z|A Chain A, Eg5-1 Length = 368 Back     alignment and structure
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 Back     alignment and structure
>pdb|4A28|A Chain A, Eg5-2 Length = 368 Back     alignment and structure
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 Back     alignment and structure
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 Back     alignment and structure
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 Back     alignment and structure
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 Back     alignment and structure
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 Back     alignment and structure
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 Back     alignment and structure
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 Back     alignment and structure
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 Back     alignment and structure
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 Back     alignment and structure
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 Back     alignment and structure
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 Back     alignment and structure
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 Back     alignment and structure
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 Back     alignment and structure
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 Back     alignment and structure
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 Back     alignment and structure
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 Back     alignment and structure
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 Back     alignment and structure
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 Back     alignment and structure
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 Back     alignment and structure
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 Back     alignment and structure
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 Back     alignment and structure
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 Back     alignment and structure
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 Back     alignment and structure
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 Back     alignment and structure
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 Back     alignment and structure
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 Back     alignment and structure
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 Back     alignment and structure
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 Back     alignment and structure
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query920
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 1e-144
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 1e-112
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 1e-105
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 1e-105
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 1e-103
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 1e-101
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 1e-101
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 3e-99
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 9e-99
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 2e-96
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 5e-96
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 2e-94
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 1e-93
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 6e-93
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 3e-92
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 1e-91
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 2e-90
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 2e-90
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 3e-90
3u06_A412 Protein claret segregational; motor domain, stalk 1e-89
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 1e-88
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 1e-87
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 4e-87
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 4e-87
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 1e-85
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 2e-84
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 2e-35
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 3e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 Back     alignment and structure
 Score =  431 bits (1110), Expect = e-144
 Identities = 135/302 (44%), Positives = 181/302 (59%), Gaps = 11/302 (3%)

Query: 34  DRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC------T 87
           DRVF G+ +T  VYE+ A  I  S + G N +IFAYGQT+SGKTYTM G  +        
Sbjct: 49  DRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRA 108

Query: 88  VADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPEKGVVVEKVTE 145
           + DIF  I +  +R F+L+ S MEIYNE I DLL  +    PL + +D  + V V  +TE
Sbjct: 109 IHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTE 168

Query: 146 EILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSA 205
           E++       + ++  E  R  GET +N++SSRSH I R+++ES  +        +   +
Sbjct: 169 EVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVS 228

Query: 206 SVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG-HINYRDSKLT 264
            +N VDLAGSERA+Q  + G RLKEGC+INRSL  L  VI+KLS G+ G  INYRDSKLT
Sbjct: 229 HLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLT 288

Query: 265 RMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKH 324
           R+LQ  LGGNA+T IICT++P     ++T   L FA  AK +     VN V +D+    H
Sbjct: 289 RILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHH 346

Query: 325 LQ 326
             
Sbjct: 347 HH 348
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 920
d1goja_354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 2e-62
d1bg2a_323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 1e-58
d1x88a1345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 2e-56
d2zfia1349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 3e-54
d1f9va_342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 2e-53
d1ry6a_330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 4e-53
d1sdma_364 c.37.1.9 (A:) Kinesin heavy chain-like protein {Po 5e-53
d1v8ka_362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 5e-49
d2ncda_368 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 3e-45
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score =  213 bits (542), Expect = 2e-62
 Identities = 104/313 (33%), Positives = 164/313 (52%), Gaps = 20/313 (6%)

Query: 34  DRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFD 93
           DRVF   C  + +++   K     +++G N ++FAYGQT +GK+YTM G +         
Sbjct: 51  DRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGV 110

Query: 94  YIHRHEE-----------RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEK 142
                E+             + ++ S MEIY E IRDLL+  N  L + ++  +GV V+ 
Sbjct: 111 IPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKG 170

Query: 143 VTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 202
           + E  +     + E++      R +  T +N++SSRSH I  + I          E  + 
Sbjct: 171 LLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQK-----NVETGSA 225

Query: 203 LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSK 262
            S  +  VDLAGSE+  +  ++G  L+E   IN+SL  L  VI  L+ G++ H+ YRDSK
Sbjct: 226 KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSK 285

Query: 263 LTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALV 322
           LTR+LQ  LGGN+RT +I   SP+  +  +T +TL F   AK +  KA+VN  +S     
Sbjct: 286 LTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE-- 343

Query: 323 KHLQKELARLESE 335
             L++ LA+ +++
Sbjct: 344 --LKQMLAKAKTQ 354
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query920
d1sdma_364 Kinesin heavy chain-like protein {Potato (Solanum 100.0
d1goja_354 Kinesin {Neurospora crassa [TaxId: 5141]} 100.0
d1v8ka_362 Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 100.0
d1x88a1345 Kinesin {Human (Homo sapiens), mitotic kinesin eg5 100.0
d2zfia1349 Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 100.0
d1bg2a_323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ry6a_330 Kinesin {Malaria parasite (Plasmodium falciparum) 100.0
d1f9va_342 Kinesin motor Ncd (non-claret disjunctional) {Bake 100.0
d2ncda_368 Kinesin motor Ncd (non-claret disjunctional) {Frui 100.0
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 94.78
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 94.7
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 89.71
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 89.16
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 88.63
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 87.29
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 85.0
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 84.87
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 84.33
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=0  Score=573.54  Aligned_cols=301  Identities=37%  Similarity=0.569  Sum_probs=275.9

Q ss_pred             CCCCEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC------CCCHHHHHHHHHHHHHCC-
Q ss_conf             6792140567499999399999869999999738855989974468767523248------882567999999998134-
Q 002455           27 HLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-   99 (920)
Q Consensus        27 ~~ksFtFD~VF~~~asQeeVYe~~vkpLV~svL~G~N~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~~-   99 (920)
                      ..+.|+||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+      |++|+++.+||..+.... 
T Consensus        40 ~~~~f~FD~vf~~~~~q~~vy~~-v~~lv~~~l~G~n~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~  118 (364)
T d1sdma_          40 KAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSN  118 (364)
T ss_dssp             SEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEECCEECCCCCCHHHHHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             85477788564999998999998-99999999669850355223478776201656766551367899998865531034


Q ss_pred             CCCEEEEEEEEEEECCCEEECCCCCCC---CCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             672899730123443413536899999---93432179998696342689937988999999999963111212235677
Q 002455          100 ERAFVLKFSAMEIYNEAIRDLLSTDNT---PLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKS  176 (920)
Q Consensus       100 ~~~f~V~vS~lEIYNE~V~DLL~~~~~---~L~i~ed~~~g~~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~S  176 (920)
                      ...|.|++||+|||||+|+|||.+...   .+.+++++.++++|.|++++.|.++++++.++..|..+|+++.|.+|..|
T Consensus       119 ~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~s  198 (364)
T d1sdma_         119 KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQS  198 (364)
T ss_dssp             TEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHH
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCC
T ss_conf             65536999988872363223357654555443313314676020353000117788978986406600044534354103


Q ss_pred             CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             87400899999712101248888502799999998689853223333112233210131008999999999516999744
Q 002455          177 SRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHI  256 (920)
Q Consensus       177 SRSH~IftI~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSEr~~kt~s~g~rlkEg~~INkSLlaLg~VI~aLs~gk~~hI  256 (920)
                      ||||+||++++++...     .......++|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.+. .||
T Consensus       199 sRsH~i~~i~v~~~~~-----~~~~~~~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~-~~i  272 (364)
T d1sdma_         199 SRSHLIVSVIIESTNL-----QTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHI  272 (364)
T ss_dssp             HHSEEEEEEEEEEEET-----TTCCEEEEEEEEEECCCCSCCCC---------CCCTTCHHHHHHHHHHHHHHHTC-SCC
T ss_pred             CCCCEEEEEEEEEECC-----CCCEEEEEEEEEECHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCC
T ss_conf             3363599999997036-----7650356799840410035200146667502332335643206899999997499-757


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             68898221255545789853105741699833089999999999983013333044111697999999999999999985
Q 002455          257 NYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESEL  336 (920)
Q Consensus       257 PYRDSKLTrLLqdSLGGNskT~iI~tISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~lik~Lq~Ei~rLe~eL  336 (920)
                      |||+||||+||+++|||||+|+|||||||+..+++||++||+||++|++|+|+|++|+...   .+.+|+++++.|+.++
T Consensus       273 pyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n~~~~---~~~~l~~~i~~l~~~~  349 (364)
T d1sdma_         273 PYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSK---EVARLKKLVSYWKEQA  349 (364)
T ss_dssp             CGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCCEECH---HHHHHHTTTTCC----
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH---HHHHHHHHHHHHHHHH
T ss_conf             7301121388786349995099999969870018999999999999842066783557989---9999999999999998


Q ss_pred             C
Q ss_conf             2
Q 002455          337 R  337 (920)
Q Consensus       337 ~  337 (920)
                      .
T Consensus       350 ~  350 (364)
T d1sdma_         350 G  350 (364)
T ss_dssp             -
T ss_pred             H
T ss_conf             7
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure