Citrus Sinensis ID: 002459

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------92
MSRRVRRKVARRGKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFTIPGGRHAMHHASLMQGAGAARVLRAAAAAAAAPIEAKIFARIVLRNLEHHHHVELSI
ccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHcHHHHHHccccccccccccccccccHHHHHHHHHcccccEEEEEcccccHHHHHHHccccccEEcccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccc
ccHHHHHHHHHcccccEEEccccccccccccccccccEccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHccHHHccccHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHccHHEccccccHHHHHHHHHHHHHcHHHHEEcccccHHHHHcHHHHHHHHHHcccccEEEccccEEccHHHHHHHHHHcHHHHHEcccccccccHHHHHHHHccEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHcccccEEEEEcccccEcccccccccccccHEEEEEHHHHHHHHHHHcccHccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHEEccccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHcHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccc
MSRRVRRKVArrgkekvvlpsypevedevigseknevvdwtslpddtVIQLMSCLnyrdraslsSTCRTWralgaspclwssldlrahkCDIAMAASLASRCMNLQKLrfrgaesaDSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALeslqlgpdfcERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKlcpnltdigfldclnvDEVALGNVLSVRFLSVagtsnmkwGVVSQVWhklpklvgldvsrtdvgpitISRLLTSSKSLKVLCalncpvleeennisaVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDwrnsknkdkNLNEIMTWLEWILSHILLrtaesnpqglddfWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVindenasidcgRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAgglwnlsvgeehkgaiadagGVKALVDLIFKWSSGGDGVLERAAGALANlaaddkcsMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAahgdsnsnnsavgQEAGALEALVQLtrsphegvRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQScsnaspglqERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWnlafnpgnalriveEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFAligtstestskcvSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFtipggrhamHHASLMQGAGAARVLRAAAAAAAAPIEAKIFARIVLRNlehhhhvelsi
msrrvrrkvarrgkekvvlpsypevedevigseknevvdwtslpDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPklvgldvsrtdvGPITIsrlltsskslKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAettkneknvfldwrnsknkdkNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALigtstestskCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFTIPGGRHAMHHASLMQGAGAARVLRAAAAAAAAPIEAKIFARIVLRNLEHHHHVELSI
MSrrvrrkvarrgkekvvLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNakvakavaeeggINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERaagalanlaaDDKCSMEVALAGGVHALVMLARSCKFEGVQEQaaralanlaaHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNReaiaaaggvealvvlaQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQafataaassapaaLTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFTIPGGRHAMHHASLMQgagaarvlraaaaaaaaPIEAKIFARIVLRNLEHHHHVELSI
****************************VIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL***************************************EAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAA****AALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFTIPGGRHAMHHASLMQGAGAARVLRAAAAAAAAPIEAKIFARIVL*************
************************************VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSC*****GLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSL*GARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFTIPGGRHAMHHASLMQGAGAARVLRAA*********AKIFARIVLRN***********
**************EKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFA************QVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFTIPGGRHAMHHASLMQGAGAARVLRAAAAAAAAPIEAKIFARIVLRNLEH********
****************************VIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFTIPGGRHAMHHASLMQGAGAARVLRAAAAAAAAPIEAKIFARIVLRNLEHH*******
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MSRRVRRKVARRGKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFTIPGGRHAMHHASLMQGAGAARVLRAAAAAAAAPIEAKIFARIVLRNLEHHHHVELSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query919 2.2.26 [Sep-21-2011]
O22161930 Protein ARABIDILLO 1 OS=A yes no 0.993 0.981 0.791 0.0
Q9M224928 Protein ARABIDILLO 2 OS=A no no 0.993 0.983 0.765 0.0
O22193826 U-box domain-containing p no no 0.245 0.273 0.327 1e-17
Q4I1B1559 Vacuolar protein 8 OS=Gib yes no 0.276 0.454 0.322 1e-16
Q54I71757 Protein aardvark OS=Dicty yes no 0.280 0.340 0.277 7e-16
Q9SNC6660 U-box domain-containing p no no 0.190 0.265 0.327 3e-15
Q6BTZ4560 Vacuolar protein 8 OS=Deb yes no 0.248 0.407 0.311 2e-14
Q59MN0585 Vacuolar protein 8 OS=Can N/A no 0.248 0.389 0.319 3e-14
Q5EFZ4556 Vacuolar protein 8 OS=Kom yes no 0.420 0.694 0.268 4e-14
Q8GWV5760 U-box domain-containing p no no 0.297 0.359 0.273 7e-14
>sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1 Back     alignment and function desciption
 Score = 1437 bits (3721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 732/925 (79%), Positives = 813/925 (87%), Gaps = 12/925 (1%)

Query: 1   MSRRVRRKVAR-RGKEKVV-LPSYPEV----EDEVIGSEK-NEVVDWTSLPDDTVIQLMS 53
           MSRRVRRK+   +GK+KVV LPSYPE     E++++  E  +  VDW SLP DTV+QL +
Sbjct: 1   MSRRVRRKLEEEKGKDKVVVLPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFT 60

Query: 54  CLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGA 113
           CLNYRDRASL+STC+TWR LGAS CLW+SLDLR HK D +MAASLASRC+NL  LRFRG 
Sbjct: 61  CLNYRDRASLASTCKTWRCLGASSCLWTSLDLRPHKFDASMAASLASRCVNLHYLRFRGV 120

Query: 114 ESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKA 173
           ESADS+IHL+ARNL E+SGDYC+KITDATLS+IVARHEALESLQLGPDFCERITSDA+KA
Sbjct: 121 ESADSLIHLKARNLIEVSGDYCKKITDATLSMIVARHEALESLQLGPDFCERITSDAIKA 180

Query: 174 IALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLS 233
           +A CCPKLKKLRLSGIRD+  +AI ALAK CP L D+GFLDCLN+DE ALG V+SVR+LS
Sbjct: 181 VAFCCPKLKKLRLSGIRDVTSEAIEALAKHCPQLNDLGFLDCLNIDEEALGKVVSVRYLS 240

Query: 234 VAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293
           VAGTSN+KW + S  W KLPKL GLDVSRTD+GP  +SR LTSS+SLKVLCALNC VLEE
Sbjct: 241 VAGTSNIKWSIASNNWDKLPKLTGLDVSRTDIGPTAVSRFLTSSQSLKVLCALNCHVLEE 300

Query: 294 -ENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRN--SKNKDKNLNEIM 350
            E+ IS  + KGK+LLALFT++F  LAS+FA+ TK  K++F  WR      KDK +N+ +
Sbjct: 301 DESLISYNRFKGKVLLALFTNVFDGLASIFADNTKKPKDIFAYWRELMKTTKDKTINDFI 360

Query: 351 TWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVIN 410
            W+EWI+SH LLRTAE NP+GLDDFWL +GA LLL+LMQS+QEDVQER+ATGLATFVV++
Sbjct: 361 HWIEWIISHTLLRTAECNPEGLDDFWLNEGAALLLNLMQSSQEDVQERSATGLATFVVVD 420

Query: 411 DENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470
           DENASIDCGRAEAVMKDGGIRLLL+LAKSWREGLQSEAAKAIANLSVNA +AK+VAEEGG
Sbjct: 421 DENASIDCGRAEAVMKDGGIRLLLELAKSWREGLQSEAAKAIANLSVNANIAKSVAEEGG 480

Query: 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530
           I ILA LA+SMNRLVAEEAAGGLWNLSVGEEHK AIA AGGVKALVDLIF+W +G DGVL
Sbjct: 481 IKILAGLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVL 540

Query: 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590
           ERAAGALANLAADDKCSMEVA AGGVHALVMLAR+CK+EGVQEQAARALANLAAHGDSN+
Sbjct: 541 ERAAGALANLAADDKCSMEVAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNN 600

Query: 591 NNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLA 650
           NN+AVGQEAGALEALVQLT+SPHEGVRQEAAGALWNLSFDD+NRE+I+ AGGVEALV LA
Sbjct: 601 NNAAVGQEAGALEALVQLTKSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALA 660

Query: 651 QSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALW 710
           QSCSNAS GLQERAAGALWGLSVSEAN +AIGREGGV PLIALARSEAEDVHETAAGALW
Sbjct: 661 QSCSNASTGLQERAAGALWGLSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALW 720

Query: 711 NLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFAL-IGT-S 768
           NLAFNPGNALRIVEEGGVPALVHLCSSS SKMARFMAALALAYMFDGRMDE+AL IGT S
Sbjct: 721 NLAFNPGNALRIVEEGGVPALVHLCSSSVSKMARFMAALALAYMFDGRMDEYALMIGTSS 780

Query: 769 TESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGH 828
           +ESTSK +SLDGAR MALKHIEAFVL+F DP  F +   SS P  L QVTERARIQEAGH
Sbjct: 781 SESTSKNISLDGARNMALKHIEAFVLSFIDPHIFESPVVSSTPTMLAQVTERARIQEAGH 840

Query: 829 LRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFTIPGGRHAMHHASLMQGAGAARVLRAA 888
           LRCSGAEIGRF+TMLRNP S LK+CAAFALLQFTIPGGRHAMHH SLMQ  G +R LR+A
Sbjct: 841 LRCSGAEIGRFVTMLRNPDSTLKACAAFALLQFTIPGGRHAMHHVSLMQNGGESRFLRSA 900

Query: 889 AAAAAAPIEAKIFARIVLRNLEHHH 913
           AA+A  P EAKIF +I+LRNLEHH 
Sbjct: 901 AASAKTPREAKIFTKILLRNLEHHQ 925
Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M224|ADLO2_ARATH Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1 Back     alignment and function description
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 Back     alignment and function description
>sp|Q4I1B1|VAC8_GIBZE Vacuolar protein 8 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=VAC8 PE=3 SV=4 Back     alignment and function description
>sp|Q54I71|AARA_DICDI Protein aardvark OS=Dictyostelium discoideum GN=aarA PE=2 SV=1 Back     alignment and function description
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 Back     alignment and function description
>sp|Q6BTZ4|VAC8_DEBHA Vacuolar protein 8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=VAC8 PE=3 SV=4 Back     alignment and function description
>sp|Q59MN0|VAC8_CANAL Vacuolar protein 8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VAC8 PE=3 SV=3 Back     alignment and function description
>sp|Q5EFZ4|VAC8_PICPA Vacuolar protein 8 OS=Komagataella pastoris GN=VAC8 PE=3 SV=3 Back     alignment and function description
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query919
255541074920 ubiquitin-protein ligase, putative [Rici 0.985 0.984 0.889 0.0
224137174918 predicted protein [Populus trichocarpa] 0.998 1.0 0.866 0.0
224063613918 predicted protein [Populus trichocarpa] 0.998 1.0 0.867 0.0
356568604921 PREDICTED: protein ARABIDILLO 1-like [Gl 0.993 0.991 0.837 0.0
225453418927 PREDICTED: protein ARABIDILLO 1-like [Vi 0.998 0.990 0.830 0.0
18406656930 protein ARABIDILLO 1 [Arabidopsis thalia 0.993 0.981 0.791 0.0
449431988918 PREDICTED: protein ARABIDILLO 1-like [Cu 0.979 0.980 0.832 0.0
297828211929 armadillo/beta-catenin repeat family pro 0.993 0.982 0.796 0.0
356531812921 PREDICTED: protein ARABIDILLO 1-like [Gl 0.979 0.977 0.834 0.0
297820892928 armadillo/beta-catenin repeat family pro 0.993 0.983 0.766 0.0
>gi|255541074|ref|XP_002511601.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223548781|gb|EEF50270.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1532 bits (3966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 809/909 (88%), Positives = 854/909 (93%), Gaps = 3/909 (0%)

Query: 13  GKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRA 72
           GKEKV L S+PE+EDEV  S+ NE VDWT LPDDTVIQL SCLNYRDRASLSSTCRTWRA
Sbjct: 13  GKEKVALSSFPEIEDEVSCSDSNEAVDWTGLPDDTVIQLFSCLNYRDRASLSSTCRTWRA 72

Query: 73  LGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSG 132
           LG SPCLW+SLDLR+HKCD A A SLA RC+ LQKLRFRGAESAD+IIHLQA+NLRE+SG
Sbjct: 73  LGISPCLWTSLDLRSHKCDAATATSLAPRCIQLQKLRFRGAESADAIIHLQAKNLREISG 132

Query: 133 DYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDI 192
           DYCRKITDA+LSVIVARHE LESLQLGPDFCERI+SDA+KAIA CCPKLKKLR+SGIRD+
Sbjct: 133 DYCRKITDASLSVIVARHELLESLQLGPDFCERISSDAIKAIAFCCPKLKKLRVSGIRDV 192

Query: 193 CGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252
             DAINALAK CPNL DIGFLDCLNVDEVALGNV+SVRFLSVAGTSNMKWGV+S +WHKL
Sbjct: 193 SADAINALAKHCPNLIDIGFLDCLNVDEVALGNVVSVRFLSVAGTSNMKWGVISHLWHKL 252

Query: 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFT 312
           PKL+GLDVSRTD+GP  +SRLL+SS SLKVLCALNC VLEE+   SA + KGKLL+ALFT
Sbjct: 253 PKLIGLDVSRTDIGPTAVSRLLSSSHSLKVLCALNCSVLEEDATFSANRYKGKLLIALFT 312

Query: 313 DIFKALASLFAETT--KNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQ 370
           DIFK L+SLFA+TT  K  KNVFLDWR+SK +DKNL++IMTWLEWILSH LL TAESNPQ
Sbjct: 313 DIFKGLSSLFADTTNTKKGKNVFLDWRSSKTQDKNLDDIMTWLEWILSHTLLPTAESNPQ 372

Query: 371 GLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGI 430
           GLDDFWLKQGA +LLSLMQS+QEDVQERAATGLATFVVI+DENASIDCGRAEAVM+DGGI
Sbjct: 373 GLDDFWLKQGAAILLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGI 432

Query: 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAA 490
           RLLLDLAKSWREGLQSEAAKAIANLSVNA VAKAVAEEGGINILA LARSMNRLVAEEAA
Sbjct: 433 RLLLDLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGINILAGLARSMNRLVAEEAA 492

Query: 491 GGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550
           GGLWNLSVGEEHKGAIA+AGG+KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV
Sbjct: 493 GGLWNLSVGEEHKGAIAEAGGIKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 552

Query: 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR 610
           ALAGGVHALVMLAR+CKFEGVQEQAARALANLAAHGDSN+NN+AVGQEAGALEALVQLTR
Sbjct: 553 ALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNTNNAAVGQEAGALEALVQLTR 612

Query: 611 SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWG 670
           SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALV LAQSCSNASPGLQERAAGALWG
Sbjct: 613 SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALAQSCSNASPGLQERAAGALWG 672

Query: 671 LSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA 730
           LSVSEAN IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA
Sbjct: 673 LSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA 732

Query: 731 LVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIE 790
           LVHLCSSS SKMARFMAALALAYMFDGRMDEFALIGTSTESTSK VSLDGARRMALKHIE
Sbjct: 733 LVHLCSSSVSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKSVSLDGARRMALKHIE 792

Query: 791 AFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVL 850
           AFVLTFSD Q FA AAASSAPAAL QVTERARIQEAGHLRCSGAEIGRF+TMLRN SS+L
Sbjct: 793 AFVLTFSDQQTFAVAAASSAPAALAQVTERARIQEAGHLRCSGAEIGRFVTMLRNSSSIL 852

Query: 851 KSCAAFALLQFTIPGGRHAMHHASLMQGAGAARVLRAAAAAAAAPIEAKIFARIVLRNLE 910
           K+CAAFALLQFTIPGGRHAMHHASLMQ AGAARV+RAAAAAA AP+EAKIFARIVLRNLE
Sbjct: 853 KACAAFALLQFTIPGGRHAMHHASLMQNAGAARVVRAAAAAATAPLEAKIFARIVLRNLE 912

Query: 911 HHHHVELSI 919
            HH +E SI
Sbjct: 913 -HHQIEPSI 920

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224137174|ref|XP_002327055.1| predicted protein [Populus trichocarpa] gi|222835370|gb|EEE73805.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224063613|ref|XP_002301228.1| predicted protein [Populus trichocarpa] gi|222842954|gb|EEE80501.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356568604|ref|XP_003552500.1| PREDICTED: protein ARABIDILLO 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225453418|ref|XP_002274749.1| PREDICTED: protein ARABIDILLO 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|18406656|ref|NP_566029.1| protein ARABIDILLO 1 [Arabidopsis thaliana] gi|75219086|sp|O22161.1|ADLO1_ARATH RecName: Full=Protein ARABIDILLO 1; AltName: Full=F-box only protein 5 gi|2344894|gb|AAC31834.1| F-box protein family, AtFBX5 [Arabidopsis thaliana] gi|330255388|gb|AEC10482.1| protein ARABIDILLO 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449431988|ref|XP_004133782.1| PREDICTED: protein ARABIDILLO 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297828211|ref|XP_002881988.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297327827|gb|EFH58247.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356531812|ref|XP_003534470.1| PREDICTED: protein ARABIDILLO 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297820892|ref|XP_002878329.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324167|gb|EFH54588.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query919
TAIR|locus:2055033930 ARABIDILLO-1 "AT2G44900" [Arab 0.979 0.967 0.733 0.0
TAIR|locus:2103351928 ARABIDILLO-2 "AT3G60350" [Arab 0.970 0.961 0.701 0.0
TAIR|locus:2075140660 PUB13 "plant U-box 13" [Arabid 0.190 0.265 0.3 3.7e-11
RGD|621722276 Fbxl20 "F-box and leucine-rich 0.206 0.688 0.281 4.6e-11
TAIR|locus:2045334829 PUB4 "plant U-box 4" [Arabidop 0.213 0.236 0.299 1.8e-10
MGI|MGI:1919444436 Fbxl20 "F-box and leucine-rich 0.206 0.435 0.281 2.7e-10
MGI|MGI:2443416790 Fbxl13 "F-box and leucine-rich 0.124 0.144 0.260 3.4e-10
UNIPROTKB|A6H779423 FBXL2 "F-box/LRR-repeat protei 0.292 0.635 0.265 4.2e-10
UNIPROTKB|Q58DG6436 FBXL20 "F-box/LRR-repeat prote 0.206 0.435 0.276 5.7e-10
UNIPROTKB|Q96IG2436 FBXL20 "F-box/LRR-repeat prote 0.206 0.435 0.276 5.7e-10
TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3371 (1191.7 bits), Expect = 0., P = 0.
 Identities = 668/911 (73%), Positives = 739/911 (81%)

Query:    19 LPSYPEV----EDEVIGSEK-NEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRAL 73
             LPSYPE     E++++  E  +  VDW SLP DTV+QL +CLNYRDRASL+STC+TWR L
Sbjct:    21 LPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFTCLNYRDRASLASTCKTWRCL 80

Query:    74 GASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGD 133
             GAS CLW+SLDLR HK D +MAASLASRC+NL  LRFRG ESADS+IHL+ARNL E+SGD
Sbjct:    81 GASSCLWTSLDLRPHKFDASMAASLASRCVNLHYLRFRGVESADSLIHLKARNLIEVSGD 140

Query:   134 YCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDIC 193
             YC+KITDATLS+IVARHEALESLQLGPDFCERITSDA+KA+A CCPKLKKLRLSGIRD+ 
Sbjct:   141 YCKKITDATLSMIVARHEALESLQLGPDFCERITSDAIKAVAFCCPKLKKLRLSGIRDVT 200

Query:   194 GDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253
              +AI ALAK CP L D+GFLDCLN+DE ALG V+SVR+LSVAGTSN+KW + S  W KLP
Sbjct:   201 SEAIEALAKHCPQLNDLGFLDCLNIDEEALGKVVSVRYLSVAGTSNIKWSIASNNWDKLP 260

Query:   254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN-ISAVKSKGKLLLALFT 312
             KL GLDVSRTD+GP  +SR LTSS+SLKVLCALNC VLEE+ + IS  + KGK+LLALFT
Sbjct:   261 KLTGLDVSRTDIGPTAVSRFLTSSQSLKVLCALNCHVLEEDESLISYNRFKGKVLLALFT 320

Query:   313 DIFKALASLFAETTKNEKNVFLDWRN--SKNKDKNLNEIMTWLEWILSHILLRTAESNPQ 370
             ++F  LAS+FA+ TK  K++F  WR      KDK +N+ + W+EWI+SH LLRTAE NP+
Sbjct:   321 NVFDGLASIFADNTKKPKDIFAYWRELMKTTKDKTINDFIHWIEWIISHTLLRTAECNPE 380

Query:   371 GLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGI 430
             GLDDFWL +GA LLL+LMQS+QEDVQER+ATGLATFVV++DENASIDCGRAEAVMKDGGI
Sbjct:   381 GLDDFWLNEGAALLLNLMQSSQEDVQERSATGLATFVVVDDENASIDCGRAEAVMKDGGI 440

Query:   431 RLLLDLAKSWREGLQSEAAKAIANLSVNXXXXXXXXXXXXINILAVLARSMNRLVAEEAA 490
             RLLL+LAKSWREGLQSEAAKAIANLSVN            I ILA LA+SMNRLVAEEAA
Sbjct:   441 RLLLELAKSWREGLQSEAAKAIANLSVNANIAKSVAEEGGIKILAGLAKSMNRLVAEEAA 500

Query:   491 GGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEV 550
             GGLWNLSVGEEHK AIA AGGVKALVDLIF+W +G DGVLER          DDKCSMEV
Sbjct:   501 GGLWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVLERAAGALANLAADDKCSMEV 560

Query:   551 ALAGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTR 610
             A AGGVHALVMLAR+CK+EGVQEQ          HGDSN+NN+AVGQEAGALEALVQLT+
Sbjct:   561 AKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQLTK 620

Query:   611 SPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWG 670
             SPHEGVRQEAAGALWNLSFDD+NR                QSCSNAS GLQERAAGALWG
Sbjct:   621 SPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALAQSCSNASTGLQERAAGALWG 680

Query:   671 LSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA 730
             LSVSEAN +AIGREGGV PLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA
Sbjct:   681 LSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA 740

Query:   731 LVHLCSSSGSKMARFMAALALAYMFDGRMDEFAL-IGTST-ESTSKCVSLDGARRMALKH 788
             LVHLCSSS SKMARFMAALALAYMFDGRMDE+AL IGTS+ ESTSK +SLDGAR MALKH
Sbjct:   741 LVHLCSSSVSKMARFMAALALAYMFDGRMDEYALMIGTSSSESTSKNISLDGARNMALKH 800

Query:   789 IEAFVLTFSDPQXXXXXXXXXXXXXLTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSS 848
             IEAFVL+F DP              L QVTERARIQEAGHLRCSGAEIGRF+TMLRNP S
Sbjct:   801 IEAFVLSFIDPHIFESPVVSSTPTMLAQVTERARIQEAGHLRCSGAEIGRFVTMLRNPDS 860

Query:   849 VLKSCAAFALLQFTIPGGRHAMHHASLMQXXXXXXXXXXXXXXXXXPIEAKIFARIVLRN 908
              LK+CAAFALLQFTIPGGRHAMHH SLMQ                 P EAKIF +I+LRN
Sbjct:   861 TLKACAAFALLQFTIPGGRHAMHHVSLMQNGGESRFLRSAAASAKTPREAKIFTKILLRN 920

Query:   909 LEHHHHVELSI 919
             LEHH   E SI
Sbjct:   921 LEHHQ-AESSI 930
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0048527 "lateral root development" evidence=IGI;IMP
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|621722 Fbxl20 "F-box and leucine-rich repeat protein 20" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:2443416 Fbxl13 "F-box and leucine-rich repeat protein 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M224ADLO2_ARATHNo assigned EC number0.76580.99340.9838nono
O22161ADLO1_ARATHNo assigned EC number0.79130.99340.9817yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query919
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 5e-16
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 3e-15
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 5e-12
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-11
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 4e-11
pfam1293747 pfam12937, F-box-like, F-box-like 2e-09
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 5e-09
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 8e-09
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 6e-07
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 2e-06
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 3e-06
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 5e-06
pfam0064648 pfam00646, F-box, F-box domain 6e-06
smart0018541 smart00185, ARM, Armadillo/beta-catenin-like repea 7e-06
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 4e-05
COG5064526 COG5064, SRP1, Karyopherin (importin) alpha [Intra 9e-05
smart0018541 smart00185, ARM, Armadillo/beta-catenin-like repea 2e-04
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 8e-04
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 0.002
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 0.002
PLN032002102 PLN03200, PLN03200, cellulose synthase-interactive 0.003
COG5064526 COG5064, SRP1, Karyopherin (importin) alpha [Intra 0.004
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information 
 Score = 74.7 bits (184), Expect = 5e-16
 Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 5/118 (4%)

Query: 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSF-DDRNREAIAAAGGVEALVVLAQSCSNA 656
           +AG L ALV L  S  E V++EAA AL NLS  ++ N +A+  AGG+ ALV L +S    
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-- 62

Query: 657 SPGLQERAAGALWGLSVSEANCIAIGRE-GGVAPLIALARSEAEDVHETAAGALWNLA 713
              + + A  AL  L+    +   I  E GGV  L+ L  S  ED+ + A GAL NLA
Sbjct: 63  -EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 919
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.98
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.97
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.97
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.96
KOG4341483 consensus F-box protein containing LRR [General fu 99.95
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.94
PF05804708 KAP: Kinesin-associated protein (KAP) 99.93
PF05804708 KAP: Kinesin-associated protein (KAP) 99.91
KOG1048717 consensus Neural adherens junction protein Plakoph 99.88
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.85
KOG1048717 consensus Neural adherens junction protein Plakoph 99.83
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.82
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.81
KOG4341483 consensus F-box protein containing LRR [General fu 99.8
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.75
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.73
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.67
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.59
PRK09687280 putative lyase; Provisional 99.57
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.57
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 99.57
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.55
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.55
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.55
PRK09687280 putative lyase; Provisional 99.55
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.54
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.52
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.42
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.4
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 99.37
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.34
KOG1293678 consensus Proteins containing armadillo/beta-caten 99.32
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.3
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.3
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 99.26
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.18
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.15
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.14
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.12
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 99.09
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 99.09
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.07
KOG1293678 consensus Proteins containing armadillo/beta-caten 99.05
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.01
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 99.01
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.0
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.93
KOG3678 832 consensus SARM protein (with sterile alpha and arm 98.89
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.87
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.85
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 98.84
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.83
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 98.82
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.81
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.8
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.72
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.72
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.71
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.7
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.7
KOG3678 832 consensus SARM protein (with sterile alpha and arm 98.7
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.68
TIGR02270410 conserved hypothetical protein. Members are found 98.66
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 98.64
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 98.64
PTZ00429 746 beta-adaptin; Provisional 98.62
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.61
PLN00113968 leucine-rich repeat receptor-like protein kinase; 98.59
PTZ00429 746 beta-adaptin; Provisional 98.58
TIGR02270410 conserved hypothetical protein. Members are found 98.58
PF05536543 Neurochondrin: Neurochondrin 98.55
PLN00113968 leucine-rich repeat receptor-like protein kinase; 98.53
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 98.51
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.45
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.43
PLN032101153 Resistant to P. syringae 6; Provisional 98.42
KOG4646173 consensus Uncharacterized conserved protein, conta 98.35
KOG4646173 consensus Uncharacterized conserved protein, conta 98.32
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.31
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.28
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 98.27
KOG1242569 consensus Protein containing adaptin N-terminal re 98.25
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.25
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.25
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.23
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.23
KOG2734536 consensus Uncharacterized conserved protein [Funct 98.2
KOG4194873 consensus Membrane glycoprotein LIG-1 [Signal tran 98.17
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 98.17
PLN032101153 Resistant to P. syringae 6; Provisional 98.14
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.14
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.11
KOG0212 675 consensus Uncharacterized conserved protein [Funct 98.1
KOG2734536 consensus Uncharacterized conserved protein [Funct 98.05
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.0
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 97.94
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.9
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 97.9
KOG2982418 consensus Uncharacterized conserved protein [Funct 97.89
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 97.89
KOG4194873 consensus Membrane glycoprotein LIG-1 [Signal tran 97.88
COG5369743 Uncharacterized conserved protein [Function unknow 97.87
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 97.84
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.83
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.82
KOG1242569 consensus Protein containing adaptin N-terminal re 97.81
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.81
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.8
KOG06181081 consensus Serine/threonine phosphatase 2C containi 97.79
PF05536543 Neurochondrin: Neurochondrin 97.74
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 97.71
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.67
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 97.66
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.66
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.65
KOG3864221 consensus Uncharacterized conserved protein [Funct 97.6
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.59
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 97.58
COG5369743 Uncharacterized conserved protein [Function unknow 97.57
KOG18241233 consensus TATA-binding protein-interacting protein 97.57
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.56
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.55
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.52
KOG1259490 consensus Nischarin, modulator of integrin alpha5 97.51
KOG0567289 consensus HEAT repeat-containing protein [General 97.45
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.43
KOG3864221 consensus Uncharacterized conserved protein [Funct 97.43
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.42
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.42
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 97.4
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.38
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 97.37
KOG0567289 consensus HEAT repeat-containing protein [General 97.36
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 97.35
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.35
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 97.34
PRK15370754 E3 ubiquitin-protein ligase SlrP; Provisional 97.3
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.3
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.28
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.27
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.23
PRK14707 2710 hypothetical protein; Provisional 97.22
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 97.21
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.19
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.19
KOG2982418 consensus Uncharacterized conserved protein [Funct 97.15
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.11
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.1
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 97.08
KOG06181081 consensus Serine/threonine phosphatase 2C containi 96.96
PRK14707 2710 hypothetical protein; Provisional 96.96
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 96.88
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.84
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.83
KOG2123388 consensus Uncharacterized conserved protein [Funct 96.82
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.73
PRK15387788 E3 ubiquitin-protein ligase SspH2; Provisional 96.72
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.68
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 96.66
PRK15387788 E3 ubiquitin-protein ligase SspH2; Provisional 96.61
KOG3036293 consensus Protein involved in cell differentiation 96.6
KOG4308478 consensus LRR-containing protein [Function unknown 96.59
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.57
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 96.57
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.56
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 96.51
PRK15370754 E3 ubiquitin-protein ligase SlrP; Provisional 96.49
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.41
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 96.4
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 96.36
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.35
KOG2997366 consensus F-box protein FBX9 [General function pre 96.34
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.3
PRK15386426 type III secretion protein GogB; Provisional 96.29
KOG4535728 consensus HEAT and armadillo repeat-containing pro 96.28
PF07814361 WAPL: Wings apart-like protein regulation of heter 96.27
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.16
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 96.16
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 96.15
KOG4308478 consensus LRR-containing protein [Function unknown 96.14
PF11841160 DUF3361: Domain of unknown function (DUF3361) 96.14
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.09
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.09
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 96.03
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 95.97
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 95.94
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.9
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 95.87
COG5096 757 Vesicle coat complex, various subunits [Intracellu 95.83
KOG0281499 consensus Beta-TrCP (transducin repeats containing 95.76
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 95.72
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 95.72
KOG2123388 consensus Uncharacterized conserved protein [Funct 95.68
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 95.68
KOG2062 929 consensus 26S proteasome regulatory complex, subun 95.67
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 95.61
PF11841160 DUF3361: Domain of unknown function (DUF3361) 95.54
PF05004309 IFRD: Interferon-related developmental regulator ( 95.54
KOG2062 929 consensus 26S proteasome regulatory complex, subun 95.49
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 95.44
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 95.38
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 95.36
KOG1259490 consensus Nischarin, modulator of integrin alpha5 95.32
KOG4535728 consensus HEAT and armadillo repeat-containing pro 95.29
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 95.28
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 95.28
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 95.2
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 95.16
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 95.1
KOG0472565 consensus Leucine-rich repeat protein [Function un 95.03
COG5096 757 Vesicle coat complex, various subunits [Intracellu 94.85
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.77
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 94.76
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 94.7
KOG3036293 consensus Protein involved in cell differentiation 94.68
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 94.64
PLN03150623 hypothetical protein; Provisional 94.63
PF08045257 CDC14: Cell division control protein 14, SIN compo 94.57
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 94.56
KOG4237498 consensus Extracellular matrix protein slit, conta 94.44
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 94.43
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 94.4
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 94.26
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.01
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 94.0
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 93.94
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 93.93
PF05004309 IFRD: Interferon-related developmental regulator ( 93.6
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 93.57
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 93.52
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 93.49
KOG0617264 consensus Ras suppressor protein (contains leucine 93.43
KOG4653982 consensus Uncharacterized conserved protein [Funct 93.25
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 93.11
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 92.97
PRK15386426 type III secretion protein GogB; Provisional 92.94
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 92.9
PF11701157 UNC45-central: Myosin-binding striated muscle asse 92.86
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 92.8
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 92.72
PF08045257 CDC14: Cell division control protein 14, SIN compo 92.26
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 92.16
PLN03150623 hypothetical protein; Provisional 92.16
KOG1788 2799 consensus Uncharacterized conserved protein [Funct 92.09
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 92.0
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 91.87
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 91.75
PF11701157 UNC45-central: Myosin-binding striated muscle asse 91.75
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 91.54
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 91.49
KOG2025 892 consensus Chromosome condensation complex Condensi 91.39
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 91.28
PF07814361 WAPL: Wings apart-like protein regulation of heter 91.22
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 91.06
smart00638574 LPD_N Lipoprotein N-terminal Domain. 90.88
KOG22741005 consensus Predicted importin 9 [Intracellular traf 90.78
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 90.77
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 90.44
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 90.04
KOG04141251 consensus Chromosome condensation complex Condensi 90.01
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 89.95
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 89.77
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 89.75
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 89.52
KOG2032533 consensus Uncharacterized conserved protein [Funct 89.48
KOG0617264 consensus Ras suppressor protein (contains leucine 89.39
smart0036828 LRR_RI Leucine rich repeat, ribonuclease inhibitor 89.3
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 89.19
COG5116 926 RPN2 26S proteasome regulatory complex component [ 89.03
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 88.66
COG5209315 RCD1 Uncharacterized protein involved in cell diff 88.65
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 88.15
KOG2032533 consensus Uncharacterized conserved protein [Funct 87.92
KOG2137700 consensus Protein kinase [Signal transduction mech 87.68
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 87.12
KOG12481176 consensus Uncharacterized conserved protein [Funct 87.1
KOG4653982 consensus Uncharacterized conserved protein [Funct 86.6
KOG2956516 consensus CLIP-associating protein [General functi 86.24
KOG0472565 consensus Leucine-rich repeat protein [Function un 85.81
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 85.23
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 85.22
smart00638574 LPD_N Lipoprotein N-terminal Domain. 84.85
COG5116 926 RPN2 26S proteasome regulatory complex component [ 84.69
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 83.68
PF13013109 F-box-like_2: F-box-like domain 82.33
KOG2025 892 consensus Chromosome condensation complex Condensi 82.25
PF11707330 Npa1: Ribosome 60S biogenesis N-terminal; InterPro 82.16
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 82.13
KOG1566342 consensus Conserved protein Mo25 [Function unknown 81.27
KOG2956516 consensus CLIP-associating protein [General functi 81.25
KOG1788 2799 consensus Uncharacterized conserved protein [Funct 80.69
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 80.39
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-36  Score=369.27  Aligned_cols=475  Identities=24%  Similarity=0.244  Sum_probs=369.6

Q ss_pred             CCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccC--CCCcccchhhHHHHHHcCCHHHHHHHHccC---CHH
Q 002459          369 PQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVIN--DENASIDCGRAEAVMKDGGIRLLLDLAKSW---REG  443 (919)
Q Consensus       369 ~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~---~~~  443 (919)
                      +.....+...++||.|+++|++++++.++.|+.+|.+|+...  +++      +...++..|++|.|+.+|+++   +..
T Consensus        89 e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~------~~~I~v~~GaVp~Lv~lL~~gsk~d~~  162 (2102)
T PLN03200         89 EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV------GSKIFSTEGVVPSLWDQLQPGNKQDKV  162 (2102)
T ss_pred             HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh------hhhhhhhcCChHHHHHHHhCCchhhHH
Confidence            334455556666999999999999999999999999999764  221      224466899999999999986   344


Q ss_pred             HHHHHHHHHHHhhcChHHH-HHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhc
Q 002459          444 LQSEAAKAIANLSVNAKVA-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFK  521 (919)
Q Consensus       444 ~~~~a~~~L~~l~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~  521 (919)
                      ++..++.+|.+|+..++++ ..+++.|+++.++.+|+++++.++..|+.+|.+++.+ ++.+..+++.|++|.|+++|++
T Consensus       163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s  242 (2102)
T PLN03200        163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ  242 (2102)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc
Confidence            6778899999999966554 6678999999999999999999999999999888876 6789999999999999999963


Q ss_pred             cCCCCHHHHHHHHHHHHHhhcC-CcchHHHHhcChHHHHHHHHhcCC--------chHHHHHHHHHHHHHhcCCCC----
Q 002459          522 WSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCK--------FEGVQEQAARALANLAAHGDS----  588 (919)
Q Consensus       522 ~~~~~~~~~~~a~~~L~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~--------~~~~~~~a~~~L~~L~~~~~~----  588 (919)
                        ..++.+++.|+++|.+|+.+ ++.+..+++.|+++.|+.++..++        +..++++|.++|.|++.+...    
T Consensus       243 --g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~  320 (2102)
T PLN03200        243 --GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILY  320 (2102)
T ss_pred             --CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHH
Confidence              35568999999999999986 578899999999999999998543        234688999999998873100    


Q ss_pred             -------C-----------------------C------------------------------------------cccchh
Q 002459          589 -------N-----------------------S------------------------------------------NNSAVG  596 (919)
Q Consensus       589 -------~-----------------------~------------------------------------------~~~~~~  596 (919)
                             .                       .                                          ..+..+
T Consensus       321 L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L  400 (2102)
T PLN03200        321 LGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL  400 (2102)
T ss_pred             HHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH
Confidence                   0                       0                                          000112


Q ss_pred             hccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-
Q 002459          597 QEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-  674 (919)
Q Consensus       597 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-  674 (919)
                      .+.++++.|+.++...+.++++.++++|++|+.+ .+.+..+.+.|+++.|+++|.+   +++..|+.|+++|.+++.. 
T Consensus       401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~n  477 (2102)
T PLN03200        401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEV  477 (2102)
T ss_pred             HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCC
Confidence            2345566677777777888999999999999977 6669999999999999999997   8899999999999999974 


Q ss_pred             cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHH-HHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002459          675 EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALR-IVEEGGVPALVHLCSSSGSKMARFMAALALAY  753 (919)
Q Consensus       675 ~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~-l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~  753 (919)
                      ++++..+.+.|++++|+++|.++++.+++.|+++|.|++.++++... +.+.|+++.|+++|.+++ +..|..|+++|.+
T Consensus       478 denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd-~~~q~~Aa~AL~n  556 (2102)
T PLN03200        478 DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG-PKGQEIAAKTLTK  556 (2102)
T ss_pred             HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999987665555 447899999999999885 8899999999999


Q ss_pred             hhCCC-CchhHhhccccccccceechhHHHHh------------------hHHHHHHHHHhc--CChhHHHHHHhcccch
Q 002459          754 MFDGR-MDEFALIGTSTESTSKCVSLDGARRM------------------ALKHIEAFVLTF--SDPQAFATAAASSAPA  812 (919)
Q Consensus       754 l~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~~i~~lv~~~--~~~~~~~~a~~ala~~  812 (919)
                      +..+. .+.+..+..++......+.....+.+                  ...+++.++...  .++...+.|+.+++.+
T Consensus       557 Li~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL  636 (2102)
T PLN03200        557 LVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADI  636 (2102)
T ss_pred             HHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            96433 22222222222221111111111000                  112566666654  3445555555555555


Q ss_pred             hhHHhhHhhhhhccccccccchhhHHHHHHhcCCchHHHhhHHHHHHhhc
Q 002459          813 ALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFT  862 (919)
Q Consensus       813 ~~~~~~~~~~i~~~g~~~~~~~~i~~l~~~l~~~~~~~~~~aa~al~~~~  862 (919)
                      +-++......+..+|       +|++++.+|++++...+..|||||.+++
T Consensus       637 ~a~~~d~~~avv~ag-------aIpPLV~LLss~~~~v~keAA~AL~nL~  679 (2102)
T PLN03200        637 FSSRQDLCESLATDE-------IINPCIKLLTNNTEAVATQSARALAALS  679 (2102)
T ss_pred             hcCChHHHHHHHHcC-------CHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            555555567788889       9999999999999999999999997665

>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG1788 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1788 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query919
1fs2_A272 Insights Into Scf Ubiquitin Ligases From The Struct 2e-11
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 7e-09
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 4e-07
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 1e-04
1fqv_A336 Insights Into Scf Ubiquitin Ligases From The Struct 6e-08
4db8_A252 Designed Armadillo-Repeat Protein Length = 252 6e-05
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272 Back     alignment and structure 
Iteration: 1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 38  VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD-LRAHKCDIAMAA 96
           V W SLPD+ ++ + SCL   +   +S  C+ W  L +   LW +LD  R    D++ + 
Sbjct: 7   VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSV 66
Query: 97  -------SLASRCMNLQKLRFRGAESADSIIHLQAR--NLRELSGDYCRKITDATLSVIV 147
                   + S+C  LQ L   G   +D I++  A+  NL  L+   C   ++  L  ++
Sbjct: 67  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 126
Query: 148 ARHEALESLQLG--PDFCERITSDAVKAIALCCPKLKKLRLSGIR-DICGDAINALAKLC 204
           +    L+ L L    DF E+    AV  ++     + +L LSG R ++    ++ L + C
Sbjct: 127 SSCSRLDELNLSWCFDFTEKHVQVAVAHVS---ETITQLNLSGYRKNLQKSDLSTLVRRC 183
Query: 205 PNLTDIGFLD 214
           PNL  +   D
Sbjct: 184 PNLVHLDLSD 193
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336 Back     alignment and structure
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query919
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 3e-72
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-63
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-62
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-61
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-57
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-19
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-70
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-64
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-62
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 8e-62
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-57
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 6e-32
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-70
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-61
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-61
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-60
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-55
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 5e-44
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 8e-30
3nmz_A458 APC variant protein; protein-protein complex, arma 7e-58
3nmz_A458 APC variant protein; protein-protein complex, arma 7e-42
3nmz_A458 APC variant protein; protein-protein complex, arma 2e-40
3nmz_A458 APC variant protein; protein-protein complex, arma 5e-35
3nmz_A458 APC variant protein; protein-protein complex, arma 6e-16
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-57
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-57
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 5e-37
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-36
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-49
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-46
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 6e-45
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 8e-37
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 4e-34
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-32
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 5e-49
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 4e-43
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 2e-39
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-38
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-32
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 2e-17
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 4e-47
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 5e-38
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 5e-35
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 8e-31
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 7e-24
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 2e-19
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-44
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-43
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 5e-43
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 3e-31
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-29
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-07
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 1e-42
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-40
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-37
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 7e-37
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-34
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-31
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 5e-28
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 4e-11
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-07
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 4e-39
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 4e-34
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 2e-30
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 8e-15
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 4e-14
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 5e-38
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 1e-32
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 3e-28
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 1e-15
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 5e-09
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 5e-31
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 6e-09
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 2e-29
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 9e-23
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 5e-22
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 5e-21
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 2e-19
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 2e-14
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 1e-11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 1e-25
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 3e-21
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 6e-20
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-18
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 7e-09
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 5e-23
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-17
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 2e-17
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 2e-15
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 8e-14
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 1e-21
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 6e-17
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 7e-16
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 8e-13
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 2e-10
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 8e-05
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 2e-16
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 4e-09
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 1e-06
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 6e-13
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-10
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 7e-08
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-09
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 7e-08
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 5e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-08
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 7e-04
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-07
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 7e-04
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 3e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-04
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
 Score =  250 bits (639), Expect = 3e-72
 Identities = 92/411 (22%), Positives = 148/411 (36%), Gaps = 35/411 (8%)

Query: 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438
            G   +++L+  T           L      N E+          ++  GG + L+++ +
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK-------LIILASGGPQALVNIMR 192

Query: 439 SWR-EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497
           ++  E L    ++ +  LSV +    A+ E GG+  L +     ++ + +     L NLS
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252

Query: 498 VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGV 556
             +         G +  LV L+    S    V+  AAG L+NL   + K  M V   GG+
Sbjct: 253 --DAATKQEGMEGLLGTLVQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 557 HALV-MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615
            ALV  + R+   E + E A  AL +L +            +    L  +V+L   P   
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 616 VRQEAA-GALWNLSFDDRNREAIAAAGGVEALVVLAQSCSN------------------- 655
              +A  G + NL+    N   +   G +  LV L                         
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427

Query: 656 ASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN 715
               + E   GAL  L+    N I I     +   + L  S  E++   AAG L  LA +
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487

Query: 716 PGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIG 766
              A  I  EG    L  L  S    +A + AA+      D   D    + 
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS 538
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 919
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 2e-21
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 2e-20
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 9e-16
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 2e-15
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 4e-12
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 4e-11
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 1e-09
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 3e-19
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 3e-18
d1jdha_ 529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 6e-16
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 8e-15
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 3e-12
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 6e-11
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 4e-17
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 5e-11
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 4e-09
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 7e-09
d1q1sc_ 434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 4e-07
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 4e-15
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 5e-11
d1wa5b_ 503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 7e-05
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 6e-12
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 2e-07
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 5e-06
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-08
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 5e-07
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 1e-06
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 2e-06
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 6e-06
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 0.001
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 0.002
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.003
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (237), Expect = 2e-21
 Identities = 73/401 (18%), Positives = 131/401 (32%), Gaps = 42/401 (10%)

Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
            +  + S  E  Q   A  +      ++          + V + GGI  L+DL +S  + 
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESA-------KQQVYQLGGICKLVDLLRSPNQN 59

Query: 444 LQSEAAKAIANLSVNAKVAK-AVAEEGGINILAVLARSMNRL-VAEEAAGGLWNLSVGEE 501
           +Q  AA A+ NL   +   K     + GI     L R      + ++  G LWNLS  +E
Sbjct: 60  VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119

Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDG------------VLERAAGALANLAADDK-CSM 548
            K  +           +I  +S   DG            V   A G L NL++ D     
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 549 EVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGAL------ 602
               +G + +L+   ++C      +  +        H  S   ++ V      L      
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 603 -----EALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNAS 657
                 +    +    + +       L     + +    +  +  +   + L        
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK-- 297

Query: 658 PGLQERAAGALWGLSVSEANCI------AIGREGGVAPLIALARSEAEDVHETAAGALWN 711
               E  AGAL  L+ S+             +E G+  +  L +S   DV  + A  L N
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357

Query: 712 LAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 752
           ++ +P     +      P +  L +S     +     L+ A
Sbjct: 358 MSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSA 397
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query919
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.97
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.96
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.93
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.92
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.91
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.89
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.81
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.78
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.75
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.73
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.71
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.69
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.68
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.65
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.64
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.64
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.63
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.58
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.48
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.46
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 99.45
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 99.37
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.37
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.34
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.27
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.22
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.21
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.2
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.2
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.19
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.13
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.09
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 99.09
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.04
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 99.0
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 98.98
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 98.98
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.96
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 98.92
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.92
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.89
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.84
d1p9ag_266 von Willebrand factor binding domain of glycoprote 98.81
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.78
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.69
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.67
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.67
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.61
d1p9ag_266 von Willebrand factor binding domain of glycoprote 98.59
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 98.57
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.45
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 98.44
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 98.42
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 98.4
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.37
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.37
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.14
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.11
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 97.99
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 97.89
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 97.83
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.8
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 97.79
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 97.65
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.55
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 97.47
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 97.46
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 97.44
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 97.21
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 97.1
d2ifga3156 High affinity nerve growth factor receptor, N-term 96.99
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 96.7
d2ifga3156 High affinity nerve growth factor receptor, N-term 96.55
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 95.74
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.49
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 80.42
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=289.25  Aligned_cols=459  Identities=21%  Similarity=0.203  Sum_probs=352.2

Q ss_pred             CHHHHHHHHC-HHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf             9168997301-999998520-69999999999999762025787754230469999970979999999702999899999
Q 002459          371 GLDDFWLKQG-AGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEA  448 (919)
Q Consensus       371 ~~~~~~~~~g-i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~i~~Li~~L~s~~~~~~~~a  448 (919)
                      ....+...+| ++.|+++|. .++++++..++.+|.+++.+        +..+..+.+.|+++.|+.+|++++++++..|
T Consensus        50 ~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--------~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a  121 (529)
T d1jdha_          50 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--------REGLLAIFKSGGIPALVKMLGSPVDSVLFYA  121 (529)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--------CHHHHHHHHCCCHHHHHHHHCCCCHHHHHHH
T ss_conf             78999871339999999984799999999999999999589--------1669999987989999998579798999999


Q ss_pred             HHHHHHHHC-CHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-CCHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf             999999405-9578999998094999999993089999999999997621686-63799997167999999984007899
Q 002459          449 AKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGG  526 (919)
Q Consensus       449 ~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~  526 (919)
                      +++|++++. ++..+..+.+.|+++.|+.++++++..++..++.+|.+++..+ +.+..+...|+++.|+.++..  ...
T Consensus       122 ~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~  199 (529)
T d1jdha_         122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTY  199 (529)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CCC
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH--HHH
T ss_conf             999998651320113678765881489998870576888888999988763004788888760563689999986--104


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHH
Q ss_conf             89999999999996149966599996180999999981299458999999999997428998876410210014499999
Q 002459          527 DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV  606 (919)
Q Consensus       527 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv  606 (919)
                      ..++..++.++.+++.+++++..+.+.|+++.|+.++.+.+ ..++..+++++.+++....      ......++++.|+
T Consensus       200 ~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~l~~ls~~~~------~~~~~~~~i~~Lv  272 (529)
T d1jdha_         200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAAT------KQEGMEGLLGTLV  272 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCT------TCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCCCC------CHHHHHHCCHHHH
T ss_conf             89999999987511013323304565433346999862540-1555301567775043211------0256640101445


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q ss_conf             980799988999999999961189-1009999974988999999720389998899999999997013762----14688
Q 002459          607 QLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA----NCIAI  681 (919)
Q Consensus       607 ~ll~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~~A~~~L~~l~~~~~----~~~~i  681 (919)
                      +++.+++..++..++++|++++.+ ++++..+.+.++++.++.++.. .+..+++++.|+.+|++++....    .+..+
T Consensus       273 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i  351 (529)
T d1jdha_         273 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR-AGDREDITEPAICALRHLTSRHQEAEMAQNAV  351 (529)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHH
T ss_conf             41245428899999998875012203788888875007899999984-00111378899988500220000000356667


Q ss_pred             HHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             72089599999871499-99999999999997189232889998299899999771189899999999999996379971
Q 002459          682 GREGGVAPLIALARSEA-EDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD  760 (919)
Q Consensus       682 ~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~  760 (919)
                      ...++++.|+.++..++ ..++..+++++++++.+++++..+.+.|+++.|++++.+++ ..++..++.+..........
T Consensus       352 ~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~-~~~~~~~~~~~~~~~~~~~~  430 (529)
T d1jdha_         352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEGV  430 (529)
T ss_dssp             HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHH-HHHC-----------CBTTB
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCC
T ss_conf             76456124789871531278999999987500003566666653265799999986678-89999998603467764121


Q ss_pred             ---H-HH----HHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             ---1-57----650456666640014579873698899999850--7946789887305504668866765320146433
Q 002459          761 ---E-FA----LIGTSTESTSKCVSLDGARRMALKHIEAFVLTF--SDPQAFATAAASSAPAALTQVTERARIQEAGHLR  830 (919)
Q Consensus       761 ---~-~~----~~~~~~~~~~~~v~~~~~~~~~~~~i~~lv~~~--~~~~~~~~a~~a~a~~~~~~~~~~~~i~~~g~~~  830 (919)
                         . +.    .+..+.......   ..  ....+++.+|+..+  .++..+..++.+++.+... ....+.+.+.|   
T Consensus       431 ~~~~~~~~~~~al~~la~~~~~r---~~--~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g---  501 (529)
T d1jdha_         431 RMEEIVEGCTGALHILARDVHNR---IV--IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG---  501 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTSHHHH---HH--HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHHHHHHHHTT---
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHH---HH--HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHCC---
T ss_conf             31999999999999984498889---99--99788899999986799989999999999998659-46699999888---


Q ss_pred             CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             3211367999983098057885587787751
Q 002459          831 CSGAEIGRFITMLRNPSSVLKSCAAFALLQF  861 (919)
Q Consensus       831 ~~~~~i~~l~~~l~~~~~~~r~~aa~al~~~  861 (919)
                          ++++|++++.++++.+|..|+.+|.++
T Consensus       502 ----~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         502 ----ATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             ----CHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             ----899999985799999999999999974
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure