Citrus Sinensis ID: 002471
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 918 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.802 | 0.791 | 0.749 | 0.0 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.297 | 0.178 | 0.341 | 5e-32 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.290 | 0.196 | 0.314 | 9e-29 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.314 | 0.229 | 0.298 | 1e-27 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.311 | 0.169 | 0.275 | 2e-24 | |
| O22212 | 554 | U4/U6 small nuclear ribon | no | no | 0.322 | 0.534 | 0.280 | 3e-24 | |
| D3TLL6 | 411 | Lissencephaly-1 homolog O | N/A | no | 0.301 | 0.673 | 0.255 | 2e-22 | |
| Q8BG40 | 658 | Katanin p80 WD40 repeat-c | yes | no | 0.269 | 0.375 | 0.296 | 3e-22 | |
| Q9BVA0 | 655 | Katanin p80 WD40 repeat-c | yes | no | 0.269 | 0.377 | 0.296 | 5e-22 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.272 | 0.336 | 0.277 | 6e-22 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1110 bits (2872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/758 (74%), Positives = 648/758 (85%), Gaps = 21/758 (2%)
Query: 171 RRDGAHLLNGNTNGLLGNDS--LMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQR 228
RRDG+HL NG+ NGL+GN+S +MRQNPG+ +++A++ YEE++K+P R+SLD+AAMK R
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAAMK-R 243
Query: 229 FGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEI 288
FG+N+GQLLDP+HAS +KSAAA+GQP+GQVLH T+GGMSPQVQ R+QQLPGS DIKSEI
Sbjct: 244 FGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSEI 303
Query: 289 NPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFH 348
NPVL PR A PEGSL+GIPGSNQG NNLTLKGWPLTG + LRSGLLQQQKPF+Q+ Q FH
Sbjct: 304 NPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQS-QSFH 362
Query: 349 QIQMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVG 407
Q+ MLTPQHQQ L+LAQQNL S S S+E+RR +MLLNNRSM+LGKDGL +SVGDV+ NVG
Sbjct: 363 QLNMLTPQHQQQLMLAQQNLNSQSVSEENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVG 422
Query: 408 SPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQH-------TLSNQQS 460
S L GG LLPRGDTDML+KLKMA + QQQQ QQQ PQ L+N Q
Sbjct: 423 SSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNPQP 482
Query: 461 QSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTA 520
QSSNH++HQQ+K+G GS+T+DGS+SNSFRGN+QV KNQ+GRKRKQPVSSSGPANSSGTA
Sbjct: 483 QSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSGTA 542
Query: 521 NTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDK 580
NTAGPSPSSAPSTPSTHTPGDVISMP LPHSG +SK +MMFGT+G GTLTSPSNQL
Sbjct: 543 NTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQL---- 598
Query: 581 DLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSK 640
ADMDR VEDGSLDDNVESFLS +D D RDA R MDVS+GF+F E NSVRAST+K
Sbjct: 599 -----ADMDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTK 653
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700
V CCHFSSDGK+LA+ GHDKKAVLW+TDT+K KT LEEH+++ITD+RFSPS RLATSSF
Sbjct: 654 VTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSF 713
Query: 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760
DKTVRVWDADN GYSLRTFMGHS+ V SLDFHP KDDLICSCD D EIRYWSINNGSCTR
Sbjct: 714 DKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTR 773
Query: 761 VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 820
V+KGG+ Q+RFQP +G+YLAA++ N+V++LD ETQA R SLQGH PI+SVCWDPSG+ L
Sbjct: 774 VYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFL 833
Query: 821 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880
ASVSED V+VWT+G+GSEGECVHELSCNGNKF SCVFHP YPSLLVIGCYQSLELWNMSE
Sbjct: 834 ASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSE 893
Query: 881 NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918
NKTMTL AHEGLI +LAVST TG VASASHDK VKLWK
Sbjct: 894 NKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 154/287 (53%), Gaps = 14/287 (4%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
TS V F+ DG LA+G D+ LW ++ K + H+S + V F+P LA+
Sbjct: 1200 TSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLAS 1259
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
S DKTVR+WD + L TF GH+ V S+ F+P+ ++ S GD +R W I++
Sbjct: 1260 GSSDKTVRLWDISSSK-CLHTFQGHTNWVNSVAFNPDG-SMLASGSGDQTVRLWEISSSK 1317
Query: 758 CTRVFKGGT---AQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCW 813
C F+G T + + F P G LA+ +++ V + + C + GHT + SV +
Sbjct: 1318 CLHTFQGHTSWVSSVTFSPD-GTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIF 1376
Query: 814 DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQ 871
P G +LAS S D +VR+W++ S G+C++ L + N S VF P +LL G Q
Sbjct: 1377 SPDGAILASGSGDQTVRLWSI---SSGKCLYTLQGHNNWVGSIVFSPD-GTLLASGSDDQ 1432
Query: 872 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
++ LWN+S + + TL H + ++A S++ +AS S D+ +KLW
Sbjct: 1433 TVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLW 1479
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 10/277 (3%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
FS DG+ +A+G D +W + LE H S + V FSP R+A+ S DKT++
Sbjct: 933 FSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIK 992
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG- 764
+WD + G +T GH SV S+ F P+ + D D I+ W +G+CT+ +G
Sbjct: 993 IWDTAS-GTCTQTLEGHGGSVWSVAFSPDGQRVASGSD-DKTIKIWDTASGTCTQTLEGH 1050
Query: 765 -GTAQ-MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 822
G Q + F P R + + ++ + I DA + C +L+GH + SV + P G+ +AS
Sbjct: 1051 GGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVAS 1110
Query: 823 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 881
S D ++++W SG+ C L +G HS F P + ++++W+ +
Sbjct: 1111 GSIDGTIKIWDAASGT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASG 1167
Query: 882 K-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
T TL H G + ++A S + VAS S DK +K+W
Sbjct: 1168 TCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIW 1204
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 13/302 (4%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DVSQG K ++++ T V FS+DG+ LA+G D+ +W+ T + H+
Sbjct: 796 DVSQG---KCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHT 852
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740
+ + + +SP L + S D+T+++WD ++T GH+ V S+ F P+ L C
Sbjct: 853 NSVYSIAYSPDSKILVSGSGDRTIKLWDCQTH-ICIKTLHGHTNEVCSVAFSPDGQTLAC 911
Query: 741 SCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQAC 797
D +R W+ G C + + G T + F P + + + V + D +T
Sbjct: 912 V-SLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKY 970
Query: 798 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856
SL+GHT I + + P + LAS S D SVR+W + S G+C L + + ++ V
Sbjct: 971 ISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNI---STGQCFQILLEHTDWVYAVV 1027
Query: 857 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 915
FHP + +++LWN+S + + TL+ H I +A S + +ASAS D+ V+
Sbjct: 1028 FHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVR 1087
Query: 916 LW 917
LW
Sbjct: 1088 LW 1089
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685
F +E N + VI S DG+ +A+G DK LW D +T L H +
Sbjct: 1060 FEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRT-LNGHEDAVYS 1118
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745
V FSP +A+ DKT+++W + G L+T GH +V ++ F P+ +L S D
Sbjct: 1119 VSFSPDGQTIASGGSDKTIKLWQTSD-GTLLKTITGHEQTVNNVYFSPDGKNL-ASASSD 1176
Query: 746 GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSL 801
I+ W +G G G +RF P G+ +AA +E+ V + + +L
Sbjct: 1177 HSIKLWDTTSGQLLMTLTGHSAGVITVRFSPD-GQTIAAGSEDKTVKLWHRQDGKLLKTL 1235
Query: 802 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860
GH ++S+ + P G+ LAS S D ++++W + ++G+ V L + + F
Sbjct: 1236 NGHQDWVNSLSFSPDGKTLASASADKTIKLWRI---ADGKLVKTLKGHNDSVWDVNFSSD 1292
Query: 861 YPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918
++ +++LWN + T T H G + A+ ++ +ASAS D ++LW+
Sbjct: 1293 GKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQ 1350
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 25/321 (7%)
Query: 613 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 666
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 667 ----TDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 722
T+T+ L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAV---LKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGH 338
Query: 723 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 779
+ + FHP+ + + D R W IN G+ + +G + FQ
Sbjct: 339 LDRLARVAFHPSG-KYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAA 397
Query: 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSE 838
+ +++ + D T L QGH KP+ SV + P+G LAS ED+ R+W +
Sbjct: 398 SCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDL---RM 454
Query: 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTAHEGLIAAL 896
+ ++ + + N + P L Y + +W+ + + +L HE +A+L
Sbjct: 455 RKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASL 514
Query: 897 AVSTETGYVASASHDKFVKLW 917
++ ++ +A+ SHD+ +KLW
Sbjct: 515 DITADSSCIATVSHDRTIKLW 535
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Arabidopsis thaliana (taxid: 3702) |
| >sp|D3TLL6|LIS1_GLOMM Lissencephaly-1 homolog OS=Glossina morsitans morsitans PE=2 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 141/309 (45%), Gaps = 32/309 (10%)
Query: 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 694
RAS ++VI F L+ + D +W +T + + +L+ H+S + D+ F
Sbjct: 108 RASITRVI---FHPTYSLMLSASEDAVIKIWDFETGEYERSLKGHTSSVQDIAFDSQGKL 164
Query: 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754
LA+ S D ++++WD ++T +GH +V S+ F P D + S D I+ W +
Sbjct: 165 LASCSADLSIKLWDFQQSYDCVKTMLGHDHNVSSVAFVP-AGDYVLSASRDQTIKMWEVA 223
Query: 755 NGSCTRVFKGGTAQMRF-QPHL-GRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSV 811
G C + + G +R + H+ G A+ + ++ + I ++ C+ L+ H ++ +
Sbjct: 224 TGYCVKTYSGHREWIRMVRVHMDGNIFASCSIDHSIRIWSINSRDCKAELRAHDHTVECI 283
Query: 812 CWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 850
W P G LAS S D ++RVW VG G C+ L+ + N
Sbjct: 284 AWAPDISTTHINEAAGSDNKKGHHQGPFLASGSRDKTIRVWDVGVGL---CLFVLTGHDN 340
Query: 851 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 909
FHP L+ +++ +W++ + M TL AH+ ++ + YV S S
Sbjct: 341 WVRELTFHPGGKYLVSASDDKTIRVWDLRNKRFMKTLYAHQHFCTSVDFHKKLPYVISGS 400
Query: 910 HDKFVKLWK 918
D VK+W+
Sbjct: 401 VDNTVKVWE 409
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Glossina morsitans morsitans (taxid: 37546) |
| >sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 764
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 765 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 823
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 824 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 883 TM-TLTAHEGLIAALAVSTE 901
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Mus musculus (taxid: 10090) |
| >sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 764
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 765 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 823
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 824 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 883 TM-TLTAHEGLIAALAVSTE 901
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Homo sapiens (taxid: 9606) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 13/263 (4%)
Query: 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680
DV+ G E +++ T V FS DG LLA+G D LW + + E H+
Sbjct: 487 DVASG---DELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHT 543
Query: 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740
+ D+ FSP +A+ S D T R+W+ G GH+ V ++ F P+ ++
Sbjct: 544 HYVLDIAFSPDGSMVASGSRDGTARLWNVAT-GTEHAVLKGHTDYVYAVAFSPDG-SMVA 601
Query: 741 SCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 797
S DG IR W + G V + + F P G L +++ V + D +
Sbjct: 602 SGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPD-GSMLVHGSDSTVHLWDVASGEA 660
Query: 798 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856
+ +GHT + +V + P G LLAS S+D ++R+W V + E L + HS
Sbjct: 661 LHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTT---LEGHTEPVHSVA 717
Query: 857 FHPTYPSLLVIGCYQSLELWNMS 879
FHP +L ++ +W ++
Sbjct: 718 FHPEGTTLASASEDGTIRIWPIA 740
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 918 | ||||||
| 356507762 | 912 | PREDICTED: transcriptional corepressor L | 0.991 | 0.997 | 0.830 | 0.0 | |
| 356507764 | 903 | PREDICTED: transcriptional corepressor L | 0.981 | 0.997 | 0.821 | 0.0 | |
| 356563836 | 912 | PREDICTED: transcriptional corepressor L | 0.984 | 0.991 | 0.827 | 0.0 | |
| 225430178 | 910 | PREDICTED: transcriptional corepressor L | 0.981 | 0.990 | 0.837 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.969 | 0.945 | 0.771 | 0.0 | |
| 449522548 | 900 | PREDICTED: transcriptional corepressor L | 0.974 | 0.994 | 0.790 | 0.0 | |
| 449441950 | 900 | PREDICTED: transcriptional corepressor L | 0.974 | 0.994 | 0.789 | 0.0 | |
| 356563834 | 903 | PREDICTED: transcriptional corepressor L | 0.974 | 0.991 | 0.818 | 0.0 | |
| 449441952 | 891 | PREDICTED: transcriptional corepressor L | 0.965 | 0.994 | 0.782 | 0.0 | |
| 356552537 | 893 | PREDICTED: transcriptional corepressor L | 0.969 | 0.996 | 0.798 | 0.0 |
| >gi|356507762|ref|XP_003522633.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1405 bits (3638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 764/920 (83%), Positives = 811/920 (88%), Gaps = 10/920 (1%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQHQQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG-S 478
GDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQDK+G G S
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQDKVGGGGGS 472
Query: 479 VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHT 538
VT+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHT
Sbjct: 473 VTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHT 532
Query: 539 PGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLD 598
PGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR VEDGSLD
Sbjct: 533 PGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLD 592
Query: 599 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH 658
+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGH
Sbjct: 593 ENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGH 652
Query: 659 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718
DK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRT
Sbjct: 653 DKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRT 712
Query: 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 778
F GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRY
Sbjct: 713 FTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRY 772
Query: 779 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 838
LAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVRVWT+GSGSE
Sbjct: 773 LAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSE 832
Query: 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 898
GECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH+GLI +LAV
Sbjct: 833 GECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAV 892
Query: 899 STETGYVASASHDKFVKLWK 918
ST G VASASHDKF+KLWK
Sbjct: 893 STVNGLVASASHDKFLKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507764|ref|XP_003522634.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1378 bits (3567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 756/920 (82%), Positives = 802/920 (87%), Gaps = 19/920 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQHQQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG-S 478
GDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQDK+G G S
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQDKVGGGGGS 472
Query: 479 VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHT 538
VT+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHT
Sbjct: 473 VTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHT 532
Query: 539 PGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLD 598
PGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQL AD+DR VEDGSLD
Sbjct: 533 PGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQL---------ADVDRFVEDGSLD 583
Query: 599 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH 658
+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGH
Sbjct: 584 ENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGH 643
Query: 659 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718
DK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRT
Sbjct: 644 DKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRT 703
Query: 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 778
F GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRY
Sbjct: 704 FTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRY 763
Query: 779 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 838
LAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVRVWT+GSGSE
Sbjct: 764 LAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSE 823
Query: 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 898
GECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH+GLI +LAV
Sbjct: 824 GECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAV 883
Query: 899 STETGYVASASHDKFVKLWK 918
ST G VASASHDKF+KLWK
Sbjct: 884 STVNGLVASASHDKFLKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563836|ref|XP_003550164.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1372 bits (3551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/926 (82%), Positives = 812/926 (87%), Gaps = 22/926 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 296
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTPDIKSEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 297 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 355
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 356 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 414
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 415 HLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMG 474
PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMG 467
Query: 475 PAGS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS 532
G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPS
Sbjct: 468 GGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPS 526
Query: 533 TPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLV 592
TPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQLWDDKDLEL+AD+DR V
Sbjct: 527 TPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADVDRFV 586
Query: 593 EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL 652
EDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKL
Sbjct: 587 EDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKL 646
Query: 653 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712
LA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NP
Sbjct: 647 LASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENP 706
Query: 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 772
GYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG QMRFQ
Sbjct: 707 GYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQ 766
Query: 773 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 832
P LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSVRVWT
Sbjct: 767 PRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWT 826
Query: 833 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGL 892
+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGL
Sbjct: 827 LGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGL 886
Query: 893 IAALAVSTETGYVASASHDKFVKLWK 918
IAALAVST G VASASHDKFVKLWK
Sbjct: 887 IAALAVSTVNGLVASASHDKFVKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1370 bits (3545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/927 (83%), Positives = 820/927 (88%), Gaps = 26/927 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ QQ Q Q QQ QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQQ QQQQQQQQQ QQQQ QQQQRRDGAHLLNG
Sbjct: 121 LLQ----------RHAQQQQQQQQQQQQQQQQQQQ-----QQQQQPQQQQRRDGAHLLNG 165
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
TNGL+GND LMR NP TANA+AT+MYEE+LKLP+ RDSLDDA MKQRF EN+GQLLDPN
Sbjct: 166 TTNGLVGNDPLMRTNPATANALATKMYEERLKLPIQRDSLDDATMKQRFSENVGQLLDPN 225
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HA+ +KSAAA GQPSGQVLH +AGGMSPQVQAR+QQLPGSTPDIKSE+NPVLNPRA GPE
Sbjct: 226 HATILKSAAAAGQPSGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPE 285
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQA-PQPFHQIQMLTPQHQQ 359
GSL+GIPGSNQGGNNLTLKGWPLTGL+ LRSGLLQQ KPFIQA PQPFHQ+QML QQ
Sbjct: 286 GSLIGIPGSNQGGNNLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQ 345
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
LLLAQQ+LTSP SDESRR RMLLNNR+M+LGKDG SNS+GDV NVGSPL G +LPR
Sbjct: 346 LLLAQQSLTSP-PSDESRRLRMLLNNRNMNLGKDGPSNSIGDV-PNVGSPLQPGCAVLPR 403
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSS--------NHNLHQQD 471
GDT+ML+KLKMAQMH QQQQQQQQQQ ++ PQQ Q + NHN+HQQD
Sbjct: 404 GDTEMLMKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQD 463
Query: 472 KMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 531
KMG AGS+T+DGSMSNSFRGNDQ SKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP
Sbjct: 464 KMGGAGSITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 523
Query: 532 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRL 591
STPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+ADMDR
Sbjct: 524 STPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRF 583
Query: 592 VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK 651
VEDGSLDDNVESFLSHDDTDPRD GR MDVS+GF+F E +SVRAS SKVICCHFSSDGK
Sbjct: 584 VEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGK 643
Query: 652 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711
LLA+GGHDKKAVLW+TDTLK+KT LEEHS LITDVRFSPSMPRLATSSFDKTVRVWDAD+
Sbjct: 644 LLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADS 703
Query: 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 771
YSLRTF GHSASVMSLDFHPN+DDLICSCDGDGEIRYW+I NGSC RVFKGGTAQMRF
Sbjct: 704 TSYSLRTFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRF 763
Query: 772 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 831
QP GRYLAAAAENVVSILD ETQACR SLQGHTKPI SVCWDPSGE LASVSEDSVRVW
Sbjct: 764 QPRHGRYLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVW 823
Query: 832 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 891
T+GSG+EGECVHELSCNGNKFHSCVFHPTY SLLVIGCYQSLELWNMSENKTMTL+AH+G
Sbjct: 824 TLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDG 883
Query: 892 LIAALAVSTETGYVASASHDKFVKLWK 918
LIAALAVST +G VASASHDK VKLWK
Sbjct: 884 LIAALAVSTVSGLVASASHDKIVKLWK 910
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1362 bits (3524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/969 (77%), Positives = 801/969 (82%), Gaps = 79/969 (8%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQ QQ Q Q QQ QQQQ RD HLLNG
Sbjct: 121 LLMQ---------RHAQQQQQQQQHQQQPQSQPQQ--------PQPQQQQNRDRTHLLNG 163
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL GN P TANA+AT+MYEE+LK P RDSLDDAAMKQRFGENMGQLLDPN
Sbjct: 164 SANGLAGN-------PATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGENMGQLLDPN 216
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHGTAGGMSPQVQARSQQLPGST DIKSEINPVLNPRAAGPE
Sbjct: 217 HASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPE 276
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQH-QQ 359
GSL+GI GSNQG NNLTLKGWPLTGLE LRSGLLQQQKP++QAPQPFHQ+QMLTPQH QQ
Sbjct: 277 GSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQ 336
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQ+L SPSAS+ESRR RMLLNNR++ L KDGLSN GD++SNVGSPL GG PR
Sbjct: 337 LMLAQQSLASPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPR 396
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNP-----QQHTLSNQQSQSSNHNLHQQDKM- 473
GDTDML+KLK+AQ+ QQQQQQQ QQQ + N QQH LSNQQSQ+SNH++HQQDK+
Sbjct: 397 GDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVG 456
Query: 474 GPAGSVTLDGSMSNSFRGNDQ--------------------------------------- 494
G GSVT+DGSMSNS+RGNDQ
Sbjct: 457 GGGGSVTMDGSMSNSYRGNDQIKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSP 516
Query: 495 -----VSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALP 549
VSKNQ GRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGD +SMPALP
Sbjct: 517 IFAIVVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALP 576
Query: 550 HSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD 609
H+ ++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR V+DGSLDDNVESFLS DD
Sbjct: 577 HNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDD 636
Query: 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 669
TDPRD GR MDVS+GF+F + NSVRAS+SK+ CCHFSSDGKLLA+GGHDKKAV+W+ D+
Sbjct: 637 TDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADS 696
Query: 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729
LK K LEEHS+LITDVRFS SMPRLATSSFDKTVRVWD DNPGYSLRTF GHS SVMSL
Sbjct: 697 LKQKAILEEHSALITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSL 756
Query: 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 789
DFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRYLAAAAEN+VSI
Sbjct: 757 DFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSI 816
Query: 790 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG 849
LD ETQACR SL+GHTK IDSVCWDPSGELLASVSEDSVR+WT+ EGECVHELSCNG
Sbjct: 817 LDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTL----EGECVHELSCNG 872
Query: 850 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 909
+KFHSCVFHPT+PSLLVIGCYQSLELWNM+ENKTMTL+AH+GLI ALAVST G VASAS
Sbjct: 873 SKFHSCVFHPTFPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASAS 932
Query: 910 HDKFVKLWK 918
HDKF+KLWK
Sbjct: 933 HDKFIKLWK 941
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1361 bits (3522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/923 (79%), Positives = 802/923 (86%), Gaps = 28/923 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHNLHQQDKMGPA 476
GD TDM++K+KMAQ+ QQQQQQQ QQ Q HTLSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGA 457
Query: 477 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 536
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 537 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 595
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 596 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 655
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 656 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 775
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 757
Query: 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 835
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 758 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 817
Query: 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 895
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 818 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 877
Query: 896 LAVSTETGYVASASHDKFVKLWK 918
LAVS +G VASASHD+F+KLWK
Sbjct: 878 LAVSAASGLVASASHDRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1359 bits (3517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 729/923 (78%), Positives = 801/923 (86%), Gaps = 28/923 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHNLHQQDKMGPA 476
GD TDM++K+KMAQ+ QQQQQQQ QQ Q H LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 477 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 536
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 537 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 595
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 596 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 655
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 656 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 775
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 757
Query: 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 835
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 758 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 817
Query: 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 895
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 818 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 877
Query: 896 LAVSTETGYVASASHDKFVKLWK 918
LAVS +G VASASHD+F+KLWK
Sbjct: 878 LAVSAASGLVASASHDRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563834|ref|XP_003550163.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1346 bits (3483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/926 (81%), Positives = 803/926 (86%), Gaps = 31/926 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 296
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTPDIKSEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 297 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 355
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 356 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 414
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 415 HLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMG 474
PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMG 467
Query: 475 PAGS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS 532
G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPS
Sbjct: 468 GGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPS 526
Query: 533 TPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLV 592
TPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQL AD+DR V
Sbjct: 527 TPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQL---------ADVDRFV 577
Query: 593 EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL 652
EDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKL
Sbjct: 578 EDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKL 637
Query: 653 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712
LA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NP
Sbjct: 638 LASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENP 697
Query: 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 772
GYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG QMRFQ
Sbjct: 698 GYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQ 757
Query: 773 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 832
P LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSVRVWT
Sbjct: 758 PRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWT 817
Query: 833 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGL 892
+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGL
Sbjct: 818 LGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGL 877
Query: 893 IAALAVSTETGYVASASHDKFVKLWK 918
IAALAVST G VASASHDKFVKLWK
Sbjct: 878 IAALAVSTVNGLVASASHDKFVKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1335 bits (3454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/923 (78%), Positives = 792/923 (85%), Gaps = 37/923 (4%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHNLHQQDKMGPA 476
GD TDM++K+KMAQ+ QQQQQQQ QQ Q H LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 477 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 536
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 537 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 595
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQL ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQL---------ADMDRYVEDG 568
Query: 596 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 655
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 569 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 628
Query: 656 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 629 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 688
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 775
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 689 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 748
Query: 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 835
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 749 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 808
Query: 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 895
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 809 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 868
Query: 896 LAVSTETGYVASASHDKFVKLWK 918
LAVS +G VASASHD+F+KLWK
Sbjct: 869 LAVSAASGLVASASHDRFIKLWK 891
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552537|ref|XP_003544623.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1332 bits (3448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 735/921 (79%), Positives = 793/921 (86%), Gaps = 31/921 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKH S + I+ + + ++QQQQQQQ Q QQ Q QQQQQQQQ
Sbjct: 61 DIFIARTNEKH-----SEVAASYIETQLIKAREQQQQQQQPQPQQSQHQQQQQQQQQQQQ 115
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
QQ Q +L + QQQQQ QQQ QQ QQQQ Q PQ QQQP QQQQ RD AHLLNG
Sbjct: 116 QQHMQMQQILLQRAQQQQQQQQQQQQQQPQQQQLQQPQLQHQQQPPQQQQGRDRAHLLNG 175
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
TNGL+GN PGTANA+AT+MYEE+LKLP+ RDSL+DAAMKQR+G+ QLLDPN
Sbjct: 176 GTNGLVGN-------PGTANALATKMYEERLKLPLQRDSLEDAAMKQRYGD---QLLDPN 225
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KS+AATGQPSGQVLHG AG MS QVQARSQQLPGSTPDIKSEINPVLNPRAA PE
Sbjct: 226 HASILKSSAATGQPSGQVLHGAAGAMSSQVQARSQQLPGSTPDIKSEINPVLNPRAAAPE 285
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTPQHQQ 359
GSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQPFHQ+ MLTPQHQQ
Sbjct: 286 GSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQHQQ 345
Query: 360 -LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLP 418
L+LAQQNL SPSASD++RR RMLLNNR++ + KDGLSN VGD+VSN+GSPL AGG P
Sbjct: 346 QLMLAQQNLASPSASDDNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPLQAGGPAFP 405
Query: 419 RGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG- 477
R DTDML+KLK+AQ+ QQQ QQQQ QQHTLSNQQSQ+SNH++HQQDKMG G
Sbjct: 406 RSDTDMLMKLKLAQLQHQQQNANPQQQQL---QQHTLSNQQSQTSNHSMHQQDKMGGGGG 462
Query: 478 SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTH 537
SV +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPSTPSTH
Sbjct: 463 SVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTPSTH 521
Query: 538 TPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSL 597
TPGDV+SMPALPHSG++SKPLMMF DG+GTLTSPSNQL AD+DR VEDGSL
Sbjct: 522 TPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQL---------ADVDRFVEDGSL 572
Query: 598 DDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG 657
DDNVESFLSHDDTDPRD GR MDVS+GF+F E NSVRAST+KV+CCHFSSDGKLLA+GG
Sbjct: 573 DDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGG 632
Query: 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717
HDKKAVLW TD+LK K LEEH+ LITDVRFSPSMPRLATSS+DKTVRVWD +NPGYSLR
Sbjct: 633 HDKKAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLR 692
Query: 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 777
TF GHS+SVMSLDFHPNKDDLICSCD DGEIRYWSINNGSC RV KGGTAQMRFQP LGR
Sbjct: 693 TFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGR 752
Query: 778 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 837
YLAAAAENVVSILD ETQACR SL+GHTK I SVCWDPSGE LASVSEDSVRVWT+GSGS
Sbjct: 753 YLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGS 812
Query: 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALA 897
EGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGLIAALA
Sbjct: 813 EGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALA 872
Query: 898 VSTETGYVASASHDKFVKLWK 918
VST G VASASHDKFVKLWK
Sbjct: 873 VSTVNGLVASASHDKFVKLWK 893
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 918 | ||||||
| DICTYBASE|DDB_G0282189 | 579 | tupA "transcriptional represso | 0.394 | 0.625 | 0.293 | 1.5e-25 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.275 | 0.582 | 0.311 | 4.4e-24 | |
| TAIR|locus:2060560 | 554 | LIS "AT2G41500" [Arabidopsis t | 0.325 | 0.539 | 0.276 | 5.5e-24 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.289 | 0.195 | 0.294 | 8.3e-24 | |
| UNIPROTKB|Q8N136 | 415 | WDR69 "Outer row dynein assemb | 0.248 | 0.549 | 0.307 | 8.7e-24 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.299 | 0.823 | 0.262 | 1.4e-23 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.290 | 0.797 | 0.265 | 2.9e-23 | |
| UNIPROTKB|Q0P593 | 415 | WDR69 "Outer row dynein assemb | 0.240 | 0.532 | 0.306 | 7.7e-23 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.261 | 0.779 | 0.275 | 1.6e-22 | |
| UNIPROTKB|Q2KIG2 | 334 | WDR5 "WD repeat-containing pro | 0.261 | 0.718 | 0.275 | 1.6e-22 |
| DICTYBASE|DDB_G0282189 tupA "transcriptional repressor TUP1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 117/399 (29%), Positives = 183/399 (45%)
Query: 544 SMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVES 603
S P+L + P M G + +G S +N ++ +L + DM+ + E+ + E
Sbjct: 191 SFPSLSPLDSNRHPKEM-GNNMSGNSMSMNN---NNNNLNKKPDMEEVKEEDRRRHDTEM 246
Query: 604 FLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICC-HFSSDGKLLATGGHDKK 661
+ D G V + ++++ ++ V+CC +FS+DGK LATG + +
Sbjct: 247 SEENGKEKGTDWLVGYNPSVQTNLNIDLLHNLQHNS--VVCCVNFSNDGKYLATGCN-RS 303
Query: 662 AVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716
A ++ DT K + S I V FSP LAT + DKTV+VWD
Sbjct: 304 AQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSPDGNYLATGAEDKTVKVWDIHTKKIQ- 362
Query: 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQM 769
TF GH + SLD+ + I S GD + + W I G C K G +
Sbjct: 363 HTFYGHELDIYSLDYSSD-GRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSV 421
Query: 770 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 827
P GR +AA + +N+V + DA+T +GH + SV + P G+ LAS S D S
Sbjct: 422 AMSPD-GRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKS 480
Query: 828 VRVWTV-GSGSEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCY-QSLELWNMSENKT 883
+++W + GS S C + NG+K S F P S L+ G +S++ W+ T
Sbjct: 481 LKLWDLSGSRSRSRC--RATFNGHKDFVLSVAFSPD-GSWLISGSKDRSVQFWDPRNGTT 537
Query: 884 -MTLTAHEGLIAALAVSTET---GYVASASHDKFVKLWK 918
M L H+ + ++A+S + G A+ S D +LWK
Sbjct: 538 HMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLWK 576
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 4.4e-24, P = 4.4e-24
Identities = 87/279 (31%), Positives = 137/279 (49%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
FS DG+LLA+G +D LW + K LE HSS + V FSP+ LA+ S D T++
Sbjct: 49 FSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFSPNGQLLASGSSDTTIK 108
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 765
+W++ + T GHS V S+ F PN G++ W+ GS +G
Sbjct: 109 LWNSASDSLK-HTMEGHSDRVESVAFSPN-----------GQL--WNPAIGSLKHTIEGH 154
Query: 766 T---AQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 821
+ + F P G+ LA+ +AE + + D+ T + +L GH+ + + + P G LLA
Sbjct: 155 SDWVLSVAFSPD-GQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLA 213
Query: 822 SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMS 879
S S D+ +++W SGS H L + NK S F P LL G + ++LW+ +
Sbjct: 214 SGSNDATIKLWDPPSGS---LKHTLEGHSNKIESLAFSPN-GQLLASGSSDATIKLWDTA 269
Query: 880 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
TL H ++ ++ S ++ + S S D +KLW
Sbjct: 270 TGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308
|
|
| TAIR|locus:2060560 LIS "AT2G41500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 88/318 (27%), Positives = 144/318 (45%)
Query: 613 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 666
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 667 TDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS 725
+ + L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGHLDR 341
Query: 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAA 782
+ + FHP+ + + D R W IN G+ + +G + + FQ +
Sbjct: 342 LARVAFHPS-GKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCG 400
Query: 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGEC 841
+++ + D T L QGH KP+ SV + P+G LAS ED+ R+W +
Sbjct: 401 LDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS--- 457
Query: 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSE-NKTMTLTAHEGLIAALAVS 899
++ + + N + P L Y + +W+ + + +L HE +A+L ++
Sbjct: 458 LYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517
Query: 900 TETGYVASASHDKFVKLW 917
++ +A+ SHD+ +KLW
Sbjct: 518 ADSSCIATVSHDRTIKLW 535
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 8.3e-24, Sum P(2) = 8.3e-24
Identities = 82/278 (29%), Positives = 138/278 (49%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
FS DGK L +G +D +W T + L+ HS + + FSP LA+ S+D T+
Sbjct: 758 FSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFSPDGKLLASGSYDNTID 817
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 765
+WD+ G L+TF GH S+ S+ F P+ +L + D D I+ W + G +
Sbjct: 818 LWDSAT-GELLQTFEGHPHSIWSVAFAPDGKELASASD-DSTIKIWDLATGELQQTLDSH 875
Query: 766 TAQMR---FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 821
+ +R F P G+ LA+++ ++ + + + T + SL+G + + SV + P G+ LA
Sbjct: 876 SQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLA 934
Query: 822 SVSE-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880
S SE ++V++W +G E + L + S F P L +++LWN +
Sbjct: 935 SGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTT 991
Query: 881 NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
+ T H+ I A+A S + ++ S S D +KLW
Sbjct: 992 GELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029
|
|
| UNIPROTKB|Q8N136 WDR69 "Outer row dynein assembly protein 16 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 74/241 (30%), Positives = 114/241 (47%)
Query: 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691
++ R T++++C F+ L+ATG D A LW + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTS 230
Query: 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 750
R+ T SFD TV VWDAD G + +GH A + S F N D LI + D +
Sbjct: 231 GDRIITGSFDHTVVVWDADT-GRKVNILIGHCAEISSASF--NWDCSLILTGSMDKTCKL 287
Query: 751 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 807
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGE 347
Query: 808 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 866
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+ Y +V
Sbjct: 348 ISKISFNPQGNHLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN--YKGNIV 402
Query: 867 I 867
I
Sbjct: 403 I 403
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 77/293 (26%), Positives = 143/293 (48%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 105 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 758 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 813
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 814 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF---HPTYPSLLVIGC 869
P+G+ +LA+ ++++++W S+G+C+ +C+ N+ + C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 870 YQSLE-LWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 918
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 279 EDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 76/286 (26%), Positives = 139/286 (48%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
FS DGK LA+ DK +W K + LE H I+D+ +S + ++S DKT++
Sbjct: 54 FSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIK 113
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 765
+WD ++ G ++T GH V + F+P + +LI S D +R W +N G CT++
Sbjct: 114 IWDVES-GKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTKMISAH 171
Query: 766 TAQMRFQPHLGR----YLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGE-L 819
+ + H R ++ + + V I D T Q K + V + P+G+ +
Sbjct: 172 SDPVT-GVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFV 230
Query: 820 LASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---TYPSLLVIGCYQSL-EL 875
LA ++++R+W+ + + C+ + + N+ + C+F T +V G +L +
Sbjct: 231 LAGTLDNTLRLWSYNNNKK--CLKTYTGHKNEKY-CIFSTFSVTCGKWIVTGSEDNLIYI 287
Query: 876 WNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 918
+N+ + + TL HE ++ +A +AS + D+ VK+WK
Sbjct: 288 YNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333
|
|
| UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 7.7e-23, P = 7.7e-23
Identities = 71/232 (30%), Positives = 112/232 (48%)
Query: 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691
++ R T++++C F+ L+ATG D A LW + + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTS 230
Query: 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 750
R+ T SFD TV VW+AD G + T +GH A + S F N D LI + D +
Sbjct: 231 GNRIITGSFDHTVTVWEADT-GRKVYTLIGHCAEISSAVF--NWDCSLILTGSMDKTCKL 287
Query: 751 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 807
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGE 347
Query: 808 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+
Sbjct: 348 ISKISFNPQGNRLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN 396
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/254 (27%), Positives = 125/254 (49%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 70
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 789
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 71 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 790 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 848
D +T C +L H+ P+ +V ++ G L+ S S D + R+W SG +C+ L +
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 186
Query: 849 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 903
N S V F P +L +L+LW+ S+ K + T T H+ A + TG
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 904 YVASASHDKFVKLW 917
++ S S D V +W
Sbjct: 247 WIVSGSEDNLVYIW 260
|
|
| UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/254 (27%), Positives = 125/254 (49%)
Query: 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 96
Query: 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 789
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 97 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 790 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 848
D +T C +L H+ P+ +V ++ G L+ S S D + R+W SG +C+ L +
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 212
Query: 849 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 903
N S V F P +L +L+LW+ S+ K + T T H+ A + TG
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 272
Query: 904 YVASASHDKFVKLW 917
++ S S D V +W
Sbjct: 273 WIVSGSEDNLVYIW 286
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FUY2 | LEUNG_ARATH | No assigned EC number | 0.7493 | 0.8028 | 0.7916 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 918 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-64 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-47 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-40 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-32 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-28 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-27 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 1e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-15 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 9e-15 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-14 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 8e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 1e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-13 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-12 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 3e-12 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-12 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 5e-12 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 6e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 9e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 9e-12 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 2e-11 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 4e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 6e-11 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 8e-11 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 9e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 9e-11 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-10 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 4e-10 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 5e-10 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-09 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 2e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-08 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 1e-08 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 2e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 2e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-08 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-08 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 5e-08 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 5e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 5e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 6e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 7e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 7e-08 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 7e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 9e-08 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 1e-07 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 1e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 1e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-07 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-07 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 1e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-07 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-07 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 3e-07 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 4e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-07 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 4e-07 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 4e-07 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 5e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 5e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 5e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-07 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 5e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 6e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 7e-07 | |
| COG3264 | 835 | COG3264, COG3264, Small-conductance mechanosensiti | 7e-07 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 8e-07 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 8e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 9e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 9e-07 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-06 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 1e-06 | |
| pfam03280 | 189 | pfam03280, Lipase_chap, Proteobacterial lipase cha | 1e-06 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 2e-06 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-06 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 4e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 4e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-06 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 5e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 6e-06 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 6e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 7e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 7e-06 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 7e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 8e-06 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 9e-06 | |
| pfam14282 | 106 | pfam14282, FlxA, FlxA-like protein | 1e-05 | |
| cd00261 | 110 | cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors | 1e-05 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 1e-05 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 1e-05 | |
| pfam12118 | 261 | pfam12118, SprA-related, SprA-related family | 1e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 2e-05 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 2e-05 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 2e-05 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 2e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 2e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 2e-05 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 2e-05 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 3e-05 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 3e-05 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 3e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 3e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 3e-05 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 3e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 3e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-05 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 4e-05 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 4e-05 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 5e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 6e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 6e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 6e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 7e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 7e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 7e-05 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 7e-05 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 7e-05 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 7e-05 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 7e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 8e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 8e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 8e-05 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 9e-05 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-04 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 1e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-04 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 1e-04 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 1e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 1e-04 | |
| pfam12203 | 92 | pfam12203, HDAC4_Gln, Glutamine rich N terminal do | 1e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 1e-04 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 1e-04 | |
| pfam05914 | 379 | pfam05914, RIB43A, RIB43A | 1e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 2e-04 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 2e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 2e-04 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 2e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 2e-04 | |
| pfam10595 | 349 | pfam10595, UPF0564, Uncharacterized protein family | 2e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 3e-04 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 3e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 3e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 3e-04 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 3e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 3e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 3e-04 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 4e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-04 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 4e-04 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 4e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 4e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 4e-04 | |
| PRK10863 | 216 | PRK10863, PRK10863, anti-RNA polymerase sigma fact | 4e-04 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 5e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 5e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 5e-04 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 5e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 5e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 5e-04 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 5e-04 | |
| TIGR02223 | 298 | TIGR02223, ftsN, cell division protein FtsN | 5e-04 | |
| pfam04684 | 508 | pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorga | 5e-04 | |
| PRK10350 | 145 | PRK10350, PRK10350, hypothetical protein; Provisio | 5e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 6e-04 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 6e-04 | |
| pfam09831 | 177 | pfam09831, DUF2058, Uncharacterized protein conser | 6e-04 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 7e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 7e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 8e-04 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 8e-04 | |
| PRK11637 | 428 | PRK11637, PRK11637, AmiB activator; Provisional | 8e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 9e-04 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 9e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 0.001 | |
| cd00261 | 110 | cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors | 0.001 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.001 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 0.001 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 0.001 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.001 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 0.001 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 0.001 | |
| COG0845 | 372 | COG0845, AcrA, Membrane-fusion protein [Cell envel | 0.001 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.001 | |
| pfam11932 | 250 | pfam11932, DUF3450, Protein of unknown function (D | 0.001 | |
| PRK05687 | 246 | PRK05687, fliH, flagellar assembly protein H; Vali | 0.001 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 0.001 | |
| pfam05044 | 908 | pfam05044, Prox1, Homeobox prospero-like protein ( | 0.001 | |
| COG5624 | 505 | COG5624, TAF61, Transcription initiation factor TF | 0.001 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 0.001 | |
| cd12191 | 90 | cd12191, gal11_coact, gall11 coactivator domain | 0.001 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 0.001 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.001 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.002 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.002 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 0.002 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.002 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.002 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.002 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.002 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 0.002 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.002 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.002 | |
| pfam11068 | 131 | pfam11068, DUF2869, Protein of unknown function (D | 0.002 | |
| pfam11180 | 192 | pfam11180, DUF2968, Protein of unknown function (D | 0.002 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 0.003 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.003 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 0.003 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.003 | |
| PRK10350 | 145 | PRK10350, PRK10350, hypothetical protein; Provisio | 0.003 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 0.003 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.003 | |
| cd10163 | 90 | cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich | 0.003 | |
| pfam14362 | 297 | pfam14362, DUF4407, Domain of unknown function (DU | 0.003 | |
| PRK01294 | 336 | PRK01294, PRK01294, lipase chaperone; Provisional | 0.003 | |
| TIGR02302 | 851 | TIGR02302, aProt_lowcomp, TIGR02302 family protein | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.004 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.004 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.004 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 0.004 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.004 | |
| pfam06625 | 122 | pfam06625, DUF1151, Protein of unknown function (D | 0.004 | |
| pfam02948 | 174 | pfam02948, Amelogenin, Amelogenin | 0.004 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| TIGR03789 | 239 | TIGR03789, pdsO, proteobacterial sortase system Om | 0.004 | |
| pfam12795 | 239 | pfam12795, MscS_porin, Mechanosensitive ion channe | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 5e-64
Identities = 89/293 (30%), Positives = 147/293 (50%), Gaps = 16/293 (5%)
Query: 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693
++ T V C FS DGKLLATG D +W +T + L+ H+ + DV S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
LA+ S DKT+R+WD + G +RT GH++ V S+ F P+ ++ S D I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122
Query: 754 NNGSCTRVFKGGTAQ---MRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPID 809
G C +G T + F P G ++A++ + + + D T C +L GHT ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181
Query: 810 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 868
SV + P GE L S S D ++++W + S G+C+ L + N +S F P L+
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLAS 236
Query: 869 CY--QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918
++ +W++ + TL+ H + +LA S + +AS S D +++W
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-47
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 8/210 (3%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
+ + ++ TS V FS DG++L++ DK +W +T K T L H+ + V
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141
Query: 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746
FSP +A+SS D T+++WD G + T GH+ V S+ F P+ + L S DG
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDG 199
Query: 747 EIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQ 802
I+ W ++ G C +G + F P G LA+ +E + + D T C +L
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLS 258
Query: 803 GHTKPIDSVCWDPSGELLASVSED-SVRVW 831
GHT + S+ W P G+ LAS S D ++R+W
Sbjct: 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 2e-40
Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 18/300 (6%)
Query: 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRF-SP 690
+R + FS DG+LL +G D LW D K+ H S ++ + SP
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 691 SMPRLAT--SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748
+ SS D TV++WD PG +RT GHS SV SL F P+ L DG I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 749 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAET-QACRLSLQG 803
+ W + G G T + F P G +A+ + + + D T + R +L G
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 804 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862
H+ + S + P G LLAS S D ++R+W + S S + LS + + S F P
Sbjct: 241 HSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGK 297
Query: 863 SLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 918
L ++ LW++ K ++TL HEG +++L+ S + + S S D ++LW
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-32
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---F 771
RT GH+ V + F P+ L+ + GDG I+ W + G R KG T +R
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 772 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 830
+ +++ + + D ET C +L GHT + SV + P G +L+S S D +++V
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 831 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTA 888
W V G+C+ L + + +S F P + + +++LW++ K + TLT
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175
Query: 889 HEGLIAALAVSTETGYVASASHDKFVKLW 917
H G + ++A S + + S+S D +KLW
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (314), Expect = 2e-30
Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITD 685
+ K S + S + FS DG LLA+G D LW + S L HSS +
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 744
V FSP LA+ S D TVR+WD + S T GH V SL F P+ L+
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 745 DGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 802
DG IR W + G + +G + + F P + + + V + D T + +L
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 803 GHTKPIDSVCWDPSGELLASVSED-SVRVW 831
GHT + S+ + P G+ LAS S D ++R+W
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 8e-28
Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 26/314 (8%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEE 678
S + + K + LL+ G + +L + S L
Sbjct: 4 NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63
Query: 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDF-HPNKD 736
H IT + FSP L + S D T+++WD DN +++ G H +SV L P+ +
Sbjct: 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123
Query: 737 DLICSC-DGDGEIRYWSINN-GSCTRVFKGGTA---QMRFQPHLGRYLAAAAE--NVVSI 789
++ + DG ++ W ++ G R +G + + F P G+ LA+ + + +
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKL 182
Query: 790 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVH-ELS 846
D T +L GHT P+ S+ + P G L+AS S D ++R+W + S G+ + LS
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL---STGKLLRSTLS 239
Query: 847 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGY 904
+ + S F P L ++ LW++ + TL+ H + ++A S +
Sbjct: 240 GHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298
Query: 905 VASASHDKFVKLWK 918
+AS S D V+LW
Sbjct: 299 LASGSSDGTVRLWD 312
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 8e-27
Identities = 78/287 (27%), Positives = 115/287 (40%), Gaps = 48/287 (16%)
Query: 637 STSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPR 694
T V FS DG L+A+G D LW T K + L HS + FSP
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255
Query: 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754
LA+ S D T+R+WD + LRT GHS+SV+S+ F P+ L S DG +R W +
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLE 314
Query: 755 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 814
G L+L+GH P+ S+ +
Sbjct: 315 TGKLLSS-------------------------------------LTLKGHEGPVSSLSFS 337
Query: 815 PSGELLA-SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 872
P G LL S+D +R+W + G+ + L + S F P + +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDL---RTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 873 LELWNMSENK-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918
+ LW++S L H + +L S + +AS S D ++LW
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-16
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 89 QQQQQQQQQQQQ---------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
Q Q Q + QQ ++QQ S + Q+Q Q+ + Q QQ + Q
Sbjct: 577 QGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQGQP 636
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ--QPQQQQQRRDGAHLLNG 180
Q QQ Q QQQ QQ Q Q +QQ R + G
Sbjct: 637 GQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 8e-15
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
+ K ++R + V FS DG LLA+G D +W T + L H++ +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 687 RFSPSMPRLATSSFDKTVRVWD 708
+SP RLA+ S D T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-15
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ Q+Q Q+ +QQ QQ Q Q Q QQ QQ Q Q QQ QQ Q
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQ------------QQGQQGQGGQ 656
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQR 171
Q ++ QQ + + +Q+
Sbjct: 657 GGQGSLAER--QQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-14
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQQQQQHQQ 144
+EQ Q+ +QQ QQ Q Q Q P QQ QQ Q QQ QQ Q Q A++QQ +
Sbjct: 612 QEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRD 671
Query: 145 QHQQQQQQQQQPPQQPQQQQPQ 166
+ +Q+ + +
Sbjct: 672 ELGRQRGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 86 AREQQQQQQQQ----QQQQQQQQQQSQQPPHQQQQQQ-----QQQQQ-------QLQMQQ 129
A++ +Q QQ Q Q Q QS+ QQ + ++QQ LQ Q
Sbjct: 559 AQQLLEQLQQMMENLQVTQGGQGGQSEM---QQAMEGLGETLREQQGLSDETFRDLQEQF 615
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+QQ Q Q Q Q Q Q QQ Q QQ QQ Q G
Sbjct: 616 ---NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGG 658
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-14
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 79 IETQLIKAREQQQQQ---QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
Q + A Q Q Q QQ QQ Q P QQ Q Q QQ +
Sbjct: 215 QPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
Query: 136 A---QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q Q Q PPQQPQ QQ Q +
Sbjct: 275 QPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-13
Identities = 32/137 (23%), Positives = 44/137 (32%), Gaps = 46/137 (33%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ----------------------------- 114
++ +Q Q+ QQ Q Q S + Q
Sbjct: 509 MRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQ 568
Query: 115 -----QQQQQQQQQQLQMQQIL--LQRHAQQQQ----------QHQQQHQQQQQQQQQPP 157
Q Q Q Q +MQQ + L ++QQ Q Q Q+ +QQ QQ
Sbjct: 569 MMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQ 628
Query: 158 QQPQQQQPQQQQQRRDG 174
Q QP QQ Q+ G
Sbjct: 629 GGQGQGQPGQQGQQGQG 645
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-13
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQL-QMQQI 130
S+ A + + QQ Q QQ QPP QQQQ Q Q Q Q Q
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q Q QQ Q Q QQ+ PQ ++Q
Sbjct: 284 PHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV 325
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-13
Identities = 25/104 (24%), Positives = 28/104 (26%), Gaps = 12/104 (11%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ-- 147
Q Q Q QQPP QQ Q QQ+ QQQQ Q Q Q
Sbjct: 220 LPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP--QQQQQPPQPQAQPP 277
Query: 148 --------QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
Q Q P P QQ ++
Sbjct: 278 PQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR 321
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-13
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
EQQ QQ Q Q Q Q QQ QQ Q QQQ QQ Q Q L +R + + +Q
Sbjct: 619 RGEQQGQQGQGGQGQGQPGQQGQQG--QGQQQGQQGQGGQGGQGSLAERQQALRDELGRQ 676
Query: 146 HQQQQQQQQQPPQQPQQ 162
+ + +
Sbjct: 677 RGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-13
Identities = 28/83 (33%), Positives = 30/83 (36%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ QQ +Q Q Q P Q Q QQ Q L QQ QQ
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP 246
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQ 169
Q QQ PP PQ Q QQQ
Sbjct: 247 QFPGLSQQMPPPPPQPPQQQQQP 269
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-13
Identities = 23/88 (26%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q +Q Q QQ Q QQ LQ Q Q
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 146 HQQQQ---QQQQQPPQQPQQQQPQQQQQ 170
QQQQ Q Q PPQ P Q
Sbjct: 264 QQQQQPPQPQAQPPPQNQPTPHPGLPQG 291
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 6e-13
Identities = 25/103 (24%), Positives = 32/103 (31%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
++ +E QL + ++ Q Q QQ Q Q QQ +Q Q
Sbjct: 153 MLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPE 212
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q QQ Q Q Q PQQP Q Q
Sbjct: 213 QVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQM 255
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-12
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q QQ +Q Q Q +Q Q QQ Q Q Q Q
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPA---QPPLPPQLPQQPPPL 243
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ Q Q P QQQ++
Sbjct: 244 QQPQFPGLSQQMPPPPPQPPQQQQQ 268
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 3e-12
Identities = 38/82 (46%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
Q Q QQQ Q QQ + Q QQQ Q QQQ QM Q AQ Q QQQ Q Q
Sbjct: 203 GGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQ 262
Query: 152 QQQQ---PPQQPQQQQPQQQQQ 170
QQ Q P QQQP QQQ
Sbjct: 263 PQQMQGGQMQVPMQQQPPQQQP 284
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-12
Identities = 32/155 (20%), Positives = 46/155 (29%), Gaps = 49/155 (31%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ-------------- 133
QQ QQ Q QQQ QQ Q Q ++QQ + +L Q+ L
Sbjct: 636 PGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAARDAL 695
Query: 134 -------RHAQQ---------------------QQQHQQQHQQQQQQQQQPPQQPQQQQP 165
A++ ++ + + QQQ Q QQQ
Sbjct: 696 GRAGRAMGGAEEALGQGDLAEAVDRQGRALEALREGARALGEAMAQQQGQQQGGQGQQQG 755
Query: 166 QQQQQRRD-------GAHLLNGNTNGLLGNDSLMR 193
+Q RD G G+ + G R
Sbjct: 756 RQGGNGRDPLGRPRGGQGPDGGDRVKVPGEIDYQR 790
|
Length = 820 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 5e-12
Identities = 40/85 (47%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ QQQ QQ QQ P Q QQ QQ Q Q QQ Q Q Q QQ
Sbjct: 752 VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811
Query: 148 QQQQQQQQPPQ----QPQQQQPQQQ 168
Q Q QQP Q QPQ QQPQQ
Sbjct: 812 APQPQYQQPQQPVAPQPQYQQPQQP 836
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 6e-12
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQQQ+ ++ ++Q+++++ QQ QQ+Q +Q++ Q+++ L Q++Q +
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 147 QQQQQQQQQPPQQPQQ 162
Q +Q+Q +
Sbjct: 126 QAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-12
Identities = 22/82 (26%), Positives = 24/82 (29%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q QQ Q QQ Q Q Q Q Q L Q QQ
Sbjct: 246 PQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLL 305
Query: 149 QQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q Q+ Q + Q Q
Sbjct: 306 PLVQQPQGQQRGPQFREQLVQL 327
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-12
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP--HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+++ Q QQQQQ Q QPP +Q Q Q Q Q
Sbjct: 252 SQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q+ Q ++Q Q QQQ+ Q+
Sbjct: 312 QGQQRGPQFREQLVQLSQQQREALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 24/118 (20%), Positives = 61/118 (51%)
Query: 55 WWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ 114
W S+ I + S + A ++ + + + Q QQ ++ +QQ++ ++ +
Sbjct: 31 WGSLDETIEASGGGGGGSVIDAVMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAE 90
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + +Q +Q +++Q+ +R Q+QQ Q + ++Q Q +Q Q+ Q ++ +Q+++
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
|
Length = 387 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 4e-11
Identities = 42/109 (38%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A +QQ QQ QQ Q Q QQ QQP Q Q QQ QQ Q + QQ
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ---YQQPQQP 810
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL---NGNTNGL 185
Q Q+QQ QQ PQ Q QQP Q + H L NG++ L
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPL 859
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +QQQQQ+ ++ + Q+ +QQQ ++ QQ+Q Q+ L Q ++ +Q+ Q +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 150 QQQQQQPPQQPQQQQPQQQQ 169
+ +Q +Q Q ++ +
Sbjct: 122 EAAKQAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 6e-11
Identities = 22/84 (26%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
+Q +QQQQQ+ +++++ Q+++++QQQ ++LQ +Q Q +Q ++ + Q+Q++
Sbjct: 62 EQYNRQQQQQKSAKRAEE---QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK 118
Query: 152 QQQQPPQQPQQQQPQQQQQRRDGA 175
Q ++ +Q +Q Q ++ A
Sbjct: 119 QAEEAAKQAALKQKQAEEAAAKAA 142
|
Length = 387 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 65.0 bits (157), Expect = 8e-11
Identities = 46/103 (44%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ--QSQQPPHQQQQQQQQQQQQLQMQ---QILLQR 134
+ ++ EQQ+QQQ Q QQQQQQ Q QQ QQQQQ Q QQ QM Q Q
Sbjct: 338 QEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQA 397
Query: 135 HAQQQQQHQQQH---QQQQQQQQQPPQQPQQQQPQQQQQRRDG 174
H Q QH Q+Q Q QQQ Q QQ Q Q QQ + G
Sbjct: 398 HQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHG 440
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 9e-11
Identities = 55/219 (25%), Positives = 72/219 (32%), Gaps = 6/219 (2%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
++ + Q QQQQ Q QQQ Q Q QQ QQQ Q Q Q QQ
Sbjct: 204 GGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQ-QQQPQQQQQRRDGAHLLNGNTNGLLGND-SLMRQ 194
QQ Q Q Q QQQ QQ PQQ Q P Q QQ G G G + Q
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 195 NPGTANAMATRMYEEKLKL---PVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAAT 251
+++LK +R +Q+ G N +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 252 GQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINP 290
+ G GG+ + Q S+P ++
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQT 422
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 9e-11
Identities = 18/85 (21%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+Q +QQQQQ+ ++ ++ ++ QQQ ++ QQ+Q + ++ L++ +++ Q+Q +Q
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQER--LKQLEKERLAAQEQKKQ 119
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +Q + +Q + +
Sbjct: 120 AEEAAKQAALKQKQAEEAAAKAAAA 144
|
Length = 387 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 45/133 (33%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ--MQQI-------------- 130
RE +Q +Q Q+ Q P Q + QQ LQ M +I
Sbjct: 502 REALDDYMRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQ 561
Query: 131 LLQ---------RHAQQQQQHQQQHQQQ----------QQ----------QQQQPPQQPQ 161
LL+ + Q Q Q + QQ QQ Q+Q Q+ +
Sbjct: 562 LLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGE 621
Query: 162 QQQPQQQQQRRDG 174
QQ Q Q + G
Sbjct: 622 QQGQQGQGGQGQG 634
|
Length = 820 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 4e-10
Identities = 30/81 (37%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
QQ Q Q QQ Q Q Q Q QQ QQ Q Q Q
Sbjct: 152 QQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQ---QPPQMGQPGMPGGGGQG 208
Query: 150 QQQQQQPPQQPQQQQPQQQQQ 170
Q QQQ P QQQ PQ QQQ
Sbjct: 209 QMQQQGQPGGQQQQNPQMQQQ 229
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ+Q +Q Q +QQ Q + P+ +Q Q + QQ + Q Q
Sbjct: 83 EQRQLLEQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQ---AQQQQPPATTAQPQP 139
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQ 170
+Q P QPQ P + Q
Sbjct: 140 VTPPRQTTAPVQPQTPAPVRTQP 162
|
Length = 256 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-09
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQP------------PHQQQQQQQQQQQQLQ----MQQ 129
A + + Q Q + Q Q Q +Q+ Q Q Q QQ L +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ +Q Q +Q PQQ Q Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQP 230
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 2e-09
Identities = 36/90 (40%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y + Q A + Q QQ QQ Q Q QQ QQP Q Q QQ QQ A
Sbjct: 765 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV-----------AP 813
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q Q Q Q Q Q PQQP QPQ
Sbjct: 814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
|
Length = 1355 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+ + Q Q + Q Q P Q+ ++ + QLQ +Q Q QQ Q +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 151 Q--QQQQPPQQPQQQQPQQQQQRRDGAH 176
QQ PP+QP Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQP 216
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (142), Expect = 6e-09
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
S V+ FS DG+++++G D LW T NL+ H+S +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 699 SFDKTVRVWDADNPGYSL 716
S D T+R+WD S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ- 147
Q + Q Q Q Q+ S + Q QQ+QQ Q Q Q +L + +Q Q
Sbjct: 137 PQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGP 196
Query: 148 -QQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q QPPQ +Q QQ
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQ 225
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A Q +Q QQ + Q Q + +P Q QQ Q Q +Q L Q Q
Sbjct: 97 ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQP---VSPQVAPA 153
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q Q Q +P Q
Sbjct: 154 PQPVHSAPQPAQQAFQPAEPVAAPQ 178
|
Length = 333 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 57.7 bits (138), Expect = 2e-08
Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ-M 127
++ ++ + + Q + ++QQ QQQQQ Q QQ Q Q Q LQ M
Sbjct: 348 QRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQM 407
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
Q + LQ Q QQQ Q HQQ QQQ QQP Q Q
Sbjct: 408 QHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQ 441
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 2e-08
Identities = 26/69 (37%), Positives = 33/69 (47%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
+ QQ Q QQ + Q P QQ QQQ QQQ QQ Q AQQ Q +Q H
Sbjct: 197 HRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGH 256
Query: 147 QQQQQQQQQ 155
++ ++Q Q
Sbjct: 257 KRSREQGNQ 265
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-08
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 671 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
K L+ H+ +T V FSP LA+ S D TVRVWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 17/90 (18%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A+ ++Q+++++QQQ ++ QQ Q +Q++ +Q ++++L Q+ ++ A++ +
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQAA--EQERLKQLEKERLAAQEQ--KKQAEEAAKQAAL 129
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q+Q ++ + + + + +R A
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAA 159
|
Length = 387 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
+ + L+ H+ +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 56.1 bits (134), Expect = 5e-08
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q QQ + + QQQ+++MQ+I QR Q QHQQQ QQ+ QQQQ
Sbjct: 310 QSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQ 369
Query: 155 QPPQQPQQQQPQQQQQRRDG 174
QQ QQ QQ + +G
Sbjct: 370 MLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
AR Q Q Q Q +Q QQPP Q Q + Q Q + + Q +Q Q
Sbjct: 84 ARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQ 143
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P Q QQ Q
Sbjct: 144 QPVSPQVAPAPQPVHSAPQPAQQAFQ 169
|
Length = 333 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 5e-08
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ Q +QQ Q + ++Q P Q+QQ Q+Q+Q Q+ + QR AQQ + +Q Q
Sbjct: 123 EQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQ--QRLAQQSRTTEQSWQ 180
Query: 148 QQQQ--QQQQPPQQPQQQQPQQQQQ 170
QQ + Q QP+Q +P QQ
Sbjct: 181 QQTRTSQAAPVQAQPRQSKPASTQQ 205
|
Length = 319 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 6e-08
Identities = 21/58 (36%), Positives = 25/58 (43%)
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ QQ Q QQ +Q AQQ QQ QQ Q QQ P QQ +Q +R
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 7e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 94 QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+ + + QQ + Q P QQ Q QQ QQQ Q Q QQ
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQP------------QQQPQQQPVQPAQQPTP 242
Query: 154 QQPPQQPQQQQPQQQQQRRDG 174
Q P QQP Q + ++ R G
Sbjct: 243 QNPAQQPPQTEQGHKRSREQG 263
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 7e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + QQ Q +QQP Q QQ QQQ QQQ Q
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQP-------------QQQPVQPAQQPT 241
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
Q QQPPQ Q + ++Q
Sbjct: 242 PQNPAQQPPQTEQGHKRSREQ 262
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (134), Expect = 7e-08
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 637 STSKVICC-HFSSDGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVR 687
++S ++C F DG+ AT G +KK ++ +++ L S L
Sbjct: 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW 540
Query: 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDG 746
S ++A+S+F+ V+VWD L T M H V S+D+ L+ S DG
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598
Query: 747 EIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRL-SLQ 802
++ WSIN G T K ++F GR LA +A++ V D L ++
Sbjct: 599 SVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658
Query: 803 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 839
GH+K + V + S L++S +++++++W + G
Sbjct: 659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695
|
Length = 793 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 9e-08
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ QQ Q+Q+Q QQ +QQ+ Q +Q QQQ + Q + Q + QQ
Sbjct: 147 EQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQP 206
Query: 146 HQQQQQQQQQPPQQPQQQQ 164
+Q Q Q + QQ
Sbjct: 207 YQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 88 EQQQQQQQQQQQQ-------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
EQ Q +QQ Q +Q Q + QQQ QQQQ Q Q
Sbjct: 89 EQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQ--------PQPV 140
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q P + Q P Q
Sbjct: 141 TPPRQTTAPVQPQTPAPVRTQPAAPVTQA 169
|
Length = 256 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL + +Q Q + Q QQQ QQQQ Q + Q Q
Sbjct: 100 TQLSEVPYNEQTPQVPRSTVQIQQQA------QQQQPPATTAQPQPVTPPRQTTAPVQPQ 153
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q + P+ + ++++QR
Sbjct: 154 TPAPVRTQPAAPVTQAVEAPKVEAEKEKEQR 184
|
Length = 256 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 23/98 (23%), Positives = 32/98 (32%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
EV + A+E + + Q Q Q +Q QQ + Q Q +
Sbjct: 65 EVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQP 124
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ +Q Q +Q QQ P P Q Q
Sbjct: 125 APQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ 162
|
Length = 333 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-07
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 797 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 831
+L+GHT P+ SV + P G LLAS S+D +VRVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-07
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 831
+ +L+GHT P+ SV + P G+ LAS S+D ++++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 22/124 (17%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 50 GFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLI--KAREQQQQQQQQQQQQQQQQQQS 107
G L + + + I+ L+ A QQ + QQQ++ +++Q
Sbjct: 16 GLLI--LGSLY-----HSVKPEPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQE 68
Query: 108 QQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+Q +QQ ++ ++Q+ + + Q+ +Q+ ++ +Q +Q +Q ++ +Q + +
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQAR---QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK 125
Query: 168 QQQR 171
+Q
Sbjct: 126 AKQA 129
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 18/85 (21%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
R QQQ++ +++Q++Q++ QQ ++Q+ +Q +Q +++Q + +Q +Q
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAA--EKAAKQAEQA 110
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q +++Q+Q + +Q + + +
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAK 135
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQHQ 143
+ R + +++ +Q++Q+ Q +++ Q ++ QQQQ+L Q LQR A +++
Sbjct: 273 QQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQR-ALERRLRL 331
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGN-----DSLMRQ 194
+ + ++ Q+ Q PQ++ + QQ+ L L ++L +Q
Sbjct: 332 AKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 10/94 (10%), Positives = 59/94 (62%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E A E+++++++++++++ + +Q +++++Q++ +++LQ ++ + + +
Sbjct: 49 EERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERI 108
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q++ + + Q+++++Q++ ++ + ++ +++
Sbjct: 109 QEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 33/84 (39%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ--HQQQH 146
Q Q QQQQ Q Q P QQ Q QQ QQ Q Q QQ
Sbjct: 78 APQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQ 137
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q Q PQQ Q Q P QQ Q
Sbjct: 138 AQQPQPPPQVPQQQQYQSPPQQPQ 161
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 3e-07
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A + QQ Q QQ Q Q P QQ QQQ Q Q Q Q+ Q +Q H++
Sbjct: 200 APKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259
Query: 146 HQQQQQQ 152
+Q Q+
Sbjct: 260 REQGNQE 266
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 4e-07
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ-QLQMQQILLQRHAQQQQ 140
+L +A ++ +Q++Q+ Q ++ + Q P QQQQ+ + Q ++Q+ L +R +Q
Sbjct: 275 RLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQ 334
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ ++ Q+ QQQ Q + QQ+ +Q +QR
Sbjct: 335 RLERLSQRLQQQNPQRRIERAQQRLEQLEQR 365
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 13/102 (12%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ---------QSQQPPHQQQQQQQQQQQQLQMQQI 130
E + K RE + + QQ++ + ++++ Q + ++Q+++++ +++ + +Q
Sbjct: 175 ERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQE 234
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
L + +Q ++ +++ Q+++ +++ ++ ++Q + ++ +
Sbjct: 235 LQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQ 276
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 22/81 (27%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQHQQQQ 150
QQ Q P Q QQ + Q H Q QQ Q Q
Sbjct: 44 QQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQ 103
Query: 151 QQQQQPPQQPQQQQPQQQQQR 171
Q PQQP Q QP
Sbjct: 104 PLQPPQPQQPMQPQPPVHPIP 124
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 14/107 (13%), Positives = 52/107 (48%)
Query: 67 TNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
++ + ++ +L + +E+ + Q+Q + QQ+ Q+ +Q + + ++ Q++L
Sbjct: 59 SDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELA 118
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ L + +++++ ++ + +Q+ + + Q+ ++R
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRR 165
|
Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 86 AREQQQ--QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
RE+ + ++Q QQQ + ++ Q + + + Q +QQQ + +Q +Q QQ
Sbjct: 635 NREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEA 694
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ ++Q Q+ Q+ + QQ Q ++++R
Sbjct: 695 KALNVEEQSVQETEQEERVQQVQPRRKQR 723
|
Length = 1068 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 99 QQQQQQQQSQQPPHQQQQQ----QQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ + Q Q + +QQ ++Q ++L+ +Q Q +Q ++ + + Q+QQ+Q +
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121
Query: 155 QPPQQPQQQQPQQQQQRRDGA 175
+ +Q Q +Q QQ++Q R A
Sbjct: 122 EAEKQAQLEQKQQEEQARKAA 142
|
Length = 387 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 79 IETQLIKAREQQQQQQQQQQQQ----QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQR 134
I++Q A++ +QQ++++++Q + +Q Q+ Q ++++ + Q+
Sbjct: 67 IQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQE----------- 115
Query: 135 HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
QQ+Q + + Q Q +Q+QQ Q + Q+++ A
Sbjct: 116 --QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKA 154
|
Length = 387 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 17/81 (20%), Positives = 25/81 (30%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + Q Q QQ Q P Q QQ Q Q + QQ +
Sbjct: 115 PQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174
Query: 148 QQQQQQQQPPQQPQQQQPQQQ 168
Q + P +P+++
Sbjct: 175 AAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 12/89 (13%), Positives = 60/89 (67%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ +E+++ +++++Q+Q+ Q+ + +Q ++++ Q+++ ++ ++ +L++ A+ ++ Q+
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQE 277
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++++ ++ + ++ +QQ +++++R
Sbjct: 278 NAEKRRMKRLEHRRELEQQIEEKEERRAA 306
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 5e-07
Identities = 30/84 (35%), Positives = 57/84 (67%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
++Q +++QQQQ+Q+++ Q + QQ+ QQ + + + QQ +R+ ++QQQ Q+Q+Q
Sbjct: 38 KEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQ 97
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ+ QQ Q+P++QQ Q++ R
Sbjct: 98 ECQQRCQQQEQRPRRQQQCQRECR 121
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.7 bits (125), Expect = 6e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + Q + P H Q QQQ + +L QQ + + +QQ+Q Q HQ
Sbjct: 298 KSPMEAGGDRMPQSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQH 357
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
QQQQQQ+ QQ Q QQQ + H +NG
Sbjct: 358 QQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.7 bits (125), Expect = 7e-07
Identities = 32/81 (39%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 89 QQQQQQQQQQQQQQQQ-------QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QQQQQ Q QQ Q Q Q + QQ Q + Q+Q+Q QQ Q H Q QQQ
Sbjct: 373 QQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQ 432
Query: 142 HQQQHQQQQQQQQQPPQQPQQ 162
HQQ Q Q P P
Sbjct: 433 HQQPAQHGQMGYGIPNGYPAH 453
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----------------QQ 123
E L +E ++Q++ + ++ + Q QQ+ Q
Sbjct: 28 EAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASD 87
Query: 124 QLQMQQILLQ-----RHAQQQQQHQQ----QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ +LLQ R ++Q + + QQ P+ Q Q+ + Q RD
Sbjct: 88 DRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERD 146
|
Length = 835 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 8e-07
Identities = 31/88 (35%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ--QQQHQQ 144
REQQQ +++ ++Q +++QQQ +Q Q++ +Q QQ+ Q + + QQ ++++++
Sbjct: 28 REQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEK 87
Query: 145 QHQQQQQQQQQPPQ--QPQQQQPQQQQQ 170
+ QQQQ+Q Q+ Q Q Q+Q+P++QQQ
Sbjct: 88 EQQQQQRQYQECQQRCQQQEQRPRRQQQ 115
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
Q++K R+Q+ + Q +Q+QQ+ + ++Q+QQ +QQ+ M Q Q+Q
Sbjct: 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQH 90
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + + +Q ++++ +
Sbjct: 91 LLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.3 bits (124), Expect = 9e-07
Identities = 36/94 (38%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ---QQH 142
A Q Q QQQ + + Q Q+ Q+ +QQ+QQQ Q QQ Q H QQQ QQ
Sbjct: 316 AMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQ 375
Query: 143 QQQHQQQQQQQQ----QPPQQPQQQQPQQQQQRR 172
QQ HQ QQ Q Q Q Q QQ +
Sbjct: 376 QQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQH 409
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQ--QQQQHQQQ 145
Q+ + + Q QPP+ Q +Q QQ + Q+ R AQ Q Q
Sbjct: 74 APANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPA 133
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQR 171
+Q Q +Q Q P PQ Q
Sbjct: 134 YQPQPEQPLQQPVSPQVAPAPQPVHS 159
|
Length = 333 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 1e-06
Identities = 32/116 (27%), Positives = 39/116 (33%), Gaps = 14/116 (12%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + Q +K + + + QQQ QQQQQQQ P QQQ QQ Q QM
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 128 Q--QILLQRHAQQQQQHQQQHQ------------QQQQQQQQPPQQPQQQQPQQQQ 169
L + Q Q Q Q Q PQ PQ P
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGG 439
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 16/97 (16%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+ Q A +++Q++Q++ +QQ ++ ++ + +Q +Q++ +Q+ ++ Q
Sbjct: 55 IQQQKKPAAKKEQERQKKLEQQAEEAEKQRA---AEQARQKELEQRAAAEKAAKQAEQAA 111
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q ++Q Q ++ + +Q + + + + +++ ++ A
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEA 148
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 11/93 (11%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 82 QLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +ARE+Q + +++ Q+++ +++ + ++ +Q + ++ +Q+ + +++ H ++
Sbjct: 234 ELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRREL 293
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q ++ ++++ +++ + ++ +++ +R+
Sbjct: 294 EQQIEEKEERRAAEREEELEEGERLREEEAERQ 326
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 33/91 (36%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ---------QQQLQMQQILLQRHAQQQQQ 141
Q QQQQ Q Q Q P QQ Q QQ Q Q Q+ QQ Q
Sbjct: 83 QPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQ 142
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q QQQQ Q P Q QQ P Q Q
Sbjct: 143 PPPQVPQQQQYQSPPQQPQYQQNPPPQAQSA 173
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|217472 pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 30/114 (26%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL----------------- 131
Q +Q+ ++ +Q P ++ ++ QQ Q
Sbjct: 72 QDPSLSDEQKARRLAALIAQLPEDLREARRNAALQQELAQATAQLQAQGASPQDLRAARA 131
Query: 132 ----------LQRHAQQQQQHQQQHQQQQQQQQQ---PPQQPQQQQPQQQQQRR 172
L + Q++ QQ++ ++ Q +Q Q Q R+
Sbjct: 132 ALVGPEAAQRLAQLDQERAAWQQRYDDYLAERDQILAAGLSDADKQAQIAQLRQ 185
|
Length = 189 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 17/91 (18%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K +Q++++++Q ++ + +Q ++Q +Q ++++ + Q+ Q Q ++ AQ +Q+ QQ
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQK-QQ 134
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+ Q ++ +Q + + + + A
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKAAAEAAKLKA 165
|
Length = 387 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL++ +Q +Q+QQ Q+Q+Q Q Q+ QQ + +Q QQ R +Q
Sbjct: 134 TQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQ---TRTSQAAP 190
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQ------QPQQQQ 169
Q Q + QQP Q Q Q + QQ
Sbjct: 191 VQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
G LRT GH+ V S+ F P+ +L+ S DG +R W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-06
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
G L+T GH+ V S+ F P+ + S DG I+ W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ---QQLQMQQILLQRHAQQQQQHQQ 144
E Q Q + Q Q QQP +Q Q +Q QQ Q+ + Q QQ Q
Sbjct: 110 EAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQ 169
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q +P +P + +++
Sbjct: 170 PAEPVAAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 17/97 (17%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ-QILLQRHAQQQ 139
+ ++ Q++Q+ + ++ Q + ++ +QQQ+ + +L+ + L Q+
Sbjct: 278 HRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRL 337
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ Q+ Q Q+QQQ QQ +++ + +++
Sbjct: 338 ERLTQRLNPQIQRQQQRLQQLERRLDKALRRQLKRKR 374
|
Length = 440 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ R++++QQQ ++ QQ+Q +Q + ++++ Q+Q++ + A+Q Q+
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA------AKQAALKQK 132
Query: 145 QHQQQQQQQ 153
Q ++ +
Sbjct: 133 QAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 11/94 (11%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E + + R++++++ + Q+Q ++++ + +Q++ +++ Q++ QM +I+ + +
Sbjct: 57 EEEERERKRKEERREGRAVLQEQIEEREKR----RQEEYEERLQEREQMDEIIERIQEED 112
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + Q++ ++Q++ +++ + +++ ++++++
Sbjct: 113 EAEAQEKREKQKKLREEIDEFNEERIERKEEEKE 146
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 19/96 (19%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----QQQLQMQQILLQRHAQ 137
+L K +E+ +Q + + + ++ + QQ+Q + + + +++ Q+Q Q +Q Q +
Sbjct: 55 ELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDE 114
Query: 138 -QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++++Q++ +QQ++Q ++ + ++ +Q+ RR
Sbjct: 115 LARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRR 150
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 27/82 (32%), Positives = 30/82 (36%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
QQ QQ+ Q Q PP QQ Q QQ Q QQ Q QQ Q Q Q
Sbjct: 110 VPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQ 169
Query: 149 QQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P++ Q Q
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSY 191
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 14/97 (14%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ-----QQQQQLQMQ-QILLQRH 135
+L++ +Q+ +Q QQ + + + +Q QQQ+ ++ ++ + + L++
Sbjct: 500 ELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQL 559
Query: 136 AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++ + + + + ++ +QQ Q Q + +
Sbjct: 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596
|
Length = 1486 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 14/103 (13%), Positives = 61/103 (59%)
Query: 71 HSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
+ E A E + IKA E++++++ + ++++ + + +++++++++++ + Q
Sbjct: 19 NKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQE 78
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +++Q+ ++ Q+++Q + ++ Q++ + Q++R+
Sbjct: 79 QIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKRE 121
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 85 KAREQQQQQQQQQ-----------QQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILL 132
A QQ Q Q+ Q++Q+ + +++ + ++ +QQQ+L I L
Sbjct: 263 SAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRL 322
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+R + Q ++Q ++ Q+ P Q QQQ+ QQ ++R D A
Sbjct: 323 RRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLERRLDKA 365
|
Length = 440 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 27/76 (35%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ Q Q QQ P+QQQ QQ Q QQ H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPP-----------PYSPPQQQQGHFMPPQPQP 51
Query: 155 QPPQQPQQQQPQQQQQ 170
P Q PQQQQP Q
Sbjct: 52 YPKQSPQQQQPPQFSS 67
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 8/96 (8%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 84 IKARE--QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ ++ Q+ +++Q ++++++ Q++ + ++++ ++Q + +++Q ++ ++ +
Sbjct: 229 RRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLE 288
Query: 142 H----QQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
H +QQ +++++++ ++ ++ + +++ +
Sbjct: 289 HRRELEQQIEEKEERRAAEREEELEEGERLREEEAE 324
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 34/81 (41%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q Q QQQQSQ PP HQ Q QQ Q QQ Q+ Q Q
Sbjct: 73 LPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPP 132
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
QQ Q Q P QP Q PQQQQ
Sbjct: 133 AQQPQAQQP-QPPPQVPQQQQ 152
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 9e-06
Identities = 23/93 (24%), Positives = 56/93 (60%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ + + + + +Q+ + Q++QQQ +++ ++ ++QQQQ+Q+++ Q + Q+ QQ
Sbjct: 10 QQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQH 69
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + QQ+ +++ +Q QQQ+ Q+ Q+R
Sbjct: 70 EPRHRPTCQQRCERRYEKEQQQQQRQYQECQQR 102
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q+Q Q +Q ++ ++Q+QQQ QQQ+QM Q + + QQQQ ++ QQQ
Sbjct: 25 QKQIQSLTKQLKELSSSEDLTAEEKQKQQQLIQQQIQMLQAQIAQL--QQQQSEEAQQQQ 82
Query: 150 QQQQQQPPQQP 160
Q + P Q
Sbjct: 83 QSSIEDSPSQT 93
|
This family includes FlxA from E. coli. The expression of FlxA is regulated by the FliA sigma factor, a transcription factor specific for class 3 flagellar operons. However FlxA is not required for flagellar function or formation. Length = 106 |
| >gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 88 EQQQQQQQQQQQQQ---------QQQQQSQQPPHQQQQQQQQQQQQ--LQMQQILLQRHA 136
+QQ Q QQQ QQ QQ PP QQ + +QQ Q+ QI
Sbjct: 1 QQQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI------ 54
Query: 137 QQQQQHQ--QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q + + +Q Q QQQQ Q+ QQ Q ++ ++
Sbjct: 55 PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQA 92
|
They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans. Length = 110 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 18/128 (14%), Positives = 59/128 (46%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQ------------QQQQQQQQLQMQQILL 132
K ++Q++ Q+ +++Q+Q+++ ++ + +Q Q+ QQ + + +
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 133 -------------------------QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
++ Q+ + + + QQQ++++++ Q+ +QQ+ ++
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Query: 168 QQQRRDGA 175
++Q+ + A
Sbjct: 216 RKQKAEEA 223
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 26/122 (21%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQ-------------------------PPHQ 113
+ Q + Q Q QQQ + Q+ Q++Q Q
Sbjct: 722 VHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQ 781
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+Q +Q + Q Q Q L+ + AQ QHQQ + +Q QQ+ Q QQ R+
Sbjct: 782 LEQLKQNLENQRQQAQTLVTQTAQALAQHQQH-RPDGLDLTVTVEQIQQELAQLAQQLRE 840
Query: 174 GA 175
Sbjct: 841 NT 842
|
Length = 1047 |
| >gnl|CDD|221429 pfam12118, SprA-related, SprA-related family | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+ + AA +L K + ++ +++ ++ Q Q+QQ+QQQQ++ Q++
Sbjct: 55 KGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVR 114
Query: 129 QILLQRHAQQQQQHQQQHQ 147
+ L+ ++ + H+Q H
Sbjct: 115 E--LKARDREVRAHEQAHA 131
|
This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 13/94 (13%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q +A EQ++ +Q ++++ Q+Q+ Q + +Q +Q+Q + A+ +
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQA--EEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ + + ++ + + + ++ +
Sbjct: 149 AEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 17/96 (17%), Positives = 44/96 (45%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q K +QQ ++ QQ+Q +Q++ + + Q+Q++Q ++ Q L Q+ A++
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+ + + + ++ + +++ A
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEA 173
|
Length = 387 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 19/89 (21%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + Q ++ QQQQ+ + Q+ +++ + +Q+L+ LQ+ Q++
Sbjct: 293 QLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRI 352
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q Q+ +Q +Q+ + ++Q +++Q+
Sbjct: 353 ERAQ-QRLEQLEQRLRRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQP-PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ Q S P H Q Q QQ Q Q + Q Q QQ Q
Sbjct: 63 AQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPL-------QPPQPQQPMQ 115
Query: 148 QQQQQQQQPPQQPQQQQP 165
Q PP PQ P
Sbjct: 116 PQPPVHPIPPLPPQPPLP 133
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 21/141 (14%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 29 AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKARE 88
QA+Q K++ + +A W V ++ ++H + +L + +
Sbjct: 476 EQAYQLVRKIAGEVSRSEA--------WDVARELLRRLREQRHLAEQLQQLRMRLSELEQ 527
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ +QQQ+ ++ + ++ + + + +Q Q++ + L + ++ +++ QQ
Sbjct: 528 RLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQ 587
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
+Q Q + Q+ + P
Sbjct: 588 LEQLQAR-IQRLAARAPAWLA 607
|
Length = 1486 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 41.9 bits (100), Expect = 2e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36
+ L+ I+DYLVK K +A+AF E
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 21/85 (24%), Positives = 28/85 (32%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
AR+ Q Q Q + Q + QPP Q Q + Q A+Q Q+
Sbjct: 82 ARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEA 141
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q P Q QP +Q
Sbjct: 142 PAPQPVHSAAPQPAVQTVQPAVPEQ 166
|
Length = 324 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH-- 146
QQQ Q Q+ Q QQQ Q+ Q+ Q + L QQ ++Q + Q+
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLS 114
Query: 147 QQQQQQQQQPPQQPQQ 162
+ Q++ +
Sbjct: 115 ELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 19/94 (20%), Positives = 40/94 (42%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
KA + QQ+ +Q +++ ++ QQ + +QQ Q + ++ +
Sbjct: 2 KAARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAI 61
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
QQQ+ +Q + + ++Q Q+ Q R L
Sbjct: 62 AQQQQELEQAEKQVEQAREQWQEANQERKKLEKL 95
|
Length = 122 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
H + QQ Q Q Q QQ QQ QQQ QP QQP Q P QQ +
Sbjct: 199 HAPKPTQQPTVQNPAQQP-------TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQ 251
Query: 172 RDGAH 176
+ H
Sbjct: 252 TEQGH 256
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + QQ + +Q QQQ + SQ P Q Q +Q + Q Q LLQ A Q
Sbjct: 161 QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQ 220
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ + P+ ++ ++R
Sbjct: 221 SK---PQQAAPVTRAADAPKPTAEKKDERR 247
|
Length = 319 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 106 QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQP 165
Q Q Q QQQQ Q Q H Q QQQQ P QP +Q
Sbjct: 1 NPYQQNTNQYPPQNQQQQPYQQQPY----HQQMPPPPYSPPQQQQGHFMPPQPQPYPKQS 56
Query: 166 QQQQQ 170
QQQQ
Sbjct: 57 PQQQQ 61
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q Q Q +QPP + +Q Q+ H+ Q Q
Sbjct: 104 PQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPV-----HSAAPQPAVQT 158
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
Q +QQ P++ + P+ ++ R ++
Sbjct: 159 VQPAVPEQQVQPEEVVEPAPEVKRPPRKDTVII 191
|
Length = 324 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
QQQ Q Q+ Q QQQ + Q+ Q+ Q L AQQQ + + +Q
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQ--------LESLIAQQQAELDRLERQL 106
Query: 150 QQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+Q + ++ R+D
Sbjct: 107 ETLQKQLSELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ--QQQQQQLQMQQILLQRHA 136
L +A+++ +Q +++ ++ QQ + + +Q Q + + L + A
Sbjct: 3 AARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAIA 62
Query: 137 QQQQQ-----HQQQHQQQQQQQQQ 155
QQQQ+ Q + ++Q Q+
Sbjct: 63 QQQQELEQAEKQVEQAREQWQEAN 86
|
Length = 122 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
QQ+ +QQ + + Q Q + QQQ+L + L ++QQ+ + Q +Q Q
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQ 204
Query: 151 QQQQQPPQQPQQQQPQQQQQ 170
++ + Q+ +Q++ + Q
Sbjct: 205 EKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 22/78 (28%), Positives = 28/78 (35%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+Q + + QQ + P Q Q QQ Q Q ++ Q Q Q QQ
Sbjct: 54 EQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQ 113
Query: 151 QQQQQPPQQPQQQQPQQQ 168
QQ P P QPQ
Sbjct: 114 PTPQQEPYYPPPSQPQPP 131
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 17/93 (18%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
++ +I+ +++QQ+ + Q +Q+QQ ++ +Q+QQ +Q Q + Q
Sbjct: 25 FLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQ-QRASFMAQAQEA 83
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q Q + ++ + +Q +++Q+
Sbjct: 84 ADEQRQHLLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+QQ Q Q Q Q+ Q+Q+ + L+ Q L + +QQ +Q +
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDEL 118
Query: 150 QQQ 152
QQ+
Sbjct: 119 QQK 121
|
Length = 390 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + A + Q + + Q +QQQ ++++Q++ Q QQ+ + + Q
Sbjct: 644 RQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQS 703
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q +Q++ QQ Q +++Q+Q
Sbjct: 704 VQ------ETEQEERVQQVQPRRKQRQ 724
|
Length = 1068 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666
K +++ T V FS DG LLA+G D +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 12/89 (13%), Positives = 46/89 (51%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ K +Q ++ ++Q+ +Q +Q++ +Q ++ +Q +Q Q ++ Q + +Q
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQ 128
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + ++ ++ ++Q +++ +
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 18/101 (17%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 82 QLIKAREQQ--------QQQQQQQQQQQQQQQQ---SQQPPHQQQQQQQQQQQQLQMQQI 130
+ ++ + Q+ + Q ++ QQQQ+ Q+ +++ + +Q+L+
Sbjct: 282 RRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQ 341
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
LQ+ Q++ + Q + +Q +Q+ ++ ++Q ++++QR
Sbjct: 342 RLQQQNPQRRIERAQQRLEQLEQRL--RRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 6e-05
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
R ++ ++ Q+Q Q+QQQ Q+ +Q++ Q Q + Q Q IL Q
Sbjct: 7 RRRKLEELQKQAQEQQQAQE--------EQEEAQAQAEAQKQAILRQ 45
|
Length = 110 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 7e-05
Identities = 15/72 (20%), Positives = 40/72 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + +A EQ++ +Q ++++ + Q+QQ Q ++Q Q +Q+QQ+ Q ++ ++ + +
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE 150
Query: 140 QQHQQQHQQQQQ 151
+ + +
Sbjct: 151 AAKAKAAAEAAK 162
|
Length = 387 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 14/72 (19%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-QQQQLQMQQILLQRHA 136
++ +L +A E++ + +Q+ ++ Q+ Q Q P + ++ QQ+ +Q + ++++ + ++
Sbjct: 316 RLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLK 375
Query: 137 QQQQQHQQQHQQ 148
+++Q+ + QQ
Sbjct: 376 RKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 14/100 (14%), Positives = 66/100 (66%), Gaps = 9/100 (9%)
Query: 79 IETQLIKA-REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQR--- 134
+E Q KA RE++++ ++++++++++++ ++ + QQ++ + ++ ++ ++
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKEREVAR----LRAQQEEAEDEREELDELRADLYQE 211
Query: 135 -HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ ++++Q +++ +++++Q+Q Q+ +++Q +++++R
Sbjct: 212 EYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQ 251
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 7e-05
Identities = 15/91 (16%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 66 RTNEKHSEVAASYIETQLIKARE-QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+ + E+ E +L + E ++Q++++ ++++++ ++++++ Q+Q++Q++ Q+Q
Sbjct: 52 QDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQ 111
Query: 125 LQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ + + A++ + +++H QQ +Q++
Sbjct: 112 KEEAEARAREEAERMRLEREKHFQQIEQERL 142
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
PH + + + Q+Q+ Q +Q L+ Q ++ Q+Q QQ Q Q QP QQPQQ +++
Sbjct: 143 PHMMKTKSKNQKQENQEKQEKLEESEIQSEK-QEQPSQQPQSQPQPQQQPQQPNNNKRKA 201
Query: 171 RRDG 174
+G
Sbjct: 202 MEEG 205
|
Length = 222 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 10/89 (11%), Positives = 22/89 (24%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y Q Q Q Q Q + + + + ++ L A
Sbjct: 112 YYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSEQLRVELAELAA 171
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + +P + + Q
Sbjct: 172 EIYSDASHRVELAKNFMEPQAETEAQPEA 200
|
Length = 332 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 7e-05
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ- 139
+ +K + QQ QQ Q++++Q+ ++QQ +Q + +++ + + Q
Sbjct: 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE 284
Query: 140 ----------------------QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q+ H + Q + + + ++ +QQ
Sbjct: 285 RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQ 337
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-05
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666
S + +++ T V FS DGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 12/91 (13%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--LLQRHAQQQQQ 141
+A E ++Q+ +Q +Q++ +Q++ +Q +Q +Q + + +Q + A + +
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKA 134
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ +++ +++ Q ++ + + + +
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK 165
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 14/81 (17%), Positives = 37/81 (45%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ QQ+ +Q Q +++ Q Q + QQ L + +++ Q+ + Q
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 153 QQQPPQQPQQQQPQQQQQRRD 173
+Q ++ + +++Q+R++
Sbjct: 200 LEQLQEKAAETSQERKQKRKE 220
|
Length = 1123 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-05
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ R+ ++ Q+Q Q+QQQ Q++Q ++ Q Q + Q+Q ++QIL
Sbjct: 6 IRRRKLEELQKQAQEQQQAQEEQ------EEAQAQAEAQKQAILRQIL 47
|
Length = 110 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPH---------QQQQQQQQQQQQLQMQQILLQRHA 136
A+ ++Q++ Q Q Q Q + +Q P Q Q QQQ Q
Sbjct: 361 AQRKEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQP---LGWP 417
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG--NTNGLLGNDSLMRQ 194
+ + + P + Q + L +
Sbjct: 418 RMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQS-LPLSQD 476
Query: 195 NPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL---LDPNHASYI 245
P + A++ + K VL S KQ GE + L ++P A+ I
Sbjct: 477 LP-QPQSTASQGGQNKKLAQVLA-SATPQMQKQVLGERLFPLVEAIEPALAAKI 528
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 47/297 (15%), Positives = 80/297 (26%), Gaps = 31/297 (10%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
+ ++++A+ Q Q+ + + LQ
Sbjct: 67 ETAKLSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGY---EASTDPEYIPDLQPDP 123
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGND 189
L + + Q Q + Q Q Q + ++ + Q Q+R A L +L
Sbjct: 124 SLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQG 183
Query: 190 SLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAA 249
RQ A + E+ Q + Q+ A
Sbjct: 184 MPPRQ-----AAFPQQGPPEQ-----------PPGYPQPPQGHPEQVQPQQFLPAPSQAP 227
Query: 250 AT----GQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMG 305
A Q Q Q P + + P P+
Sbjct: 228 AQPPLPPQLPQQPPPLQQP---QFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTP 284
Query: 306 IPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLL 362
PG QG N P +P L+QQ + + PQ Q+ L+ Q ++ L
Sbjct: 285 HPGLPQGQNAPL----PP-PQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALS 336
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 880 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918
TL H G + ++A S + +AS S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 15/93 (16%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + K EQQ ++ ++Q+ +Q +Q+ + ++ +Q +Q + Q Q+ A++
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK-QAEEKQKQAEEA 124
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q + + + + + ++ + Q +++ +
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ + Q+ QQ QQ+ + +++ +Q++Q+ Q+ + L + ++ QQQ + QQ
Sbjct: 262 RAELLQRLQQLQQRLAR--AMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQ 319
Query: 153 QQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLK 212
+ Q + + + +Q+ +R + L +QNP R+ + +
Sbjct: 320 RLQRALERRLRLAKQRLERL---------------SQRLQQQNP------QRRIERAQQR 358
Query: 213 LPVLRDSLDDAA------MKQRFGENMGQL--LDP 239
L L L A +QR QL L P
Sbjct: 359 LEQLEQRLRRAMRRQLKRKRQRLEALAQQLEALSP 393
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 12/103 (11%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 79 IETQLIKAREQQQQQQQQQ-----QQQQQQQQQSQQPPHQQQQQQQQQQQQLQ---MQQI 130
++ Q I+ RE+++Q++ ++ +Q + ++ Q+ + Q+++++Q++L+ +
Sbjct: 76 LQEQ-IEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFN 134
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ +++++ +++ ++ + + Q + ++++ + +++ R
Sbjct: 135 EERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERK 177
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 87 REQQQQQQQ-----QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+E+QQQQ+Q Q++ +Q QQ+ Q P + QQ+ +++ + +Q QR Q+ QQ
Sbjct: 42 KEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQ 101
Query: 142 H---QQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+Q ++QQQ Q+ ++ Q+ + + +
Sbjct: 102 RCQQQEQRPRRQQQCQRECREQYQEHGRGEGE 133
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
QQ Q Q QQQQ QQP HQQ Q Q Q H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQ------QGHFMPPQPQPYPKQS 56
Query: 149 QQQQQQQPPQQPQQQ 163
QQQQ Q
Sbjct: 57 PQQQQPPQFSSFLSQ 71
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 65 ARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
A E+H T+L K + Q +Q Q S Q +++Q QQQ
Sbjct: 187 AMVFEQHKSA-----RTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQ 241
Query: 125 LQMQ-QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
Q L + QQ+ ++Q QQ + QPQ
Sbjct: 242 QQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQ 279
|
Length = 1047 |
| >gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone deacetylase 4 | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 87 REQQQQQQQQQ-QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
REQQ QQ+ +QQQQ Q+Q Q+Q + +Q + Q LQ H +QQQ+
Sbjct: 7 REQQLQQELLLLKQQQQIQKQLLIAEFQKQHENLTRQHEAQ-----LQEHLKQQQELLAM 61
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+QQ+ +++ + Q+Q+ + ++ RR+
Sbjct: 62 KRQQELLEKERKLEQQRQEQELEKHRRE 89
|
This domain is found in eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam00850. The domain forms an alpha helix which complexes to form a tetramer. The glutamine rich domains have many intra- and inter-helical interactions which are thought to be involved in reversible assembly and disassembly of proteins. The domain is part of histone deacetylase 4 (HDAC4) which removes acetyl groups from histones. This restores their positive charge to allow stronger DNA binding thus restricting transcriptional activity. Length = 92 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q I+ Q QQ+ + + + Q+ + P Q++QQ + +Q Q + QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPR-------QQQNR 485
Query: 142 HQQQHQQQQQQQQQPPQ-------QPQQQQPQ---QQQQRRD 173
Q +Q+Q Q Q P+ +P+ QPQ Q RR
Sbjct: 486 SNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRRW 527
|
Length = 582 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQS--QQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K ++ Q + Q+++++ Q+++Q +Q ++ ++ +QQ+LQ +Q LQ+
Sbjct: 36 AQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQ 95
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q QQ QQ QQ+ Q
Sbjct: 96 QAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|147845 pfam05914, RIB43A, RIB43A | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 18/76 (23%), Positives = 42/76 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
QL R+ Q+QQ Q+++++++++Q ++ +Q Q + L+ Q+ L++ ++Q
Sbjct: 279 PEQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQ 338
Query: 140 QQHQQQHQQQQQQQQQ 155
Q ++Q+ QQ
Sbjct: 339 LDSANQQLAKEQKAQQ 354
|
This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterized in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells. Length = 379 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQ 124
NE E L A +Q+Q ++Q Q + Q++++ +Q + Q+
Sbjct: 601 NETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQR 660
Query: 125 LQMQQILLQRHAQQQQQ-HQQQHQQQQQQ-QQQPPQQPQQQQPQQQQQRRD 173
LQ +Q L+ + +QQ + Q +Q Q Q +QQQ + + D
Sbjct: 661 LQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 2e-04
Identities = 28/62 (45%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPP--QQPQQQQPQQQ 168
P QQ QQ QQQ Q Q + Q QQ Q Q Q QQ Q P QPQ QQPQQ
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
Query: 169 QQ 170
Sbjct: 811 VA 812
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 7/85 (8%), Positives = 41/85 (48%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ ++++ Q+Q++Q ++ ++Q +Q+Q ++ + + + A++ +
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAK 161
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQ 169
+ + +++ + + +++
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKK 186
|
Length = 387 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 879 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918
S TL H G + ++A S + Y+AS S D +KLW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 12/93 (12%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+L Q++ +++++Q+++++ ++ ++ Q+Q+ Q+ +++Q++ ++ LQ +++
Sbjct: 203 ELRADLYQEEYERKERQKEKEEAEKRRR---QKQELQRAREEQIEEKEERLQEERAEEEA 259
Query: 142 -HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ ++Q + ++ + ++++ ++ + RR+
Sbjct: 260 ERERMLEKQAEDEELEQENAEKRRMKRLEHRRE 292
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 9/114 (7%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 66 RTNEKHSEVAASYIETQLIKAR------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ 119
R + E E + + E + + Q+++++Q++ +++ + ++ ++++
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 120 QQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+++++ + +++ + + +++ + +++ + +++++++ ++ + QQ++ D
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAED 196
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
QQ Q Q L Q LQ+ + Q+Q + +QQ + + Q +Q
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQ 114
|
Length = 390 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K++ Q+Q+ Q++Q++ ++ + QS++ QQ Q Q Q Q Q QQ
Sbjct: 149 KSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ--ILLQRHAQQQQQ 141
IK Q+ Q + + Q QP +Q Q ++ Q + +
Sbjct: 101 IKITLPNQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSE 160
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + + + +
Sbjct: 161 QLRVELAELAAEIYSDASHRVELAKNFME 189
|
Length = 332 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 34/191 (17%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM-QQILLQRHAQQQQ 140
+ I A + +Q + + +Q +Q+ QQ + QL ++ L + +
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220
Query: 141 QHQQQHQQQQQQQQ--------------QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
Q++ ++ + + + + + + R A
Sbjct: 221 ADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTA 280
Query: 187 GNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENM-------GQLLDP 239
L+ G +L PV + +RFG+ G ++
Sbjct: 281 PEKMLISSTGGFGAL------RGQLAWPV------TGRILRRFGQADGGGLRWKGMVIGA 328
Query: 240 NHASYIKSAAA 250
+ + +K+ A
Sbjct: 329 SAGATVKAIAD 339
|
Length = 420 |
| >gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 11/83 (13%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K E ++ T+ + ++QQ++++ +Q+++++++ Q+ + Q+ Q+
Sbjct: 269 KKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKL---QE 325
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQ 152
++ A+ +++ +++ ++ +Q+
Sbjct: 326 ERKEQLAKLRKEEKEREKEYEQE 348
|
This family of proteins has no known function. However, one of the members is annotated as an EF-hand family protein. Length = 349 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 26/109 (23%), Positives = 51/109 (46%)
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ RT ++ ET+ AR + Q+ +Q+++ +Q+ ++Q + QQ+ +
Sbjct: 82 QLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q L+ A+Q++Q + Q Q Q Q+Q Q + Q
Sbjct: 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLD 190
|
Length = 499 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 66 RTNEKHSEVAASYIETQLIKAR-------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ 118
K E + + + + Q+Q QQ+QQ+ Q Q + ++ + +QQ+
Sbjct: 69 EAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQR 128
Query: 119 QQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+Q ++ L+MQ+ + R ++ +++ + +++
Sbjct: 129 RQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 12/80 (15%), Positives = 34/80 (42%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQ+ ++ + ++ + +Q Q++ + + + + + + ++ QQ
Sbjct: 530 RQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
Query: 147 QQQQQQQQQPPQQPQQQQPQ 166
Q Q + Q+ + P Q
Sbjct: 590 QLQARIQRLAARAPAWLAAQ 609
|
Length = 1486 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ Q Q Q + + Q+ Q+Q+ + + QQ A +QQ +
Sbjct: 59 KQQAQNQTATNDALANQLTAL--QKAQESQKQELEGILKQQAKALDQANRQQAALAKQLD 116
Query: 149 QQQQQ 153
+ QQ+
Sbjct: 117 ELQQK 121
|
Length = 390 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 112 HQQQQQQQQQQ--QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
H +QQ Q Q L Q LQ + Q+ +Q+ + +QQ + Q +QQ +
Sbjct: 57 HGKQQAQNQTATNDALANQLTALQ---KAQESQKQELEGILKQQAKALDQANRQQAALAK 113
Query: 170 Q 170
Q
Sbjct: 114 Q 114
|
Length = 390 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL-----QRHAQQQQQHQQ 144
+ Q+Q +++ ++ Q + Q+ ++++ Q+++Q+LQ Q L + Q+ QQ QQ
Sbjct: 34 KAAQKQLEKEFKKLQAELQK----KEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQ 89
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQ 167
+ QQ+QQ QQ QQ QQ+ Q
Sbjct: 90 ELQQKQQAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 24/105 (22%), Positives = 29/105 (27%), Gaps = 17/105 (16%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ----------------QQQQQ 124
Q + A +QQQ P Q Q
Sbjct: 75 LQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPAN 134
Query: 125 LQMQQILLQRHAQQQQQHQ-QQHQQQQQQQQQPPQQPQQQQPQQQ 168
+ Q QR QQ QQ Q QQQ Q+ + Q QQQ
Sbjct: 135 SPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQ 179
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ K E+ QQ+ ++ Q +Q QQ +++QQ ++Q Q +Q+ ++
Sbjct: 32 VEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQE---HVQQQMKE 88
Query: 139 QQQHQQQHQQQQQQ 152
+ +QQ Q++QQ+
Sbjct: 89 IEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-04
Identities = 16/71 (22%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQH 142
++ R Q+ +++ + +Q+ ++ SQ+ Q Q++ ++ QQ+L+ + L+R ++Q +
Sbjct: 317 LQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKR 376
Query: 143 QQQHQQQQQQQ 153
++Q + QQ
Sbjct: 377 KRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQ-------QQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
KAR Q +QQQ ++++Q +Q QQ + + ++Q Q+ +Q+ ++QQ+ +R +
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQR 723
Query: 138 QQQQ------------------------------HQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q + + + Q +Q +
Sbjct: 724 QLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEEN 783
Query: 168 QQQRRDGA 175
+ RD
Sbjct: 784 NAENRDNN 791
|
Length = 1068 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I + A EQ+QQ+ Q+ ++ +Q+QQS + Q Q+ Q Q +L +
Sbjct: 41 IANRWQDA-EQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDV 99
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+ +Q ++++Q+ + QQQ QQ
Sbjct: 100 ATARDEWLEQLEREKQEFFKALQQQTGQQ 128
|
Length = 250 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 17/99 (17%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
L + + + ++ +QQQ+ + + + + Q ++Q+L+ L QR Q Q
Sbjct: 293 EHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRLER---LTQRLNPQIQ 349
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLN 179
+ QQ+ QQ +++ + ++ +++ ++ + + L+
Sbjct: 350 RQQQRLQQLERRLDKALRRQLKRKRERLEALVEQLESLS 388
|
Length = 440 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
IKA Q +QQ Q+ + Q + +S+ ++ +QQ ++ Q+ LLQ Q+ +
Sbjct: 299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
Query: 144 QQHQQQQQQQQQPPQQPQQQQP--QQQQQ 170
H+ ++ QQ Q QQQ
Sbjct: 359 DAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ--- 145
+QQ + +Q Q +QQQ +Q+Q Q Q + Q L R Q Q+ Q
Sbjct: 467 RQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRR 526
Query: 146 ----------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ QQQQ QP + Q + + + G N N S
Sbjct: 527 WNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRGQGGRGNQNRNQRSGNNTVS 581
|
Length = 582 |
| >gnl|CDD|182789 PRK10863, PRK10863, anti-RNA polymerase sigma factor SigE; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 112 HQQQQQQQQQQQQLQM--QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ QQQQ Q+Q++++ Q LQR +Q +Q Q QQ Q P Q Q Q
Sbjct: 160 NGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGTQSLGTQSQ 216
|
Length = 216 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 5e-04
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ-------QQQQQQQQQLQMQQILL 132
E Q + RE+ Q++ +Q QQ+ QQ + + P QQ ++QQQQQ+Q Q
Sbjct: 44 EQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQE----C 99
Query: 133 QRHAQQQQQHQQQHQQQQ----QQQQQPPQQPQQQQPQQQQQRR 172
Q+ QQQ+Q ++ QQ Q +Q Q+ + + Q+ ++ R
Sbjct: 100 QQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEER 143
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQ-------QSQQPPHQQQ 115
A+ E ++ A + +E ++A E+++ Q+Q QQ+QQ+ Q + Q +QQ
Sbjct: 68 LEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQ 127
Query: 116 QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
++Q ++ ++Q + +L Q ++ + + +++
Sbjct: 128 RRQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 53/162 (32%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQ--------------- 108
+A T ++ EV T ++AR + +Q + Q QQQ +
Sbjct: 306 LAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNEL 365
Query: 109 --------QPPHQQQQQQQQQQQ----------------------------QLQMQQILL 132
Q ++Q +Q QQQ Q Q+ L
Sbjct: 366 AGWRAQFSQQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLR 425
Query: 133 QRHAQQQQQHQQQHQQQQQQQQ--QPPQQPQQQQPQQQQQRR 172
QR Q Q ++ Q Q Q Q Q Q+ + R
Sbjct: 426 QRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMR 467
|
Length = 1047 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 15/85 (17%), Positives = 36/85 (42%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
E + T + Q +++ Q Q + QQQ+ + +++QQ+
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQ 152
+ L ++ A+ Q+ +Q+ ++ Q
Sbjct: 200 LEQLQEKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ--QQLQMQQI-------- 130
Q + R QQ QQ+ Q QQ + + Q QQQ + QQ
Sbjct: 138 DQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDES 197
Query: 131 -LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGND 189
L R + +Q+ + + +Q + Q + +R ++G + G+
Sbjct: 198 EALVRLREADGTLEQRIKGAEGGGAMKVL--KQPKKQAKSSKRRTIAQIDGIDSDDEGDG 255
Query: 190 S 190
S
Sbjct: 256 S 256
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 21/90 (23%), Positives = 49/90 (54%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
V+ S +L + + + +++ Q+ ++ Q+ H++ Q +Q+QQ+L+ ++ L
Sbjct: 13 VSFSEETYELQFPKPIEVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLL 72
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQ 163
+Q Q+H QQ ++ + +Q Q+ QQ+
Sbjct: 73 ADREQFQEHVQQQMKEIEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ Q + Q+ + + + QQQ Q +Q Q + Q + Q+ L
Sbjct: 57 LRTFARSLQALNLELIQELNELKARLQQQLLQSREQ---LQLLIESLAQLSSEFQE-LAN 112
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHL 177
++ + + QQ +Q P + ++ ++Q ++R
Sbjct: 113 EIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHESA 156
|
Length = 448 |
| >gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 14/97 (14%), Positives = 35/97 (36%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
S A+ +Q+Q +Q Q + + +Q + + Q + Q+
Sbjct: 102 PSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKA 161
Query: 136 AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q ++ + + +Q Q+ P+Q + +
Sbjct: 162 RTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQ 198
|
FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis [Cellular processes, Cell division]. Length = 298 |
| >gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 5e-04
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 98 QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q Q P H Q Q + Q Q +H QQ QHQ+QHQQ
Sbjct: 291 HHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHH----QHQQQDLQHQEQHQQH 338
|
ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 S. cerevisiae). The N-terminal two thirds of the protein are necessary for DNA binding, and the N-terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure. Length = 508 |
| >gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + Q+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQINNNSQRVQQGQPGN 87
Query: 159 QPQQQQP 165
P +QQ
Sbjct: 88 NPARQQM 94
|
Length = 145 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (100), Expect = 6e-04
Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 28/237 (11%)
Query: 475 PAGSVTLDGSMSNSFRGNDQVSKNQ---TGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 531
P GS+ GS + R D S + T V S + + +
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR- 309
Query: 532 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELRAD 587
T + S+ H G S + F DG+ ++ S+ +LWD + +
Sbjct: 310 -LWDLETGKLLSSLTLKGHEGPVSS--LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 588 MDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 647
++ S+ + + + + D R D+S G + + TS+V FS
Sbjct: 367 LEGHSNVLSVSFSPDGRVV--SSGSTDGTVRLWDLSTGSLLRNLDGH---TSRVTSLDFS 421
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704
DGK LA+G D LW T V FSP LA+ S D +V
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLKS------------VSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 20/83 (24%), Positives = 44/83 (53%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A ++ QQ + ++ + Q +Q Q P ++Q+++ +++Q Q + L Q
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSV 704
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQ 162
Q+ +Q+ + QQ Q ++ +Q Q
Sbjct: 705 QETEQEERVQQVQPRRKQRQLNQ 727
|
Length = 1068 |
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQ 144
RE + +QQ + +Q+ + +Q Q +QQ Q+ ++ + L Q A+ Q Q Q
Sbjct: 79 LRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARKAQEKFAELARQEQAEAQAQRQY 138
Query: 145 QHQQQQQ 151
+ +Q+
Sbjct: 139 LEELEQE 145
|
This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152 |
| >gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 13/86 (15%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 82 QLIKA---REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL+KA +++ ++ ++++++Q++Q + + +Q ++ + A++
Sbjct: 5 QLLKAGLVDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAK-----------AEK 53
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQ 164
++ ++ ++Q+Q + +Q Q +Q
Sbjct: 54 AERDRELNRQRQAEAEQKAIVAQIKQ 79
|
This domain, found in various prokaryotic proteins, has no known function. Length = 177 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQL-QMQQILLQRHAQQQQQHQQQHQ 147
+ + QQ P Q Q QQQQ Q Q Q QQ Q QQ
Sbjct: 56 VAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPT 115
Query: 148 QQQQQQQQPPQQPQQQQPQQQQ 169
QQ+ PP QPQ QQ Q
Sbjct: 116 PQQEPYYPPPSQPQPPPAQQPQ 137
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
K ++Q+ Q++Q++ ++ + Q + Q+ P QQ Q Q Q QQQ Q
Sbjct: 150 SKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ-QQHQQQ 149
Q + Q Q P Q Q Q+ L Q + Q QQ
Sbjct: 106 GPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQ 165
Query: 150 QQQQQQPPQQPQQQQPQQ-QQQRRDGA 175
Q Q+ Q QQQ + Q+ DGA
Sbjct: 166 QSAQKNDESQLQQQPNGETPPQQTDGA 192
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 8e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + QQ+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 159 QPQQQQ 164
+QQ
Sbjct: 88 LNARQQ 93
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
+L + RE+ Q+ + +++Q QQ+ QQ QQQ+ +Q + + ++ L + Q+
Sbjct: 173 AELKQTREELAAQKAELEEKQSQQKTLLY--EQQAQQQKLEQARNERKKTLTGLESSLQK 230
Query: 141 QHQQ 144
QQ
Sbjct: 231 DQQQ 234
|
Length = 428 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 9e-04
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 676 LEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVM 727
L+ H+S I D++F+P LA+ S D T+RVW+ + S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 728 SLDFHPNKDDLICSCDGDGEIRYWSINN 755
+D++P ++CS D + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 9e-04
Identities = 16/77 (20%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQ--QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K +++Q + ++ ++ Q+ +++ + + +++++++LQ + QR
Sbjct: 19 AQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQ 78
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q+ QQ Q+ QQ++ Q+
Sbjct: 79 QKLQQDLQKRQQEELQK 95
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQ-----QPPHQQQQQQQQQQQQLQMQQILL 132
Y + Q A + Q QQ QQ Q Q QQ Q QP +QQ QQ Q Q + LL
Sbjct: 791 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLL 850
Query: 133 QRHAQQQQQHQ 143
R+ + H+
Sbjct: 851 MRNGDSRPLHK 861
|
Length = 1355 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 33/124 (26%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQ---------PPHQQ 114
+ + N + E +E L Q+QQQ+ Q +Q ++ +
Sbjct: 839 LRQLNRRRVE-----LERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLA 893
Query: 115 Q-------------------QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
QQ QL+ +LQ +Q +Q +Q +QQ QQ Q+
Sbjct: 894 DRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRD 953
Query: 156 PPQQ 159
QQ
Sbjct: 954 AKQQ 957
|
Length = 1486 |
| >gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 26/96 (27%)
Query: 88 EQQQQQQQQQQQQ---------QQQQQQSQQPPHQQQQQQQQQQQ---QLQ--------- 126
+Q Q QQQ QQ QQ P QQ + +QQ QL
Sbjct: 2 QQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCE 61
Query: 127 -----MQQILLQRHAQQQQQHQQQHQQQQQQQQQPP 157
+Q ++ Q+ QQ+QQ Q+ ++ +Q Q P
Sbjct: 62 ALRQMVQGVIQQQQQQQEQQQGQEVERMRQAAQNLP 97
|
They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans. Length = 110 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP----------------HQQQQQQQQQQQQLQMQQ 129
+++Q +Q QQQ +Q+ + P H +Q+ +Q+ L Q
Sbjct: 376 TSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVALHGQI 435
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+ Q Q Q Q+Q Q+ + +Q+ ++ QQ D
Sbjct: 436 VPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLAD 479
|
Length = 1047 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
+ QL ++ Q+ Q+Q+ + +QQ ++ ++QQ +Q +LQ
Sbjct: 72 LANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQ 119
|
Length = 390 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + QQ Q + + Q QQ+ +Q + +I L Q+ + Q+
Sbjct: 61 LNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDEIKITLP---NQEPAYYMQNH 117
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ + Q P QPQ Q P Q + G +S
Sbjct: 118 RSEPIQ---PTQPQYQSPTQTNVASMTIEETQSPNVPIEGINS 157
|
Length = 332 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 15/95 (15%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q+++ + ++ QQ QQ ++ + Q++Q ++QQ L+ + ++ Q+
Sbjct: 222 QVLEKELKHLREALQQTQQSHAYLTQKR---EAQEEQLKKQQLLKQLRARIEELRAQEAV 278
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ ++ + ++ P + Q +Q+ H
Sbjct: 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIH 313
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
K ++ +QQ ++Q++ Q Q+ + + +++I Q+H Q
Sbjct: 320 MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ 379
Query: 140 QQHQQQHQQQ--QQQQQQPPQQPQQQQPQQQQQ 170
H Q Q+ Q+ Q ++ Q +Q
Sbjct: 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 18/104 (17%), Positives = 50/104 (48%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+K + +A+ +++Q++ + + Q +Q+ Q + +Q + ++ QQ Q
Sbjct: 174 QKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233
Query: 129 QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q + +Q+ QQ + +Q +++++Q + Q +Q+ +
Sbjct: 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ 277
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQ--------QQQQQQSQQPPHQQQQQQQQQQQ 123
S+V + + I+ Q + Q QQ+ Q Q+ Q Q+ Q
Sbjct: 186 SQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQ 245
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+ + ++ +Q Q+ + + +Q+ Q Q +QQ
Sbjct: 246 QIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQA 292
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 22/90 (24%), Positives = 35/90 (38%)
Query: 83 LIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQH 142
L +++Q Q Q + Q + Q+ Q + Q + L R A QQ
Sbjct: 170 LQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQT 229
Query: 143 QQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q QQ+ Q Q QQ + Q +++ R
Sbjct: 230 AQAIQQRDAQISQKAQQIAARAEQIRERER 259
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 22/88 (25%), Positives = 35/88 (39%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
L + R Q + Q Q Q Q+Q Q S Q + + Q++ + L A Q
Sbjct: 155 TLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQA 214
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
++ ++ QQ Q QQ+ Q Q
Sbjct: 215 RTEELARRAAAAQQTAQAIQQRDAQISQ 242
|
Length = 499 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.001
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 105 QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQ 164
Q Q P QQ+ Q Q Q QQ+Q + +L Q+ Q + QQ Q Q QQ QQ Q
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 165 PQQQQQ 170
+QQ
Sbjct: 88 LNARQQ 93
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 17/84 (20%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E+ KA ++Q +++ +++Q + ++ + + Q+ +++ Q+ + + ++ ++
Sbjct: 12 ESPAGKAAQKQLEKEFKKRQAELEKLEKEL----QKLKEKLQKDAATLSEAAREKKEKEL 67
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ 163
Q+ Q+ Q++QQ+ QQ Q+ QQ+
Sbjct: 68 QKKVQEFQRKQQKLQQDLQKRQQE 91
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ---QQQQQQQQQLQ 126
K ++ A + +++A Q + Q + Q + + + ++ Q +L
Sbjct: 89 KKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELD 148
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q LL+ + Q + +
Sbjct: 149 AAQALLRAAEALVEAAQAALASAKLNLEY 177
|
Length = 372 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
I + Q + Q+ + + HQ++ + +Q LQ Q + QQ Q +
Sbjct: 252 IVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEK 311
Query: 144 QQHQQQ----------QQQQQQPPQQPQQQQPQQQQQR 171
+ ++Q +Q++ + ++ Q P Q R
Sbjct: 312 LEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILR 349
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--L 131
AA+ L +A QQ Q Q++ + Q Q+ + + +++I L
Sbjct: 15 GAAAAAAASLDQALAAAQQTVAAAAQSQKKIDKW-----ADQTQELLAEIRQLLKEIENL 69
Query: 132 LQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q Q+ Q Q+ QQQ
Sbjct: 70 RVYNDQLQRLVANQQQEIASLQQQ 93
|
This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length. Length = 250 |
| >gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
F E AA E + +++ +++ + +QQ+ + + + + +
Sbjct: 24 FDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAE 83
Query: 123 QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQ 159
Q + AQ +Q + Q Q Q Q
Sbjct: 84 GYEAGYQ---EGLAQGLEQGLAEGQAQAAPQAAQLQA 117
|
Length = 246 |
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 19/127 (14%), Positives = 30/127 (23%), Gaps = 9/127 (7%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q S++ + Q+ M QQ ++ Q
Sbjct: 11 QAQSQVHTGAASSKKSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQAATAMHNTG 70
Query: 155 QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLP 214
P P Q Q++ + G P N + E P
Sbjct: 71 ANNPAPSVMSPAFQSQQKFSS---------PYGGSMADGTAPKPTNPLVPVDLFEDQPPP 121
Query: 215 VLRDSLD 221
+ L
Sbjct: 122 ISDLFLP 128
|
Length = 861 |
| >gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1) | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 90/495 (18%), Positives = 159/495 (32%), Gaps = 65/495 (13%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q QQ + + + + +++Q QQQ Q L+ +Q+++ ++Q +QQ
Sbjct: 248 QPQQHETSPAESYGAAAAGLNSRENKRKQMLPQQQQQSFDQLVSPRKEQKREERRQLKQQ 307
Query: 150 QQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEE 209
+ Q+ +Q QQ+ Q D G L DS R N A+A
Sbjct: 308 LRDMQKQLRQLQQKYVQIYDSTDDSTDDDIHEDIGNLSEDSPSRSNSLDASAPDNGGDRP 367
Query: 210 KLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQ 269
+ + D M + P + AAA + Q
Sbjct: 368 RSDNEMS----DLDMMSKMMSHKPMHPNKPGGFVDMDRAAA---------------LYEQ 408
Query: 270 VQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPL 329
Q + T KS++ GS G + G TLK T L +
Sbjct: 409 EQRMVKDDGKGTA-PKSDLPEREGMLRQSCIGSPGPSSGLDGEGLAETLKQELNTSLSQV 467
Query: 330 -----------RSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQNLTSPSASDESRR 378
R L +Q KP AP+ + ML Q +L +++ + + +D +
Sbjct: 468 VDTVVKRFVHQRRALSKQAKPERAAPEQLFKDLMLPSQ----MLDRKSPRTHTVNDRGQC 523
Query: 379 FRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQ 438
F + +S + D +NV + M Q Q
Sbjct: 524 F----GDPDISTAAMFIIPKPPDSFANVAAAALYNSPF---------------CMPQTPQ 564
Query: 439 QQQQQQQQNS-------NPQQHTLSNQQ--SQSSNHNLHQQDKMGPAGSVTLDGSMSNSF 489
Q +Q + ++H +++ + ++ + L +D +GPA +S
Sbjct: 565 PQDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRILALRDAVGPAAGTHHQPLHPSSL 624
Query: 490 RGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS--TPSTHTPGDVISMPA 547
+ P++ + P S + P +P PS PG P
Sbjct: 625 SASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEVFMGYPFQSPHLGAPSGSPPGKDRDSPD 684
Query: 548 LPHSGTTSKPLMMFG 562
LP T+ P ++
Sbjct: 685 LPRPTTSLHPKLLSA 699
|
The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908 |
| >gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 2/97 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
Q + +Q+ H + +++ + Q QQ Q+ QQ
Sbjct: 197 HMNQGLRARQEMMGLGIMAGGVYGVHDGRSKRRLVDRYPQFQQG--QKQVLSPQQRFLHG 254
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
++ + PP + G
Sbjct: 255 MERYEASGMPPPAEWAGSNGLHVLPGRREEVPRGIFR 291
|
Length = 505 |
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 80 ETQLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
E +L++ +E+Q+Q +Q Q+ +Q +QQ + P ++ Q+ Q Q Q
Sbjct: 99 EKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVANNPQPQVQ 158
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q+ P Q +P Q
Sbjct: 159 PQFGPNPQQRINPQRFGFPMQPNMGMRPGFNQ 190
|
This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279 |
| >gnl|CDD|213398 cd12191, gal11_coact, gall11 coactivator domain | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 25/90 (27%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQ---------PPHQQQQQQ----------------QQQQQ 123
QQQQQ QQQQQQQ Q Q PP + QQ
Sbjct: 1 PQQQQQPQQQQQQQMPQNPQLVNMMDNMPIPPQLLAKIPNLPPEVKTWRQLKAWLQQNNI 60
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
Q + + + Q Q+ QQQQQQQ
Sbjct: 61 PPQAMEQIKEVQQTHFQLLMQRRQQQQQQQ 90
|
Gall11/MED15 acts in the general regulation of GAL structural genes and is required for full expression for several genes in this pathway, including GALs 1,7, and 10 in Saccharomyces cerevisiae. GAL11 function is dependent on GCN4 functionality and binds GCN4 in a degenerate manner with multiple orientations found at the GCN4-Gal11 interface. Length = 90 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.001
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 87 REQQQQQQQQQQQQQQQQQ--------QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
REQQ QQ+ +QQQQ Q Q Q +Q + Q Q+ Q Q++L + Q+
Sbjct: 5 REQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQLQEHIKQQQEMLAIKQQQE 64
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQ 163
+ Q++ +QQ+Q+Q+ Q+ +QQ
Sbjct: 65 LLEKQRKLEQQRQEQELEKQRREQQ 89
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 15/47 (31%), Positives = 17/47 (36%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
QL+ R Q Q Q Q QQ QQ QQQ + Q
Sbjct: 109 QLLGGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQP 155
|
Length = 172 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 23/90 (25%), Positives = 28/90 (31%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + A E QQ Q Q Q + QQP QQ +Q Q Q
Sbjct: 370 EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
QQ +Q Q +QQ Q
Sbjct: 430 QQPYYAPAPEQPVAGNAWQAEEQQSTFAPQ 459
|
Length = 1355 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQS-QQPPHQQQQQQQQQQQQLQMQQILLQRHA-- 136
ETQ ++ Q ++ Q + S +QPP +Q + + Q A
Sbjct: 19 ETQKELSKLQLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPA 78
Query: 137 ----QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q QQ Q Q Q Q P Q Q PQQ +++
Sbjct: 79 PQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQE 119
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +Q + Q+QQ Q Q Q QQ + L + + Q + Q QQ +
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENT 842
Query: 150 QQQQQQPPQQPQQQQPQQQQQ 170
+Q + Q Q +QQQQ
Sbjct: 843 TRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQQ Q Q+ Q QQ+ + AQ+ Q+ Q + QQQ + ++Q Q+Q
Sbjct: 54 GQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQ 112
|
Length = 391 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 12/90 (13%), Positives = 63/90 (70%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
T+L+ + +Q ++Q++Q++Q++++Q+ Q +++ +++ +++L+ ++ ++ ++ +
Sbjct: 25 TRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAR 84
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ +++ +++ +++++ Q+ Q++ +Q+++
Sbjct: 85 EKEEKAKRKAEEEEKQEQEEQERIQKQKEE 114
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 99 QQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ 158
Q + QS Q + + + Q+ Q + QQ + Q +QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRR---QQNRGRQSSQPPRQQQNRSNQN 489
Query: 159 QPQQQQPQQQQQRRDGAHLLNGNT 182
+Q Q Q R G + L T
Sbjct: 490 NQRQSQGPNQGPRGQGGYNLRPRT 513
|
Length = 582 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A +Q Q QQ+ Q Q+ Q +Q +++++Q Q+L+ Q L++ Q + + Q
Sbjct: 225 AAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284
Query: 146 HQQQQQQQQQPPQQPQ------QQQPQQQQQRRDGAHLL 178
+ + +QQ Q+ Q Q+ Q Q Q + A LL
Sbjct: 285 YVRLRQQAAAT-QRGQVLAGAAQRVAQAQAQAQAQAQLL 322
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL---LQRHAQQQQ 140
I+ RE+Q Q+ + Q + +Q+ + +Q + +QQ Q Q+L QR AQ Q
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQA 313
Query: 141 QHQQQHQQQQQ-------QQQQPPQQPQQQQP 165
Q Q Q Q + ++ P++ ++Q+P
Sbjct: 314 QAQAQAQLLSSANRPAALRLRRSPRRGRRQRP 345
|
Length = 499 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 21/99 (21%), Positives = 44/99 (44%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +A + Q++ + +Q Q Q P ++ QQ Q ++ + +Q L + ++
Sbjct: 268 NVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERT 327
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+Q + + ++ Q PQ + Q +Q RR A
Sbjct: 328 RQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNALKN 366
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 18/98 (18%), Positives = 39/98 (39%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q++ + +Q +Q P + QQ Q ++L+ ++ ++ + ++
Sbjct: 276 DTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERTRQKKTRLT 335
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
++ Q P Q + Q + +Q R L N N L
Sbjct: 336 KRLTQTNPSPQILRAQTRTEQLNRRLNALKNAQANLKL 373
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q QQ + QQ QQQ PQQ PQ
Sbjct: 116 QGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161
|
Length = 172 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39
L+ I +YL++ + +A+ Q E +S
Sbjct: 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 8/111 (7%), Positives = 50/111 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ +++++ ++++ +Q + ++ ++ + + + ++ ++ Q
Sbjct: 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQN 195
++++ ++ ++ ++++ ++ R D G+ +G G R+
Sbjct: 213 DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263
|
Length = 672 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 97 QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ + + QQQ QQQQ++QQQQ++ Q Q IL Q
Sbjct: 3 RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQAILRQ 39
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ + QQQQ ++QQQQ+ +QQQQ++ Q+Q ++QIL
Sbjct: 1 IRRARLAELQQQQGGLEEQQQQE-------EQQQQEEAQKQAILRQIL 41
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 662 AVLWHTDTLKSKTN---LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLR 717
AVL HTD K +N L I DV F+P P +L T+S D T+ W G +
Sbjct: 54 AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113
Query: 718 T------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 768
GH+ V + FHP+ +++ S D + W + G V K + Q
Sbjct: 114 ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170
|
Length = 493 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
+Q +QQQQQ QQQ Q + P QQ Q QQ
Sbjct: 49 DQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQ 83
|
Length = 84 |
| >gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 85 KAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+ + + Q+Q Q +Q+ QQ + Q Q+ + ++Q QQ +Q+Q Q+ Q++ +
Sbjct: 20 ELQAELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQ------QQVEQERAKRL 73
Query: 144 QQHQQQQQQQQQ 155
+Q Q Q +Q
Sbjct: 74 EQKNQLLFQIEQ 85
|
This bacterial family of proteins has no known function. Length = 131 |
| >gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ I A E + ++ Q Q Q Q+Q Q +QQQ + + + QR A Q Q
Sbjct: 119 RQIAASEARAERLQADLQLAQAQEQ--------QVAARQQQARQEAVALEAQRQAAQAQL 170
Query: 142 HQQQHQQQQQQQQQ 155
+ Q Q +Q Q QQ
Sbjct: 171 RKLQRQIRQLQAQQ 184
|
This family of proteins has no known function. Length = 192 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 104 QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ--QQQPPQQPQ 161
Q +Q +Q Q +QQ Q+ ++ +Q+Q Q Q+Q QQ +QQ Q
Sbjct: 113 QLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQS 172
Query: 162 QQ--QPQQQQQR 171
+ Q QQQ R
Sbjct: 173 RTTEQSWQQQTR 184
|
Length = 319 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 19/119 (15%), Positives = 67/119 (56%), Gaps = 19/119 (15%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQ--------QQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
EK EVA + Q +A +++++ Q++ +++++Q+++ ++ +++++
Sbjct: 179 EKEREVAR--LRAQQEEAEDEREELDELRADLYQEEYERKERQKEK------EEAEKRRR 230
Query: 121 QQQQLQ---MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q+Q+LQ +QI + Q+++ +++ ++++ ++Q + +Q+ ++++ + H
Sbjct: 231 QKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEH 289
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 81 TQLIKAREQQQQQQQQ--QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL + E Q+QQ Q Q Q Q Q P +Q Q ++ Q+ AQQ
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQL-----AQQ 837
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+++ + + +QQ +Q QQQQ QQ
Sbjct: 838 LRENTTRQGEIRQQLKQDADNRQQQQALMQQ 868
|
Length = 1047 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
++ Q E+ ++ +QQ+ QQ+QQ+ Q +Q Q QQ+ QQ+QQ +Q I
Sbjct: 65 LQKQAATLSEEARKAKQQELQQKQQELQQKQ---QAAQQELQQKQQELLQPIY 114
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 15/80 (18%), Positives = 25/80 (31%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
Q Q Q + QQ+ QL QQ Q++ + Q Q Q + Q
Sbjct: 128 VTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQ 187
Query: 152 QQQQPPQQPQQQQPQQQQQR 171
Q + + ++
Sbjct: 188 QTDGAGDDESEALVRLREAD 207
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.003
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
+Q+ Q Q Q QQ QQ+ +QQ Q + QQQ Q Q+ QR Q Q + Q
Sbjct: 36 QQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQINNNS---QRVQQGQPGNNPARQ 92
Query: 148 QQQQQQQ--------QPPQQPQQQQPQQQQQRRD 173
Q P QQ +++ D
Sbjct: 93 QMLPNTNGGMLNSNRNPDSSLNQQHMLPERRNGD 126
|
Length = 145 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.003
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ QQ+ +QQQQ Q Q + Q+Q + +Q + Q LQ H +QQQ+ QQ
Sbjct: 6 EQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQ---LQEHIKQQQEMLAIKQQ 62
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ ++Q + Q+Q+ + ++QRR+
Sbjct: 63 QELLEKQRKLEQQRQEQELEKQRRE 87
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.003
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+K + Q +QQQQQ QQQ Q Q QQ Q Q
Sbjct: 42 VKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQ 82
|
Length = 84 |
| >gnl|CDD|197399 cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase | Back alignment and domain information |
|---|
Score = 37.4 bits (86), Expect = 0.003
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 87 REQQQQQQ----QQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
RE+Q QQ+ QQQQQ Q+Q + +Q + +Q Q Q Q+ L++QQ LL QQ+
Sbjct: 5 REKQLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHLKLQQELLAMKQQQE 64
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQ 164
++Q +QQ+Q+Q+ + ++QQ
Sbjct: 65 LLEKEQKLEQQRQEQELERHRREQQ 89
|
This family consists of the glutamine-rich domain of histone deacetylase 9 (HDAC9). It belongs to a superfamily that consists of the glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDCA9; it is missing from HDAC7. This domain confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors, and it is able to repress transcription independently of the HDAC C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 30/135 (22%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+T L QQ++Q Q Q + + Q + + Q + + AQ
Sbjct: 110 IDTVL--LEIQQEEQAAAQAQVAAGFRPKIAALTAEIAALQAEIDEAQAEVNAAYQEAQC 167
Query: 139 Q----------------QQHQQQHQQQQQQ-----------QQQPPQQPQQQQPQQQQQR 171
+ ++ +++ Q + Q Q + +Q
Sbjct: 168 EAEGTGGTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEAQKAALERNRQAAV 227
Query: 172 RDGAHLLNGNTNGLL 186
+ +GLL
Sbjct: 228 AE-KQARIEANDGLL 241
|
This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important. Length = 297 |
| >gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQ----------QQQ 120
A+ R Q+ Q+QQ Q Q S Q + Q +Q
Sbjct: 213 AALEAQLPEDLRAALQESQRQQALLQQLAQLQASGASPQELRLMRAQLVGPEAAQRLEQL 272
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ+ QQ AQ+ Q Q +Q Q Q +QQ+ Q+ R
Sbjct: 273 DQQRAAWQQRYDDYLAQRAQILNAAGLSPQDRQAQ-IAQLRQQRFSPQEALR 323
|
Length = 336 |
| >gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQ 145
Q +Q QQ + QQ +P + +QQ Q M QI L R + Q Q
Sbjct: 534 AAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLL 593
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q QQ QP Q Q Q
Sbjct: 594 SQLQQMMNNLQMGQPGQGQQMGDQS 618
|
Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model. Length = 851 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
E+ Q +Q +Q + Q+Q Q Q Q Q QQ + + L +Q QQ Q
Sbjct: 776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLA 835
Query: 148 QQQQQ----QQQPPQQPQQQQPQQQQQR 171
QQ ++ Q + QQ +Q +QQQ+
Sbjct: 836 QQLRENTTRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 89 QQQQQQQQ------QQQQQQQQQQSQQPPHQQQQQQQQQQQQL----------------Q 126
QQQQQQ + QQ+ + QQ Q +++ Q QL +
Sbjct: 238 AQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWE 297
Query: 127 MQQILLQRHAQQQQQHQQ---QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q A +QQ ++ + Q + + +Q + Q Q++
Sbjct: 298 RIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQS 347
|
Length = 1047 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K Q+ Q +QQ + + + +QQ + Q +Q Q++Q+L Q+ A +
Sbjct: 652 KQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
Query: 145 QHQQQQQQQQQ 155
+ + ++ +
Sbjct: 712 FRELRTERLAK 722
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQQQQQQQ 123
++ + + + Q AR +Q Q Q + +Q++Q + Q Q+Q Q
Sbjct: 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASAT 182
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ-----QPQQQQPQQQQQRRD 173
QL+ Q + L+ + Q +Q Q + Q + QQ Q Q+RD
Sbjct: 183 QLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ---QQQQQQQQQQQLQMQQILLQRH 135
+ +L AR+ + QQ+ + +Q Q Q Q++Q + Q Q LQ Q LQ
Sbjct: 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQAS 180
Query: 136 AQQ-----------QQQHQQQHQQQQQQQQQPPQQPQQ-QQPQQQQQRRDGA 175
A Q Q +Q+ Q + + ++ + Q+ A
Sbjct: 181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQA 232
|
Length = 499 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQ--QQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ R + E+AA +E L+ + + +Q + Q + Q ++ + + QQ
Sbjct: 26 RLGRLEQMLGELAAV-LEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQ 84
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q + Q LL + Q + Q+ + + + + QQ ++
Sbjct: 85 QLLQSREQLQLLI---ESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPL 137
|
Length = 448 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.004
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
++ K+ ++ + Q +QQQQQ Q Q P+Q + Q QQ Q QQ+
Sbjct: 36 RIFKSEVKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQV 84
|
Length = 84 |
| >gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151) | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 11/64 (17%), Positives = 41/64 (64%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
Q+ + Q+ ++++ Q +Q+++++ ++ Q ++++ L++R + +Q ++ ++ ++Q
Sbjct: 48 NQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQ 107
Query: 153 QQQP 156
+Q P
Sbjct: 108 EQIP 111
|
This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 122 |
| >gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 96 QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM---QQILLQRHAQQQQQHQQQHQQQQQQ 152
Q QQQQ + PH Q QQ + + ++ Q Q QH Q
Sbjct: 55 PQMPQQQQSAHPKLTPHHQLLILPPQQPMMPVPGHHPMVPMTGQQPHLQPPAQHPLQPTY 114
Query: 153 QQQP-PQQPQQQQPQQQQQ 170
Q P PQQP QP Q Q
Sbjct: 115 GQNPQPQQPTHTQPPVQPQ 133
|
Amelogenins play a role in biomineralisation. They seem to regulate the formation of crystallites during the secretory stage of tooth enamel development. thought to play a major role in the structural organisation and mineralisation of developing enamel. They are found in the extracellular matrix. Mutations in X-chromosomal amelogenin can cause Amelogenesis imperfecta. Length = 174 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 10/97 (10%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ + E+ + ++ + +++ ++ ++ Q +++ ++ +Q+ + L R +
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q +++ Q ++ + + + ++ ++R + A
Sbjct: 742 VEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family protein | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 113 QQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q QQ+QQ L +Q L++ + QQ Q + QQ QQQ
Sbjct: 84 QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQ 126
|
A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. Length = 239 |
| >gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 15/94 (15%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
++T+ +A QQQ + +++ Q+ + + Q Q Q+ LQ + L+ ++
Sbjct: 111 LQTRPERA---QQQLSEARRRLQEIRNRLQALSPGGTPLAQAQRTLLQAELAALKAQIEE 167
Query: 139 QQQHQQQHQQQQQ--QQQQPPQQPQQQQPQQQQQ 170
+ + +Q+ + Q+ + + ++ + + Q
Sbjct: 168 LELELLSNNNRQELLRLQRDLLKKRIERLEAELQ 201
|
The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux. Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 918 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.91 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.91 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.87 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.85 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.82 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.82 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.79 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.79 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.78 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.78 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.73 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.71 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.71 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.7 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.68 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.67 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.62 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.61 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.61 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.61 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.59 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.57 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.57 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.57 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.56 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.55 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.52 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.51 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.51 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.49 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.46 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.45 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.44 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.42 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.42 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.42 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.41 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.36 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.31 | |
| KOG4594 | 354 | consensus Sequence-specific single-stranded-DNA-bi | 99.31 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.29 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.29 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.27 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.26 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.26 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.26 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.25 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.22 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.21 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.2 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.2 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.19 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.19 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.18 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.17 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.16 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.15 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.12 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.09 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.08 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.07 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.06 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.02 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.02 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.01 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.99 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.99 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.97 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.96 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.91 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.9 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.88 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.87 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.87 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.85 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.84 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.83 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.81 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.8 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.8 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.77 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.75 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.74 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.65 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.64 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.64 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.63 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.63 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.59 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.58 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.57 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.56 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.55 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.55 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.54 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.54 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.52 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.49 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.47 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.46 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.4 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.38 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.37 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.35 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.3 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.29 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.28 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.27 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.26 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.24 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.22 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.21 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.21 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.21 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.19 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.19 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.13 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.13 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.09 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.08 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.08 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.04 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.02 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.0 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.0 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.98 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.97 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.94 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.92 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.85 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.83 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.81 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.81 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.8 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.78 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.72 | |
| PRK10115 | 686 | protease 2; Provisional | 97.7 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.67 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.65 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.63 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.6 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.56 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.54 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.53 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.48 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.45 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.42 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.38 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.3 | |
| PRK10115 | 686 | protease 2; Provisional | 97.29 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.29 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.24 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.23 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.23 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.21 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.19 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.18 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.16 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.14 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.13 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.13 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.06 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.05 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.04 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.02 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.96 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.96 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.94 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.83 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.81 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.79 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.76 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.75 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.71 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.7 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.67 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.66 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.64 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.56 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.55 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.52 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.5 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.5 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.48 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.46 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.44 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.44 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.35 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.27 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.22 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.21 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 96.14 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.14 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 96.12 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.1 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.07 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.05 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.94 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.82 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.75 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.74 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.72 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.7 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.64 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.59 | |
| PLN02153 | 341 | epithiospecifier protein | 95.56 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.33 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.31 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.3 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.28 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.18 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.11 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.11 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 95.05 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.91 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.91 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.89 | |
| PLN02193 | 470 | nitrile-specifier protein | 94.82 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.8 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.74 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 94.72 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 94.67 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 94.58 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.53 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.47 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.15 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.83 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.82 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.8 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 93.75 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.75 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.62 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.6 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 93.6 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.36 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 93.3 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.13 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 92.77 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 92.71 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.65 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 92.65 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 92.51 | |
| PLN02153 | 341 | epithiospecifier protein | 92.4 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.33 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.33 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 92.2 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.14 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.06 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.01 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 91.98 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 91.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.93 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 91.89 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.86 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 91.72 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 91.54 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.36 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 91.34 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 91.16 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 90.97 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 90.91 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 90.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 90.75 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.72 | |
| KOG2006 | 1023 | consensus WD40 repeat protein [General function pr | 90.54 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.45 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 90.44 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 90.31 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.19 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 90.18 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.75 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 89.33 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.17 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.09 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=381.43 Aligned_cols=310 Identities=26% Similarity=0.448 Sum_probs=277.0
Q ss_pred ccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 557 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 557 ~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
-++.|+|+|..+++ +.+.+|||+.+- .+..+
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~Te----------------------------------------------Tp~~t 152 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTE----------------------------------------------TPLFT 152 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCC----------------------------------------------Cccee
Confidence 47789999998887 445688987542 35677
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee-eEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEE
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVW 707 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~-~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iw 707 (918)
.++|..-|.||+|+|||+.||+|+.||+|++||.++++.+ ..|.+|...|++++|.| ..++||+++.||+|+||
T Consensus 153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence 8899999999999999999999999999999999987654 67899999999999977 57799999999999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEE-----------Eec
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMR-----------FQP 773 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~-----------~sp 773 (918)
|+.. +.++..+.+|+.+|+|++|-. ..+|++++.|++|++|+...|++.+.++++. +.++ |.+
T Consensus 233 d~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 233 DTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred EccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 9986 889999999999999999974 5589999999999999999999998887753 3333 333
Q ss_pred CCC-------------------------EEEEEEcCCeEEEEECCC-ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 002471 774 HLG-------------------------RYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSED- 826 (918)
Q Consensus 774 ~~~-------------------------~ll~~~~dg~I~i~D~~t-~~~~~~l~~h~~~V~si~~spdg~~Las~s~d- 826 (918)
.+. .+++++.|.++.+|+... .+++..+.+|..-|+.+.|+||+++|++++.|
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 333 488999999999998765 45888899999999999999999999999999
Q ss_pred eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEE
Q 002471 827 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 905 (918)
Q Consensus 827 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~L 905 (918)
.|++||.++| +.+..|.+|-..|+.++|+.|.+.|++|+.|.++++||+++.++. .+.+|.+.|.++.|+|||..+
T Consensus 390 SVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 390 SVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred ceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 9999999988 788899999999999999999999999999999999999999988 789999999999999999999
Q ss_pred EEEecCCcEEEeC
Q 002471 906 ASASHDKFVKLWK 918 (918)
Q Consensus 906 asgs~Dg~I~IWd 918 (918)
++|+.|+.++||+
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=366.14 Aligned_cols=288 Identities=23% Similarity=0.393 Sum_probs=263.3
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
.+-..+.||.+.|.|+.|+|+|++||+|+.|.++|+||+.+..+.++.++|...|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCC--CEEEEEE
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL--GRYLAAA 782 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~--~~ll~~~ 782 (918)
..++....+.+.+|...|++|+|.|- ...+|++++.||.|+|||+..+.++..+.++...+.+...| +.+++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 99988888999999999999999873 23478899999999999999999999998876655544444 6788889
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEc-----------CCC-------------------------CEEEEEeCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSG-------------------------ELLASVSED 826 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s-----------pdg-------------------------~~Las~s~d 826 (918)
.|++|++|+...|++..++++|...|+.++++ |.+ +.|++|++|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999999999999999998876 223 359999999
Q ss_pred -eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002471 827 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 904 (918)
Q Consensus 827 -~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~ 904 (918)
++.+|+-... .+++..+.+|...|+.+.|+||+++|++++.|+.|++||.++|+.+ .+.+|-..|+.++|+.|.++
T Consensus 346 ~tlflW~p~~~--kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 346 FTLFLWNPFKS--KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred ceEEEeccccc--ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 9999987533 3678889999999999999999999999999999999999999988 89999999999999999999
Q ss_pred EEEEecCCcEEEeC
Q 002471 905 VASASHDKFVKLWK 918 (918)
Q Consensus 905 Lasgs~Dg~I~IWd 918 (918)
|++|+.|.+++|||
T Consensus 424 lVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWD 437 (480)
T ss_pred EEEcCCCceEEEEE
Confidence 99999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=352.72 Aligned_cols=287 Identities=27% Similarity=0.443 Sum_probs=266.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC--CCEEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V 704 (918)
.......--+.+.+|..+.||.|++.||||+.+|.++||+..+...+.+|++|...|.++.|+|. +..||||+.||+|
T Consensus 164 ~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 164 SLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred hhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 34444555578899999999999999999999999999999999999999999999999999996 6689999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 781 (918)
++|++++ ..++..+.+|...|..++|+|+|.+| +|++.|.+-++||++++..+...++ ++.+++|.++|..+++|
T Consensus 244 klw~~~~-e~~l~~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQ-ETPLQDLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeeccCC-CcchhhhhcchhhheeeeecCCCcee-eecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999997 68899999999999999999998755 5999999999999999987765554 56789999999999999
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC-
Q 002471 782 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP- 859 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp- 859 (918)
+.|..-+|||++++.++..+.+|...|.+|.|+|+|..|++|+.| +++|||++.. .+++.+..|.+.|+.+.|+|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEeccc
Confidence 999999999999999999999999999999999999999999999 9999999876 56899999999999999998
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 860 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|.+|++++.|++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7889999999999999999999988 8999999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=325.04 Aligned_cols=291 Identities=20% Similarity=0.375 Sum_probs=265.1
Q ss_pred CccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 625 ~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
.+.++..++|++|.++|+++.|++|.++|++++.||++.|||.-+...+..+.-....|..++|+|.|+++|+|+.|...
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 44778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC--C---ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEec-CC
Q 002471 705 RVWDADNP--G---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-HL 775 (918)
Q Consensus 705 ~Iwdl~~~--~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp-~~ 775 (918)
.||++.+. . ...+.+.+|.+.+.|+.|.+| ..+ ++++.|.++.+||++++..+..|.++ +.++.+.| ++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~i-lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHI-LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCC-Cce-EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999864 1 345778999999999999985 444 49999999999999999999999865 56788899 88
Q ss_pred CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEE
Q 002471 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 854 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~ 854 (918)
+.|++++.|+..++||++.+.++.+|.+|+..|++|+|.|+|.-|++|++| ++++||++...+. .++.-......|++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-AVYSHDSIICGITS 278 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-eeeccCcccCCcee
Confidence 999999999999999999999999999999999999999999999999999 9999999986432 23333444678999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 855 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 855 i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++|+..|++|++|..|..+.+||.-.++.+ .+.+|+..|.||..+|||..|++|++|..||||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999888887 8899999999999999999999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=310.31 Aligned_cols=286 Identities=24% Similarity=0.420 Sum_probs=262.6
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
+...+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+....+++|+++|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 445677999999999999999999999999999999954 6677888999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCe
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
+++ +++++.+++|...|++++-+.-|..+|++++.||++++||+++..+++++ +.....+.|.-.+..+++++-|+.
T Consensus 119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 998 88899999999999999977778889999999999999999999999988 556788999999999999999999
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeccCCC----ceEEEEEeCC
Q 002471 787 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN----KFHSCVFHPT 860 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~-~~i~~~~~~~~----~i~~i~~sp~ 860 (918)
|++||++.....+.+.+|.+.|+.+..+++|.++.+-+.| ++++||++..... .|+..+.++.. ....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999999999999999 9999999876443 45777766543 3567899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 861 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
+.++-+|+.|+.+++||.....++ .+.+|.+.|++++|+|...+|.+++.|++|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999997766 89999999999999999999999999999986
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=328.04 Aligned_cols=273 Identities=24% Similarity=0.390 Sum_probs=250.4
Q ss_pred CCcccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCcccee
Q 002471 554 TSKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (918)
Q Consensus 554 ~~k~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~ 630 (918)
.......||.|+..+++ ++..+||+..++ ..
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~----------------------------------------------~~ 209 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQC----------------------------------------------NL 209 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCc----------------------------------------------ce
Confidence 34456788888887777 566677776533 45
Q ss_pred eeeeecCCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 631 ANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspd--g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
+.+|++|++.|.++.|+|. +..||||+.||+|++|++++..++..+.+|...|..++|+|+|++|+|+|.|.+-|+||
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 6789999999999999996 67999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCC
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg 785 (918)
+++ +..+....||...|.+|+|++||. +++||+.|..-+|||+++++++-.+.++ +..+.|+|+|-.+++|+.|+
T Consensus 290 ~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 290 LET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred ccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 998 677788889999999999999976 7889999999999999999999999875 46789999999999999999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
+++|||++...+++++.+|..-|+.|+|+| .|.+|++++.| +++||..++. .++..+.+|.++|.++.+++++.+
T Consensus 368 t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred cEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCce
Confidence 999999999999999999999999999998 77899999999 9999998776 788999999999999999999999
Q ss_pred EEEEEcCCeEEEEE
Q 002471 864 LLVIGCYQSLELWN 877 (918)
Q Consensus 864 l~s~s~dg~I~vwd 877 (918)
|++++.|++|++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=309.75 Aligned_cols=359 Identities=22% Similarity=0.352 Sum_probs=279.8
Q ss_pred cccEEEEcCCCeeec---cCCCeeEeCCCcch------------------hhhcccccccCCC-cCceeeeeccCCCCCC
Q 002471 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLEL------------------RADMDRLVEDGSL-DDNVESFLSHDDTDPR 613 (918)
Q Consensus 556 k~~~~fs~dg~~~~~---~~~~~lwd~~~~~~------------------~~~~~~~~~~gs~-d~~v~~~~~~~~~~~~ 613 (918)
--...|||.|.|+++ ++.++|||....+. ..+-.|+.+.|.- ++....|+.+.+....
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG 141 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG 141 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc
Confidence 346789999999888 55679999865221 1122334443332 2223333333222221
Q ss_pred CCCC------------------------cccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002471 614 DAGG------------------------RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 669 (918)
Q Consensus 614 ~~~~------------------------~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~ 669 (918)
+..+ ....+..+..|+...+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 1111 2344556778899999999999999999999999999999999999999999
Q ss_pred CceeeEec---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------
Q 002471 670 LKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--------------------------------- 713 (918)
Q Consensus 670 ~~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--------------------------------- 713 (918)
++.+..|. +|.+.|.+|+|+||+..|+|++.|.+++|||+.+..
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 99999998 899999999999999999999999999999997521
Q ss_pred ---------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-------------------------
Q 002471 714 ---------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------------------- 759 (918)
Q Consensus 714 ---------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~------------------------- 759 (918)
..++.+.+|...|+++..++++.+ |++|+.||.|.-||+.++..-
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 123455689999999999999865 559999999999998654210
Q ss_pred ------EEe------------------------------------------e-----------cCceEEEEecCCCEEEE
Q 002471 760 ------RVF------------------------------------------K-----------GGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 760 ------~~~------------------------------------------~-----------~~~~~v~~sp~~~~ll~ 780 (918)
+.+ . -...+++++|++..+++
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 000 0 01134678889999999
Q ss_pred EEcCCeEEEEECCCceE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 781 AAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~--~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
|+.|+.|+||.+..... ...+..|..+|++|+|+||+.||+++... .|.+||+.+... ....+.-|..+|.+++|
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAW 538 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEe
Confidence 99999999999987643 33456799999999999999999999988 999999988754 44555668999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 858 HPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|+...+++|+-|-.|.||+++..... ...+|...|+.+.|-.+ ..|++.+.|..|++|.
T Consensus 539 sP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWN 600 (603)
T ss_pred CCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEec
Confidence 999999999999999999999865433 45589999999999654 4788999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=291.68 Aligned_cols=285 Identities=21% Similarity=0.376 Sum_probs=245.2
Q ss_pred cceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECC-----CCceeeEeccCCCCeEEEEECCCCCEEEEEeC
Q 002471 627 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~-----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 700 (918)
.+....++++|++.|+.++..+. ...|++++.|++|.+|++. .|..++.+++|+..|..+..++||.+.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 34567789999999999999886 4789999999999999875 46778999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEEEEecC--
Q 002471 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPH-- 774 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~-- 774 (918)
|+++|+||+.+ ++..+.|.+|...|.+++|++|...+ ++|+.|.+|++||+...-....... -+.+++|+|.
T Consensus 84 D~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 84 DGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred cceEEEEEecC-CcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 99999999998 68899999999999999999997654 5999999999999986543333332 3689999999
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 775 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
...++.++.|++|++||+++.+....+.+|...++.++++|||.++++|+.| .+.+||++.+ +++..+. +...|.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~ 237 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVN 237 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEe
Confidence 5788889999999999999999999999999999999999999999999999 9999999877 4555544 478899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E----Eccc-----CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T----LTAH-----EGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~----~~~h-----~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+++|+|+...|+. ..+..|+|||+.++.++ . +.+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 238 sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 238 SLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999998755544 45566999999998876 2 1222 23456789999999999999999999994
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=305.00 Aligned_cols=287 Identities=23% Similarity=0.405 Sum_probs=263.3
Q ss_pred ccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
..|+..+.+.+|.+.|.||++.|...+|++|+.|++|+|||+.++.++.++.+|...|..|++++-..||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~ 782 (918)
.||++. .+.++.+.||-..|+|++.+|.-+ +|++|+.|.++||||+++...+.++.++ +..+.+.+.+..+++++
T Consensus 219 CwDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999997 788999999999999999999855 6669999999999999999999998865 56677888899999999
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
.|++|++||++.++...++..|...|++++.+|....|++++.|.|+-|++..+ ..+..+.+|...|.++....|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999999999999776 5566688889999999988776
Q ss_pred EEEEEEcCCeEEEEECCCCcEEE----Ec-----ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGCYQSLELWNMSENKTMT----LT-----AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~~----~~-----~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++++|+.+|.|.+||.+++.... .. ..+..|.+.+|+..|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 68889999999999999987651 11 2356799999999999999999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=306.74 Aligned_cols=288 Identities=26% Similarity=0.502 Sum_probs=269.4
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
.+.+...+.+|...|+.+-|+|+-.++++++.|++|++||..++++...+++|.+.|.+|+|+..|++||+++.|=.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 55778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEEecCCCEEEEEEc
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~ 783 (918)
||...-..+++.+.+|...|.+++|.|.|+++ ++|+.|.+|+.|++.++.|+++|.++. ..++...||..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 99987667889999999999999999998655 599999999999999999999998864 55667788888888889
Q ss_pred CCeEEEEECCCceEEEEecCCCCCeEEEEEcCC---------------CCEEEEEeCC-eEEEEECCCCCCcceEEEecc
Q 002471 784 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELSC 847 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd---------------g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~ 847 (918)
|.+|++|-+.++.+...++.|+-+|.+++|.|. +.++++++.| +|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999773 2489999999 9999999888 99999999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|.+.|..++|+|.|+||+++..|+++++||++.++++ .+..|+..|++++|+.+..+++||+-|-.+++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999998 7889999999999999999999999999999994
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=330.23 Aligned_cols=287 Identities=30% Similarity=0.550 Sum_probs=256.2
Q ss_pred ceeeeeeecC-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 628 FKEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 628 ~~~~~~l~~H-~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
+..+..+..| ...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|++++|++++.|++|
T Consensus 148 ~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 148 FSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred ceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence 3345556554 8999999999999999999999999999998777 777888999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 781 (918)
+|||+...+..++++.+|...|++++|+|++ .++++|+.|++|+|||++++++++.+.+ .+..++|++++..++++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 9999976678999999999999999999998 7888999999999999999999999876 46778899999999999
Q ss_pred EcCCeEEEEECCCce--EEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc---eE
Q 002471 782 AAENVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FH 853 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~--~~~~l~~h~~~--V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~---i~ 853 (918)
+.|+.|+|||+.++. ++..+.++... +++++|+|++++|++++.| .+++||+..+ .++..+..|... +.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIF 383 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEe
Confidence 999999999999999 66777776665 9999999999999999999 9999999877 556666666554 44
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEEEEEeCCCCEEEEEe--cCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h-~~~V~~la~spdg~~Lasgs--~Dg~I~IWd 918 (918)
+...++.+.++++|+.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 4456789999999999999999999987766 78899 89999999999999999998 799999996
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=284.81 Aligned_cols=266 Identities=22% Similarity=0.433 Sum_probs=239.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc-eeEEeccCCCCeeEE
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSL 729 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl 729 (918)
-+|+++++|.+||+|...+|.+.+++....+.|+.+.+.|+++.||+++. -.||+||+++... ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 48999999999999999999999999988999999999999999999985 4599999998554 799999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC-CCC
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTK 806 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~~ 806 (918)
.|..+|+. +++|++||+++|||++...+-+.|. ..+.++..+|.-..|+++..+|.|++||+.+..+...+.. ...
T Consensus 90 gF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeE-EEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999765 5599999999999999988777664 5788999999999999999999999999999877666543 456
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 002471 807 PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN- 881 (918)
Q Consensus 807 ~V~si~~spdg~~Las~s~d-~I~iwdl~s~---~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~- 881 (918)
.|.++...|||.+|+.+... +.++|++-+. .....+..+..|...+..|.++|++++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 89999999999999988877 9999999764 345677888999999999999999999999999999999999987
Q ss_pred cEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 882 KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 ~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.. .+.+|...|+.++|+.|+.||++|+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 222 7889999999999999999999999999999997
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=312.87 Aligned_cols=275 Identities=22% Similarity=0.444 Sum_probs=247.1
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|...|+++.|++++.++++|+.+|.|++|+..- ..++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence 45799999999999999999999999999988777788889999999999999999999999999999999874 3455
Q ss_pred EeccCC-CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 718 TFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 718 ~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
.+..|. ..|++++|+|++. .|++|++||+|+|||....+..+.+.+ .+.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 555555 9999999999755 556999999999999998887777766 46889999999999999999999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-CEEEEEEcCC
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQ 871 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg 871 (918)
++.|+.++.+|+..|..+.|.+++++|++++.| .+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 999999999999999999999999999999999 9999999855 6677888899999999999965 5677888999
Q ss_pred eEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 872 SLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 872 ~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|.+|.+...+.+ .-.+|+..|++++|+|-|.+||+|+.|.++++|-
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 4458999999999999999999999999999993
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=299.34 Aligned_cols=281 Identities=25% Similarity=0.485 Sum_probs=245.9
Q ss_pred eeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCC--Cceee--Eec----------cCCCCeEEEEECCCCCE
Q 002471 630 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKT--NLE----------EHSSLITDVRFSPSMPR 694 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~--~~~~~--~l~----------~h~~~V~~l~fspdg~~ 694 (918)
.++.++ |+..|.+++|+|-.. +|++|+.|-+.++|++.. ..... .|+ ..+..|++|+|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 344555 999999999999655 999999999999999863 11111 111 13467999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEE
Q 002471 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRF 771 (918)
Q Consensus 695 Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~ 771 (918)
||+|+.||.+|||+.. +..+.++..|.++|.+|.|+.+|.+++ +++.|+++.+||..++.+...|..+. ..+.|
T Consensus 250 LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 9999999999999987 678899999999999999999987665 99999999999999998877665432 44677
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCC
Q 002471 772 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
..+ ..|++++.|+.|+++.+....++.++.+|.+.|.++.|+|.|.+|+++++| +++||.+... .+++.+..|..
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk 402 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK 402 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence 654 678889999999999999999999999999999999999999999999999 9999998665 77888889999
Q ss_pred ceEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 851 KFHSCVFHPTYP---------SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 851 ~i~~i~~sp~g~---------~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|..+.|+|+|. .+++++.|++|++||+..+.++ .+..|..+|++++|+|+|+|||+|+.||.|+||+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 999999999754 5899999999999999999998 7889999999999999999999999999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=295.71 Aligned_cols=282 Identities=30% Similarity=0.566 Sum_probs=251.5
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.++++|.+.|++++|++++++|++++.||.|++|++.+++....+..|...|.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999999888889999999999999999999999999999999999987
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
...+..+..|...|.+++|++++ .++++++.||.|++||+++++....+.. .+.++.|++++..+++++.++.|+
T Consensus 83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 56677788899999999999984 5676777899999999998887777653 467889999977766666699999
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002471 789 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 867 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~ 867 (918)
+||+++++.+..+..|...|.+++|+++++.|++++.+ .|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999999988888999999999999999888888877 9999999875 5566666777899999999998888888
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 868 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 87999999999987766 6678999999999999999999999999999997
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=272.55 Aligned_cols=267 Identities=22% Similarity=0.338 Sum_probs=236.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
+.++.+++....+.|+.+.+.||+++||+++. -.||+||+.+.+ ++.+|.+|...|+.|.|..+|+.+++|++||++
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceE
Confidence 55788899988999999999999999999985 589999998654 689999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceEEEEecCCCEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ll~ 780 (918)
+|||++. -.+-+.+ .|..+|+++..+|+-..|| +|+.+|.|++||+.+..|.+.+- ..+.++.+.+++..+++
T Consensus 108 kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 108 KIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred EEEeccC-cccchhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 9999997 4444444 4789999999999977776 99999999999999887766543 35678899999999999
Q ss_pred EEcCCeEEEEECCCc------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 781 AAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~------~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
+...|..++|++-+. +++..+..|...|..+.++||+++|++++.| +++||+.++. .+....+.+|...+.
T Consensus 185 ~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvW 262 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVW 262 (311)
T ss_pred ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEE
Confidence 999999999998764 5667788999999999999999999999999 9999999865 566777888999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 899 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~s 899 (918)
.|+|+.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999987 677888887777753
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=307.76 Aligned_cols=290 Identities=19% Similarity=0.361 Sum_probs=254.0
Q ss_pred cceeeeeeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
.-+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..+++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4467888999999999999999 889999999999999999874 89999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~ 781 (918)
++||+++ +.++..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+. +.+..+.|.+++.+++++
T Consensus 283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999 66766665 456789999999998888899999999999999999888775 456788999999999999
Q ss_pred EcCCeEEEEECCCceEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC--CceEEEEE
Q 002471 782 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVF 857 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~-h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~--~~i~~i~~ 857 (918)
+.|+.|+||+.+....+..+.. +.-...+|..+|+++++++-+.| .|.||.+...-.....+.+.+|. +.-..|.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999999998866654432 33456789999999999999999 99999876554444445555553 44567889
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 002471 858 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 918 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg-~~Lasgs~Dg~I~IWd 918 (918)
+|||.+|++|..||.+.+||.++.+++ .+.+|...+..+.|+|.. ..||+|+.||.|++|+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999988 889999999999999954 4799999999999997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=297.00 Aligned_cols=287 Identities=19% Similarity=0.317 Sum_probs=241.1
Q ss_pred CccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECCCCCEEEEEeCC
Q 002471 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (918)
Q Consensus 625 ~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 701 (918)
.++..+...+..|++.|+-+.||++|+|||+++.|.+..||++.. .+.++++.+|..+|..|.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 347788889999999999999999999999999999999998763 45588899999999999999999999999999
Q ss_pred CeEEEEeCCCCCceeEEe-ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceEEEEecCCC
Q 002471 702 KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLG 776 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~ 776 (918)
..+++||+.+ +.+...+ .++...+.+++|.||+..++ +|+.|+.|..||++... ....+ ..+.++++.+||.
T Consensus 291 e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 EVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred HheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCc
Confidence 9999999998 4444433 34568999999999988766 99999999999997543 33322 2467889999999
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc--eE
Q 002471 777 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FH 853 (918)
Q Consensus 777 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~--i~ 853 (918)
++++.+.|..|++|+.++...+..+. ...+|++++.+.|++++++.-.+ .|.+||+... +.+..+.+|.-. +.
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEE
Confidence 99999999999999998876664433 45789999999999998888888 9999999743 555566665433 33
Q ss_pred EEEEe-CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 002471 854 SCVFH-PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~s-p~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg-~~Lasgs~Dg~I~IWd 918 (918)
.-+|- .+..++++|++|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+|++||+||||.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 33443 35588999999999999999999998 899999999999999955 5799999999999994
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=271.59 Aligned_cols=281 Identities=22% Similarity=0.421 Sum_probs=239.7
Q ss_pred ceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCC---CceeeEec-cCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 628 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~---~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
+.++..+.+|.++|..++|+|- |.+||+|+.|+.|+||+... ..++..+. +|...|++|+|+|.|++|++||.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4577889999999999999998 99999999999999999884 44555553 7999999999999999999999999
Q ss_pred eEEEEeCCCC-CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC---eeeEEeecC---ceEEEEecCC
Q 002471 703 TVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKGG---TAQMRFQPHL 775 (918)
Q Consensus 703 ~V~Iwdl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~---~~~~~~~~~---~~~v~~sp~~ 775 (918)
++.||.-..+ -+++.++.||...|.|++|+++|. +|++|+.|..|-||.+..+ +|...+..+ +..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 9999976542 367889999999999999999976 6779999999999999854 466666654 5678899999
Q ss_pred CEEEEEEcCCeEEEEECC---CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002471 776 GRYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~---t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
..|++++.|++|++|+.. ...++.++.+|...|.+++|++.|..|+++++| +|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999766 447899999999999999999999999999999 9999986532 11234678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc------EE--EEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 002471 852 FHSCVFHPTYPSLLVIGCYQSLELWNMSENK------TM--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~------~~--~~~~h~~~V~~la~spd-g~~Lasgs~Dg~I~IWd 918 (918)
++.+.|. ...|++++.|+.|+||...... ++ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8889998 5569999999999999766431 11 34569999999999994 67899999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=276.88 Aligned_cols=246 Identities=20% Similarity=0.327 Sum_probs=215.6
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
...++.++||...|..+..++||.+.++++.|+++++||+.+++....|.+|...|.+++|++|.+.|++|+.|++|++|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEecc--CCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEE
Q 002471 708 DADNPGYSLRTFMG--HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAA 781 (918)
Q Consensus 708 dl~~~~~~~~~~~~--h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~ 781 (918)
++.. .+..++.. +.+.|.|++|+|+. +-+|++++.|++|++||+++.+....|.++ ++.+.++|||..+++|
T Consensus 133 nt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 133 NTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred eecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 9985 44444443 37899999999985 557789999999999999999988888664 5778999999999999
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEecc---------CCCce
Q 002471 782 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC---------NGNKF 852 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~---------~~~~i 852 (918)
+.||.+.+||++.++.++.+. |...|.+++|+|+...|+.+....|+|||+.+.. ++.+++. .....
T Consensus 211 gkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred CCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccCCcEE
Confidence 999999999999999988776 7889999999998888887777799999998873 3333321 12335
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
.+++|+++|..|++|..|+.|++|.+.
T Consensus 287 lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 287 LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 678999999999999999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=300.85 Aligned_cols=288 Identities=23% Similarity=0.388 Sum_probs=253.0
Q ss_pred ccceeeeeeecCCCCeEEEEEccCCCEEEEEeCC-CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~D-g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
..+..+..+.-...+|..++|+..|.+||.|+.. |.+.||++.+...+....+|...|+|++++|||.+||||++||.|
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence 4567788888888899999999999999998855 899999999998999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceEEEEecCCCEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLA 780 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~ll~ 780 (918)
+|||..+ +.|+.+|..|+..|+.+.|+..+..++ +.+.||+|+.||+...++.++|..+ ..+++..|.|..+++
T Consensus 375 KvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~ll-ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 375 KVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLL-SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred EEEeccC-ceEEEEeccCCCceEEEEEEecCCEEE-EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 9999998 899999999999999999999876554 9999999999999999999998754 367888888888888
Q ss_pred EEcCC-eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002471 781 AAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 781 ~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
|+.|. .|.+|++.+|+.+..+.+|+++|.+++|+|++..|++++.| +||+||+-... ..+.++. ....+..++|+
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~vsfr 529 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLAVSFR 529 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeEe-eccceeEEEEc
Confidence 88876 79999999999999999999999999999999999999999 99999986431 1222222 36678999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE-EEc--------------------ccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 859 PTYPSLLVIGCYQSLELWNMSENKTM-TLT--------------------AHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~vwd~~~~~~~-~~~--------------------~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|+|+.|++++.||.|.+||+..+..+ .+. .....++.|++++||.+|++|+....|+||
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 99999999999999999999876543 111 123578999999999999999999999998
Q ss_pred C
Q 002471 918 K 918 (918)
Q Consensus 918 d 918 (918)
+
T Consensus 610 ~ 610 (893)
T KOG0291|consen 610 D 610 (893)
T ss_pred E
Confidence 5
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=287.79 Aligned_cols=274 Identities=23% Similarity=0.379 Sum_probs=251.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
+..|++++|+.+|.+||+|++||.++||+. ++..+.+|..|+++|.+|.|+.+|.||++++.|+++.|||..+ +....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEE
Confidence 467999999999999999999999999995 5778999999999999999999999999999999999999987 67777
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 794 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t 794 (918)
.+.-|..+-.+|.|-.+. -|++++.|+.|+|+.+.....+.++.+ .+.++.|.|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 888888887889998653 466999999999999998888888765 567899999999999999999999999999
Q ss_pred ceEEEEecCCCCCeEEEEEcCCC---------CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 795 QACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 795 ~~~~~~l~~h~~~V~si~~spdg---------~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
..+...+.+|...|..+.|+|+| ..+++++.| +|++||+..+ .+++.|..|..+|++++|+|+|+++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999954 468888888 9999999877 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 865 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++|+.||.|.+|++.+++++......+.|..++|+.+|.+|+.+-.|+.|++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999998888888899999999999999999999998754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=276.59 Aligned_cols=295 Identities=19% Similarity=0.267 Sum_probs=255.8
Q ss_pred CCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC
Q 002471 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (918)
Q Consensus 614 ~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~ 693 (918)
|.....|+...+ .....+.+|++.|+|+.|+.||.+||||+.+|.|+||+..++.....+......|.-++|+|.+.
T Consensus 85 DD~AflW~~~~g---e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 85 DDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred CceEEEEEccCC---cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 333445555544 37788999999999999999999999999999999999999999999987788899999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEE
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQM 769 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v 769 (918)
.|+.|+.||.|.+|.+.+ +...+.+.||..++++=+|.|+|++++ ++..||+|++||..++..+..+.. ...++
T Consensus 162 illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI 239 (399)
T ss_pred EEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence 999999999999999997 577899999999999999999988766 999999999999999988887762 35677
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEec--------CCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCC
Q 002471 770 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--------GHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 770 ~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--------~h~~~V~si~~sp---dg~~Las~s~d-~I~iwdl~s~~ 837 (918)
.+...+..++.+..++.+++....+++.+.... .+...+.||.+.| .-.++|+|+-| +|.|||+...
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~- 318 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS- 318 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-
Confidence 788888888999999999999999998888776 3444455555544 55688999999 9999999764
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
.++..-.|...|..+.|-+ ..+|++++.+|.|+.||.++|.++ .+.+|...|.+++++|+.++++|+|.|++.+|
T Consensus 319 ---~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 319 ---TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred ---hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 2333445677899999998 789999999999999999999988 89999999999999999999999999999999
Q ss_pred eC
Q 002471 917 WK 918 (918)
Q Consensus 917 Wd 918 (918)
|+
T Consensus 395 F~ 396 (399)
T KOG0296|consen 395 FE 396 (399)
T ss_pred Ee
Confidence 85
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=300.92 Aligned_cols=288 Identities=21% Similarity=0.314 Sum_probs=261.7
Q ss_pred cceeeeeeecCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 627 SFKEANSVRASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fs-pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
+++..+.+-|..+.|.+++|- |+..+||+++..+.+|+|++.+..+. .+.+|...|.+++...+|.+|+||+.|.+|+
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 667778888999999999985 57789999999999999998887766 8899999999999666788999999999999
Q ss_pred EEeCCCC---CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee------------EEeecCceEEE
Q 002471 706 VWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------RVFKGGTAQMR 770 (918)
Q Consensus 706 Iwdl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~------------~~~~~~~~~v~ 770 (918)
+|.++++ ..++....+|...|.+++++..+..+|++++.|++|++|++...+.. +.+...+++++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 9988542 23456677999999999999988999999999999999999873211 11234688999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002471 771 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 849 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 849 (918)
+.|++..+++++.|.+.+||+++......++.+|+..|.|+.|++...++++++.| +|+||.+.++ .|+.++.+|.
T Consensus 471 ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~ 547 (775)
T KOG0319|consen 471 IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHT 547 (775)
T ss_pred ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999 9999999876 8999999999
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..|..+.|-.+++.|++++.||.|+||++++++++ ++..|.+.|++++.++...+++||+.||.|.+|+
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999999999999999998 8999999999999999999999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=293.10 Aligned_cols=322 Identities=21% Similarity=0.330 Sum_probs=256.1
Q ss_pred cccEEEEcCCCeeec--cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 556 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 556 k~~~~fs~dg~~~~~--~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
-.++.|||||+..+. ++.+.||....... .. ...|...++
T Consensus 99 v~~i~fSPng~~fav~~gn~lqiw~~P~~~~-~~-------------------------------------~~pFvl~r~ 140 (893)
T KOG0291|consen 99 VGAIKFSPNGKFFAVGCGNLLQIWHAPGEIK-NE-------------------------------------FNPFVLHRT 140 (893)
T ss_pred cceEEECCCCcEEEEEecceeEEEecCcchh-cc-------------------------------------cCcceEeee
Confidence 458999999998666 44457776542210 00 116778899
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
+.+|.+.|.+|.|+.|.++|++|+.|.+++||+++..+. ...+.+|.+.|..+-|..+...|++.+.||.|.+|....
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~ 220 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDL 220 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecC
Confidence 999999999999999999999999999999999986665 667889999999999999999999999999999997761
Q ss_pred C----------------------Cce-----------eEEeccCCCCeeEEEEcC-------------------------
Q 002471 712 P----------------------GYS-----------LRTFMGHSASVMSLDFHP------------------------- 733 (918)
Q Consensus 712 ~----------------------~~~-----------~~~~~~h~~~V~sl~fsp------------------------- 733 (918)
. ++. ...+......|++.+|++
T Consensus 221 ~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~li 300 (893)
T KOG0291|consen 221 RPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI 300 (893)
T ss_pred CCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEE
Confidence 0 000 001111123455555554
Q ss_pred -----------------CCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 734 -----------------NKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 734 -----------------~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
.|+.+.+.|+.-|.+.||++.+...+....+ .+.++.++||+..+++|+.||.|+|||..
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 3343333333344555555554444444333 46789999999999999999999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCCEEEEEEcCC
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
++-|+.+|..|...|+.+.|+..|+.+++.+-| +|+.||+... ++.+++... .....|++..|.|..+++|+.|.
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence 999999999999999999999999999999999 9999999765 566666543 34578899999999999999887
Q ss_pred -eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 872 -SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 872 -~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|+||++.+|+++ .+.+|+++|.+++|+|++..|+++++|.+||+||
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 8999999999999 7899999999999999999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=305.90 Aligned_cols=275 Identities=24% Similarity=0.414 Sum_probs=240.2
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-------------------------------ceeeEecc
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEE 678 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~-------------------------------~~~~~l~~ 678 (918)
+..++..-...|+|+.|++|+++||.|..|..|++|.+... ...+++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 34444445567999999999999999999999999987621 12344678
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 679 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
|.++|..+.|+|+.++|+++|.|++||+|.+++ ..++..+.||..+|+++.|+|.| ++|+|++.|++-++|.......
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 999999999999999999999999999999998 77888899999999999999985 6778999999999999999888
Q ss_pred eEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002471 759 TRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 834 (918)
Q Consensus 759 ~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~ 834 (918)
.+.|.+ .+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||..+|.+++|+|+|++|++|++| .|.|||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 888876 46789999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred CCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE------------------------E-EEccc
Q 002471 835 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT------------------------M-TLTAH 889 (918)
Q Consensus 835 s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~------------------------~-~~~~h 889 (918)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|+.|++||+..-.. + .+...
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK 684 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK 684 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence 87 67788888999999999999999999999999999999854221 1 33444
Q ss_pred CCCeEEEEEeCCCCEEEEEe
Q 002471 890 EGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 890 ~~~V~~la~spdg~~Lasgs 909 (918)
..+|.+|.|...+..|+.|.
T Consensus 685 ~tpv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 685 NTPVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred CceEEEEEEeccceeEEecc
Confidence 56788888887775555553
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=285.94 Aligned_cols=264 Identities=22% Similarity=0.470 Sum_probs=230.8
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
...+.|+|+.+. ...+++|..|.+|+|||..+..+++.+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.+ +++
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-ge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEP 269 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-Cch
Confidence 356789999995 4489999999999999999999999999999999999995 56999999999999999998 889
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeecCc---eEEEEecCCCEEEEEEcCCeEEE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSI 789 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~I~i 789 (918)
+.++.+|...|..+.|+ +.++++|+.|.+|.+||+.... +.+++.++. ..+.|+ .+++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 99999999999999998 3477799999999999998754 334444543 444443 458889999999999
Q ss_pred EECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE
Q 002471 790 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 790 ~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s 868 (918)
|++.+++++.++.+|...|-|+.+. ++++++|+.| +|++||+..| .|+..+.+|+.-|.++.| +.+.|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRF--d~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheee--cCceeeecc
Confidence 9999999999999999999988865 8999999999 9999999888 899999999999999999 466799999
Q ss_pred cCCeEEEEECCCCcE---------E-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 869 CYQSLELWNMSENKT---------M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 869 ~dg~I~vwd~~~~~~---------~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.||+|+|||+..+.- + .+..|.+.|..+.|. ...|+++++|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999976531 2 566799999999994 45799999999999997
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=304.48 Aligned_cols=262 Identities=28% Similarity=0.468 Sum_probs=219.4
Q ss_pred cEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeeee
Q 002471 558 LMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 634 (918)
Q Consensus 558 ~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l 634 (918)
+.-|++|+..++. +..+++|.+...+++..-+ ..++..-+....|......|.. +-....++
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~------------~~~l~~~d~~sad~~~~~~D~~---~~~~~~~L 447 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD------------ASDLSNIDTESADVDVDMLDDD---SSGTSRTL 447 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccc------------hhhhccccccccchhhhhcccc---CCceeEEe
Confidence 5567777775554 5566899987543322100 0111111222222222222222 23345569
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
.+|.++|+.+.|+|+.++|++++.|++||+|.+.+..++..+++|..+|+++.|+|.|-|+||+|.|++.++|..+. ..
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~ 526 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NK 526 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
+.+.+.+|-+.|.|+.|+|+.. ++++|+.|.+||+||+.+|.+++.|.++ +.+++|+|+|.++++|+.|+.|.|||
T Consensus 527 PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred chhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 9999999999999999999965 6669999999999999999999999765 57899999999999999999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002471 792 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 836 (918)
Q Consensus 792 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 836 (918)
+.+++.+..+.+|.+.|.++.|+.||.+||+++.| +|++||+...
T Consensus 606 l~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999999999999999 9999999654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=323.04 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=238.5
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----c----eeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTV 704 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~----~----~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V 704 (918)
+..|.+.|++++|+++|++||+|+.|++|+|||+... . .+..+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 122333 356799999987 47899999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceEEEEe-cCCCEEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLAA 781 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s-p~~~~ll~~ 781 (918)
+|||+.+ +..+..+.+|...|++++|+|.+..+|++|+.||+|++||++++.++..+.. .+.++.|. +++..++++
T Consensus 558 ~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 9999987 6778889999999999999986566778999999999999999988877654 45667775 457788899
Q ss_pred EcCCeEEEEECCCce-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CcceEEEeccCCCceEEEE
Q 002471 782 AAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~-~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~---~~~~i~~~~~~~~~i~~i~ 856 (918)
+.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.| +|+|||++... ...++..+.+|...+.+++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998875 567788999999999997 67889999988 99999997542 2356788889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE--------------EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~~~~~~--------------~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|++++.+|++|+.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998755322 1123556799999999999999999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=297.64 Aligned_cols=349 Identities=21% Similarity=0.352 Sum_probs=265.6
Q ss_pred EEEEcCCCeeec--cCCCeeEeCCCcchhhhcccccccCCCcCceeee-eccCCC----CCCCCCCcccccccCccceee
Q 002471 559 MMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFSFKEA 631 (918)
Q Consensus 559 ~~fs~dg~~~~~--~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~~~~----~~~~~~~~~~d~~~~~s~~~~ 631 (918)
+.|+++|..+++ .+.+.+-|+.++... +. ....+ .++.+.++ +.+|+. ..+....+.|.+..+ +.+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~--l~-s~~~e-d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg---k~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA--LP-SGSNE-DEDEITALALTPDEEVLVTASRSQLLRVWSLPTG---KLI 97 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee--cc-cCCcc-chhhhheeeecCCccEEEEeeccceEEEEEcccc---hHh
Confidence 789999998887 333456788877652 11 11111 11222222 333321 122334466666655 778
Q ss_pred eeeec-CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEe
Q 002471 632 NSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWD 708 (918)
Q Consensus 632 ~~l~~-H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwd 708 (918)
+.++. |+++|.-++|+|.|.+|++|+.|+.|+|||+..+.+...|++|.+.|..+.|+|+-. .|++|..|+.|++||
T Consensus 98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred HhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 88887 999999999999999999999999999999999999999999999999999999654 589999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--------------------------
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------------------------- 762 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------------------------- 762 (918)
+.+...++.++..|.+.|+++.|.+++..++ +++.|..|.|||+...++.+++
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 9976667888999999999999999977666 8888999999997543211110
Q ss_pred --------------------ecC----c------------------------------------------eEEE------
Q 002471 763 --------------------KGG----T------------------------------------------AQMR------ 770 (918)
Q Consensus 763 --------------------~~~----~------------------------------------------~~v~------ 770 (918)
... . ..++
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 000 0 0000
Q ss_pred ----------------------------------Ee--cCCCEEEEEEcCCeEEEEECCCce------------------
Q 002471 771 ----------------------------------FQ--PHLGRYLAAAAENVVSILDAETQA------------------ 796 (918)
Q Consensus 771 ----------------------------------~s--p~~~~ll~~~~dg~I~i~D~~t~~------------------ 796 (918)
.. ..+-.+++++.|.++++|.++++.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 00 112244555556666666432100
Q ss_pred ----------------------------------EEE----EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002471 797 ----------------------------------CRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 797 ----------------------------------~~~----~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~ 837 (918)
.+. +...|...|+|++++|+.++|++|+.| +.+||++..
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-- 494 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-- 494 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--
Confidence 000 123577888999999999999999999 899999974
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
......+.+|...|.++.|++....+++++.|++|+||.+.+..++ ++.+|...|..+.|-.+++.|++|+.||.|+|
T Consensus 495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 4788999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred eC
Q 002471 917 WK 918 (918)
Q Consensus 917 Wd 918 (918)
|+
T Consensus 574 Wn 575 (775)
T KOG0319|consen 574 WN 575 (775)
T ss_pred Ee
Confidence 96
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=262.54 Aligned_cols=243 Identities=24% Similarity=0.437 Sum_probs=218.3
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC------ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 703 (918)
.+..+.-....|..++|+|.|+++|+|+-|+...||++.+. +..+.+.+|.+.+.|+.|.. ...|+|++.|.+
T Consensus 89 K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~T 167 (343)
T KOG0286|consen 89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMT 167 (343)
T ss_pred ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCce
Confidence 34445556778999999999999999999999999999854 45677899999999999997 458999999999
Q ss_pred EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEE
Q 002471 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLA 780 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~ 780 (918)
+.+||+++ +..+..|.+|.+.|.+|++.|...+.+++|+-|+..++||++.+.++..|.++ +..++|.|++.-|++
T Consensus 168 CalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 168 CALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred EEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 99999998 88899999999999999999955566779999999999999999999999864 678999999999999
Q ss_pred EEcCCeEEEEECCCceEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 781 AAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~--h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
|+.|++.++||++....+..+.. ...+|++++|+..|++|++|..| ++.|||.-.+ +.+..+.+|++.|.++..
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGV 323 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEE
Confidence 99999999999999887777653 34579999999999999999988 9999999766 677888899999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEE
Q 002471 858 HPTYPSLLVIGCYQSLELWN 877 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vwd 877 (918)
+|||..+++|+.|..|+||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=290.94 Aligned_cols=282 Identities=21% Similarity=0.386 Sum_probs=258.3
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
..+++..|+++|.||.|+|...+++++-+.|.|.|||.++...++.+.....+|++..|-...++|++|++|..||||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeecC---ceEEEEecCC-CEEEEEEcC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG---TAQMRFQPHL-GRYLAAAAE 784 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~---~~~v~~sp~~-~~ll~~~~d 784 (918)
.+ ...+..|..|.+.|.||+.+|...++| ++++|-+|++||.+.+ .|..+|.++ +.+++|.|.+ +.+++++-|
T Consensus 85 nt-~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 85 NT-GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cc-ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 98 788999999999999999999987665 9999999999999876 677888876 4678899977 568888889
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg--~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
++|+||.+....+.+++.+|...|+||+|-+.| .+|++|++| +|+|||..+. .|+.++.+|...|..+.|+|.-
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCC
Confidence 999999999999999999999999999999855 499999999 9999999876 8999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 862 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 862 ~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
+.|++|++||+|+||+..+-+.. ++.-..+.|+|++-.+.++.|+.|.+.|.|.|
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999988776 56667789999999999999999998888764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=256.65 Aligned_cols=280 Identities=19% Similarity=0.326 Sum_probs=239.0
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
-+....+..|.++|.++.|+-||+|.++++.|++|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+|
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEee---cCceEEEEecCCCEEEEEE
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~---~~~~~v~~sp~~~~ll~~~ 782 (918)
|+.+ ++.++.|.+|.+.|+.+.|+.+. .++++|+.|..|++||.++.. .+..+. ..+.++. -.+..+++|+
T Consensus 87 DV~T-Gkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--v~~heIvaGS 162 (307)
T KOG0316|consen 87 DVNT-GKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--VAEHEIVAGS 162 (307)
T ss_pred Eccc-CeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--ecccEEEeec
Confidence 9998 88999999999999999999874 577799999999999998764 444443 3344444 4457899999
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce--EEEEEeC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF--HSCVFHP 859 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i--~~i~~sp 859 (918)
.||+++.||++.+.......+ .+|+|++|++|++.+++++.| +|++.|-.++ +.+..+++|.+.- ..|++..
T Consensus 163 ~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred cCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecc
Confidence 999999999999987766554 679999999999998889988 9999999888 5666666766543 3556777
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC-eEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 860 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~-V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
....++.|++||.|++||+...+.+ .+..+... |.+++++|....|+++.. +.+.+|
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 7889999999999999999999888 56666666 789999998877777754 445555
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-31 Score=271.17 Aligned_cols=242 Identities=27% Similarity=0.526 Sum_probs=222.3
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
..+++|++.|.+|+|+..|++||+++.|=.+++||.++ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 45789999999999999999999999999999999986 78889999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCC------------
Q 002471 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHL------------ 775 (918)
Q Consensus 711 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~------------ 775 (918)
+ +.++.++.+|...|..++.+.|| .++++|+.|.+|++|-+.++.|...+. ..+.+++|.|..
T Consensus 224 t-g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 224 T-GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred c-ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 8 89999999999999999999885 588899999999999999996655444 456777766531
Q ss_pred ---CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002471 776 ---GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 776 ---~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
..+.+++.|++|++||+.++.++.++.+|...|+.++|+|.|+||+++.+| +++|||+++. .|.+.+..|..-
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hf 378 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHF 378 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcce
Confidence 367778889999999999999999999999999999999999999999999 9999999876 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 852 FHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
++++.|+.+..++++|+-|..+++|..
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999975
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=288.23 Aligned_cols=279 Identities=23% Similarity=0.403 Sum_probs=254.5
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.++.+|...|++++||.|...+++|+ .+.|+||+.++.++++++... .+.|..|.|.++++++|...|.+.|||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 35679999999999999988888775 669999999999999999754 899999999999999999999999999997
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-----e----------eeEEeecCceEEEEecCCC
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----S----------CTRVFKGGTAQMRFQPHLG 776 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~----------~~~~~~~~~~~v~~sp~~~ 776 (918)
...+.+...|.+.|++|+.+||+..++ +++.|.+|++||..-- . ..-.+...+.++.++|++.
T Consensus 444 -~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 -ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred -hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 677888889999999999999988766 9999999999997521 1 1122345778999999999
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEE
Q 002471 777 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 855 (918)
Q Consensus 777 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 855 (918)
+++++--|++|+||-+.+.+....+.||.-+|.|+..+||++++++|+.| +|+||-+.-| .|-+.+..|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 99999999999999999999999999999999999999999999999999 9999999766 7888899999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 856 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|-|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999988877 8999999999999999999999999999999994
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=282.22 Aligned_cols=341 Identities=20% Similarity=0.322 Sum_probs=258.7
Q ss_pred CCCeeecc--CCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCC-----CCCCCCcccccccCccceeeeeeec
Q 002471 564 DGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD-----PRDAGGRGMDVSQGFSFKEANSVRA 636 (918)
Q Consensus 564 dg~~~~~~--~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~-----~~~~~~~~~d~~~~~s~~~~~~l~~ 636 (918)
.|.+.+.+ ..+-+||+++|+....+-.... ...+.+.+..++.. ..|+.++.|+.... ....++.+
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~----k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tfng 105 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTGEIEKKLILLKK----KAEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITFNG 105 (888)
T ss_pred CCcEEEEeccccEeEEeeecchhhhhhhhhcc----cceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeeecc
Confidence 36666653 3446799999977665433111 12344445544433 35666777776654 67888999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
|...|+++.|+..|.+||+||.|+.|.|||+-...-...+++|++.|+..-|..+.++|+++|.|+.|++||+++ ..|+
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t-qhCf 184 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET-QHCF 184 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccc-ceee
Confidence 999999999999999999999999999999998888999999999999999999889999999999999999998 7888
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC-----------------------------------Ce---e
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----------------------------------GS---C 758 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-----------------------------------~~---~ 758 (918)
.+...|.+.|+.+++.+ .++++++.|+.+++|++.. .+ |
T Consensus 185 ~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c 261 (888)
T KOG0306|consen 185 ETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVC 261 (888)
T ss_pred eEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEE
Confidence 88889999999999986 3566888899999998710 00 0
Q ss_pred -------------------------------------------------------------eEEe---------------
Q 002471 759 -------------------------------------------------------------TRVF--------------- 762 (918)
Q Consensus 759 -------------------------------------------------------------~~~~--------------- 762 (918)
++.+
T Consensus 262 ~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l 341 (888)
T KOG0306|consen 262 QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL 341 (888)
T ss_pred ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe
Confidence 0000
Q ss_pred ----------e------------------c---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEE------------
Q 002471 763 ----------K------------------G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL------------ 799 (918)
Q Consensus 763 ----------~------------------~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~------------ 799 (918)
. + .+..++++. ...+++.+..+.|.||+..+.+|++
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~F 420 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSILLASGAGESIKIWNRDTLKCIRTITCGYILASKF 420 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-CceeeeecCCCcEEEEEccCcceeEEeccccEEEEEe
Confidence 0 0 000111111 1233333445566666666554444
Q ss_pred ----------------------------EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----CcceE---
Q 002471 800 ----------------------------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-----EGECV--- 842 (918)
Q Consensus 800 ----------------------------~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~-----~~~~i--- 842 (918)
++.+|++.|.+++.+||++.+++++.| +|++||+.--. ..+.+
T Consensus 421 vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 421 VPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred cCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 356788999999999999999999999 99999984321 11111
Q ss_pred --EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 843 --HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 843 --~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
..+ .-...|.|+.++||+++|+++--|.+|+||-+++-+.. .+.+|.-+|.|+.++||+++|+|||.|..|+||
T Consensus 501 ~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 501 HTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 111 12567899999999999999999999999999998877 899999999999999999999999999999999
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=270.87 Aligned_cols=277 Identities=25% Similarity=0.435 Sum_probs=244.7
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec--------cCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~--------~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
+..+-+.|..|||||.||++|+.||-|.|||..+|+..+.++ -+..+|.|++|+.|...||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 345668899999999999999999999999999998776654 478899999999999999999999999999
Q ss_pred eCCCCCceeEEec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEEecCCCEEEEEEc
Q 002471 708 DADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 708 dl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~ 783 (918)
.+.+ +.|++.|. .|+..|+|+.|+.|+..++ +++.|-+|++.-+++|++++.|+++. +...|.++|.++++++.
T Consensus 291 ri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9998 77887776 8999999999999988777 99999999999999999999999864 56789999999999999
Q ss_pred CCeEEEEECCCceEEEEecC--CCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEec---cCCCceEEEE
Q 002471 784 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELS---CNGNKFHSCV 856 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~--h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~---~~~~~i~~i~ 856 (918)
||+|++|+..+.+|+.+++. .+.+|.++...|... .+++|... +|+|.++.. ..++.+. ..++.+.+++
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence 99999999999999988874 456788888888554 66666666 999998853 3444443 3456788999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999987 7889999999999999999999999999999996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=260.18 Aligned_cols=278 Identities=22% Similarity=0.321 Sum_probs=246.9
Q ss_pred eeecCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 633 SVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 633 ~l~~H~~~V~~l~fsp---dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
+-.+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.+|.+|.+.|+...++.+..+-|+++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4568999999999986 8999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeecCceEEEEecCCCEEEEEEcCC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~sp~~~~ll~~~~dg 785 (918)
-+ +..+..|. |..-|.+++|+.|..+|| +|+.+..+||||++..+. +.-..+.+..+.|...+..+++++.|+
T Consensus 89 ~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98 56666665 888999999999987766 999999999999987642 233345677888999999999999999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 865 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~ 865 (918)
+|++||.++++.+.++. ...+|+++.++++|++|.++....|++||..+. ..++.++. ...|.+...+|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceEE
Confidence 99999999999999887 567899999999999998888889999999776 44444433 56788999999999999
Q ss_pred EEEcCCeEEEEECCCCcEE-E-EcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 866 VIGCYQSLELWNMSENKTM-T-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 866 s~s~dg~I~vwd~~~~~~~-~-~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|+.|..++.||+.+++.+ . ..+|.++|.|+.|+|+|...++|+.||+|+||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988 4 379999999999999999999999999999993
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=253.07 Aligned_cols=280 Identities=19% Similarity=0.275 Sum_probs=248.1
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEe
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~--l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwd 708 (918)
+.+++|...|.+|+|+.+|..|++|+.|++++||+++..+.... .++|.+.|-.++|+| ....|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 66789999999999999999999999999999999987655443 568999999999998 466899999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCe
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
++. ++++.......+.|. +.|+|+|.+++ .++.|..|.+.|.++.+.+..+ +..+..+.|+.++..|+.....|.
T Consensus 94 ~r~-~k~~~~i~~~~eni~-i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRS-GKCTARIETKGENIN-ITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred ecc-CcEEEEeeccCcceE-EEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998 666666665555555 88999987655 8999999999999998877654 456777889988888888888899
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEE
Q 002471 787 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 865 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~ 865 (918)
|.|......+++..++.|.....||.|+|+|++||+|+.| .+.+||+. +..|++.+..+..+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~---ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD---ELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh---HhhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999 99999995 4488888988999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC---------CcEEEe
Q 002471 866 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD---------KFVKLW 917 (918)
Q Consensus 866 s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D---------g~I~IW 917 (918)
++++|..|-|=++.+|..+.-..+.++...++|+|...+||.+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988865 566665
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=280.08 Aligned_cols=258 Identities=25% Similarity=0.438 Sum_probs=223.6
Q ss_pred CCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCE
Q 002471 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPR 694 (918)
Q Consensus 616 ~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~ 694 (918)
......++++.+|.....+.+|...|+++.|+++|.++++|+.+|.|++|+..-.. ++.+.. |...|++++|+|+...
T Consensus 116 ~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDsk 194 (464)
T KOG0284|consen 116 QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSK 194 (464)
T ss_pred ccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCce
Confidence 33455666777888888899999999999999999999999999999999976443 444554 5599999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEE
Q 002471 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRF 771 (918)
Q Consensus 695 Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~ 771 (918)
++++++||+|+|||... .+.-+.+.+|.-.|.+++|+|.. .+|++++.|..|++||.+++.|+.++.+ .+..+.|
T Consensus 195 F~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f 272 (464)
T KOG0284|consen 195 FLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKF 272 (464)
T ss_pred eEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEE
Confidence 99999999999999987 55667779999999999999984 5788999999999999999999987655 4567889
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002471 772 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNG 849 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 849 (918)
.+++++|++++.|..+++||+++.+.++++++|+..|+++.|+|-. .+|++|+.| .|..|.+...+ .....-..|.
T Consensus 273 ~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd 350 (464)
T KOG0284|consen 273 NPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHD 350 (464)
T ss_pred cCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccc
Confidence 9999999999999999999999999999999999999999999954 488888888 99999987332 2222334678
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
..|++++|+|-|..|++|+.|.++++|.-
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeecc
Confidence 89999999999999999999999999965
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=268.82 Aligned_cols=282 Identities=21% Similarity=0.392 Sum_probs=245.2
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEeCC----C
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----K 702 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g 702 (918)
..+..+.+|...|+-..|||.|.|+|+|...|+|||||... .-++.++....++|.+|.|+.|+++|++.++. |
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 34667789999999999999999999999999999999764 34456677889999999999999999888763 3
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 779 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll 779 (918)
.+.+||. +..+-.+.+|...|++++|-|....-+++|++|++|.+|+-.-.+...++.. -+.+++|+|++.+|+
T Consensus 130 ~~F~~DS---G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 130 HVFLWDS---GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred EEEEecC---CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 4566664 4567889999999999999999999999999999999998766555555443 468899999999999
Q ss_pred EEEcCCeEEEEECCCceEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---Cce
Q 002471 780 AAAAENVVSILDAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKF 852 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~---~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---~~i 852 (918)
+++.||.|.|||-.+++.+..+. +|.+.|.+++|+||+..|++++.| +++|||+.+. .++.++.... ...
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~---slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN---SLVSTWPMGSTVEDQQ 283 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc---ceEEEeecCCchhceE
Confidence 99999999999999999999998 799999999999999999999999 9999999877 6666665433 334
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..|.|. ...|++.+.+|.|.+++......+ .+.+|...|++++.++++++|++|+.||.|.-|+
T Consensus 284 vG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 284 VGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 566776 567999999999999999998866 7889999999999999999999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=249.78 Aligned_cols=279 Identities=16% Similarity=0.257 Sum_probs=237.6
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.+.+|..+|+-|.|+.+|.+|++++.|.++.||-..+++.+-++.+|.+.|+|++..-+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEe----CCCcEEEEEcCC-------CeeeEEee---cCceEEEEecCCCEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINN-------GSCTRVFK---GGTAQMRFQPHLGRY 778 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwdl~~-------~~~~~~~~---~~~~~v~~sp~~~~l 778 (918)
++++..++ ...+|..+.|+.+|..++++.. ..+.|.++|++. .++...+. ..+..+.|.+.+..+
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 67777776 5678999999999876665442 347899999983 34344443 356678899999999
Q ss_pred EEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 779 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
++|..+|.|.+||++++ +.+.....|...|+.+.+++|..++++++.| +-++||+++. .+++++.. ..+|++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 5566667899999999999999999999999 9999999876 56666654 78899999
Q ss_pred EeCCCCEEEEEEcCCeEEE--EECCCC------------cEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 857 FHPTYPSLLVIGCYQSLEL--WNMSEN------------KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~v--wd~~~~------------~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
++|...+++.|+.-...-| -+.+.+ +.+ .+.+|-++|++++|+|+|+..++|++||.|||.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999998888876543222 222333 223 678999999999999999999999999999984
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=272.94 Aligned_cols=243 Identities=23% Similarity=0.365 Sum_probs=219.8
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.++.++-..-+|+++.|-...+++++|+.|..|+||+..+++.++.|+.|.+.|+||+.+|...+++++|+|-+|++||.
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 44555566778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCC--CEEEEEEcC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAAAAE 784 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~--~~ll~~~~d 784 (918)
+..-.+..+|.||+..|.+|+|.|.+.+.+++|+-|++|+||.+....+..++++ ++.++++.+.+ .++++|+.|
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 9988899999999999999999999999999999999999999999998888876 56788887755 589999999
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
.+|+|||..+..|+.++.+|...|..++|+|.-.+|++|++| +||||...+. +....+.-....++|++..+.+..
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGK 283 (794)
T ss_pred ceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCe
Confidence 999999999999999999999999999999999999999999 9999998776 445556666788999999998888
Q ss_pred EEEEEcCCeEEE
Q 002471 864 LLVIGCYQSLEL 875 (918)
Q Consensus 864 l~s~s~dg~I~v 875 (918)
+++|...|.|.|
T Consensus 284 i~vG~Deg~i~v 295 (794)
T KOG0276|consen 284 IAVGFDEGSVTV 295 (794)
T ss_pred EEEeccCCcEEE
Confidence 888777665543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=284.36 Aligned_cols=282 Identities=22% Similarity=0.388 Sum_probs=251.4
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.++..+..|..++|+|.-.+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...++++|++|-.|+||+..+
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-
Confidence 3556678899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEEecCCCEEEEEEcCCeEEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSI 789 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~I~i 789 (918)
.+++.++.||-+.|..+.|++.-..+| ++++|-+|+||++.+.+|+..+.++. .|..|+|....+++++-|-+|+|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 889999999999999999999877666 99999999999999999999998864 66779999999999999999999
Q ss_pred EECCCc-----------------------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc
Q 002471 790 LDAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 839 (918)
Q Consensus 790 ~D~~t~-----------------------------~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~ 839 (918)
||+... -..+.+++|...|+-++|+|.-.+|++|++| .|++|.+...+ .
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-a 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-A 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-c
Confidence 997421 1234678999999999999999999999999 99999996543 2
Q ss_pred ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 840 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
-.+.+..+|.+.|.++.|||....|++.++|++|+|||+...+.+ ++....+..++++.+|..+++++| +|+-+.||+
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFk 319 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFK 319 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEE
Confidence 455677889999999999999999999999999999999999888 676777889999999999887766 555565653
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=258.43 Aligned_cols=286 Identities=19% Similarity=0.273 Sum_probs=243.2
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.+.+|..|++.|.+|+.+|+.+++|||+.|..-.||++.++.....+.+|++.|+|+.|+.+|.+||||..+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCe
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~ 786 (918)
.+ +.....+......|.-++|+|.+ .+|++|+.||.|.+|.+.++...+.+.++ .++-.|.|+|++++++..||+
T Consensus 136 st-g~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 ST-GGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cc-CceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98 55555555566778889999975 56679999999999999998878888765 455679999999999999999
Q ss_pred EEEEECCCceEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEE-----EeccCC---CceEEEE
Q 002471 787 VSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH-----ELSCNG---NKFHSCV 856 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h-~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~-----~~~~~~---~~i~~i~ 856 (918)
|++|+..++.+++.+... .....++.++..+..++.|+.+ .+++....+++...+.. ....+. ..|..+.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 999999999999888742 3457788888889999999888 78887777663222222 001222 2344555
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|+..-+..++|+-||+|.|||+...++.....|...|..+.|.+ ..+|++++.||.|++||
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 66677889999999999999999999999999999999999998 77999999999999997
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=289.11 Aligned_cols=245 Identities=30% Similarity=0.486 Sum_probs=218.2
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC-CCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~-~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
+...+.+|...|++++|+||+++|++++.|++|+|||+ ..++.++++++|...|++++|+|++++|++|+.|++|+|||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 34455889999999999999999999999999999999 56799999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEeec-----CceEEEEecCCCEEEEE
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~~-----~~~~v~~sp~~~~ll~~ 781 (918)
+++ +.+++.+.+|...|++++|.+++..+ ++++.|+.|+|||+.++. ++..+.. .+..+.|+|++.+++++
T Consensus 275 ~~~-~~~~~~l~~hs~~is~~~f~~d~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 275 VRT-GECVRKLKGHSDGISGLAFSPDGNLL-VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred ccC-CeEEEeeeccCCceEEEEECCCCCEE-EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 998 89999999999999999999997755 577889999999999999 5555532 35778899999999999
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCC---eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEE
Q 002471 782 AAENVVSILDAETQACRLSLQGHTKP---IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCV 856 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~h~~~---V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~ 856 (918)
..|+.+++||+..+.++..+.+|... +.+..+++.+.++++++.| .|++||+.++ ..+..+..| ...+..+.
T Consensus 353 ~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~ 429 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLS 429 (456)
T ss_pred cCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccc
Confidence 99999999999999999999998875 4444567789999999999 9999999875 566677777 78899999
Q ss_pred EeCCCCEEEEEE--cCCeEEEEECC
Q 002471 857 FHPTYPSLLVIG--CYQSLELWNMS 879 (918)
Q Consensus 857 ~sp~g~~l~s~s--~dg~I~vwd~~ 879 (918)
+++...++++++ .|+.|++|...
T Consensus 430 ~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 430 SHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999998 68899999764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=269.74 Aligned_cols=289 Identities=20% Similarity=0.282 Sum_probs=245.6
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
.-.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 334566788999999999999998999999999999999987555 778888999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcC
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~d 784 (918)
++|+++. .....++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++.....+..+......++++-.|
T Consensus 244 r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~D 321 (459)
T KOG0288|consen 244 RLWNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFD 321 (459)
T ss_pred eeeeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccc
Confidence 9999997 7788999999999999999876554 6699999999999999999998876555554444445667778889
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec-cCCCceEEEEEeCCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYP 862 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~-~~~~~i~~i~~sp~g~ 862 (918)
+.|++||+++..+..+...+. .|+++..++++..|.+++.| ++.+.|+++.....+..... .....++.++|+|++.
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred cceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 999999999999999988765 89999999999988888888 99999999874322221110 1133478899999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEE-EEcc-cCC-CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGCYQSLELWNMSENKTM-TLTA-HEG-LIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~-~~~~-h~~-~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|+++|+.||.|+||++.++++. .+.. +.. .|++++|+|.|.+|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999988 3333 322 699999999999999999999999994
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=266.59 Aligned_cols=292 Identities=16% Similarity=0.217 Sum_probs=235.8
Q ss_pred CccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeeEec-cCCCCeEEEEECCCCCEEEEEe
Q 002471 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLE-EHSSLITDVRFSPSMPRLATSS 699 (918)
Q Consensus 625 ~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~----~~~~~l~-~h~~~V~~l~fspdg~~Lasgs 699 (918)
.+.......+.+|+..|.++++.|.|.+|++|+.|.+|++||+... +..+.+. .....|.++.|++.+..|++.+
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 3456677789999999999999999999999999999999998732 2222222 3456799999999999999999
Q ss_pred CCCeEEEEeCCCCCcee------------EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEee---
Q 002471 700 FDKTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK--- 763 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~~~~~------------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~~--- 763 (918)
....++|+|-+. ...+ ...+||...++|.+|+|+....|++|+.||++||||+...+. +.+++
T Consensus 234 g~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 234 GSAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred cCcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 889999999874 2222 233589999999999999988899999999999999987542 23332
Q ss_pred -----cCceEEEEecCCCEEEEEEcCCeEEEEECCCce---EEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002471 764 -----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA---CRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWT 832 (918)
Q Consensus 764 -----~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~---~~~~l~~h~~--~V~si~~spdg~~Las~s~d-~I~iwd 832 (918)
..+..++|++++..|++++.||.|.+||..... ..+.-..|.. .|+||.|++||++|++-+.| ++++||
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 245778999999999999999999999976542 2233346777 89999999999999999988 999999
Q ss_pred CCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEE
Q 002471 833 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 905 (918)
Q Consensus 833 l~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~------dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~L 905 (918)
++..++...+..--.....-+.|+|+|+.+.|++|.. .+.+++||..+...+ .+......|..+.|+|.-+.|
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI 472 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhe
Confidence 9987543333332333456788999999999999865 358999999998877 666668889999999998889
Q ss_pred EEEecCCcEEEe
Q 002471 906 ASASHDKFVKLW 917 (918)
Q Consensus 906 asgs~Dg~I~IW 917 (918)
+.|+.||.++||
T Consensus 473 ~~gsgdG~~~vy 484 (641)
T KOG0772|consen 473 FAGSGDGTAHVY 484 (641)
T ss_pred eeecCCCceEEE
Confidence 999999999986
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=259.46 Aligned_cols=242 Identities=22% Similarity=0.443 Sum_probs=222.6
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEE
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 749 (918)
.+..+.+.+|.+.|.||++.|-+.+|++|+.|++|+|||+.+ +....++.||...|..+++++...++| +|+.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCeeE
Confidence 456677889999999999999999999999999999999998 888899999999999999999877666 999999999
Q ss_pred EEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002471 750 YWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 826 (918)
Q Consensus 750 iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d 826 (918)
.||++..+.++.+.++ +.++..+|....+++++.|.+++|||+++...++.+.+|..+|.++.+.|...-+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 9999999999998875 5678889999999999999999999999999999999999999999999988899999999
Q ss_pred -eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002471 827 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 904 (918)
Q Consensus 827 -~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~ 904 (918)
+|++||++.+ +....+..|...+.+++.+|....|++++.| .|+-|++..+..+ .+.+|...|++++...|+ +
T Consensus 299 ~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 299 STVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred ceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 9999999987 6677888889999999999998877777765 6999999999887 788999999999998887 7
Q ss_pred EEEEecCCcEEEeC
Q 002471 905 VASASHDKFVKLWK 918 (918)
Q Consensus 905 Lasgs~Dg~I~IWd 918 (918)
+++|++.|.|.+||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 88999999999997
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=263.20 Aligned_cols=272 Identities=21% Similarity=0.407 Sum_probs=227.9
Q ss_pred CceeeeeccCC---CCCCCCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE
Q 002471 599 DNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN 675 (918)
Q Consensus 599 ~~v~~~~~~~~---~~~~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~ 675 (918)
+.|.+.-..|+ .+.+|..+++||.. +..+...+.||++.|.|+.|. .+.|++|+.|.+|+|||+.+++++.+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n---~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKN---SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccc---cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence 44444433333 34455555666554 667888999999999999995 55999999999999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 002471 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (918)
Q Consensus 676 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl 753 (918)
+.+|...|..+.|+ +.++++++.|.+|+|||+..+. .+.+.+.||...|+.+.|.. .+|++++.|.+|++|++
T Consensus 273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWST 347 (499)
T ss_pred HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEec
Confidence 99999999999997 4499999999999999998754 23467889999999999973 37889999999999999
Q ss_pred CCCeeeEEeecCceEEEEecC-CCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 002471 754 NNGSCTRVFKGGTAQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 831 (918)
Q Consensus 754 ~~~~~~~~~~~~~~~v~~sp~-~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iw 831 (918)
.++++++++.++...+++.-. +..+++|++|.+|++||++.|.++..+++|+.-|+||.|+ .+.+++|..| +|+||
T Consensus 348 st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 425 (499)
T ss_pred cceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEE
Confidence 999999999988777665544 4556667789999999999999999999999999999997 6789999999 99999
Q ss_pred ECCCCCCc------ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 832 TVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 832 dl~s~~~~------~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
|+..+... .|+..+..|.+.|..+.|. ...|++++.|.+|.|||+..+...
T Consensus 426 dl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 426 DLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 99876433 3677777888899999984 557999999999999999877544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=245.10 Aligned_cols=284 Identities=20% Similarity=0.308 Sum_probs=239.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC--CCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~V 704 (918)
+++..+.++.-.+.|+++.|+.+|.+|++++.|.+|+|||..+++.++++..++..|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45566777778899999999999999999999999999999999999999999999999999888778777776 8999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-CceEEEEecCCCEEEEEEc
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~v~~sp~~~~ll~~~~ 783 (918)
|.-++.+ .+.++.|.||...|++|+.+|-++.+ ++++.|++|++||++..+|...+.. +...++|.|.|-.++++..
T Consensus 83 ryLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~F-lS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDTF-LSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeec-CceEEEcCCCCceEEEEEecCCCCeE-EecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence 9999998 88899999999999999999997654 5999999999999999998887764 4566789999888888887
Q ss_pred CCeEEEEECCCc--eEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---CceEE
Q 002471 784 ENVVSILDAETQ--ACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKFHS 854 (918)
Q Consensus 784 dg~I~i~D~~t~--~~~~~l~---~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---~~i~~ 854 (918)
.+.|++||++.. .+..++. ......+.|.|+|||++|+.+... .+++.|.-+|. .+..+..+. ..-..
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLS 237 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCccee
Confidence 779999999964 2333332 346678999999999988877777 89999998885 444443332 23367
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 855 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 855 i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~-h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
++|+||+++|++|+.||+|.+|++++++.+ .+.+ +.+.+.|+.|+|.--+++++ +..+.+|
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFW 300 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEE
Confidence 889999999999999999999999999988 5666 78999999999986666665 5567777
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=250.65 Aligned_cols=284 Identities=22% Similarity=0.392 Sum_probs=238.7
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------------------CceeeEeccCCCCeEEEEECCC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS 691 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~------------------~~~~~~l~~h~~~V~~l~fspd 691 (918)
+...+..|..+++|.+|++||.++|||+.|..|+|+|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4566788999999999999999999999999999999861 1356778899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe------e
Q 002471 692 MPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------K 763 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~ 763 (918)
..+|++|+.|++|++||+.... +..+.|. ...+|.+|.|+|.|+.++ .|..-.++++||+++..|.... .
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999999999997532 1122232 457899999999988665 8888899999999998876543 4
Q ss_pred cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC-CC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 002471 764 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 840 (918)
Q Consensus 764 ~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~-~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~ 840 (918)
+.+.++.+++.+..+++++.||.|+|||.-+++|+.++.. |. ..|.+..|..+++||++.+.| .|++|.+.++ +
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 5688999999999999999999999999999999998864 54 469999999999999999999 9999999888 6
Q ss_pred eEEEeccCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 841 CVHELSCNGN-----KFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 841 ~i~~~~~~~~-----~i~~i~~sp~g~~l~s~s~d-g~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
++.++.+.+. --+...|.....|++.-.+. +.++-||.++...+ .-.+|.+.|+++.-+|.+.-+++|++|.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 6666654321 12345677777777776553 58999999998776 4458999999999999999999999999
Q ss_pred cEEEeC
Q 002471 913 FVKLWK 918 (918)
Q Consensus 913 ~I~IWd 918 (918)
.+|+|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999994
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=253.95 Aligned_cols=276 Identities=21% Similarity=0.365 Sum_probs=233.1
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC---EEEEEeCCCeEEEEeCCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~---~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.|.+-|.+|... ++.|++|++||.++|||. .|+....+.+|.++|.+++|.-... .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889988887 679999999999999996 5889999999999999888865333 5999999999999999864
Q ss_pred Cce---eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------------------------eeeEEeec
Q 002471 713 GYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------------------------SCTRVFKG 764 (918)
Q Consensus 713 ~~~---~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-------------------------~~~~~~~~ 764 (918)
... +....||...|-+|...+++.. +++|+.|..|+||+..+. ..+..+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 322 3344599999999999999765 559999999999994321 11222333
Q ss_pred ---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 002471 765 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 840 (918)
Q Consensus 765 ---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~ 840 (918)
.+..+.|++ ...+++++.|.+|+.||++++.++.++.+ ...++|+.+++..++|++|+.| .|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345567777 78899999999999999999999888774 5679999999999999999999 99999999997777
Q ss_pred eEEEeccCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCc-EE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 841 CVHELSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENK-TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 841 ~i~~~~~~~~~i~~i~~sp~g~~-l~s~s~dg~I~vwd~~~~~-~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ .+ .+.+|.+.|.++.|. ++.+|++|+.|++|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88899999999999999997765 6778899999999999887 44 889999999999995 45689999999999998
Q ss_pred C
Q 002471 918 K 918 (918)
Q Consensus 918 d 918 (918)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 5
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=255.90 Aligned_cols=276 Identities=24% Similarity=0.413 Sum_probs=238.7
Q ss_pred cEEEEcCCCeeecc---CCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeeee
Q 002471 558 LMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 634 (918)
Q Consensus 558 ~~~fs~dg~~~~~~---~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l 634 (918)
+..|||||.|++++ +-+++||..+|+++.++.- ..-..+
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY--------------------------------------QAqd~f 259 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY--------------------------------------QAQDNF 259 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhh--------------------------------------hhhcce
Confidence 56899999999984 4558899999998876532 112234
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
.-+.+.|.|++||.|...||+|+.||+|+||.+.+|.+++.|. .|+..|+|+.|+.|+..|++++.|.+|||.-+.+ +
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-G 338 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-G 338 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-c
Confidence 4578899999999999999999999999999999999999998 8999999999999999999999999999999998 8
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCC-CEEEEEEcCCeE
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHL-GRYLAAAAENVV 787 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~-~~ll~~~~dg~I 787 (918)
++++.+.+|...|+...|.++|.++| +++.||+|++|+.++.+|+.+|+. .+..+...|.. ..++++...++|
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 89999999999999999999988766 999999999999999999999874 34555666655 567788888999
Q ss_pred EEEECCCceEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 788 SILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~---h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
+|.++. |..++.+.. ..+...+++.+|.|.++++.++| .++.|.+.++ .....+..|+..+..++-+|..+.
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccch
Confidence 999875 556666543 34557788899999999999999 8999999887 667778888999999999999999
Q ss_pred EEEEEcCCeEEEEE
Q 002471 864 LLVIGCYQSLELWN 877 (918)
Q Consensus 864 l~s~s~dg~I~vwd 877 (918)
|++-+.||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=244.65 Aligned_cols=271 Identities=23% Similarity=0.365 Sum_probs=230.9
Q ss_pred cccEEEEcCCCeeeccCCC---eeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeee
Q 002471 556 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 556 k~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~ 632 (918)
.-.++|.|+|..+++++.. -||++.. ..+...
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g---------------------------------------------dceN~~ 84 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYG---------------------------------------------DCENFW 84 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccc---------------------------------------------ccccee
Confidence 4578999999988876544 4566432 123345
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN 711 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~ 711 (918)
.+++|.+.|..+.|..|++.|++++.|++|+.||+++++.++.+++|...|+.+.-+.-|. +|.+++.||+++|||++.
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 6779999999999999999999999999999999999999999999999999998554444 567788899999999997
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
+..++++. ....++++.|...+..++ +|+-|+.|++||++...+..++.++ ++.+..++++..+++-+.|++|+
T Consensus 165 -k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 165 -KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred -cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEE
Confidence 66666664 457799999998887776 9999999999999999999998875 57788999999999999999999
Q ss_pred EEECCCc----eEEEEecCCC----CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002471 789 ILDAETQ----ACRLSLQGHT----KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859 (918)
Q Consensus 789 i~D~~t~----~~~~~l~~h~----~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 859 (918)
+||++-. .++..+.+|. .....++|+|++..+.+|+.| .+++||.... .++..+.+|.+.|.++.|+|
T Consensus 242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred EEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecC
Confidence 9999864 5577777653 345678999999999999999 9999999765 78999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEE
Q 002471 860 TYPSLLVIGCYQSLELWN 877 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd 877 (918)
...+|++++.|++|++=.
T Consensus 319 ~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCcEEEEeccCceeEeec
Confidence 999999999999998744
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=251.91 Aligned_cols=242 Identities=33% Similarity=0.609 Sum_probs=215.6
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
...+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|++++.+|++++.|+.|++||+.
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 34556788889999999999999999999999999999988889999999999999999998889988889999999998
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeE
Q 002471 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 711 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I 787 (918)
+ ......+..|...|.+++|+|++ .++++++.|+.|++||+++++.+..+.. .+.++.|++++..+++++.++.|
T Consensus 124 ~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 124 T-GKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred C-cEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 6 66777788899999999999984 4666777799999999998887776653 46789999999999999999999
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEE
Q 002471 788 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 866 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s 866 (918)
++||+++++.+..+..|...|.+++|++++.++++++.+ .|++||+.++ ..+..+..+...+.+++|++++.+|++
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEE
Confidence 999999999998888899999999999998899988856 9999999875 556666678889999999999999999
Q ss_pred EEcCCeEEEEE
Q 002471 867 IGCYQSLELWN 877 (918)
Q Consensus 867 ~s~dg~I~vwd 877 (918)
++.|+.|++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=240.00 Aligned_cols=276 Identities=21% Similarity=0.377 Sum_probs=230.0
Q ss_pred eEEEEEcc-CCCEEEEEe-------CCCcEEEEECCCCceeeEec--cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeC
Q 002471 641 VICCHFSS-DGKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPS-MPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 641 V~~l~fsp-dg~~Latgs-------~Dg~V~iwd~~~~~~~~~l~--~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl 709 (918)
=+++.||| -.++||++. ..|++.|.++...+-+..+. .-.+.+.+|+|+++ .+.+++++.||+++|||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 36788998 334555443 36889999986444444433 35678999999995 557889999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceE---EEEecCC-CEEEEEEcCC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHL-GRYLAAAAEN 785 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~sp~~-~~ll~~~~dg 785 (918)
..+..++..++.|...|.++.|++..+..+++++.|++|++|+......+.+|.++..+ ..|+|.. +.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 88888999999999999999999988888889999999999999999999999987655 5688876 4566677899
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-C
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P 862 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g-~ 862 (918)
.+++||++..-....+..|...|.|+.|+. +.++|++++.| .|++||+++-+ ..+.++.+|+..|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 999999998655555899999999999998 45588999999 99999999765 5688889999999999999975 5
Q ss_pred EEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~sp-dg~~Lasgs~Dg~I~IWd 918 (918)
.|++++.|-+++|||....... +...|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6778888899999999865543 6678899999999987 667999999999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=267.72 Aligned_cols=247 Identities=18% Similarity=0.312 Sum_probs=219.0
Q ss_pred CCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc
Q 002471 669 TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (918)
Q Consensus 669 ~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 747 (918)
..+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++...+.++++|.+|..+|.+++|+.+|..++ +++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeeccee
Confidence 3456788899999999999999 8899999999999999999998999999999999999999999998877 9999999
Q ss_pred EEEEEcCCCeeeEEeec--CceEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002471 748 IRYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 824 (918)
Q Consensus 748 I~iwdl~~~~~~~~~~~--~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s 824 (918)
|++||+++|+++..|.. ...++.|.|++ +.|++|+.|+.|+.||+++++.+.++..|-+.|..|.|-++|+.+++.+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999998875 46889999999 8899999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccC--CCeEEEE
Q 002471 825 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALA 897 (918)
Q Consensus 825 ~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~----~~~~h~--~~V~~la 897 (918)
+| +|+||+.+.....+.+... ......+|..+|+++++++-+.|+.|.+|.+...-.. .+.+|. +.-..|.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 99 9999999877544443332 2445678899999999999999999999987654333 566775 4567789
Q ss_pred EeCCCCEEEEEecCCcEEEeC
Q 002471 898 VSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 898 ~spdg~~Lasgs~Dg~I~IWd 918 (918)
|+|||++|++|+.||.|.+||
T Consensus 440 fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EcCCCCeEEeecCCccEEEee
Confidence 999999999999999999997
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=257.78 Aligned_cols=281 Identities=17% Similarity=0.335 Sum_probs=236.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
.-..+..|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..+|..|.+.|..|++.. ..+++++.|++|+
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 334566789999999999999977 7899999999999999999999999999999999999986 6899999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~ 782 (918)
.|.++. .+++++.+ ...+..|.-+.. ...++||+. .|.|||......+..+.- .+.++.|+|....+++++
T Consensus 133 ~wk~~~--~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 133 QWKIDG--PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred eeeccC--Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 999985 36666654 445666766554 346778864 599999988888887763 457889999887776665
Q ss_pred -cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 783 -AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 783 -~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
+|+.|.+||++...++..+. -.-.-+.|+|+|.+-.|+++++| .++.||++... ..+..+.+|.+.|.++.|+|.
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred ccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCC
Confidence 79999999999998776654 23445789999988889999999 99999998653 567778889999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEEEc--ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 861 YPSLLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~~~~~--~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|..|++|+.|++|+||.++.+....+. ..-..|.|+.|+-|.+||++||+|+.|++|+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999999988765322 2335799999999999999999999999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=268.28 Aligned_cols=242 Identities=25% Similarity=0.447 Sum_probs=210.9
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.+.+|.++|+.|+|+|...++++|+.|.+|+||+.++.+++.++.+|-+.|..+.|++.-.+|+++|+|-+||||+..+
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs- 124 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS- 124 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-----------------------------eeEEee
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-----------------------------CTRVFK 763 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-----------------------------~~~~~~ 763 (918)
..++..++||...|.|..|+|..+ +|++++-|-+|||||+..-+ ....+.
T Consensus 125 r~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 889999999999999999999744 77799999999999985321 111223
Q ss_pred c---CceEEEEecCCCEEEEEEcCCeEEEEECCCce--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002471 764 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 764 ~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~ 837 (918)
+ ++..++|+|....+++|+.|..|++|.....+ .+.+..+|...|.++-|+|.-++|++.++| +|+|||+...
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR- 282 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR- 282 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-
Confidence 3 45668899999999999999999999887554 455678999999999999999999999999 9999999765
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
..+..++.....++.++.+|..+.+++ +.|+.+.||.+..
T Consensus 283 --t~v~tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 283 --TSVQTFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLER 322 (1202)
T ss_pred --cceeeeeccCCeEEEEEecCCcceeee-ecCCceEEEEEcc
Confidence 778888878899999999999985554 5566677777763
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=235.71 Aligned_cols=266 Identities=22% Similarity=0.380 Sum_probs=215.8
Q ss_pred ccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeeee-ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-
Q 002471 591 LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD- 668 (918)
Q Consensus 591 ~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l-~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~- 668 (918)
+++.++-|+.++.|-.. .+-++.++..+ .+|+..|++|+|+|.|++||+|+.|.++.||.-.
T Consensus 29 ilAscg~Dk~vriw~~~----------------~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTS----------------SGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred EEEeecCCceEEEEecC----------------CCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 55666666666666432 22256677666 4899999999999999999999999999999865
Q ss_pred -CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC
Q 002471 669 -TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745 (918)
Q Consensus 669 -~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 745 (918)
+++++.++++|...|.|++|+++|++||+++.|+.|-||.+.. .-.++..+..|...|.-+.|+|..+ ||++++.|
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYD 171 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYD 171 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccC
Confidence 5688999999999999999999999999999999999999984 3457789999999999999999744 77799999
Q ss_pred CcEEEEEcCC---CeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCE
Q 002471 746 GEIRYWSINN---GSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 819 (918)
Q Consensus 746 g~I~iwdl~~---~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~ 819 (918)
++|++|+-.. -.|+.++.++ +-++.|.+.|.++++++.|++|+||-..+.-. ..|...+..+.|. ...
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~ 245 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGV 245 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccc
Confidence 9999998772 3577777765 45688999999999999999999998663211 2277889999998 457
Q ss_pred EEEEeCC-eEEEEECCCCCC---cceE-EEeccCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 002471 820 LASVSED-SVRVWTVGSGSE---GECV-HELSCNGNKFHSCVFHPT-YPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 820 Las~s~d-~I~iwdl~s~~~---~~~i-~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~vwd~~ 879 (918)
|++++.| .|+||....... ...+ +.-..|+..|+++.|.|. ...|++++.||.|++|.+.
T Consensus 246 IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 246 IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 7887777 999998764311 1122 234567889999999995 6789999999999999864
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=271.30 Aligned_cols=243 Identities=22% Similarity=0.330 Sum_probs=199.8
Q ss_pred eeeee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC----------------------------------------
Q 002471 631 ANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---------------------------------------- 669 (918)
Q Consensus 631 ~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~---------------------------------------- 669 (918)
...+. +|.+.|+|+.||+||+|||+||.||.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 8999999999999999999999999999997643
Q ss_pred --------------------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEE
Q 002471 670 --------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (918)
Q Consensus 670 --------------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl 729 (918)
.+++..|.+|.+.|.+|.|+.++ +|++++.|++||+|++.. ..|+.+|. |.+.|+||
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEE
Confidence 01122356899999999999765 999999999999999997 78888887 99999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC--C-
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H- 804 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h- 804 (918)
+|+|.++++|++|+-||.||||+|...+++.-. +.-++.++|.|+|...++|+.+|.+++|+.+..+....+.- |
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999998999999999999999999988877654 45678999999999999999999999999998776554321 1
Q ss_pred -----CCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCC--CceEEEEEeCCCCEEEEEEcCCeEEE
Q 002471 805 -----TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCYQSLEL 875 (918)
Q Consensus 805 -----~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~--~~i~~i~~sp~g~~l~s~s~dg~I~v 875 (918)
...|+.+.|.|... .|++.+.| .|||||.+.. ..+..+++.. ..-....|+.||++|++++.|..|+|
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 22799999998443 45556666 9999999765 3444444332 33456689999999999999999999
Q ss_pred EECC
Q 002471 876 WNMS 879 (918)
Q Consensus 876 wd~~ 879 (918)
|++.
T Consensus 573 W~~~ 576 (712)
T KOG0283|consen 573 WKND 576 (712)
T ss_pred EeCC
Confidence 9973
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=251.30 Aligned_cols=277 Identities=19% Similarity=0.288 Sum_probs=232.3
Q ss_pred CcccEEEEcCCCeeeccCCC---eeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceee
Q 002471 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 631 (918)
Q Consensus 555 ~k~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~ 631 (918)
--..+.||++|+|+++.... -+|++. ....++.+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~-------------------------------------------~d~~~kl~ 262 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVV-------------------------------------------YDVHFKLK 262 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEe-------------------------------------------cCcceeee
Confidence 45789999999999875433 345432 11157888
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
+++.+|..+|..|.||||.++|++|+.|..+++||+.++.+...+. +|...+.+++|.|||..+++|+.|++|..||++
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 9999999999999999999999999999999999999999888876 457889999999999999999999999999998
Q ss_pred CCCceeEEeccCC-CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCeE
Q 002471 711 NPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 711 ~~~~~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I 787 (918)
. ..+..+.+-. ..|.+++..+||+.++ +.+.|..|++|+.++..++..+ ..++.++.++.++.++++.-.+..|
T Consensus 343 g--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 343 G--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred c--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 4 4444454433 5699999999999877 5557999999999887766444 3467889999999999999999999
Q ss_pred EEEECCCceEEEEecCCCCC--eEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-
Q 002471 788 SILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP- 862 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~h~~~--V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~- 862 (918)
.+||++..+.+..+.||+.. |..-||-- +..++++|++| .|+||+..++ +.+.++.+|...|.+++|+|..+
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHH
Confidence 99999999999999998765 44445654 44699999999 9999999887 88999999999999999999765
Q ss_pred EEEEEEcCCeEEEEECCC
Q 002471 863 SLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~ 880 (918)
.+++++.||+|+||....
T Consensus 497 m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSD 514 (519)
T ss_pred HhhccCCCCeEEEecCCc
Confidence 578888999999998754
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=252.50 Aligned_cols=274 Identities=19% Similarity=0.306 Sum_probs=238.6
Q ss_pred CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 638 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 638 ~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
.+.|.+++|+|... -+|+.+ .-.|.||+..+...++++......|.+++|..||++|++|...|.|+|||+.+ ...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 45799999999543 344443 45799999998888888888899999999999999999999999999999655 6678
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCC-EEEEEEcCCeEEEEEC
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLG-RYLAAAAENVVSILDA 792 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~-~ll~~~~dg~I~i~D~ 792 (918)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.++ +.+..|+|-.+ .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 9999999999999999999999999999999999999998875555554 56777888766 5677888999999999
Q ss_pred CCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 793 ETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 793 ~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
+.. ..+.++. |..+|.++.+-|.|.+|++++...|+|||+.+|. ..+..+..|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 988 5555554 9999999999999999999999999999998764 44555556899999999999999999999999
Q ss_pred eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 872 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 872 ~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
.|++||+.+-+.+.-....++|.+|+++|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999998888877788899999999999999999999998754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=269.94 Aligned_cols=270 Identities=27% Similarity=0.471 Sum_probs=238.0
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|++++|...+.+|++|+.|.+++|||+.+ +.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~ 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc
Confidence 367788899998 55899999999999999999998888 999999999999998888999999999999999887 89
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEE-EEecCCCEEEEEEcCCeEEEEECC
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM-RFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v-~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
+..++.+|...|.++...+ .++++|+.|.+|++|++.++.++..+.++...| +..-+++.+++++.|++|.+||+.
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhh
Confidence 9999999999999998874 467789999999999999999999988644332 233448899999999999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCe
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 872 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~ 872 (918)
++++++++.+|...|.++.+... ..+++|+.| +|++||+++.. +|+..+..|...+..+.+ .+.+|++++.|++
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccccc
Confidence 99999999999999999988765 899999999 89999998764 788999998888865554 5678999999999
Q ss_pred EEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 873 LELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 873 I~vwd~~~~~~~-~~~~-h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 999999999988 5666 67889999886 45788899999999997
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=246.52 Aligned_cols=276 Identities=24% Similarity=0.389 Sum_probs=243.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
...|.++...+....++||+.|+++.++|......+.+|+||...|+.+.|+++...+++++.|..|+||.+.. ..+..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 35688888888778999999999999999999999999999999999999999999999999999999999987 45667
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~ll~~~~dg~I~i~D~ 792 (918)
....|..+|+.+..+|.|+++| +++.||++.+.|++++.++..... ...+..|+|||-.|.++..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7788999999999999988766 999999999999999998876654 3678899999999999999999999999
Q ss_pred CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 793 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 793 ~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
.+...+..|.+|.++|..|.|+.+|.||+++++| .|++||+|..+..+.+.. .....+.++.|...|.+|++++.|=
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--cccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999999 799999987654333322 1234799999999999999998877
Q ss_pred eEEEEECCCCc--EE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 872 SLELWNMSENK--TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 872 ~I~vwd~~~~~--~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.|++++-.+.. ++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 77777755543 33 566788899999999999999999999999987
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=228.83 Aligned_cols=267 Identities=24% Similarity=0.349 Sum_probs=229.9
Q ss_pred ccEEEEcCCCeeeccCCC---eeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 557 ~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
..+.|.-||.|.++.+.. +||++..+ .++++
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------------------------------------~likt 54 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------------------------------------ALIKT 54 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeeccccc----------------------------------------------ceeee
Confidence 467888899998885544 66766433 35678
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP- 712 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~- 712 (918)
+.+|...|..++.+.|...|++|+.|+.|.+||+++++.++.+++|.+.|+.++|+.+...+++|+.|.+|++||.++.
T Consensus 55 YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s 134 (307)
T KOG0316|consen 55 YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS 134 (307)
T ss_pred ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
.+++..+....+.|.+|... ++.|++|+.||++|.||++.|.....+- .+++++.|+++++..++++.|++|++.|
T Consensus 135 ~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 35678888888999999997 4467799999999999999998877654 4789999999999999999999999999
Q ss_pred CCCceEEEEecCCCCCe--EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc-eEEEEEeCCCCEEEEE
Q 002471 792 AETQACRLSLQGHTKPI--DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYPSLLVI 867 (918)
Q Consensus 792 ~~t~~~~~~l~~h~~~V--~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~-i~~i~~sp~g~~l~s~ 867 (918)
-++++.+..+++|...- ..++++.....+++|++| .|++||+... ..+..+..+... +.++.++|.-..|+++
T Consensus 212 k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEe
Confidence 99999999999997653 345677777799999999 9999999766 667777777766 8999999998888887
Q ss_pred EcCCeEEEE
Q 002471 868 GCYQSLELW 876 (918)
Q Consensus 868 s~dg~I~vw 876 (918)
...+ +.+|
T Consensus 289 ~~~~-~~~~ 296 (307)
T KOG0316|consen 289 TGHG-DLFW 296 (307)
T ss_pred cCCc-eece
Confidence 6544 4444
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=283.41 Aligned_cols=238 Identities=18% Similarity=0.247 Sum_probs=199.8
Q ss_pred CCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 638 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 638 ~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
...|.+++|++ ++.+||+++.||+|+|||+.+++.+..+.+|...|++|+|+| ++.+|++|+.||+|+|||+.+ +.+
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~ 610 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS 610 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence 45799999987 578999999999999999999999999999999999999997 788999999999999999987 566
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
+..+..+ ..|.++.|.+....+|++|+.||.|++||+++.+ .+..+. ..+..+.|. ++..+++++.|+.|+|||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 7777644 6799999976656677899999999999998765 344443 345677786 678899999999999999
Q ss_pred CCC------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc--------eE--EEeccCCCceEE
Q 002471 792 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--------CV--HELSCNGNKFHS 854 (918)
Q Consensus 792 ~~t------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~--------~i--~~~~~~~~~i~~ 854 (918)
++. ..++..+.+|...+.+++|++++.+|++|+.| .|+||+........ .+ .....+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 975 35778899999999999999999999999999 99999986542110 00 011234556999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 855 CVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 855 i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
++|++++..|++++.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-26 Score=261.71 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=200.5
Q ss_pred EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCCc-------eeEEeccCCCCee
Q 002471 656 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM 727 (918)
Q Consensus 656 gs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~-------~~~~~~~h~~~V~ 727 (918)
|+.++.|+||+......+..+.+|...|.+|+|+|+ +.+||+|+.||+|+|||+.+.+. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998888888999999999999999996 78999999999999999986332 3456789999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC
Q 002471 728 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 805 (918)
Q Consensus 728 sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~ 805 (918)
+|+|+|++..+|++++.|++|+|||++++..+..+. ..+.++.|++++..+++++.|+.|+|||+++++.+.++.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988766553 457889999999999999999999999999999999999998
Q ss_pred CCeEEE-----EEcCCCCEEEEEeCC-----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002471 806 KPIDSV-----CWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 875 (918)
Q Consensus 806 ~~V~si-----~~spdg~~Las~s~d-----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~v 875 (918)
+.+.+. .|++++.+|++++.+ .|+|||++..........+..+.+.+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 345788888887655 5999999865433333344444444444445566888999999999999
Q ss_pred EECCCCcEEEE--cccCCCeEEEEEeCCC
Q 002471 876 WNMSENKTMTL--TAHEGLIAALAVSTET 902 (918)
Q Consensus 876 wd~~~~~~~~~--~~h~~~V~~la~spdg 902 (918)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788999999864
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=237.17 Aligned_cols=287 Identities=17% Similarity=0.325 Sum_probs=243.4
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
.+..++.+.||.+.|+.++....-.++.+++.|.+.+||.+++++|+.++.+|.+.|+||+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56778889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EeC------CC-----------------------------C----CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc
Q 002471 707 WDA------DN-----------------------------P----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (918)
Q Consensus 707 wdl------~~-----------------------------~----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 747 (918)
|.. .. . ..++..+++|...|.+..|...+..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 962 10 0 023567789999999999998777655 9999999
Q ss_pred EEEEEcCCCeeeEEeecCc---eEEEEecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 002471 748 IRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 748 I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~ 823 (918)
..+||+++++.+..+.++. +.++.+|....+++++.|.++++||.+.. ..+..|.+|...|+++.|.-+ ..+++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceeec
Confidence 9999999999999988764 44566777788888888999999999964 567789999999999999874 467889
Q ss_pred eCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----EcccCCCeEEEE
Q 002471 824 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA 897 (918)
Q Consensus 824 s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~-----~~~h~~~V~~la 897 (918)
++| +|+|||+++.. ..+..+.. ..++..++.+..++.|+.-..++.|++||+...++.. ..+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 999 99999998754 23333332 6778889999888888888888899999999887664 347999999999
Q ss_pred EeCCCC--EEEEEecCCcEEEeC
Q 002471 898 VSTETG--YVASASHDKFVKLWK 918 (918)
Q Consensus 898 ~spdg~--~Lasgs~Dg~I~IWd 918 (918)
|..+.. -|++|+.|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 976543 378999999998885
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=233.17 Aligned_cols=270 Identities=16% Similarity=0.272 Sum_probs=222.9
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCC-Ccee-eEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 636 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 636 ~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.-.+.|.+|+||| ...+|+.++.|++||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S- 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS- 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-
Confidence 3567899999999 556777999999999999985 3333 44557999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeeEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
+ .+..+..|.++|.++.|.+... .+|+||+.|.+|++||.+....+.++..+..+.+.......++++..++.|.+|+
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 3 5677778999999999987643 3678999999999999999999998888888878777778899999999999999
Q ss_pred CCCceEEEEe-c-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---------CceEEEEEeC
Q 002471 792 AETQACRLSL-Q-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP 859 (918)
Q Consensus 792 ~~t~~~~~~l-~-~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---------~~i~~i~~sp 859 (918)
++.+...+.. . .-.-.++||+...|....+.|+-+ .+.|..+..+.. +.-..|++|. ..|.+|+|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence 9876433221 1 123458899999988877778766 888888877533 4444555554 2477899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002471 860 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasg 908 (918)
....|+++|.||++.+||-.....+ ....|..+|+|++|+.+|.++|.+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999887766 678899999999999999988765
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=258.87 Aligned_cols=263 Identities=15% Similarity=0.230 Sum_probs=207.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee-------------eEeccCCCCeEEEEECC-CCCEEEEEeCCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-------------TNLEEHSSLITDVRFSP-SMPRLATSSFDK 702 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg 702 (918)
|...|+...+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666667777666677766666667764432221 24678999999999999 888999999999
Q ss_pred eEEEEeCCCCC------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEec
Q 002471 703 TVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQP 773 (918)
Q Consensus 703 ~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp 773 (918)
+|+|||+.+.+ .++..+.+|...|.+|+|+|++..+|++++.|++|+|||+++++.+..+.+ .+.++.|++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999997642 356788999999999999998777888999999999999999988877754 467899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC-eEEEEEcCCCCEEEEEe----CC-eEEEEECCCCCCcceEEEecc
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC 847 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~-V~si~~spdg~~Las~s----~d-~I~iwdl~s~~~~~~i~~~~~ 847 (918)
++..+++++.|+.|+|||+++++.+..+.+|... +..+.|.+++.+|++++ .| .|++||+++... .+.....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~ 256 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDL 256 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEecc
Confidence 9999999999999999999999999999888765 45678999888777654 24 899999987543 2333222
Q ss_pred -CCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCC
Q 002471 848 -NGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTE 901 (918)
Q Consensus 848 -~~~~i~~i~~sp~g~~l~s~s-~dg~I~vwd~~~~~~~~~--~~h~~~V~~la~spd 901 (918)
....+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+...+..++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 234456677999999999888 499999999999887732 235567788888775
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=267.13 Aligned_cols=277 Identities=20% Similarity=0.330 Sum_probs=234.1
Q ss_pred CCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCC------------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 637 STSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs--~Dg~V~iwd~~~------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
+...|.+|+.+|||..+|||+ .||.++||+.+. .+.+.+...|.+.|+|+.|++||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 455699999999999999999 999999998642 234556678999999999999999999999999
Q ss_pred eEEEEeCCC------C-----------CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC
Q 002471 703 TVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 765 (918)
Q Consensus 703 ~V~Iwdl~~------~-----------~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~ 765 (918)
.|.||+... . -+++..+.+|...|.+++|+|++ .++++++.|++|.|||.++.+++++++++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeeecc
Confidence 999999872 1 13577889999999999999975 47779999999999999999998888765
Q ss_pred ---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC------CCeEEEEEcCCCCEEEEEeC----C-eEEEE
Q 002471 766 ---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRVW 831 (918)
Q Consensus 766 ---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------~~V~si~~spdg~~Las~s~----d-~I~iw 831 (918)
+..+.|.|-|.+|++-+.|++|+||++.+..+.+.+.++. ..+..+.|+|||.+|++... . ++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 5678999999999999999999999988877777766543 35789999999999998642 2 78888
Q ss_pred ECCCCCCcceEEEeccCCCceEEEEEeCC-------------CC----EEEEEEcCCeEEEEECCCCcEEE--EcccCCC
Q 002471 832 TVGSGSEGECVHELSCNGNKFHSCVFHPT-------------YP----SLLVIGCYQSLELWNMSENKTMT--LTAHEGL 892 (918)
Q Consensus 832 dl~s~~~~~~i~~~~~~~~~i~~i~~sp~-------------g~----~l~s~s~dg~I~vwd~~~~~~~~--~~~h~~~ 892 (918)
+-.+. ++-..+.+|..++.++.|+|. .. .+++|+.|++|.||.....+.+. ..-....
T Consensus 251 eR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 251 ERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred ecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 87543 677788899999999999872 11 57889999999999998777763 3345678
Q ss_pred eEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 893 IAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 893 V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|.+++|+|||..|+.||.||+|.++
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999999999999999999875
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=233.97 Aligned_cols=251 Identities=19% Similarity=0.277 Sum_probs=223.9
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
-.-+.++++|.+.|+..++..+..+.|+++.|-+.+|||.-++..+..|. |...|..++|+.|.++|++|+.++.+|||
T Consensus 49 gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 49 GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVF 127 (334)
T ss_pred CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhh
Confidence 34467899999999999999999999999999999999999999999886 88899999999999999999999999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCC
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg 785 (918)
|++.+..+...+.+|.+.|..+.|+.....+| ++..|++||+||.++++.+..+. .++.++.++.+ +.+++.+..+
T Consensus 128 dln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d-G~ilTia~gs 205 (334)
T KOG0278|consen 128 DLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD-GRILTIAYGS 205 (334)
T ss_pred hccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccC-CCEEEEecCc
Confidence 99998899999999999999999998866666 77899999999999999888764 57888999988 4566777788
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
.|.+||..+...++.++ -...|.+..++|+..++++|++| .++.||..++.+..+. .++|.++|.|+.|+|+|...
T Consensus 206 sV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred eeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCcee
Confidence 99999999998888766 45679999999999999999999 9999999998654441 47899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEE
Q 002471 865 LVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~ 884 (918)
++|+.||+|+||-...++..
T Consensus 283 AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCCceEEEEEecCCCch
Confidence 99999999999998776544
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-26 Score=252.80 Aligned_cols=266 Identities=22% Similarity=0.427 Sum_probs=227.5
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEecc-
Q 002471 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG- 721 (918)
Q Consensus 643 ~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~- 721 (918)
-+.|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||+.+ .+.++.+.+
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGS 258 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCC
Confidence 36677 444777775 55899999999887777766689999999999999999999999999999987 666777777
Q ss_pred CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-ee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 002471 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 797 (918)
Q Consensus 722 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 797 (918)
|...|-+++|. ..++.+|+.|+.|..+|++....... +. ..+..+.|++++..++.++.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999998 44777999999999999998765443 33 3456688999999999999999999999999999
Q ss_pred EEEecCCCCCeEEEEEcCC-CCEEEEEe--CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc--CC
Q 002471 798 RLSLQGHTKPIDSVCWDPS-GELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQ 871 (918)
Q Consensus 798 ~~~l~~h~~~V~si~~spd-g~~Las~s--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~--dg 871 (918)
+..+..|...|..++|+|- ..+||+|+ .| +|++||+.++.. +..+. ....|..+.|++..+.|+++.. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~---i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR---IDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE---ecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 9999999999999999994 44888875 34 899999998743 33332 2788999999999988887755 45
Q ss_pred eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 872 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 872 ~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999998777 7889999999999999999999999999999996
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=231.53 Aligned_cols=245 Identities=23% Similarity=0.410 Sum_probs=206.8
Q ss_pred CccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCC
Q 002471 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 702 (918)
Q Consensus 625 ~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg 702 (918)
.+++.+...+..|.+.|+|++.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 34778889999999999999996 88999999999999999999999999999999999999999765 899999999
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~ 782 (918)
.|.+|++.. ..++.++++|.+.|+.|+.+|.++ |.++.+.|+.+++||+-+|+.-...+.
T Consensus 108 ~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L------------------ 167 (362)
T KOG0294|consen 108 HIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNL------------------ 167 (362)
T ss_pred cEEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeecc------------------
Confidence 999999997 688999999999999999999976 666888899999999988764433221
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
...-+.|.|+|.|.+|+.+..+.|-||.+.+... +.++.. ...+.++.|- ++.
T Consensus 168 ----------------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v---~~~i~~-~~r~l~~~~l-~~~ 220 (362)
T KOG0294|consen 168 ----------------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASV---FREIEN-PKRILCATFL-DGS 220 (362)
T ss_pred ----------------------CCcceeeEEcCCCCEEEEEeccEEEEEecccHhH---hhhhhc-cccceeeeec-CCc
Confidence 1112338999999999999999999999876522 222211 2446666664 567
Q ss_pred EEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEE--eCCCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~--spdg~~Lasgs~Dg~I~IWd 918 (918)
+|++|+.|+.|.+||..+..+. .+.+|...|.++.+ .|++.+|+|++.||.|+|||
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 8999999999999999987777 78899999999985 56788999999999999997
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=209.82 Aligned_cols=287 Identities=21% Similarity=0.298 Sum_probs=234.5
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------C---------ceeeEeccCCCCeEEEEECCC
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------L---------KSKTNLEEHSSLITDVRFSPS 691 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~------~---------~~~~~l~~h~~~V~~l~fspd 691 (918)
.|+.+..++ .+..|++++|+|.|.+.|+|+..++++|.-... + ...+.-+.|.+.|.|++|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 555666554 566899999999999999999999999874321 1 112234568999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCc----eeEEeccCCCCeeEEEEcCC---CCeEEEEEe-CCCcEEEEEcCCCeeeEEee
Q 002471 692 MPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~----~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~ 763 (918)
|.+|++|+.|++|++.-++.... .-..|.-|.+.|..++|..+ +..++++++ .|..|++-|...+.....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999999999987764221 23456779999999999654 445666554 57889999999998888887
Q ss_pred cCceEE-E-EecCCCEEEEEEcCCeEEEEECCCceEEEEecC--C-----CCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 764 GGTAQM-R-FQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 764 ~~~~~v-~-~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h-----~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
++...+ + ++..+-.+++++.|.+|++||++-..++.++.. | ...|.+++.+|.|++|++|-.| ...+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 765432 2 445556777788899999999999988887653 2 2569999999999999999999 8999999
Q ss_pred CCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----EEEEcccCCCeEEEEEeCCCCEEEEE
Q 002471 834 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 834 ~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~-----~~~~~~h~~~V~~la~spdg~~Lasg 908 (918)
+.+ ..+..+..|...|.++.|+|.-.|+++++.|..|++-|+...- .+.+..|...+..+.|+|..--+++.
T Consensus 261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 987 7888999999999999999999999999999999999987542 33566899999999999999889999
Q ss_pred ecCCcEEEe
Q 002471 909 SHDKFVKLW 917 (918)
Q Consensus 909 s~Dg~I~IW 917 (918)
+.|.++.+|
T Consensus 338 sadkt~tlw 346 (350)
T KOG0641|consen 338 SADKTATLW 346 (350)
T ss_pred cCcceEEEe
Confidence 999999999
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=227.04 Aligned_cols=247 Identities=21% Similarity=0.342 Sum_probs=205.7
Q ss_pred ceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 002471 628 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTV 704 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V 704 (918)
+.+...+. -.+.+..++|++. .+.+++++.||+++|||+. ...++..+++|...|.++.|++ ++..++++|.|++|
T Consensus 51 i~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 51 IQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred eEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 34444443 3567999999995 4688999999999999965 5578899999999999999998 55678888999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCE-EEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLA 780 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~-ll~ 780 (918)
++|+... ...+.++.+|...|+...|+|...+++++++.|+++++||++.......+.. .+.++.|+..... +++
T Consensus 130 KLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 130 KLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred EeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe
Confidence 9999987 6778999999999999999999999999999999999999987543333443 5567778776654 556
Q ss_pred EEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 781 AAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
++.|+.|++||++.- .++.++.+|.-.|+.|+|+|... +|++++.| ++||||..... .++.....|..-+..+.|
T Consensus 209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDW 286 (311)
T ss_pred cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEecccc
Confidence 677999999999975 67888999999999999999655 99999999 99999997542 456666677778888888
Q ss_pred eC-CCCEEEEEEcCCeEEEEEC
Q 002471 858 HP-TYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 858 sp-~g~~l~s~s~dg~I~vwd~ 878 (918)
++ +..+++.++.|+.++||+-
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 87 5678999999999999984
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=247.92 Aligned_cols=347 Identities=14% Similarity=0.201 Sum_probs=266.7
Q ss_pred cCCCeeEeCCCcchhhhcccccccCCC-------------------cCceeeeeccCCCC----CCCCCCcccccccCcc
Q 002471 571 SPSNQLWDDKDLELRADMDRLVEDGSL-------------------DDNVESFLSHDDTD----PRDAGGRGMDVSQGFS 627 (918)
Q Consensus 571 ~~~~~lwd~~~~~~~~~~~~~~~~gs~-------------------d~~v~~~~~~~~~~----~~~~~~~~~d~~~~~s 627 (918)
++.++|++.++.++...+.+.-+.|.. .+.|.+.+.+-..- ..+...-+||+.+...
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k 358 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK 358 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc
Confidence 566789999888887777664333322 22333222221111 1344556888888777
Q ss_pred ceeeeeeecCCCCeEEEEEccCC-----------CEEEEEeCCCcEEEEECCCCceeeE---------------------
Q 002471 628 FKEANSVRASTSKVICCHFSSDG-----------KLLATGGHDKKAVLWHTDTLKSKTN--------------------- 675 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg-----------~~Latgs~Dg~V~iwd~~~~~~~~~--------------------- 675 (918)
......+-.|...|+.|.--|.. ..++|++.|++|++||++.+..-.+
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 77888888999999998876611 2689999999999999874211100
Q ss_pred ----------------eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC--CCe
Q 002471 676 ----------------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDD 737 (918)
Q Consensus 676 ----------------l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ 737 (918)
.......|.+|+.+|+|.+||+|..-|++||||+.+ -.....+..|...|.|+.|+.- +..
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhH
Confidence 001345699999999999999999999999999987 5556777899999999999753 456
Q ss_pred EEEEEeCCCcEEEEEcCCC-eeeEEeec---CceEEEEecCC--CEEEEEEcCCeEEEEECCCceEEEEecC-----CCC
Q 002471 738 LICSCDGDGEIRYWSINNG-SCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVVSILDAETQACRLSLQG-----HTK 806 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdl~~~-~~~~~~~~---~~~~v~~sp~~--~~ll~~~~dg~I~i~D~~t~~~~~~l~~-----h~~ 806 (918)
||++++.|..|.|||+... ..+.++.+ .++.+.|...+ ..+++++.|..|.+--.........+.. ...
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 8999999999999998754 34445544 46778888877 5688888888776543332111111111 234
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-
Q 002471 807 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM- 884 (918)
Q Consensus 807 ~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~- 884 (918)
.+..++..|..+++++++.| .|+|||+.+++..+.++.-..|++....+...|.|.||++.+.|++|.|||+.+++++
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 68899999999999999999 9999999999666666666677788999999999999999999999999999999999
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 885 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 ~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+.+|...|+.+.|.+|.++|++++.||+|.||+
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 8999999999999999999999999999999996
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=258.71 Aligned_cols=279 Identities=18% Similarity=0.264 Sum_probs=209.8
Q ss_pred CCCCCcccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccc---------cccCC------CcCceeeeeccCCCCC
Q 002471 551 SGTTSKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRL---------VEDGS------LDDNVESFLSHDDTDP 612 (918)
Q Consensus 551 ~~~~~k~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~---------~~~gs------~d~~v~~~~~~~~~~~ 612 (918)
.-....+.+.||+||+|+++ |+.++||.+...+. ..++.. .+.+. ..+.+...........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 33456789999999999999 45568999987443 111110 00000 0011111111111111
Q ss_pred CCCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC-C
Q 002471 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-S 691 (918)
Q Consensus 613 ~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp-d 691 (918)
.......-+....|.-+++..++||.+.|.+|.||.++ +|++++.|++||||++...+++++|. |.+.|+||+|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 11112333344557778999999999999999999876 99999999999999999999999996 999999999999 8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--------
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------- 763 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-------- 763 (918)
.+|+++||.||.||||++.. ..+..+..-..-|+++||.|+|...| .|+.+|.+++|+++..+....+.
T Consensus 422 DryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CCcEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCceEE-EEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 88999999999999999985 34455555568899999999987555 89999999999998876554331
Q ss_pred --c-CceEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002471 764 --G-GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGS 835 (918)
Q Consensus 764 --~-~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~--~V~si~~spdg~~Las~s~d-~I~iwdl~s 835 (918)
+ .++.+.|.|.. ..+++++.|..|+|||.++..++..|+++.. .-....|+.||++|+++++| .|+||++..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 1 36667777654 4699999999999999999999998887543 34567899999999999999 999999843
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=254.14 Aligned_cols=273 Identities=22% Similarity=0.379 Sum_probs=233.4
Q ss_pred EEEEc-cCCCEEEEEeCCCcEEEEECCCCc------eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC-c
Q 002471 643 CCHFS-SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-Y 714 (918)
Q Consensus 643 ~l~fs-pdg~~Latgs~Dg~V~iwd~~~~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-~ 714 (918)
.+..+ |.+++|+|||.||.|++|++.... ....++.|.+.|.++....+++.|+++|.|-+|++|+..... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33444 366789999999999999986322 467788999999999999999999999999999999998754 7
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEe------------ecCceEEEEecCCCEEEE
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVF------------KGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~------------~~~~~~v~~sp~~~~ll~ 780 (918)
+..++..|.+.|.||++......++++|+.|+.|++||++++. .+..+ +..+.+++..+.+..++.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 8889999999999999955557799999999999999999873 23222 224566777888878888
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002471 781 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 859 (918)
|+.++.|++||.++.+.+..+.+|...|+++..++||..+++++.| +|++||++.. +|+.++..|...|+++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCC
Confidence 9999999999999999999999999999999999999999999999 9999999765 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 860 TYPSLLVIGCYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~-~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+-.++++|+.|+.|+.-|+++. ++..+...+.+|..+..+....-+-+++.|+.|+-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999984 4446667777888888876555556777899999884
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=232.06 Aligned_cols=257 Identities=21% Similarity=0.342 Sum_probs=217.1
Q ss_pred CCCCcccccccCccceeeeeeecCCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEE
Q 002471 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDV 686 (918)
Q Consensus 614 ~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg---~~Latgs~Dg~V~iwd~~~~~~----~~~l~~h~~~V~~l 686 (918)
|+..|.|+. ..+....+.+|+++|.+++|.... ..|++++.|.++++|.++.++. +....+|...|-+|
T Consensus 124 Dg~~riWd~----~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 124 DGTSRIWDL----KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred CCeeEEEec----CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 444555654 446888999999999998886533 3599999999999999886543 33345999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCC------------------------CCceeEEeccCCCCeeEEEEcCCCCeEEEEE
Q 002471 687 RFSPSMPRLATSSFDKTVRVWDADN------------------------PGYSLRTFMGHSASVMSLDFHPNKDDLICSC 742 (918)
Q Consensus 687 ~fspdg~~Lasgs~Dg~V~Iwdl~~------------------------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sg 742 (918)
+..+++.++++|+.|.+|.||+..+ .+.++.++.+|..+|.++.|++ ...++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~ 277 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSV 277 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEee
Confidence 9999999999999999999999321 0234678889999999999998 3467799
Q ss_pred eCCCcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEcCCeEEEEECCCc---eEEEEecCCCCCeEEEEEcCCC
Q 002471 743 DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 743 s~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~si~~spdg 817 (918)
+.|.+|+.||++++.++..+.+ ...++.+++....+++++.|..|++||.+++ -....+.+|...|.++.|+|..
T Consensus 278 SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred cccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC
Confidence 9999999999999998887765 4678899999999999999999999999986 4567889999999999999976
Q ss_pred C-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 818 E-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 818 ~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
. .|++++.| ++++||+|+.. ..++.+..|..+|.++.|. ++..|++|+.|++|+|+...
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 6 78899999 99999999763 4788899999999999997 45679999999999998653
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=257.45 Aligned_cols=245 Identities=25% Similarity=0.454 Sum_probs=215.4
Q ss_pred cceeeee-eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 627 SFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 627 s~~~~~~-l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
....+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.+...+.+|...|.|+...+ .++++|+.|.+|+
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVK 314 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEE
Confidence 4455555 999999999999998788999999999999999999999999999999999998754 4788899999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEE-EecCC-CEEEEEEc
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL-GRYLAAAA 783 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~sp~~-~~ll~~~~ 783 (918)
+|++.+ +.++.++.+|.++|.++.+. ..++++|+.|++|++||+.+++|++++.++...+. +..+. ..++.|+.
T Consensus 315 VW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~ 390 (537)
T KOG0274|consen 315 VWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSL 390 (537)
T ss_pred EEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeee
Confidence 999997 88899999999999999998 34677999999999999999999999998765433 24444 89999999
Q ss_pred CCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc-CCCceEEEEEeCC
Q 002471 784 ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPT 860 (918)
Q Consensus 784 dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~~i~~sp~ 860 (918)
|+.|++||+++. +++.++.+|..-|.++.+. +++|++++.| +|++||..++ .+++.+.. +...|..+++.
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG-- 463 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeecC--
Confidence 999999999999 9999999999999776654 7899999999 9999999877 77777777 56777777775
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE
Q 002471 861 YPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
...+++++.|+.+++||+++++..
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cceEEEEecCCeeEEEecccCchh
Confidence 567999999999999999999877
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=238.33 Aligned_cols=237 Identities=22% Similarity=0.287 Sum_probs=203.2
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
.+.|++++|-.||++||+|+..|.|+|||+.+...++.+.+|..+|..+.|+|. +..|++|++|+.+++||+.+ ....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEE
Confidence 346999999999999999999999999998777788889999999999999994 56788889999999999998 5556
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
..+.+|++.|.|.+|+|-.+++++||+.||+|++||++.. ..+..+. .++..+.+.|.+..++ .+..+.|++||+.
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ia-sAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIA-SAGGNSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEE-EcCCCeEEEEEec
Confidence 7889999999999999999999999999999999999987 5566665 3567788888866555 4556789999999
Q ss_pred Cc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 794 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 794 t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
+| +.+..+..|...|+|+++..++..|++++-| .|++||+.+. +.++.+.- .++|.+|+.+|++..+++|..+|
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeeec-ccceeeEEecCCCceEEEecccc
Confidence 65 5555556699999999999999999999999 9999997554 66666654 78899999999999999999999
Q ss_pred eEEEEECCC
Q 002471 872 SLELWNMSE 880 (918)
Q Consensus 872 ~I~vwd~~~ 880 (918)
.+.+-+...
T Consensus 302 lv~~rr~~~ 310 (487)
T KOG0310|consen 302 LVSIRRREV 310 (487)
T ss_pred eeeeehhhc
Confidence 887765443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=222.41 Aligned_cols=239 Identities=23% Similarity=0.398 Sum_probs=208.5
Q ss_pred eEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce-eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002471 674 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (918)
Q Consensus 674 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd 752 (918)
+.+.+|...|.+|+|+.+|..|++|+.|++++||+++..... -....+|.+.|-.++|+|....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 556789999999999999999999999999999999864221 1345689999999999999999999999999999999
Q ss_pred cCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCE-EEEEeCCeEE
Q 002471 753 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL-LASVSEDSVR 829 (918)
Q Consensus 753 l~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~-Las~s~d~I~ 829 (918)
++.++++.... ++...+.|+|++++++++..|..|.++|.++.+.+...+ ....+..++|+.++.+ +++.+.++|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999988765 456678999999999999999999999999988877654 4556788899877775 4455556888
Q ss_pred EEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002471 830 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 830 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasg 908 (918)
|.... ..+.+..+..|.....||.|+|+|++|++|+.|-.+.+||+.+.-++ .+..++-+|+.|.|+.||++||+|
T Consensus 173 ILsyp---sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYP---SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecc---ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 88875 34788899999999999999999999999999999999999998877 677899999999999999999999
Q ss_pred ecCCcEEE
Q 002471 909 SHDKFVKL 916 (918)
Q Consensus 909 s~Dg~I~I 916 (918)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99998865
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=257.69 Aligned_cols=250 Identities=23% Similarity=0.394 Sum_probs=215.1
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------------------CceeeEeccCCCCeEEEEECC
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSP 690 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~------------------~~~~~~l~~h~~~V~~l~fsp 690 (918)
+.+.....|.+.|+|+.|++||++||+|++|+.|.||+... .+++..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 46677889999999999999999999999999999998652 347788999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec------
Q 002471 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 764 (918)
Q Consensus 691 dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------ 764 (918)
++.+||+++.|++|.||+..+. ..++++.+|...|..+.|.|-|. +|++-+.|++|+||++.+..+.+.+.+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999984 88999999999999999999977 566999999999999887666665543
Q ss_pred ---CceEEEEecCCCEEEEEEc----CCeEEEEECCCceEEEEecCCCCCeEEEEEcCC-------------CC----EE
Q 002471 765 ---GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-------------GE----LL 820 (918)
Q Consensus 765 ---~~~~v~~sp~~~~ll~~~~----dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-------------g~----~L 820 (918)
....+.|+|+|.+|++... ..++.|++-.+.+.-..|.+|..++.+++|+|. .+ .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 2356789999999988754 348999999999999999999999999999981 11 67
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
|+|+.| +|.||.....+..-.++.+ ....|..+.|+|||-.|++++.||+|.++.+...+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhh--hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 888999 9999998665444444433 36789999999999999999999999999997754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=221.85 Aligned_cols=269 Identities=18% Similarity=0.256 Sum_probs=216.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
-.+.|.+|.|++.+..|++++.||++++||+........+ .|..+|.+++|.+ ...+++|+.||.|+.+|+.+. ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC--cc
Confidence 3678999999999999999999999999999887555555 4899999999986 568999999999999999973 34
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 796 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~ 796 (918)
..+-.|...|.||.+++..+ .+++|+.|++|++||.+...+...+.......+.+..++.|++|+.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 55667999999999998755 45599999999999999877777776666667778888999999999999999999876
Q ss_pred EEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEeccCC---------CceEEEEEeCCCCE
Q 002471 797 CRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNG---------NKFHSCVFHPTYPS 863 (918)
Q Consensus 797 ~~~~l~--~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-~~~~~i~~~~~~~---------~~i~~i~~sp~g~~ 863 (918)
.....+ ..+-.++||++.|++.-+++++-+ .|.+=.++.. ........|++|. .+|++++|||-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 554322 234568999999988855666655 6655544433 1123334455553 36899999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEec
Q 002471 864 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 910 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~ 910 (918)
|++|+.||.|.+||+...+.+ .+...+..|.+++|+.+|..||+++.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999998887 56667788999999999999999874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=226.89 Aligned_cols=291 Identities=14% Similarity=0.238 Sum_probs=228.0
Q ss_pred ccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 557 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 557 ~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
..-.|++||...++ +.+++|+|++..--+.....+... +.. -.-..+++
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~--------------~~q--------------a~hPvIRT 167 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG--------------DTQ--------------ARHPVIRT 167 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC--------------Ccc--------------cCCceEee
Confidence 35689999998887 445688877543221111111100 000 02346788
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
|-.|.+.|+++.|+|...+|++|+.|++|++||+......+.++ .....|.+|.|+|.|.+|++|..--++++||+++
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 89999999999999999999999999999999998654444443 3566899999999999999999999999999998
Q ss_pred CCceeEEe---ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCCCEEEEEEc
Q 002471 712 PGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 712 ~~~~~~~~---~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~ll~~~~ 783 (918)
..+.... ..|.+.|+++.+++.+. +.++++.||.|++||--+++|++++.. .+.+..|..+++++++.+.
T Consensus 248 -~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 248 -YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred -eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 4444332 36999999999999976 556999999999999999999998853 4566779999999999999
Q ss_pred CCeEEEEECCCceEEEEecCCC--C---CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 784 ENVVSILDAETQACRLSLQGHT--K---PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~h~--~---~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
|..|++|++.+++++.++.+-. + --+...|+....|++.-.+. .++-||.++...... .-.+|.+.+..+.
T Consensus 326 DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a~R~i~ 403 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGAVRWIV 403 (430)
T ss_pred cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCCceEEE
Confidence 9999999999999999887642 1 12345688888888887766 799999998754322 2346789999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
-+|.+..|++|+.|..+++|--+
T Consensus 404 HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eCCCCCceeeecccceeeeeeec
Confidence 99999999999999999999643
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-24 Score=239.07 Aligned_cols=297 Identities=15% Similarity=0.253 Sum_probs=236.4
Q ss_pred cccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEE
Q 002471 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATS 698 (918)
Q Consensus 620 ~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasg 698 (918)
+.+++.-+-+.+.++.++.+.|+++.=+|-=..+|.|..+|+|.|++++.++.+.+|+..-+.|+.++|..||+. +++|
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 444444466899999999999999999998889999999999999999999999999966799999999999985 5666
Q ss_pred eCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---------------------
Q 002471 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--------------------- 757 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--------------------- 757 (918)
+..|.+.+||++...........|.+.|..+.|.+.. .++++++.|+.+++|=.+++.
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence 6679999999997433333333566666666666543 344455556555544221000
Q ss_pred --------------------------------------------------------------------------------
Q 002471 758 -------------------------------------------------------------------------------- 757 (918)
Q Consensus 758 -------------------------------------------------------------------------------- 757 (918)
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence
Q ss_pred -----------e-eEEe--------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe---cCCCCCeEEEEEc
Q 002471 758 -----------C-TRVF--------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWD 814 (918)
Q Consensus 758 -----------~-~~~~--------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~si~~s 814 (918)
. ...+ ...+.+++.++.|+..+.|.+.|.|.+|++.+|-....+ ..|..+|+.++.+
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD 502 (910)
T ss_pred eEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec
Confidence 0 0000 012345677888888999999999999999999988888 4799999999999
Q ss_pred CCCCEEEEEeCC-eEEEEECCCCC--------------------------------------CcceEEEeccCCCceEEE
Q 002471 815 PSGELLASVSED-SVRVWTVGSGS--------------------------------------EGECVHELSCNGNKFHSC 855 (918)
Q Consensus 815 pdg~~Las~s~d-~I~iwdl~s~~--------------------------------------~~~~i~~~~~~~~~i~~i 855 (918)
.-++.+++++.+ .+++||+.... ..+.++.+.+|.+.|+.+
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 988888888888 89999987542 012234567789999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC-CcEEEe
Q 002471 856 VFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 917 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D-g~I~IW 917 (918)
+|+|||++|++++.|++|++||+.++.++-...-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999999999999999999999999888889999999999999999999988 669999
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=245.14 Aligned_cols=242 Identities=16% Similarity=0.258 Sum_probs=187.6
Q ss_pred eeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCe
Q 002471 633 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT 703 (918)
Q Consensus 633 ~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~ 703 (918)
.+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. +.+..+.+|...|.+|+|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999754 3567889999999999999975 69999999999
Q ss_pred EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc----eEEEEecCCCEEE
Q 002471 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRYL 779 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~~v~~sp~~~~ll 779 (918)
|+|||+++ +..+..+.+|...|.+++|+|++. +|++++.|+.|+|||+++++.+..+.++. ..+.|.++++.++
T Consensus 150 VrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 150 VNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 99999997 677888899999999999999976 56699999999999999999888776542 3567888888888
Q ss_pred EEEc----CCeEEEEECCCce-EEEEecC-CCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEecc-CCC
Q 002471 780 AAAA----ENVVSILDAETQA-CRLSLQG-HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC-NGN 850 (918)
Q Consensus 780 ~~~~----dg~I~i~D~~t~~-~~~~l~~-h~~~V~si~~spdg~~Las~s~-d-~I~iwdl~s~~~~~~i~~~~~-~~~ 850 (918)
+++. |+.|++||+++.. ++..+.. +...+....|++++.+|++++. | .|++||+.++. .+..... ...
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~ 304 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVE 304 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCC
Confidence 7653 7899999998764 3333332 3345666789999998888773 5 99999998764 2322222 344
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
.+..++|.|... +-.......++|.+...
T Consensus 305 ~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 305 PHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCcceEeccccc--ccccceeeeEEEEecCC
Confidence 567778877532 11111223456655443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=239.64 Aligned_cols=293 Identities=19% Similarity=0.292 Sum_probs=236.8
Q ss_pred CCCCCCCCccccCCCCCCCCCCcccEEEEcCCCeeecc-CCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCC
Q 002471 534 PSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTS-PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDP 612 (918)
Q Consensus 534 ~~~~t~~~~~~~~~~~~~~~~~k~~~~fs~dg~~~~~~-~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~ 612 (918)
.-..+|.+.+.++.+.+.-. -.++.++..+.+.++. ..+.+|+..++.+
T Consensus 160 ~~~~~p~rvLDaP~l~dDfY--~nlldWss~n~laValg~~vylW~~~s~~v---------------------------- 209 (484)
T KOG0305|consen 160 KIPQTPYRVLDAPGLQDDFY--LNLLDWSSANVLAVALGQSVYLWSASSGSV---------------------------- 209 (484)
T ss_pred cccCChhhhccCCcccccHh--hhHhhcccCCeEEEEecceEEEEecCCCce----------------------------
Confidence 44566666776666554332 2366677666665553 3557787765542
Q ss_pred CCCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCC
Q 002471 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPS 691 (918)
Q Consensus 613 ~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspd 691 (918)
..+..+ +.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-|++|.
T Consensus 210 ----------------~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-- 269 (484)
T KOG0305|consen 210 ----------------TELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-- 269 (484)
T ss_pred ----------------EEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--
Confidence 111111 267899999999999999999999999999999999999998 99999999998
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceE
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQ 768 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~ 768 (918)
+..+.+|+.|+.|.++|++.....+.++.+|...|..+.|++++. ++++|+.|+.|.|||.........+ .+.+..
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence 678999999999999999986666666889999999999999976 5679999999999999666655555 456778
Q ss_pred EEEecCCCEEEEEEc---CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEE-EeCC--eEEEEECCCCCCcceE
Q 002471 769 MRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS-VSED--SVRVWTVGSGSEGECV 842 (918)
Q Consensus 769 v~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las-~s~d--~I~iwdl~s~~~~~~i 842 (918)
++|+|....+++.+. |+.|++||..+++.+..+. ....|.+|.|++..+-|++ .+.. .|.||++.+. +.+
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~ 424 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLV 424 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---cee
Confidence 899998876666443 8999999999999888765 4678999999998874444 4433 8999999774 788
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
..+.+|...|..++++|||..|++++.|.+++||++-..
T Consensus 425 ~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 AELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 899999999999999999999999999999999998774
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=233.45 Aligned_cols=242 Identities=23% Similarity=0.419 Sum_probs=212.2
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
....+.+|.+..+.|+++.|.++++++++++.|+.+++|+++..+...+|.+|.+.|+++.|......+++|+.|.+|++
T Consensus 208 k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 208 KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL 287 (459)
T ss_pred hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhh
Confidence 35678889999999999999999999999999999999999999999999999999999999988777999999999999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcC
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~d 784 (918)
||+.. ..|.+++. ....+.+|+.. ...+++|-.|++|++||+++..++.... +.+.++..+.++..+++++.|
T Consensus 288 WDl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 288 WDLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred hhhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 99997 77777665 34557777776 3356699999999999999999988776 467889999999999999999
Q ss_pred CeEEEEECCCceEEEEecCC----CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCC--ceEEEEE
Q 002471 785 NVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN--KFHSCVF 857 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h----~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~--~i~~i~~ 857 (918)
+++.++|+++...+..+... ...++.++|+|++.|+++|+.| .|+||++.++ ++...+..... .|++++|
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEE
Confidence 99999999999888877642 2348889999999999999999 9999999887 55555554444 5999999
Q ss_pred eCCCCEEEEEEcCCeEEEE
Q 002471 858 HPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vw 876 (918)
+|.|..+++++.++.+.+|
T Consensus 440 ~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 440 NPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCchhhcccCCcceEec
Confidence 9999999999999999999
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=239.10 Aligned_cols=274 Identities=18% Similarity=0.309 Sum_probs=228.6
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eeEeccCCCCeEE-EEECC-CCCEEEEEeCCC
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITD-VRFSP-SMPRLATSSFDK 702 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~--~~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg 702 (918)
.++.-+++++|...|..|++.+.. .++++|.||+++||+-..... ...+.+|.+.|.+ ++|.+ ++-+|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356678899999999999877654 899999999999999754333 3557788888888 88886 555799999999
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYL 779 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll 779 (918)
+|.+|.+.. ..++.++++|...|+|+....++. +++|+.|.++++|-+. ++...+.++ +-.+...|++ .++
T Consensus 82 ~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred eEEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEE
Confidence 999999987 789999999999999999876654 5599999999999864 455555554 4456667775 999
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
+|+.|.+|++|.. ++++.+|.+|.+.|+.+++-+++. |++|+.| .|++|++ ++ .++.++.+|.+.++++...
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEec
Confidence 9999999999987 788899999999999999998655 5566666 9999999 33 7899999999999999988
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 859 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~-~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.++..|+++++|++++||+.. ++.....|.. .|+++.+-++|. |++|+.||.||||
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 888899999999999999987 5554445554 899999988886 6678889999998
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=217.77 Aligned_cols=283 Identities=20% Similarity=0.282 Sum_probs=213.3
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee--eEec--cCCCCeEEEEECCCCCEEEEEe-CCCeEE
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE--EHSSLITDVRFSPSMPRLATSS-FDKTVR 705 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~--~~l~--~h~~~V~~l~fspdg~~Lasgs-~Dg~V~ 705 (918)
+..|++|.+.|+|++|+.||++|||++.|++|+||++++.... +.++ ..-+.-+.++|.||-+-+++.. ...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4578999999999999999999999999999999999864321 1111 1223568899999987665554 466799
Q ss_pred EEeCCCC--C-cee--------EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEE
Q 002471 706 VWDADNP--G-YSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRF 771 (918)
Q Consensus 706 Iwdl~~~--~-~~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~ 771 (918)
+|.+... + ... ..-+.|.-.|..+-... +..+|++|+.|..|.+|+++ |..+..+.. .....++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9977531 1 111 11223555666665554 45577799999999999999 777776654 3456789
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---Cc-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC----CC
Q 002471 772 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE 838 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~---t~-----~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~----~~ 838 (918)
+|+|.++++++..-.|++|++- .| ..++.+++|...|..++|+++.+.+++.+.| +++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999753 22 3567789999999999999999999999999 9999998532 22
Q ss_pred cceEEEe----ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 839 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 839 ~~~i~~~----~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
.+.+++. ...+..-..+..+|.|..|++.. ...|++|..++++.. ....|...|.+|+|+++|+++++++ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 2333332 12233445889999999766654 458999999998877 3457999999999999999999987 66
Q ss_pred cEEEe
Q 002471 913 FVKLW 917 (918)
Q Consensus 913 ~I~IW 917 (918)
.++|+
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 77765
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=228.30 Aligned_cols=271 Identities=20% Similarity=0.284 Sum_probs=220.3
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceee----E-------------e-ccCCCCeEEEEECCCC
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----N-------------L-EEHSSLITDVRFSPSM 692 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~----~-------------l-~~h~~~V~~l~fspdg 692 (918)
+..+..|.-+|+||++++|++++++++.|++|.-|++.+++... . - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999999999999999999999999988766331 1 1 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEE
Q 002471 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM 769 (918)
Q Consensus 693 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v 769 (918)
+|||+|+.|..|.||+.++ ...+..+.+|.+.|.+++|-.....++ +++.|+.|++|++.....+.++.++ +..+
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~ly-s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSELY-SASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCcccee-eeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998 778889999999999999987655554 9999999999999988777776654 4445
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec--
Q 002471 770 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-- 846 (918)
Q Consensus 770 ~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~-- 846 (918)
........+-+++.|+++++|++. .+....+.++.+.+.|++|-. ...|++|+++ .|.+|++-+.+. ++...
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkp---lf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKP---LFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCc---eeEeecc
Confidence 555555566666789999999994 344556778899999999986 4567788888 999999976532 22211
Q ss_pred ----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc----EEEEcccCCCeEEEEEeCCCCEEEEE
Q 002471 847 ----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----TMTLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 847 ----------~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~----~~~~~~h~~~V~~la~spdg~~Lasg 908 (918)
.+..+|++++..|....+++|+.+|+|++|-+.++- ++.-..-.+.|++|+|+++|++|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 112378999999999999999999999999998882 23333477899999999999966655
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=232.79 Aligned_cols=276 Identities=18% Similarity=0.297 Sum_probs=233.0
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeeEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~---~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
-.|..-|.++.+|...++++||+ .|.|+|||+.. ...+..+. .....|+++.+.|||+.|++|++-.+|.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 36888999999999999999997 57899999873 23334443 24567999999999999999999999999999
Q ss_pred CCCCceeEE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCC
Q 002471 710 DNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 710 ~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg 785 (918)
..+...++. +..-.-.+++++.+||.+ +.++|..||.|.|||+.+...++.|.+ +..|+.++++|.+|.+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 875544432 333335678899999966 555888899999999999999999986 468899999999999999999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
+|+.||+++++.+.... ....|.++.++|.+.+|++|-++ .|.|...... ..+.+..|+..|.++.|.+.|+++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCcee
Confidence 99999999987665432 45789999999999999999988 7877776543 345566778999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 865 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
++.+.|+.+..|...-|..+.-......|.++.++.|++||+||+.|+...||
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999999999888777788999999999999999999999888776
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-23 Score=198.95 Aligned_cols=247 Identities=19% Similarity=0.341 Sum_probs=208.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccCCCCeEEEEECCC----CCEEEEEe
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPS----MPRLATSS 699 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-----~~~~l~~h~~~V~~l~fspd----g~~Lasgs 699 (918)
...+.-+.|.+.|+|++|+|+|.+||+|+.|++|++.-+.... ....|.-|.+.|.+++|-.+ +.+|++++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 3445567899999999999999999999999999998665322 23457789999999999753 55777776
Q ss_pred C-CCeEEEEeCCCCCceeEEeccCCCCeeEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----------Cce
Q 002471 700 F-DKTVRVWDADNPGYSLRTFMGHSASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTA 767 (918)
Q Consensus 700 ~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----------~~~ 767 (918)
. |..|++-|... +..+..+.+|.+.|.++. |+ +.+|++|+.|.+|++||++-..|+.++.. .+.
T Consensus 160 agdc~iy~tdc~~-g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 160 AGDCKIYITDCGR-GQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred CCcceEEEeecCC-CCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 5 77888888887 778899999999998874 33 56888999999999999999999887642 346
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEe
Q 002471 768 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHEL 845 (918)
Q Consensus 768 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-~~~~~i~~~ 845 (918)
.+++.|.+..++++-.|....+||++.++.+..+..|...|+|+.|+|...|+++++.| .|++-|+... .....+...
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 68899999999999999999999999999999999999999999999999999999999 9999998643 122345556
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
..|..++..|.|+|..-.|++.+.|+++.+|-+.
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 6788899999999999999999999999999764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-24 Score=214.52 Aligned_cols=275 Identities=20% Similarity=0.304 Sum_probs=222.6
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEec
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 55666665
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEe-----ecCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVF-----KGGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 721 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~-----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
...+|+...|+|...+.++++-.+..-.+.++...+ ++..- .....+..|.+.++++++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 788999999999877777666666556666655432 22111 1112334588999999999999999999999
Q ss_pred CceEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC------CcceEEEec--cCCCceEEEEEeCCCCE
Q 002471 794 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------EGECVHELS--CNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 794 t~~~~~~l~~h~-~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~------~~~~i~~~~--~~~~~i~~i~~sp~g~~ 863 (918)
+.+++..++-.. ..|..|.|+-.|++|+.-+.| .||.|+++.-. +.+..+.+. .......+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999988766 789999999999999999999 99999986321 111112111 11334568899999999
Q ss_pred EEEEEcC-CeEEEEECCCCcEE-EEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 864 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 864 l~s~s~d-g~I~vwd~~~~~~~-~~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+++++.. ..++||....|.++ .+.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9888754 48999999999988 566666 578899999998888877 788999993
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=221.52 Aligned_cols=262 Identities=13% Similarity=0.114 Sum_probs=204.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 728 (918)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+ +..+..+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCCC-ccE
Confidence 35788999999999999999998888876544 7789999999977 5667789999999987 555555554433 567
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEecCCC
Q 002471 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHT 805 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~ 805 (918)
++|+|+++.++++++.|+.|++||+++.+.+..+.. ....+.|+|++..++++..++ .+.+||.++++....+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 899999887877777899999999999888777753 356789999999998888765 577889998877665432 3
Q ss_pred CCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeccC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 002471 806 KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLEL 875 (918)
Q Consensus 806 ~~V~si~~spdg~~Las~s-~d-~I~iwdl~s~~~~~~i~~~~~~-------~~~i~~i~~sp~g~~l~s~-s~dg~I~v 875 (918)
..+.+++|++++.+|++++ .+ .|++||+++++ ++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK---VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 3567899999999776554 45 99999998773 33322211 1123468899999986664 45678999
Q ss_pred EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE-ecCCcEEEeC
Q 002471 876 WNMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 918 (918)
Q Consensus 876 wd~~~~~~~~~~~h~~~V~~la~spdg~~Lasg-s~Dg~I~IWd 918 (918)
||+.+++.+....+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887554566689999999999999886 4689999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=235.98 Aligned_cols=246 Identities=24% Similarity=0.337 Sum_probs=213.2
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP---SMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~Dg~V~Iwdl 709 (918)
..-+....|+|++.||+|.+||+|..-|+++||++...+....++.|...|.|+.|+. ..++||+++.|..|.|||+
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 3345566799999999999999999999999999999999999999999999999987 3578999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--------ecCceEEEEecCCCEEEE
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--------KGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--------~~~~~~v~~sp~~~~ll~ 780 (918)
.....++.++.+|...|++|.|.-.| +.-+++|+.|..|.+--.........| +.....+.+.|..+++++
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 98777889999999999999998765 334459999988865443322111122 233466889999999999
Q ss_pred EEcCCeEEEEECCCceEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 781 AAAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~---h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
++.|..|+|||+.+++.++.|++ |++....+..+|.|.||++.+.| ++.+||+.++ +|+..+.+|...|+.+.
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeee
Confidence 99999999999999999999986 66778889999999999999999 9999999888 89999999999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
|.+|.+.|++.+.||+|.||.+...
T Consensus 691 F~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ecccchhheeecCCceEEEEECchh
Confidence 9999999999999999999998653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=208.54 Aligned_cols=246 Identities=20% Similarity=0.341 Sum_probs=205.1
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEe-CCCcE
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEI 748 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I 748 (918)
.+..+.+......|++|.|+.+|.+|++++.|.+|+|||..+ +..++++..+...|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 445566666788999999999999999999999999999998 7888888888888999999877666664332 38899
Q ss_pred EEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 749 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 749 ~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
|+.++.+.+.++.|.++ +..++.+|.+..+++++.|++|++||++..++...+.....+ .++|+|.|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 99999999999999886 467889999999999999999999999988887766543333 4689999999999998
Q ss_pred C-eEEEEECCCCCCcc-eEEEec-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC---eEEEEE
Q 002471 826 D-SVRVWTVGSGSEGE-CVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL---IAALAV 898 (918)
Q Consensus 826 d-~I~iwdl~s~~~~~-~i~~~~-~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~---V~~la~ 898 (918)
. .|++||+++..... ....+. ........+.|+|+|++|+.+...+.+++.|.-+|.+. .+..+... -...+|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 8 99999999864322 222222 44677899999999999999999999999999999977 55554432 267789
Q ss_pred eCCCCEEEEEecCCcEEEeC
Q 002471 899 STETGYVASASHDKFVKLWK 918 (918)
Q Consensus 899 spdg~~Lasgs~Dg~I~IWd 918 (918)
+||+++|++|+.||+|++|+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCCcEEEEecCCCcEEEEE
Confidence 99999999999999999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=235.58 Aligned_cols=228 Identities=16% Similarity=0.225 Sum_probs=175.8
Q ss_pred eeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCc--------eeeEeccCCCCeEEEEECCCCCE-EEEE
Q 002471 629 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSPSMPR-LATS 698 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~~~--------~~~~l~~h~~~V~~l~fspdg~~-Lasg 698 (918)
..+..+.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.+|+|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 467789999999999999996 7899999999999999997532 34567899999999999998876 5789
Q ss_pred eCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce---E-E----E
Q 002471 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---Q-M----R 770 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~-v----~ 770 (918)
+.|++|+|||+++ +..+..+. |...|.+++|+++|. +|++++.|+.|+|||+++++.+..+.++.. . . .
T Consensus 145 S~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 145 GFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred eCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 9999999999997 44455554 667899999999977 556888899999999999998888776432 1 1 2
Q ss_pred EecCCCEEEEEEcCC----eEEEEECCC-ceEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 002471 771 FQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 842 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg----~I~i~D~~t-~~~~~~l~~--h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i 842 (918)
|+++++++++++.++ .|+|||++. .+++..+.. +...+......+++.++++|+.| .|++|++..+. ...+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEee
Confidence 347888999988764 799999995 455554432 23333334344568889999888 99999997652 2333
Q ss_pred EEeccCCCceEEEEEeCCC
Q 002471 843 HELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g 861 (918)
..+. +..++.+++|.|..
T Consensus 301 ~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred cccc-cCCCccceEEcccc
Confidence 3333 45677888998864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-24 Score=225.23 Aligned_cols=247 Identities=18% Similarity=0.370 Sum_probs=204.1
Q ss_pred eeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCC----------ceeeEeccCCCCeEEEEECCC-CCEEEEEeC
Q 002471 633 SVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL----------KSKTNLEEHSSLITDVRFSPS-MPRLATSSF 700 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~~----------~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~ 700 (918)
..-.|.+.|+.+.+-|. ..++|+++..+.|.|||..+. .+..++.+|.+.-+.|+|++. .-+|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 33469999999999994 467888889999999997632 222378899998899999995 347999999
Q ss_pred CCeEEEEeCCCCCc------eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecC
Q 002471 701 DKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 774 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~ 774 (918)
|++|++||+..... ....+.+|...|..++|++....+|++++.|+.+.|||+|++.
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~----------------- 261 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT----------------- 261 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-----------------
Confidence 99999999975433 3567889999999999999999999999999999999998631
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce
Q 002471 775 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
.++.....+|...|.|++|+|-+ .+||+|+.| +|++||+|+.. .+++.+.+|...|
T Consensus 262 --------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev 319 (422)
T KOG0264|consen 262 --------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEV 319 (422)
T ss_pred --------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcce
Confidence 12223346799999999999954 588999988 99999999765 5899999999999
Q ss_pred EEEEEeCCC-CEEEEEEcCCeEEEEECCCC--------------cE-EEEcccCCCeEEEEEeCCCCE-EEEEecCCcEE
Q 002471 853 HSCVFHPTY-PSLLVIGCYQSLELWNMSEN--------------KT-MTLTAHEGLIAALAVSTETGY-VASASHDKFVK 915 (918)
Q Consensus 853 ~~i~~sp~g-~~l~s~s~dg~I~vwd~~~~--------------~~-~~~~~h~~~V~~la~spdg~~-Lasgs~Dg~I~ 915 (918)
.++.|+|.. ..|++++.|+.+.|||+..- ++ +.-.+|...|..+.|+|+..+ |+|+++|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 999999976 56778889999999998641 11 255689999999999998875 77899999999
Q ss_pred EeC
Q 002471 916 LWK 918 (918)
Q Consensus 916 IWd 918 (918)
||+
T Consensus 400 IW~ 402 (422)
T KOG0264|consen 400 IWQ 402 (422)
T ss_pred Eee
Confidence 996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=205.76 Aligned_cols=231 Identities=21% Similarity=0.297 Sum_probs=207.3
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002471 675 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (918)
Q Consensus 675 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 754 (918)
.+.+|..+++-|.|+.+|.+|++|+.|.++.||-..+ ++.+.++.+|.+.|+|++..-+.+.++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 4678999999999999999999999999999998876 788999999999999999998877655 99999999999999
Q ss_pred CCeeeEEeec--CceEEEEecCCCEEEEEEc-----CCeEEEEECC-------CceEEEEecCCCCCeEEEEEcCCCCEE
Q 002471 755 NGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-----ENVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGELL 820 (918)
Q Consensus 755 ~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-----dg~I~i~D~~-------t~~~~~~l~~h~~~V~si~~spdg~~L 820 (918)
+|+++..++. .+..+.|+.+++.++++.. .+.|.++|++ ..++...+..+.+.++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999988875 5677899999998888765 4689999998 456788888899999999999999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEe
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 899 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~s 899 (918)
++|.++ .|.+||++++. ..+.....|...|+.+.++++..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 999999 99999999874 455666778889999999999999999999999999999999999888889999999999
Q ss_pred CCCCEEEEEe
Q 002471 900 TETGYVASAS 909 (918)
Q Consensus 900 pdg~~Lasgs 909 (918)
|...+++.|+
T Consensus 241 P~~d~VilgG 250 (327)
T KOG0643|consen 241 PLLDHVILGG 250 (327)
T ss_pred cccceEEecC
Confidence 9887777665
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=231.34 Aligned_cols=251 Identities=20% Similarity=0.347 Sum_probs=214.5
Q ss_pred CCCCcccccccCccceeeeeeecCCCCeEE-EEEcc-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC
Q 002471 614 DAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (918)
Q Consensus 614 ~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~-l~fsp-dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspd 691 (918)
|...+.|+.... .+.+...+.+|.+.|.+ ++|-+ ++-+|++|+.|++|.+|......++.++++|...|+|++...+
T Consensus 34 d~t~~vw~~~~~-~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~ 112 (745)
T KOG0301|consen 34 DGTVKVWAKKGK-QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED 112 (745)
T ss_pred CCceeeeeccCc-ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc
Confidence 333444443322 55666778899999988 88885 5567999999999999999999999999999999999998888
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEE-
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR- 770 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~- 770 (918)
+. |++||.|.+++||... .+...+.+|...|+++.+.|++ .++||+.|.+|++|.- ++++++|.++..+++
T Consensus 113 ~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRg 184 (745)
T KOG0301|consen 113 GT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRG 184 (745)
T ss_pred Cc-eEecccccceEEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchhheee
Confidence 76 9999999999999874 4666799999999999999986 4559999999999986 788899998876654
Q ss_pred -EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC
Q 002471 771 -FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 771 -~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
..-++..|++++.||.|++|++ +++++.++.+|...|.++....++..++++++| +++||+.. .|...+...
T Consensus 185 L~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lP 258 (745)
T KOG0301|consen 185 LAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLP 258 (745)
T ss_pred eEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEecC
Confidence 2234468999999999999999 899999999999999999988889999999999 99999975 677777777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
...|+++.+-++|. |++|++||.|+||....
T Consensus 259 ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 77899999988887 89999999999998764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=219.93 Aligned_cols=282 Identities=18% Similarity=0.270 Sum_probs=234.8
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~--~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~ 712 (918)
...+.|+||.|+|...+|++|+.||+++||.++ ....+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 346789999999999999999999999999887 4456677777788999999999999 8999999999999999873
Q ss_pred Cc-eeEEeccCC-CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEE
Q 002471 713 GY-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 713 ~~-~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.. .+....++. ..+..+..++++. +|+..+..|.|.+....+++.+..++ +.+..++|+.++..+++++.+|.|+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 32 123333443 3567788899977 55688899999999999999887765 6678899999999999999999999
Q ss_pred EEECCCceEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 789 ILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~-~V~si~~spdg~~Las~s~d-~I~iwdl~s~---~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
+||++...+++.+....+ .-+++|.+.++.|||+|++. -|.|||..+. ...+++..+..-...|+++.|+++...
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 999999999998875322 34677888999999999998 8999997643 445677777777888999999999999
Q ss_pred EEEEEcC--CeEEEEECCCCcEEE-E---cccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 864 LLVIGCY--QSLELWNMSENKTMT-L---TAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 864 l~s~s~d--g~I~vwd~~~~~~~~-~---~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|+.++.. +.+++-.+.+..+.. + ...-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 9888764 589999998887772 2 23446799999999999999999999999996
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-23 Score=208.31 Aligned_cols=255 Identities=20% Similarity=0.323 Sum_probs=199.6
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEe
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~----~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwd 708 (918)
.+|.+-|.|+.|...|+++|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..||++|.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4789999999999999999999999999999964 4567777889999999999976 488999999999999997
Q ss_pred CCCC--------CceeEEeccCCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEE
Q 002471 709 ADNP--------GYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 779 (918)
Q Consensus 709 l~~~--------~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll 779 (918)
-... -....++......|++|+|.|.. +..+++++.||+||||+.-.--.+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~------------------ 151 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ------------------ 151 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc------------------
Confidence 6321 12345666788899999999963 34577999999999998754322211
Q ss_pred EEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEECCCCC-CcceEEEecc
Q 002471 780 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC 847 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spd---g~~Las~s~d------~I~iwdl~s~~-~~~~i~~~~~ 847 (918)
|.+... ..+.....+..+..|+.|++. ..+|++|+++ .++||...... +...+.++..
T Consensus 152 ----------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 152 ----------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ----------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 111100 000011235667889999974 3489999887 79999887654 6677888889
Q ss_pred CCCceEEEEEeCC----CCEEEEEEcCCeEEEEECCCCc--------------------EE-EEcccCCCeEEEEEeCCC
Q 002471 848 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET 902 (918)
Q Consensus 848 ~~~~i~~i~~sp~----g~~l~s~s~dg~I~vwd~~~~~--------------------~~-~~~~h~~~V~~la~spdg 902 (918)
+..+|+.++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999996 35688999999 9999987411 12 466899999999999999
Q ss_pred CEEEEEecCCcEEEeC
Q 002471 903 GYVASASHDKFVKLWK 918 (918)
Q Consensus 903 ~~Lasgs~Dg~I~IWd 918 (918)
.+|++.|+||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=207.32 Aligned_cols=245 Identities=22% Similarity=0.306 Sum_probs=200.9
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---ceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl 709 (918)
..|.+.|.++...-.|++|||++.|++|+||.++.. +.+.+|.+|.++|..++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 479999999999999999999999999999998743 67889999999999999976 7999999999999999998
Q ss_pred CCCC-ceeEEeccCCCCeeEEEEcCCCC-eEEEEEeCCCcEEEEEcCCC------eeeEEeecCceEEEEecC---C---
Q 002471 710 DNPG-YSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L--- 775 (918)
Q Consensus 710 ~~~~-~~~~~~~~h~~~V~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~------~~~~~~~~~~~~v~~sp~---~--- 775 (918)
.++. .....+..|...|++|+|.|.+- .+|++++.||.|.|.+++.. +.......++++++|.|. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8742 12345668999999999999743 45678889999999998765 222334457788888876 3
Q ss_pred --------CEEEEEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEEEEECCCCCCcc
Q 002471 776 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE 840 (918)
Q Consensus 776 --------~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spdg----~~Las~s~d-~I~iwdl~s~~~~~ 840 (918)
.+|++++.|+.|+||+...+ +...++.+|.+.|+.++|.|.- .+|++++.| +|.||..+.....-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999998876 3445588999999999999954 389999999 99999987432322
Q ss_pred eEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 841 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 841 ~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
....+......+..+.|+..|..|++++.|+.|.+|.-.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 333344446779999999999999999999999999654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=221.27 Aligned_cols=359 Identities=16% Similarity=0.242 Sum_probs=248.0
Q ss_pred CCCcccEEEEcCCCeeeccCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCC---CCCCCCCcccccccC-cc-
Q 002471 553 TTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT---DPRDAGGRGMDVSQG-FS- 627 (918)
Q Consensus 553 ~~~k~~~~fs~dg~~~~~~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~---~~~~~~~~~~d~~~~-~s- 627 (918)
...+.+.+...+.+++++...+.|+-.+.|+...+.... ...++...+...+. ...+....+|+.... ..
T Consensus 74 ~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~-----~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLL-----HGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecCcEEEEEEccceEEEEecc-----ccceEEEEeeecceEEEEEccCcEEEEEeccccccc
Confidence 344556667777777776555555444444332221111 11222222221111 112223334444332 01
Q ss_pred ceeeeeeecCCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
......++.-.+.|+++ ++|.. +.|+.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..+|.|..+|+|.
T Consensus 149 ~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI 227 (910)
T ss_pred cccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE
Confidence 11122233333337776 45543 6789999999999999999999999999999999999999888999999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceEEEEecCCCEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ll~~ 781 (918)
|++++. ++.+..|+..-+.|++++|..||..++++++..|.+.+||++..+...... +.+....|.+....++++
T Consensus 228 ifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 228 IFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec
Confidence 999998 778888885569999999999999999999999999999999887665543 334445555555555555
Q ss_pred EcCCeEEEE--EC-------------------------------------------------------------------
Q 002471 782 AAENVVSIL--DA------------------------------------------------------------------- 792 (918)
Q Consensus 782 ~~dg~I~i~--D~------------------------------------------------------------------- 792 (918)
+.|+.+++| |.
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 555544443 31
Q ss_pred -------------------------------------------CCceE-EEEec-----CCCCCeEEEEEcCCCCEEEEE
Q 002471 793 -------------------------------------------ETQAC-RLSLQ-----GHTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 793 -------------------------------------------~t~~~-~~~l~-----~h~~~V~si~~spdg~~Las~ 823 (918)
++... .+.+. .....+++++.++.|++.+.|
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence 11000 00000 011356788888889988888
Q ss_pred eCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------------------
Q 002471 824 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------------------ 884 (918)
Q Consensus 824 s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~------------------ 884 (918)
+.. .|.+|++.+|-.......-..|..+|+.++....++.+++++.+|.+++||..++..+
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS 546 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence 776 9999999887333333233578899999999999999999999999999998765310
Q ss_pred ------------------------EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 885 ------------------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 ------------------------~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+.+|.+.|++++|+|||++|++++.|++||+||
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2345999999999999999999999999999998
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=204.89 Aligned_cols=229 Identities=17% Similarity=0.304 Sum_probs=188.9
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA 709 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl 709 (918)
+....|.++|.|++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+... .|+|||.|++|+.||.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 345579999999999999999999999999999999998 5778888999999999988665 8999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----EEeecCceEEEEecCCCEEEEEEcC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----~~~~~~~~~v~~sp~~~~ll~~~~d 784 (918)
+. ..++.++. -.+.|+++..-. .+++.+..+..|.+|+++++... ..++--+.++++..+...++.|+-+
T Consensus 145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 97 55666555 456788877653 36677888999999999876432 2234467889988898888999999
Q ss_pred CeEEEEECCCc--eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce
Q 002471 785 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 785 g~I~i~D~~t~--~~~~~l~~h~~---------~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
|.+.|..+..+ +.-++|+.|+. .|++|+|+|....|++++.| ++.+||-... ..++....+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 99999988776 66667777763 47889999988888887777 9999998654 5566777789999
Q ss_pred EEEEEeCCCCEEEEEEc
Q 002471 853 HSCVFHPTYPSLLVIGC 869 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~ 869 (918)
+++.|+.+|.+++.+..
T Consensus 297 tcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceeEecCCCCEEEEEee
Confidence 99999999998877654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-24 Score=232.25 Aligned_cols=285 Identities=15% Similarity=0.246 Sum_probs=233.7
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeeEeccCCCCeEEEEE-CCCCCEEEEEeCCCeEEE
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRF-SPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~~l~~h~~~V~~l~f-spdg~~Lasgs~Dg~V~I 706 (918)
...+++.|.+.|++++...+++.|++++.|-+|++|+.... -++.++..|.+.|.||++ .++...+|+|+.|+.|.|
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 46788999999999999999999999999999999998866 688899999999999999 788889999999999999
Q ss_pred EeCCCCCc---------eeEEec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEec
Q 002471 707 WDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP 773 (918)
Q Consensus 707 wdl~~~~~---------~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp 773 (918)
||++++.. ....+. ++...|++++.++.+ .+|++|+..+.|++||.++.+.+..+.++ +..+..+.
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND 223 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence 99996422 122233 888999999999986 57789999999999999999988888775 46677899
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
+|..++++++||+|++||+...+|+.++..|...|.++..+|+-..+++|+.| .|..-|+++......+.+ ...+|
T Consensus 224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv 300 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPV 300 (735)
T ss_pred CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec---CCCch
Confidence 99999999999999999999999999999999999999999999999999999 999999988633222222 25567
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-------------------------EcccCCCeEEEEEeCCCCEEEE
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-------------------------LTAHEGLIAALAVSTETGYVAS 907 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~-------------------------~~~h~~~V~~la~spdg~~Las 907 (918)
..+..+....-+.+++.|+.|+-|...-.-.+. .......|...++-.|.++++|
T Consensus 301 ~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlT 380 (735)
T KOG0308|consen 301 LKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLT 380 (735)
T ss_pred hhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEee
Confidence 777777655556888889999988654321110 0011123344455567889999
Q ss_pred EecCCcEEEeC
Q 002471 908 ASHDKFVKLWK 918 (918)
Q Consensus 908 gs~Dg~I~IWd 918 (918)
-..+|.+.+||
T Consensus 381 kDa~gnv~lwD 391 (735)
T KOG0308|consen 381 KDAKGNVALWD 391 (735)
T ss_pred ecCCCCEEEEE
Confidence 99999999997
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=223.52 Aligned_cols=289 Identities=20% Similarity=0.253 Sum_probs=231.3
Q ss_pred cCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCC
Q 002471 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFD 701 (918)
Q Consensus 624 ~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~D 701 (918)
..|.-.+...+++|++.|+||...+.|.+||+|+.||+|+||.+.+++|++++.. .+.|.||+|+|.+. .||++- +
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~ 463 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-G 463 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-c
Confidence 3466778888999999999999999999999999999999999999999999874 45899999999765 344433 2
Q ss_pred CeEEEEeC---------------------------------CC---CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC-
Q 002471 702 KTVRVWDA---------------------------------DN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG- 744 (918)
Q Consensus 702 g~V~Iwdl---------------------------------~~---~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~- 744 (918)
..+.|-+. .. ...-++....|...|..|.|+..|++|..++..
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 22333322 10 011134445688999999999999877655543
Q ss_pred -CCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEE
Q 002471 745 -DGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 820 (918)
Q Consensus 745 -Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~L 820 (918)
...|.|+++...+....| ++.+.++.|+|...++++++ ...|+|||+...+.+..+......|.+++.+|.|.-|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 356889999876655444 56788899999988777655 5789999999988888887778899999999999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC------CCCc-EE---EEccc
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM------SENK-TM---TLTAH 889 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~------~~~~-~~---~~~~h 889 (918)
+.++.| .++.||+.-.. +....+..|...++.++||+....|++|+.|+++.||.- ..+. ++ .+.+|
T Consensus 623 i~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred EEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 999999 99999997543 566778889999999999999999999999999988842 2222 22 56788
Q ss_pred CCC----eEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 890 EGL----IAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 890 ~~~----V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
... |..+.|+|...+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 765 9999999999999999999999999
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=205.35 Aligned_cols=241 Identities=24% Similarity=0.424 Sum_probs=200.1
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC--ceeEEeccCCCCeeEEEE-cCCCCeEEEEEeCCCcEEEEEc
Q 002471 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWSI 753 (918)
Q Consensus 677 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~f-sp~~~~ll~sgs~Dg~I~iwdl 753 (918)
..|.+.|.++...--|++|||++.|++|+||.+++.+ ..+.++.+|.++|+.++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688889988888889999999999999999999866 578899999999999999 5665679999999999999999
Q ss_pred CCCeeeEE-----eecCceEEEEecCC--CEEEEEEcCCeEEEEECCCc---eEEEEecCCCCCeEEEEEcCC---C---
Q 002471 754 NNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G--- 817 (918)
Q Consensus 754 ~~~~~~~~-----~~~~~~~v~~sp~~--~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~si~~spd---g--- 817 (918)
.+++-.+. +...+++++|-|.+ -.|++++.||.|.|++.+.. ........|+-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88854332 34567888888765 46777888999999987754 334445679999999999995 4
Q ss_pred --------CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 002471 818 --------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN--- 881 (918)
Q Consensus 818 --------~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g----~~l~s~s~dg~I~vwd~~~~--- 881 (918)
+.|++|+.| .|+||+..++ .......+..|...|+.++|.|.- .+|++++.||+|.||..+..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999 9999999876 445556689999999999999964 57999999999999977632
Q ss_pred -cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 882 -KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 -~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+...+......++.+.|+..|.+|+.++.|..|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1123455678899999999999999999999999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=213.49 Aligned_cols=249 Identities=19% Similarity=0.250 Sum_probs=215.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
+-..+..++||...|+++.|+++...+++++.|..|+||.+....+...+..|..+|+.+..+|.|+||++++.||+..+
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 44567789999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred EeCCCCCceeEEecc--CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEE
Q 002471 707 WDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 707 wdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 781 (918)
.|+++ +..+..... ..-.++++.|+||| .+|.+|..||.|+|||+.+...+..|.+ .+..+.|+.+|-+++++
T Consensus 330 sd~~~-g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 330 SDISS-GSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEccC-CcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE
Confidence 99998 444443332 33458999999996 4777999999999999999998888875 46778999998899999
Q ss_pred EcCCeEEEEECCCceEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002471 782 AAENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~h-~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 859 (918)
+.|+.|++||+|..+...++... ...|.+++|+..|.+|++++.+ .|++++-.+ +.+.++..+..|.+..+++.|..
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecc
Confidence 99999999999998877776542 3479999999999999999888 788887554 35678888888888999999999
Q ss_pred CCCEEEEEEcCCeEEEEEC
Q 002471 860 TYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~ 878 (918)
...++++++.|..++|+.+
T Consensus 487 ~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceEEeeccchhheEEeec
Confidence 9999999999999888864
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=213.78 Aligned_cols=230 Identities=23% Similarity=0.376 Sum_probs=195.1
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
++|...|.|++.|+||+|||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++. ..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LS 277 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hH
Confidence 48999999999999999999999999999999999999999999999999999999888999999999999999987 66
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
.+.++.+|.+.|.+|..... ..++.+|+.|+++++|++..... -.|. +.+.|++|.. ...|++|+.+|.|.+|+
T Consensus 278 ~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec-ccceeeccCCceEEEee
Confidence 78889999999999998765 45676788999999999954432 2333 2445666654 47899999999999999
Q ss_pred CCCceEEEEecC-C-----------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEeccCCCceEEEEE
Q 002471 792 AETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 792 ~~t~~~~~~l~~-h-----------~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-~~~~~i~~~~~~~~~i~~i~~ 857 (918)
+-+.+++++... | ..+|++++..|..+++++|+.+ .|++|-+..+ .....+..+. -.+.|++++|
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f 433 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAF 433 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEE
Confidence 999998887542 2 2389999999999999999988 9999999876 2345555555 4678999999
Q ss_pred eCCCCEEEEEEc
Q 002471 858 HPTYPSLLVIGC 869 (918)
Q Consensus 858 sp~g~~l~s~s~ 869 (918)
+++|++|++|..
T Consensus 434 ~~sgk~ivagiG 445 (479)
T KOG0299|consen 434 SNSGKRIVAGIG 445 (479)
T ss_pred ccCCCEEEEecc
Confidence 999998777754
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-22 Score=199.08 Aligned_cols=281 Identities=22% Similarity=0.349 Sum_probs=219.9
Q ss_pred eeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCc----------eeeE-----eccCCCCeEEEEECC-CCCEE
Q 002471 633 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK----------SKTN-----LEEHSSLITDVRFSP-SMPRL 695 (918)
Q Consensus 633 ~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~~----------~~~~-----l~~h~~~V~~l~fsp-dg~~L 695 (918)
..+.|.+.|+++...+ .|+|+++|+.||.|.|||++... .+.. -.+|.-.|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457899999999998 78999999999999999987432 1111 136888999999999 56688
Q ss_pred EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEE
Q 002471 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 770 (918)
Q Consensus 696 asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~ 770 (918)
.+++.|.+++|||..+ -.....|+ .++.|++-+++|- ...||++|..|-.|++.|+.+|.+.+++.+ ++..+.
T Consensus 118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8899999999999998 44455555 6678888888885 346888999999999999999999998876 567899
Q ss_pred EecCCCEEEE-EEcCCeEEEEECCCc-eEEEEe--------------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 771 FQPHLGRYLA-AAAENVVSILDAETQ-ACRLSL--------------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 771 ~sp~~~~ll~-~~~dg~I~i~D~~t~-~~~~~l--------------~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
|+|...++++ ++.||.|++||++.. .|...+ ..|.+.|..++|..++.++++++.| .+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9999988665 566999999999865 333333 2466789999999999999999888 9999999
Q ss_pred CCCCCcceEEEeccCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002471 834 GSGSEGECVHELSCNGN----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 834 ~s~~~~~~i~~~~~~~~----~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasg 908 (918)
.+|+.......-..+.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+-..+.+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 98854322211111111 111 22 334455555666789999999999888 677899999999999998899999
Q ss_pred ecCCcEEEe
Q 002471 909 SHDKFVKLW 917 (918)
Q Consensus 909 s~Dg~I~IW 917 (918)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-24 Score=237.83 Aligned_cols=236 Identities=27% Similarity=0.476 Sum_probs=211.8
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
..+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|..+|.||.|+++..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45667999999999988889999999999999999998888888999999999999999999999999999999999997
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
.+.++++.+|...+.++.|+|.+.+ +++|+.|+.+++||++...|.+.
T Consensus 102 -Ak~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~------------------------------ 149 (825)
T KOG0267|consen 102 -AKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHT------------------------------ 149 (825)
T ss_pred -hhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCceee------------------------------
Confidence 7889999999999999999999764 47899999999999876554443
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002471 792 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 792 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d 870 (918)
+.+|...|.++.|+|+|++++++++| +++|||+..+ +.+.+|+.|.+.+..+.|+|..-.++.|+.|
T Consensus 150 ---------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 150 ---------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred ---------ecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCC
Confidence 44577889999999999999999998 9999999776 7888999999999999999999999999999
Q ss_pred CeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 871 QSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 871 g~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
++|+|||+++.+.+ ........|.+++|++++..+++|..+
T Consensus 218 ~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 99999999998888 555667899999999999988887654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-23 Score=212.94 Aligned_cols=246 Identities=17% Similarity=0.259 Sum_probs=207.6
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
-++..++++|.+.|..|++.. ..+++++.|++|+.|.++. ..++++.+ ...+..|.-+..+..++||+.+ |.||
T Consensus 99 R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IW 172 (433)
T KOG0268|consen 99 RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIW 172 (433)
T ss_pred hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeec
Confidence 357788999999999999987 6888999999999999875 35566553 4457778877778889998865 9999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCC
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg 785 (918)
|... ..++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++.+..++.. .-....++|+|..-.|+++..|.
T Consensus 173 D~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 173 DEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred cccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccc
Confidence 9986 67888888888899999999999999999999999999999999887754 45678899999777888888999
Q ss_pred eEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 786 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 786 ~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
.++.||++.. .++....+|.+.|.++.|+|.|.-|++|+.| +|+||.++.+......++- .-..|.|+.|+.|..+
T Consensus 252 nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 252 NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKY 329 (433)
T ss_pred cceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccE
Confidence 9999999975 6777888999999999999999999999999 9999999876433222221 1345899999999999
Q ss_pred EEEEEcCCeEEEEECCCCc
Q 002471 864 LLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~ 882 (918)
+++|+.|+.|++|...-.+
T Consensus 330 i~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEecCCCcceeeeecchhh
Confidence 9999999999999876543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=215.76 Aligned_cols=235 Identities=17% Similarity=0.269 Sum_probs=190.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE------------eccCCCCeEEEEECCCC-CEEEEEeCCCeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN------------LEEHSSLITDVRFSPSM-PRLATSSFDKTV 704 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~------------l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V 704 (918)
...|+++.|++.|..|++.+....++|+|-+....... .++|...++|.+|+|+. ..++|++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 44799999999999999888888999999765444433 34799999999999965 478999999999
Q ss_pred EEEeCCCCCceeEEec-----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe------ec--CceEEEE
Q 002471 705 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KG--GTAQMRF 771 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~--~~~~v~~ 771 (918)
||||+++......+++ +..-.++.++|++++.. |++|+.||.|.+|+.........+ .. .++++.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999998665555554 34457899999999875 779999999999998654322211 12 6789999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCC--CCCeEEEEEcCCCCEEEEEeC-------CeEEEEECCCCCCcce
Q 002471 772 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGH--TKPIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGEC 841 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h--~~~V~si~~spdg~~Las~s~-------d~I~iwdl~s~~~~~~ 841 (918)
+.++++|++-+.|+++++||++.. +++.+..+- ..+-+.++|+|+.++|++|.. +++.+||..+. ..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~ 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence 999999999999999999999976 555555543 345678999999999999863 16999998766 66
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
+..+......|..|.|||.-+-|++++.||.++||
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 77777778889999999999999999999999887
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=204.95 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=194.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEE
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRV 706 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~L-atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~I 706 (918)
+.+..+..|. .+.+++|+++++++ ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.|+++ +.|+.|++
T Consensus 22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3445555554 47789999999876 5667889999999999888777765544 5788999999987665 55899999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEE-
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA- 782 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~- 782 (918)
||+.+ ...+..+. +...+.+++|+|++..++ +++.+ ..+.+||.++++....+. .....+.|++++..+++++
T Consensus 100 ~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCC-CeEEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 99987 45555554 234578899999987665 55544 467788999887765442 3456688999998887665
Q ss_pred cCCeEEEEECCCceEEEEecCCC-----C--CeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 783 AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~-----~--~V~si~~spdg~~Las~-s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
.++.|++||+++++.+..+..+. . ....++|+|++++++++ +.+ .|.+||++++ +.+..+. +...+.
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~ 252 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVW 252 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcc
Confidence 58999999999998776654221 1 23468899999975543 334 8999999876 3333332 345788
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002471 854 SCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST 900 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s-~dg~I~vwd~~~~~~~~~~~h~~~V~~la~sp 900 (918)
+++|+|++.+|+++. .++.|++||+.+++++.........+.++|+|
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 999999999998874 58999999999999874334456668888764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=227.48 Aligned_cols=273 Identities=20% Similarity=0.371 Sum_probs=214.2
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCC----CceeeEecc---CCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~----~~~~~~l~~---h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.+.+|...++-.-|+.++.. .++||.+.. .++...++. -...+.+|+|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 45667777888888888754 678887652 222222221 122456778875 567899999999999999986
Q ss_pred --CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCC-EEEEEEcCC
Q 002471 712 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYLAAAAEN 785 (918)
Q Consensus 712 --~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~-~ll~~~~dg 785 (918)
..+.+..|..|+..|.+++|++...++|++|+.||+|++||++..+...++.+ .+..|.|+|... +|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 34556688999999999999999999999999999999999999888877765 456788998765 455566678
Q ss_pred eEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 786 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 786 ~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+..+. ...++.++.|-|+..+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999976 6777888999999999999999999999999 999999986533 2333332 2678999999999877
Q ss_pred EEEEE---cCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEecCCcEE
Q 002471 864 LLVIG---CYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK 915 (918)
Q Consensus 864 l~s~s---~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~sp-dg~~Lasgs~Dg~I~ 915 (918)
.++.+ .|-.|+|||++..-+- ++..|...|+.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 55544 3559999999876544 7889999999999965 455788999999864
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=220.40 Aligned_cols=273 Identities=23% Similarity=0.318 Sum_probs=208.4
Q ss_pred EEEcc---CCCEEEEEeCCCcEEEEECCCCce------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 644 CHFSS---DGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 644 l~fsp---dg~~Latgs~Dg~V~iwd~~~~~~------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
+.|++ ...+||.+.+||.|.++|...... ++.+..|...|.++.|.|....|++++.|.++++||+.. ..
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-ce
Confidence 56665 346899999999999999874332 245567999999999999777899999999999999997 55
Q ss_pred eeEE--eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee--------------------EEe-------e--
Q 002471 715 SLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT--------------------RVF-------K-- 763 (918)
Q Consensus 715 ~~~~--~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~--------------------~~~-------~-- 763 (918)
++.. +.+|.+.|.++||.+.+..+||+|+.||.|.|||++..... ... +
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 5554 88999999999999999999999999999999999754300 000 0
Q ss_pred -cCce---EEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEe--------cCC---CCCeEEEEEcCCCCEEEEEeCC-
Q 002471 764 -GGTA---QMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED- 826 (918)
Q Consensus 764 -~~~~---~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l--------~~h---~~~V~si~~spdg~~Las~s~d- 826 (918)
..+. .+.+.-|...|++++. |+.|+|||+++....... ..| ...+.+++.+..|.+|++.+.|
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 0111 2556677788888777 999999999986554432 122 2357788888888876666666
Q ss_pred eEEEEECCCCCCcceEEEeccCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCC
Q 002471 827 SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTET 902 (918)
Q Consensus 827 ~I~iwdl~s~~~~~~i~~~~~~~~~--i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg 902 (918)
.|++|++.+... ..+..+.++... ...-..+|++.+|++|+.|...++|.+.+.+.- .+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 999999987532 333333333222 223357899999999999999999999887654 788999999999998743
Q ss_pred -CEEEEEecCCcEEEeC
Q 002471 903 -GYVASASHDKFVKLWK 918 (918)
Q Consensus 903 -~~Lasgs~Dg~I~IWd 918 (918)
.-++++++|-.++||+
T Consensus 373 ~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWR 389 (720)
T ss_pred CCCceeeccCcceEEEe
Confidence 3477889999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=205.81 Aligned_cols=338 Identities=18% Similarity=0.286 Sum_probs=247.4
Q ss_pred cCCCeeEeCCCcchhhhcccccccCCCcCceeee--eccCCCCCCCCCCcccccccCccceeeeeeecCCCCeEEEEEcc
Q 002471 571 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF--LSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648 (918)
Q Consensus 571 ~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~--~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fsp 648 (918)
-+.+.+|+.+.+.+.+..+.+..-.. +.|-+. ...++-...|..+...-+.++ ..+..+....|.+.|.|++.-.
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ek--k~Vl~v~F~engdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREK--KFVLCVTFLENGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccc--eEEEEEEEcCCCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEEEEec
Confidence 45668899998877666554433322 444443 444444455555554444444 4555555569999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECC--CCce---------ee-----------------------------EeccCCCCeEEEEE
Q 002471 649 DGKLLATGGHDKKAVLWHTD--TLKS---------KT-----------------------------NLEEHSSLITDVRF 688 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~--~~~~---------~~-----------------------------~l~~h~~~V~~l~f 688 (918)
+|++|- |+.|.+|..||-. +.+. ++ +..+|.+..+.++.
T Consensus 298 ~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 298 DGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred CccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 997666 9999999999832 1000 00 11258888999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCc
Q 002471 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGT 766 (918)
Q Consensus 689 spdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~ 766 (918)
+|+...++|++.|+.|++|+ + .+++.+ +-...++.|+.|+|.| .++.|...|...+.|+++...+.... ...
T Consensus 377 hps~~q~~T~gqdk~v~lW~-~--~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~l 450 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN-D--HKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQL 450 (626)
T ss_pred CCChhheeeccCcceEEEcc-C--CceeEE-EEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCce
Confidence 99999999999999999999 2 233322 2356789999999997 67799999999999999976665443 467
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEE
Q 002471 767 AQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 843 (918)
Q Consensus 767 ~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~--~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~ 843 (918)
.+++|+|++..+++++.|+.|+||-+....... .-+.+..+|+.+.|++|+++|.+-+.| .|..|..........++
T Consensus 451 s~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 451 SVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred EEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence 889999999999999999999999876543222 223355899999999999999999999 99999543322211111
Q ss_pred E-----------e----ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----EEEcccCCCeEEEEEeCCCCE
Q 002471 844 E-----------L----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----MTLTAHEGLIAALAVSTETGY 904 (918)
Q Consensus 844 ~-----------~----~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~----~~~~~h~~~V~~la~spdg~~ 904 (918)
. | ..+...|..++-+.+.+.++++...|+|++|...-... ..+.+|.+.|++++|.-+..+
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~ 610 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSH 610 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCce
Confidence 1 1 12333455566667778888888899999998765433 277899999999999988888
Q ss_pred EEEEecCCcEEEeC
Q 002471 905 VASASHDKFVKLWK 918 (918)
Q Consensus 905 Lasgs~Dg~I~IWd 918 (918)
|++.+.|.+|..|+
T Consensus 611 li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 611 LISTGKDTSIMQWR 624 (626)
T ss_pred EEecCCCceEEEEE
Confidence 88888999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-21 Score=204.51 Aligned_cols=295 Identities=20% Similarity=0.282 Sum_probs=232.6
Q ss_pred cccccccCccceeeeeeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEE
Q 002471 618 RGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA 696 (918)
Q Consensus 618 ~~~d~~~~~s~~~~~~l~~H~-~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~La 696 (918)
.-|++..+.-++....++.+. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+|-
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee
Confidence 346666665666666666554 5799999999985 78999999999999998888888889999999999999996555
Q ss_pred EEeCCCeEEEEeCCCCC----------ce-----------------------------eEEeccCCCCeeEEEEcCCCCe
Q 002471 697 TSSFDKTVRVWDADNPG----------YS-----------------------------LRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 697 sgs~Dg~V~Iwdl~~~~----------~~-----------------------------~~~~~~h~~~V~sl~fsp~~~~ 737 (918)
|+.|..|..||-.-.. .. .....+|.+..+.++.+|+.+
T Consensus 304 -GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~- 381 (626)
T KOG2106|consen 304 -GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN- 381 (626)
T ss_pred -cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-
Confidence 9999999999842100 00 112236888999999999866
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC
Q 002471 738 LICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg 817 (918)
++++|+.|+.+++|+-..-...+.+..+..++.|+|.+ .++++...|...++|.++...+..... ..++.+++|+|+|
T Consensus 382 q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG 459 (626)
T ss_pred heeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCC
Confidence 45599999999999943334455667788999999998 999999999999999999766665555 8899999999999
Q ss_pred CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------------
Q 002471 818 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------------ 884 (918)
Q Consensus 818 ~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~------------ 884 (918)
.+||.|+.| .|+||.+..... +....-+++..+|+.+.|++|+.+|.+-+.|-.|.+|.....+.+
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~ 538 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYT 538 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeE
Confidence 999999999 999999875432 233333455689999999999999999999999999954433211
Q ss_pred -------EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 885 -------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 -------~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
....+...|..++-+.+.+++|+|.+.|+|+||+
T Consensus 539 c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 539 CTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFS 579 (626)
T ss_pred EEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEc
Confidence 0112455677777778888999999999999985
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=203.22 Aligned_cols=256 Identities=20% Similarity=0.331 Sum_probs=215.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEE
Q 002471 652 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 731 (918)
Q Consensus 652 ~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~f 731 (918)
.|++.-.+++++ ...++.+.+|.+.|+.++.......+.+++.|.+.+||.+++ +.|+..+.||.+.|++|.|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEe
Confidence 455555666643 356778889999999999988878999999999999999998 8899999999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEEc------CCC--------e--------------------------eeEEeecC---ceE
Q 002471 732 HPNKDDLICSCDGDGEIRYWSI------NNG--------S--------------------------CTRVFKGG---TAQ 768 (918)
Q Consensus 732 sp~~~~ll~sgs~Dg~I~iwdl------~~~--------~--------------------------~~~~~~~~---~~~ 768 (918)
++.+. |+++++.|++-.||.. ... + .+..+.++ +.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99754 6779999999999972 110 0 11112222 234
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 847 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~ 847 (918)
..|...+..+++++.|.+-.+||+++++++..+.+|....+.++-+|.-+++++.+.| +.++||++ +....+..|.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence 4577778899999999999999999999999999999999999999999999999999 99999998 45678889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|...|+++.|.-+.+ +++|+.|.+|+|||+++-+.. .....+.+++.++++..+.+|+.--++..|+|||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999987765 899999999999999886543 4556778899999999888998888888899997
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=215.96 Aligned_cols=259 Identities=17% Similarity=0.285 Sum_probs=215.1
Q ss_pred CCCCCcccccccCccceeeeeeec--CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeeEeccCCCCeEEEEE
Q 002471 613 RDAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRF 688 (918)
Q Consensus 613 ~~~~~~~~d~~~~~s~~~~~~l~~--H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~~l~~h~~~V~~l~f 688 (918)
....+++||+...-.-.++..|.. ....|++|.+.+||+.|++|++-.+|.|||+... +....+....-.+.+++.
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~ 517 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 517 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence 344567788776544455555543 4578999999999999999999999999999743 444445544566788999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE--EeecCc
Q 002471 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGT 766 (918)
Q Consensus 689 spdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~~~~ 766 (918)
+||.+.+++++.||.|+|||+.+ ...++.|.+|.+.+.||.++++|.+|. +|+-|++||.||+++++.+. .|...+
T Consensus 518 spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 518 SPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred CCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 99999999999999999999998 788999999999999999999988776 99999999999999987654 456678
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002471 767 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 845 (918)
Q Consensus 767 ~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~ 845 (918)
.++.++|.+.++++|-..+.|.|...... ..+.+.-|+..|.++.|.+.|+++++.+.| .+..|..--+ ..+...
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqs 671 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQS 671 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeec
Confidence 88899999999999999999999887654 344556699999999999999999999999 8999988766 334433
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
+. ...|.+|.++.|.++|++|+.|+.-.||.+
T Consensus 672 kE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 KE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 32 677999999999999999999998888865
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=206.56 Aligned_cols=353 Identities=13% Similarity=0.174 Sum_probs=245.1
Q ss_pred ccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCC-CCCCCcccccccCccceeee
Q 002471 557 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDP-RDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 557 ~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~-~~~~~~~~d~~~~~s~~~~~ 632 (918)
-.+.|+.+..-++. ++.++||++...=+ ....-.|..|..++..+..++..+ ..........++-++++.+.
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence 45667766655444 67789999987433 222334567788887755533222 12222233333444678888
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
.+....+.|++++.+|.++.++.|++||.+++++...++... .|...++.|.+|+|++++..|++|+.||.|++||+.
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 899999999999999999999999999988888877665543 344567899999999999999999999999999998
Q ss_pred CCCceeE------Eec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEEE
Q 002471 711 NPGYSLR------TFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 711 ~~~~~~~------~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~ 780 (918)
.+..... .+. +...-|+++.|..++ .|++|+.-|+|.+||...+..+..+ ..++.+++..++++++++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFS 262 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEE
Confidence 7443321 111 134458889888654 5779999999999999999877665 467889999999999999
Q ss_pred EEcCCeEEEEECCCceE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--------------------
Q 002471 781 AAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-------------------- 835 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~----~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s-------------------- 835 (918)
++.|+.|..|...+.+. ......|...|.+++..++ .|++|+.| .+.+-..+.
T Consensus 263 aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~ 340 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSV 340 (691)
T ss_pred ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeec
Confidence 99999998887776533 2223457888888888765 66666666 444433221
Q ss_pred ----------------------C------CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC--------
Q 002471 836 ----------------------G------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-------- 879 (918)
Q Consensus 836 ----------------------~------~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~-------- 879 (918)
. .....++........|.+.+.+|+|.+|+.+... .++||.+.
T Consensus 341 a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~ 419 (691)
T KOG2048|consen 341 APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVI 419 (691)
T ss_pred CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEE
Confidence 1 0011112222234568889999999988887721 12222111
Q ss_pred ----------------------------------------CCcEE-----EEcccCCCeEEEEEeCCCCEEEEEecCCcE
Q 002471 880 ----------------------------------------ENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFV 914 (918)
Q Consensus 880 ----------------------------------------~~~~~-----~~~~h~~~V~~la~spdg~~Lasgs~Dg~I 914 (918)
+.... .-.+....|+.++.+++|.|||+.+.+|.|
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI 499 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence 11000 001234578899999999999999999999
Q ss_pred EEeC
Q 002471 915 KLWK 918 (918)
Q Consensus 915 ~IWd 918 (918)
.+|+
T Consensus 500 ~v~n 503 (691)
T KOG2048|consen 500 FVYN 503 (691)
T ss_pred EEEE
Confidence 9996
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=213.69 Aligned_cols=283 Identities=20% Similarity=0.293 Sum_probs=221.9
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceee-----EeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKT-----NLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~-----~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
..+.||.+-|+++.|+|++..|++++.|+++.||.-++. -=+. .+.+........-|++++..|++-+..|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 345699999999999999999999999999999987643 2122 222345568999999999999999999999
Q ss_pred EEEeCCCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEe------ecCceEEEEecCC
Q 002471 705 RVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF------KGGTAQMRFQPHL 775 (918)
Q Consensus 705 ~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~------~~~~~~v~~sp~~ 775 (918)
++|...... .....+.||.+.|.+|+|.|.|++|+ +.+.|-+-|+|-.-..+ .-+.+ .-...|+++.+..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 999843322 22345679999999999999988666 88999999998755111 11111 1234667777766
Q ss_pred CEEEEEEcCCeEEEEECCC-------------------------------------------ceE---------------
Q 002471 776 GRYLAAAAENVVSILDAET-------------------------------------------QAC--------------- 797 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t-------------------------------------------~~~--------------- 797 (918)
-.|+.++.+..+++|+... +..
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 6777777778888876421 100
Q ss_pred ------------------EEEecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 798 ------------------RLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 798 ------------------~~~l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
+..+.+|...|.+++.+|+++++|+++.. .|++|+..+- ..+..+..|.-.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVT 576 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEE
Confidence 01244778889999999999999998854 5999998765 55668889999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-----~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.++|+||+++|++.+.|+++.+|........ ....|...|+++.|+|++.+++|+|.|++|+||.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999988655433 3678999999999999999999999999999995
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=218.59 Aligned_cols=274 Identities=14% Similarity=0.238 Sum_probs=215.7
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
.+|+...+.|+|.++|.+|++++.||.|++|+.... +.-.++..+...|.+++.. +.+|++|+.+++|.+|.+.+ +
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps-~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS-G 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC-C
Confidence 379999999999999999999999999999997655 4455555588888888865 44999999999999999987 4
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 790 (918)
..-..+...+-++.+++|+.+|. +++.|+.|-.|++.++......+.+ ++.+.++.|+|.+..+++.+.||.|+||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 44444555678899999999876 5568999999999999887655555 5678899999999999999999999999
Q ss_pred ECCCceEEEEecCC--------CCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 791 DAETQACRLSLQGH--------TKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 791 D~~t~~~~~~l~~h--------~~~V~si~~spdg~-~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
|+.++.+.+++.+- ...+..++|+|+|. +++.+.++.|++|+..+......+. .+.+...+.++.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99999887766542 34567789999965 5555555599999998774322222 23334459999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 862 PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 862 ~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
.||++++.+|.|.|||+.+-.. ......|.|++|.|++..|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998222 344568999999998876655444444443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=207.20 Aligned_cols=216 Identities=20% Similarity=0.389 Sum_probs=182.5
Q ss_pred cceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECC-CCCEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSP-SMPRLAT 697 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~~-------~~~~~l~~h~~~V~~l~fsp-dg~~Las 697 (918)
.+.+..+|++|.+.-+.++|++. .-+|++|+.|++|++||+... .....+.+|...|.+++|++ +..+|++
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence 45566789999998899999984 458999999999999998732 34567889999999999999 5668899
Q ss_pred EeCCCeEEEEeCCC-CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCC
Q 002471 698 SSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 776 (918)
Q Consensus 698 gs~Dg~V~Iwdl~~-~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~ 776 (918)
+++|+.+.|||+++ ..++.....+|.+.|+|++|+|.+..+||+|+.|++|++||+|+-+
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~------------------- 306 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN------------------- 306 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------------
Confidence 99999999999995 3566778889999999999999999999999999999999998643
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCC-----------CcceEE
Q 002471 777 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGS-----------EGECVH 843 (918)
Q Consensus 777 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~-----------~~~~i~ 843 (918)
++++++.+|+..|.+|.|+|... +|++++.| .+.|||+..-. ..+.+.
T Consensus 307 -------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF 367 (422)
T KOG0264|consen 307 -------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF 367 (422)
T ss_pred -------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence 24567788999999999999766 88888888 99999996532 235567
Q ss_pred EeccCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCC
Q 002471 844 ELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSE 880 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~~l~-s~s~dg~I~vwd~~~ 880 (918)
...+|...|..+.|+|...+++ +++.|+.+.||....
T Consensus 368 ~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 368 IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 7888999999999999998754 567788999999764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=208.69 Aligned_cols=227 Identities=21% Similarity=0.269 Sum_probs=194.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-----
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN----- 711 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~----- 711 (918)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+||.|+-||.+|+|||.||.|.+|++.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999997742
Q ss_pred ---CCceeEEeccCCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCC
Q 002471 712 ---PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 712 ---~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg 785 (918)
.-.++..|..|.-+|+++...+.+ +..++|++.|.+|++||+..+..+.++ ...+.++..+|-+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 235678899999999999887652 335669999999999999999988765 45678899999999999999999
Q ss_pred eEEEEECCCc----------------eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec
Q 002471 786 VVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 846 (918)
Q Consensus 786 ~I~i~D~~t~----------------~~~~~l~~h~~--~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~ 846 (918)
.|.+.++... ..+..+.+|.. .|+|++++-||.+|++|+.| .|+|||+.+. .|++.+.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHh
Confidence 9999876532 34556778888 99999999999999999999 9999999776 6676666
Q ss_pred cCCCceEEEEEeCCCCEEEE
Q 002471 847 CNGNKFHSCVFHPTYPSLLV 866 (918)
Q Consensus 847 ~~~~~i~~i~~sp~g~~l~s 866 (918)
...++|+.+.+.|-.+.++.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhccccceeEeeccccceec
Confidence 56788888888665444444
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=192.82 Aligned_cols=224 Identities=18% Similarity=0.304 Sum_probs=183.6
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
.|..+|.+|+|.+ ...+++|+.||.|+++|+.++. ...+..|...|.||.+++....+++|+.|++|++||.+. ...
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~ 128 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVV 128 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccc
Confidence 3788999999987 4578999999999999998876 455667999999999999888999999999999999986 444
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-----EeecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-----~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 790 (918)
+..+. ....|.++... ++ .|+.|+.|..|.+||+++..... .++-.+.++++.|.+.-+++++-||+|.+=
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccccc-cCceEEEEecc--CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 44444 33489999887 33 44578889999999999875432 345567899999998999999999999887
Q ss_pred ECCCc----eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 791 DAETQ----ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 791 D~~t~----~~~~~l~~h~~---------~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
.++.. +..+.|+.|.. +|++|+|+|-...|++|+.| .|.+||+.+. +.+..+......|.+++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 76655 55666777753 68999999998899999999 9999999776 45555555577899999
Q ss_pred EeCCCCEEEEEEc
Q 002471 857 FHPTYPSLLVIGC 869 (918)
Q Consensus 857 ~sp~g~~l~s~s~ 869 (918)
|+.+|..|+++++
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999875
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-20 Score=205.17 Aligned_cols=275 Identities=15% Similarity=0.227 Sum_probs=225.9
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~-~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
+.--...|+|+||+.+.+.||.+-.||.|.||++.. .-+...+.++ ...|..|+|+ ++.+|++.+.+|.|.-||+.+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 334467899999999999999999999999999985 4455566655 4679999999 566889999999999999998
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----ecCceEEEEecCCCEEEEEEcCCe
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
.+....+....+.|++++.+|.+. .++.|++||.++++++..++..... ++.+.++.|.+++.+++.|+.||.
T Consensus 100 -lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 100 -LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred -CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 777888888899999999999876 4557888999999998888765432 356788999999999999999999
Q ss_pred EEEEECCCceEEEEec-------C-CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002471 787 VSILDAETQACRLSLQ-------G-HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~-------~-h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
|++||+.++..++... . ...-|+++.|-.++.++..-+.++|.+||...+ ..+..+..|...|.+++..
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLALAVA 254 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---chhhhhhhhhcceeEEEEc
Confidence 9999999987666221 1 233478888886654443334449999999877 6778888899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcE--E---EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 859 PTYPSLLVIGCYQSLELWNMSENKT--M---TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~vwd~~~~~~--~---~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
+++.++++++.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|..+.+
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999888877643 1 45578999999999888 8999999998865
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-21 Score=201.92 Aligned_cols=291 Identities=17% Similarity=0.274 Sum_probs=214.6
Q ss_pred ccceeeeeeecCCCCeEEEEEccCC--CEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECC-CCCEEEEE
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP-SMPRLATS 698 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~----~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasg 698 (918)
..+.....++-+.++|+|++|+|.. +++|+|..-|.|-+||+. ....+..+..|+..|.+|.|+| +...|++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3556777888999999999999955 588999999999999994 3344667889999999999999 45689999
Q ss_pred eCCCeEEEEeCCCCC-ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeecCceEEEEec
Q 002471 699 SFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQP 773 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~-~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~sp 773 (918)
|+||+||+-|+++.- ..+..+......+.++.|+.+...++ .++.=|...+||++++.. ++..+..+..++++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 999999999998622 12223333445667788887766555 666667999999998754 233345788899999
Q ss_pred CCCE-EEEEEcCCeEEEEECCCce----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC----CCCcceEE
Q 002471 774 HLGR-YLAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS----GSEGECVH 843 (918)
Q Consensus 774 ~~~~-ll~~~~dg~I~i~D~~t~~----~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s----~~~~~~i~ 843 (918)
-..+ +++++.|++++|||++.-. ++.....|...|.++.|+|++-.|++.+.| .|+|||..- ......|.
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 8866 4556679999999998642 234445699999999999988778888888 999999841 11111111
Q ss_pred EeccCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC-CCeEE-EEEeCCCC-EEEEEecCCcEEEe
Q 002471 844 ELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE-GLIAA-LAVSTETG-YVASASHDKFVKLW 917 (918)
Q Consensus 844 ~~~~~~~~--i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~-~~V~~-la~spdg~-~Lasgs~Dg~I~IW 917 (918)
.-..+... .....|.|+..+|++|-.-..|.|||-..++.+ .+.... ..|.+ ..|+|-+. +++.++..|.|+||
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 11111122 345689999999999999999999999999865 433333 24554 47899887 45455567889988
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=205.74 Aligned_cols=285 Identities=18% Similarity=0.256 Sum_probs=208.4
Q ss_pred cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccC----CCCCCCCCCcccccccCc-cceeeeeeecCCCCeEEEE
Q 002471 571 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----DTDPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCH 645 (918)
Q Consensus 571 ~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~----~~~~~~~~~~~~d~~~~~-s~~~~~~l~~H~~~V~~l~ 645 (918)
+..++|||..+.+...+.-..... ..+.-..|-..+ .....+...+.|+..... +...+..+.+. .-.|++
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~--pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~ 86 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAE--PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVA 86 (673)
T ss_pred CCceEEeecccccCccccccCCCC--CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHh
Confidence 345688998887765554332222 222222332211 112223333333333221 12222222222 445555
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccC-CC
Q 002471 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SA 724 (918)
Q Consensus 646 fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h-~~ 724 (918)
......|+++|+..++|+|||+....+.+.+++|...|+++.|+....+||+++..|.|.|..+.+ +.....|... ..
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgq 165 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQ 165 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCC
Confidence 555568999999999999999998888888999999999999999999999999999999999998 4444555543 44
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCC
Q 002471 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 804 (918)
Q Consensus 725 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h 804 (918)
.|.-+.|++..+.+|.+++++|.|.+||+.....+..+ .+.|
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~--------------------------------------~~~H 207 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA--------------------------------------SEAH 207 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccch--------------------------------------hhhc
Confidence 56689999999999999999999999998765433221 2458
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 805 TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 805 ~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
..+...|||+|... +|++.+.| .|.+||++......++.. ..++..++|.++|.+|++|...|.|..||++..+
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 89999999999665 88899999 999999987654444433 6789999999999999999999999999999876
Q ss_pred EE--EEcccCCCeEEEEEeCCC
Q 002471 883 TM--TLTAHEGLIAALAVSTET 902 (918)
Q Consensus 883 ~~--~~~~h~~~V~~la~spdg 902 (918)
.- .+..|...|++|+|-+.-
T Consensus 284 ~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 284 APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEeeecccceeEEEeeecc
Confidence 33 778999999999997764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-21 Score=198.04 Aligned_cols=246 Identities=21% Similarity=0.424 Sum_probs=197.1
Q ss_pred eecCCCCeEEEEEccCC--CEEEEEeCCCcEEEEECC----------------CCceeeEeccCCCCeEEEEECCC-CCE
Q 002471 634 VRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----------------TLKSKTNLEEHSSLITDVRFSPS-MPR 694 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~----------------~~~~~~~l~~h~~~V~~l~fspd-g~~ 694 (918)
.-.|.+.|+-+.-++-+ .+.|+-+..|.|.|||+. ..+++.++.+|...-+.|+|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34678888888877754 466666788999999974 24667888999999999999993 336
Q ss_pred EEEEeCCCeEEEEeCCCCCcee--EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEe
Q 002471 695 LATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 772 (918)
Q Consensus 695 Lasgs~Dg~V~Iwdl~~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s 772 (918)
|++|..-+.|++|...++...+ ..|.+|+..|-.|+|+|..+.+|++|+.||+|+|||++.+....
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~------------ 294 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA------------ 294 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc------------
Confidence 8888888889999998754433 45778999999999999999999999999999999999873211
Q ss_pred cCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002471 773 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 773 p~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
++ ..+.|...|+.|.|+.+..+|++|++| +++|||++..+....+..++.|..+
T Consensus 295 ------------------------~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 295 ------------------------AV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred ------------------------ee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 11 125688899999999988899999999 9999999998888999999999999
Q ss_pred eEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcE-----------------EEEccc--CCCeEEEEEeCC-CCEEEEEec
Q 002471 852 FHSCVFHPT-YPSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTE-TGYVASASH 910 (918)
Q Consensus 852 i~~i~~sp~-g~~l~s~s~dg~I~vwd~~~~~~-----------------~~~~~h--~~~V~~la~spd-g~~Lasgs~ 910 (918)
|+++.|+|. ...|++++.|..|.|||+....- ..+..| ...|..+.|++. -.+|++.+.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence 999999995 46688889999999999854321 023334 346888999874 348888888
Q ss_pred CCcEEEe
Q 002471 911 DKFVKLW 917 (918)
Q Consensus 911 Dg~I~IW 917 (918)
|| +.||
T Consensus 430 dG-fnVf 435 (440)
T KOG0302|consen 430 DG-FNVF 435 (440)
T ss_pred cc-eeEE
Confidence 98 4455
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=213.46 Aligned_cols=239 Identities=17% Similarity=0.267 Sum_probs=201.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002471 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 677 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 756 (918)
..|....+.|+|.++|+.|++++.||.|++|+..+....-.++..+...|.+++.... .|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999987753444455447888888887633 5669999999999999876
Q ss_pred e---eeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002471 757 S---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 832 (918)
Q Consensus 757 ~---~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwd 832 (918)
. .+..|.....+++|+.+|..+++|+.|-.|++.++.+......+++|+.+|.++.|+|.+++||+.+.| .|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 4 567778889999999999999999999999999999999999999999999999999999999999888 999999
Q ss_pred CCCCCCcceEEEec----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCE
Q 002471 833 VGSGSEGECVHELS----CN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGY 904 (918)
Q Consensus 833 l~s~~~~~~i~~~~----~~-~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~--~~h~~~V~~la~spdg~~ 904 (918)
+.++.....+..+. .. ...+..++|+|++..|++.+.|+.|++|+..+.+.. .+ ..+...+.++.|+|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 98774322222211 11 344677899999999999999999999999998876 33 334555999999999999
Q ss_pred EEEEecCCcEEEeC
Q 002471 905 VASASHDKFVKLWK 918 (918)
Q Consensus 905 Lasgs~Dg~I~IWd 918 (918)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=199.19 Aligned_cols=256 Identities=15% Similarity=0.220 Sum_probs=202.4
Q ss_pred EeCC-CcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 656 GGHD-KKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 656 gs~D-g~V~iwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
++.| .++.+||+.+|....++++.. ..-.++..- ++.+++++.. ...|.+|.+....... ...--.++|.++.-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3444 459999999999999988652 111111111 3456766654 5579999997633333 333456889999999
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECC---------CceEEEE
Q 002471 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE---------TQACRLS 800 (918)
Q Consensus 733 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~---------t~~~~~~ 800 (918)
|+|.+ ++.|+..|.|++|.+.+|..+..+.. .++++.|+.++..|++++.||.|.+|++. +-++++.
T Consensus 91 n~G~~-l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGYF-LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCceE-EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 99764 44676899999999999998887765 47889999999999999999999999753 3467888
Q ss_pred ecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002471 801 LQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 877 (918)
Q Consensus 801 l~~h~~~V~si~~spdg--~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd 877 (918)
+..|.-+|+.+...+.| .+|++++.| ++++||+..+ ..+..+.. ...+.+|+.+|.+..+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEec-CCcceeEEEcccccEEEecCCcceEEeee
Confidence 99999999999988754 389999999 9999999887 33433332 67899999999999999999999999988
Q ss_pred CCCCc-----------------EEEEcccCC--CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 878 MSENK-----------------TMTLTAHEG--LIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 878 ~~~~~-----------------~~~~~~h~~--~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.... ...+.+|.+ .|+|++++-||..|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 75322 125778888 999999999999999999999999997
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=199.38 Aligned_cols=241 Identities=22% Similarity=0.417 Sum_probs=191.3
Q ss_pred EEEEEcc-------CCCEEEEEeCCCcEEEEECCC---CceeeE------------------eccCCCCeEEEEECCC-C
Q 002471 642 ICCHFSS-------DGKLLATGGHDKKAVLWHTDT---LKSKTN------------------LEEHSSLITDVRFSPS-M 692 (918)
Q Consensus 642 ~~l~fsp-------dg~~Latgs~Dg~V~iwd~~~---~~~~~~------------------l~~h~~~V~~l~fspd-g 692 (918)
.|++|.. -|+|+|.|+.|..|.|||++- -.+..+ -.+|+..|.+|+|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 357999999999999999851 111111 2269999999999885 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEEeecCceEE
Q 002471 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQM 769 (918)
Q Consensus 693 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~~~~~~~~v 769 (918)
..||+||.|.+|++||+.+ +.+..++..|.+.|.++.|+|....++++|+.|++|.+.|.+. ......+.+.+..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 5789999999999999998 8889999999999999999999999999999999999999994 34456677899999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002471 770 RFQPHLG-RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHEL 845 (918)
Q Consensus 770 ~~sp~~~-~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~ 845 (918)
.|.+... .++++..||+|+-+|+|.. ++++++..|..+|.+|+++..-. ++++++.+ .|++|++..... +.+...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccc
Confidence 9999875 4666667899999999986 99999999999999999998555 78888888 999999965432 223222
Q ss_pred ccCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCcEE
Q 002471 846 SCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~-l~s~s~dg~I~vwd~~~~~~~ 884 (918)
...-+...|.++.|+-.+ +++|+..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222344677778887765 455566667999999877544
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=212.13 Aligned_cols=253 Identities=21% Similarity=0.341 Sum_probs=197.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC--------CCceeeEeccCCCCeEEEEECCCCCEEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~--------~~~~~~~l~~h~~~V~~l~fspdg~~Lasg 698 (918)
+|....+++.|.+.|++++|.+....|++|+.||+|++|++. ..+.+.+|++|.++|.|+++.+++..+++|
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 466667999999999999999999999999999999999982 346788999999999999999999999999
Q ss_pred eCCCeEEEEeCCC---------CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---Cc
Q 002471 699 SFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GT 766 (918)
Q Consensus 699 s~Dg~V~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~ 766 (918)
+.||+|+.|++.. .......+.||.+.|+.++++....+|+ +|+.||+|++|+...... .+|.. +.
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-scs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-eecCCceEEeeccCCcCc-cccCCccccC
Confidence 9999999995531 1234567889999999999999866655 999999999999887655 33321 22
Q ss_pred --eEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCC-------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002471 767 --AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGS 835 (918)
Q Consensus 767 --~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-------~~~V~si~~spdg~~Las~s~d-~I~iwdl~s 835 (918)
..+.+.... ...++...-+.-.++|.+....+..+... ...+.-+.++|...+.+++.++ .|+++|..+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 233332222 22222222333344444444333333321 1347788999999999999999 999999988
Q ss_pred CCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 836 ~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
+ ..++....|...++++++.|+|.+|++++.|+.|++|.+....++
T Consensus 521 ~---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 521 G---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred c---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 7 778888888999999999999999999999999999999877766
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=190.18 Aligned_cols=288 Identities=19% Similarity=0.354 Sum_probs=221.4
Q ss_pred cceeeeee-ecCCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEECCC-C--ceeeEec--cCCCCeEEEEECCC----
Q 002471 627 SFKEANSV-RASTSKVICCHFSS-----DGKLLATGGHDKKAVLWHTDT-L--KSKTNLE--EHSSLITDVRFSPS---- 691 (918)
Q Consensus 627 s~~~~~~l-~~H~~~V~~l~fsp-----dg~~Latgs~Dg~V~iwd~~~-~--~~~~~l~--~h~~~V~~l~fspd---- 691 (918)
.++....+ +.|+.+|..++|.. +...+|+++. ..|.||.... + ..+..+. .|......++|+-+
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 44444444 47889999999985 2346777764 4788888653 2 2223322 36777888888764
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec------C
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------G 765 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------~ 765 (918)
..+||.|+.-|.|||.|+.+ +.+...+.+|...|+.|.|+|+...|+++++.|-.||+||+.+..|+..|.+ +
T Consensus 105 ~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 34789999999999999997 7888999999999999999999999999999999999999999999999854 5
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCceE------E---------------------E-EecCCCCCeEEEEEcCCC
Q 002471 766 TAQMRFQPHLGRYLAAAAENVVSILDAETQAC------R---------------------L-SLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 766 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~------~---------------------~-~l~~h~~~V~si~~spdg 817 (918)
+.++.|+.++.++++++.|..|.+|++...+. . + +...|...|.|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 78899999999999999999999999884211 1 0 112366777777777 6
Q ss_pred CEEEEEeCC-eEEEEECCCC-----------CCcceEEEeccCCCceE--EEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 002471 818 ELLASVSED-SVRVWTVGSG-----------SEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCYQSLELWNMSENKT 883 (918)
Q Consensus 818 ~~Las~s~d-~I~iwdl~s~-----------~~~~~i~~~~~~~~~i~--~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~ 883 (918)
+++++-+.+ .|..|....- .....+.+++.....|+ ..+|.+-.+.|+.|...|.|++||++..+.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 888887776 9999987211 11223344444444444 445677789999999999999999988765
Q ss_pred E---E--EcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 884 M---T--LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 884 ~---~--~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
. + .......|...+|+.|+.+|+..++|++|--||
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3 2 223456799999999999999999999999886
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-22 Score=220.57 Aligned_cols=199 Identities=23% Similarity=0.381 Sum_probs=182.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
..+..|.+|..+|.||.|+.+..+|++|+.+|+|++||++..+.++++.+|...+..|.|+|-+.+++.|+.|+.+++||
T Consensus 61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD 140 (825)
T KOG0267|consen 61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWD 140 (825)
T ss_pred chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCC
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg 785 (918)
++. ..|...+.+|...|.+++|+|+|. +++++++|.+|+|||+..|+....|+ +.+..+.|+|..-.+..|+.|+
T Consensus 141 ~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 141 IRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred hhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence 996 678999999999999999999976 55699999999999999999998888 5667788899888888899999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 829 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~ 829 (918)
+|++||+++.+.+.........|.+++|++++..+++|....++
T Consensus 219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 99999999999999888888999999999999999988877544
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=192.49 Aligned_cols=284 Identities=19% Similarity=0.251 Sum_probs=214.3
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------CceeeEec-cCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~------~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
+.+.+.+|.++|++|.|+.++.+||+|+.|..++||+++. .+++.... .|...|.|++|...++.|++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 4566889999999999999999999999999999999863 24444443 3568999999999999999999999
Q ss_pred eEEEEeCCCCCceeEEecc--CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe------eeEEeecCceEEEEecC
Q 002471 703 TVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRVFKGGTAQMRFQPH 774 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~------~~~~~~~~~~~v~~sp~ 774 (918)
+|.+.|+++ +..+.++.. ..+.|+.+..+|. +++|++.+.++.|.+||++... |...+......+.|+|.
T Consensus 128 ~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIET-KQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeeccc-ceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999998 555555542 3358999999998 4566688999999999998754 22233345567889998
Q ss_pred CCEEEEE-EcCCeEEEEECCCceE-EEEe---cC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002471 775 LGRYLAA-AAENVVSILDAETQAC-RLSL---QG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 845 (918)
Q Consensus 775 ~~~ll~~-~~dg~I~i~D~~t~~~-~~~l---~~---h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~ 845 (918)
...|+++ ...+.+.+||.+.... +... .+ ......++.|+|+|..|.+.-.+ .-.+||+.+.. ..+..+
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~ 283 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKS 283 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEec
Confidence 8766554 5578899999987532 2211 11 12234678999999988877777 67788886532 122222
Q ss_pred cc------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC------------------------CcEEEEcccCCCeEE
Q 002471 846 SC------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE------------------------NKTMTLTAHEGLIAA 895 (918)
Q Consensus 846 ~~------~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~------------------------~~~~~~~~h~~~V~~ 895 (918)
.. ....+.+|+|..+.. +++|+.+-.|++|.+.. +....+.+|...++.
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 21 123466778876665 88888888999998742 123367899999999
Q ss_pred EEEeCCCCEEEEEecCCcEEEeC
Q 002471 896 LAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 896 la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.|++...+|++.+..+.++||-
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeecCCcceEeccchhhheeccc
Confidence 99999999999999999999993
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=185.29 Aligned_cols=224 Identities=16% Similarity=0.279 Sum_probs=176.7
Q ss_pred ceeeeeeecCCCCeEEEEEccCCC--EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~--~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
-+....+-.|.+.|+|+.|.++-. .|++|+.||.|.+|++..++++.++++|.+.|+.|+.+|.+++-++.+.|+.++
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr 152 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR 152 (362)
T ss_pred hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceee
Confidence 345667888999999999999765 899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEE-ecCCCEEEEEEcC
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-QPHLGRYLAAAAE 784 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~-sp~~~~ll~~~~d 784 (918)
.||+-++..-...-..+. -+.|.|+|.|+++++.+ ...|-+|.+++.+....+......++. .-+++.+++|..+
T Consensus 153 ~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred eehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCC
Confidence 999987433222222232 33499999998777554 467999999988777666555333322 2355789999999
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEE--cCCCCEEEEEeCC-eEEEEECCCCC--CcceEEEeccCCCceEEEE
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCW--DPSGELLASVSED-SVRVWTVGSGS--EGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~--spdg~~Las~s~d-~I~iwdl~s~~--~~~~i~~~~~~~~~i~~i~ 856 (918)
+.|.+||..+..+...+.+|+..|..+.+ .|++.+|++++.| .|+|||++... ....+.++.. ...++|+.
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~ 304 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLR 304 (362)
T ss_pred ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceee
Confidence 99999999999999999999999999984 4567899999988 99999997652 2234444433 34444443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-21 Score=214.06 Aligned_cols=236 Identities=19% Similarity=0.317 Sum_probs=193.0
Q ss_pred eEEEEEcc-CCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 641 VICCHFSS-DGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 641 V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~---~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
+..|.|.. +.++|||++..|.|.+||+.. .+.+..|..|...|++++|++ ...+|++||.||+|++||++. ...
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccc
Confidence 45567764 568999999999999999986 566778999999999999998 456899999999999999998 666
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeE---EeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTR---VFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~---~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
..++.+....|.++.|+|...+.|+++.+.|.+.+||++... +.. ...+.+.++.|+|+..+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 777888899999999999988899999999999999999754 333 3456789999999999999999999999999
Q ss_pred CCCceE--EEEecCCCCCeEEEEEcCCCC-EEEEEeC--C-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC-CCCEE
Q 002471 792 AETQAC--RLSLQGHTKPIDSVCWDPSGE-LLASVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSL 864 (918)
Q Consensus 792 ~~t~~~--~~~l~~h~~~V~si~~spdg~-~Las~s~--d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp-~g~~l 864 (918)
..+.+. +.++. ...+|.+|+|-|+.. .|++++. | .|+|||++.. ......+..|...++.++|.. |...+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCCceee
Confidence 986543 33333 457899999999877 6666654 3 8999999853 466778889999999999966 44567
Q ss_pred EEEEcCCeEEEEECCC
Q 002471 865 LVIGCYQSLELWNMSE 880 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~ 880 (918)
.+++.|+.|..-.+++
T Consensus 326 ~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKN 341 (839)
T ss_pred EeecCccHHHHhhhhc
Confidence 7888888766544433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=185.38 Aligned_cols=206 Identities=20% Similarity=0.336 Sum_probs=166.8
Q ss_pred ccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCC-----------cee---EEeccCCCCeeEEEEcCCCCeEEEE
Q 002471 677 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG-----------YSL---RTFMGHSASVMSLDFHPNKDDLICS 741 (918)
Q Consensus 677 ~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~-----------~~~---~~~~~h~~~V~sl~fsp~~~~ll~s 741 (918)
+.|.+.|+.+...+ .|+++++|+.||.|.|||+.+.. .++ ..-.+|...|.++.|.|-+..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45788999999988 68999999999999999998532 111 1223688899999999988889999
Q ss_pred EeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCC--CEEEE-EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC
Q 002471 742 CDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL--GRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 816 (918)
Q Consensus 742 gs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~--~~ll~-~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd 816 (918)
++.|.+++|||..+......|+ +.+..-+++|-. ..|++ +..+-.|++.|+.+|.+.+++.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999988776654 556666676654 23444 455678999999999999999999999999999998
Q ss_pred CC-EEEEEeCC-eEEEEECCCCC------------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 817 GE-LLASVSED-SVRVWTVGSGS------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 817 g~-~Las~s~d-~I~iwdl~s~~------------~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
.+ .|++|+.| .|++||++... ....+..-..|.+.|..++|..++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 88 67788888 99999998541 111222234567789999999999999999999999999998775
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=184.54 Aligned_cols=242 Identities=17% Similarity=0.239 Sum_probs=181.0
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC----ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcE
Q 002471 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748 (918)
Q Consensus 673 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~----~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 748 (918)
+..+++|.+.|+|++|+.||++|+|++.|++||||++++-. .+++.-. .-+.-+.+.|.||-..+++++-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 34578999999999999999999999999999999998521 1222111 112456799999999999899888999
Q ss_pred EEEEcCCCe---eeEE--------e----ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEE
Q 002471 749 RYWSINNGS---CTRV--------F----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 813 (918)
Q Consensus 749 ~iwdl~~~~---~~~~--------~----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~ 813 (918)
++|.+...+ .... | ...+..+-.-..+.++++++.|..|.+|+++ |..+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 999875432 1100 1 1122233344455677888889999999999 8888888777777788899
Q ss_pred cCCCCEEEEEeCC-eEEEEECCCC-----CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----
Q 002471 814 DPSGELLASVSED-SVRVWTVGSG-----SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----- 882 (918)
Q Consensus 814 spdg~~Las~s~d-~I~iwdl~s~-----~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~----- 882 (918)
+|+|++|++++.- .|+||.+--. .+...+..+++|...|..++|+++...+++.+.||+++|||++-.-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999888 8999997432 3345677899999999999999999999999999999999985321
Q ss_pred --EE-----EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 883 --TM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 883 --~~-----~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
++ .+..-.+.-..++++|+|..||.+. ...|++|
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 11 1222334445899999999887643 4456654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-21 Score=224.49 Aligned_cols=274 Identities=19% Similarity=0.281 Sum_probs=216.2
Q ss_pred eEEEEEccCCC-EEEEEe----------CCCcEEEEECCCC--c----eeeEeccCCCCeEEEEECCCCCE----EEEEe
Q 002471 641 VICCHFSSDGK-LLATGG----------HDKKAVLWHTDTL--K----SKTNLEEHSSLITDVRFSPSMPR----LATSS 699 (918)
Q Consensus 641 V~~l~fspdg~-~Latgs----------~Dg~V~iwd~~~~--~----~~~~l~~h~~~V~~l~fspdg~~----Lasgs 699 (918)
-..++|+|++. +||+|. .+.++-||.++.. + .+..+. .....++|+|.+.+.. ||.|.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccc
Confidence 34578999886 555543 3456667765422 2 222222 3456889999997665 88889
Q ss_pred CCCeEEEEeCCCC-----CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----ecCceEE
Q 002471 700 FDKTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQM 769 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~-----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v 769 (918)
+||.|.+||...- ...+..+..|++.|..|+|++..++++++|+.||.|.|||+.+-+.-..+ ...+.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999998751 23456778899999999999999999999999999999999886544333 3467888
Q ss_pred EEecCCCEEEEEE-cCCeEEEEECCCceEEEEecCCCC--CeEEEEEcCCCC-EEEEEeCC----eEEEEECCCCCCcce
Q 002471 770 RFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGEC 841 (918)
Q Consensus 770 ~~sp~~~~ll~~~-~dg~I~i~D~~t~~~~~~l~~h~~--~V~si~~spdg~-~Las~s~d----~I~iwdl~s~~~~~~ 841 (918)
+|+..-.++++.+ .+|.+.|||++..+.+..+..+.. .+..+.|+|+.. .|+++++| .|.+||+|... ..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cc
Confidence 9988877666654 567999999999988888876654 477899999876 45555544 79999998653 55
Q ss_pred EEEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC-EEEEEecCCcEEEe
Q 002471 842 VHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW 917 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~-~Lasgs~Dg~I~IW 917 (918)
++++.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+ .+......+..+.|+|... .|+.++-||.|-||
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 66778999999999999977 88999999999999999999998 7777888999999999776 78888999999987
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-20 Score=195.37 Aligned_cols=254 Identities=18% Similarity=0.242 Sum_probs=201.6
Q ss_pred EECCCCceeeEeccCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeCC---CCCceeEEeccCCCCeeEEEEcCCCCeEE
Q 002471 665 WHTDTLKSKTNLEEHSSLITDVRFSPSM--PRLATSSFDKTVRVWDAD---NPGYSLRTFMGHSASVMSLDFHPNKDDLI 739 (918)
Q Consensus 665 wd~~~~~~~~~l~~h~~~V~~l~fspdg--~~Lasgs~Dg~V~Iwdl~---~~~~~~~~~~~h~~~V~sl~fsp~~~~ll 739 (918)
+|+.+......++.+...|++++|+|.. ++||+|..-|.|-+||+. ....-+..+..|..+|.+|.|+|.+...|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4445556667777889999999999954 478888889999999994 33345778889999999999999988888
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCCCEEEEEEcCCeEEEEECCCceE-EEEecCCCCCeEEEEE
Q 002471 740 CSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW 813 (918)
Q Consensus 740 ~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~si~~ 813 (918)
++.+.||+|++-|++.......+.. ....+.|+.+...++++..=|.+.+||.+++.. ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999988653333322 234566777888888888878999999998755 6667779999999999
Q ss_pred cCCCC-EEEEEeCC-eEEEEECCCCCCcc-eEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCcEEEE
Q 002471 814 DPSGE-LLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL 886 (918)
Q Consensus 814 spdg~-~Las~s~d-~I~iwdl~s~~~~~-~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~----~~~~~~~ 886 (918)
+|-.. +|++++.| +++|||++.-.... .+.....|...|.++.|+|.+-.|++.+.|..|+|||.. ..+....
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 99666 88999999 99999998764433 345555678899999999999889999999999999984 2233333
Q ss_pred cccCC------CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 887 TAHEG------LIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 887 ~~h~~------~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..|.. ......|.|+..+|++|-.-..|-|||
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33332 234568999999999999888888875
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=221.46 Aligned_cols=242 Identities=19% Similarity=0.359 Sum_probs=200.9
Q ss_pred CCCeEEEEEccCCCE----EEEEeCCCcEEEEECCC------CceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEE
Q 002471 638 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDT------LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 706 (918)
Q Consensus 638 ~~~V~~l~fspdg~~----Latgs~Dg~V~iwd~~~------~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~I 706 (918)
..+.++++|.+.|.. ||.|.+||.|.+||... ...+.++..|.+.|..|.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 446788999987765 89999999999999764 244566778999999999999755 9999999999999
Q ss_pred EeCCCCCceeEE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCCCE-EE
Q 002471 707 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGR-YL 779 (918)
Q Consensus 707 wdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~-ll 779 (918)
||+.+....... -....+.|.+|+|+..-.++|++++.+|.+.|||++..+.+-.+.. +...+.|+|+... ++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875444332 2235678999999998889999999999999999999876666543 3457899999854 55
Q ss_pred EEEcCC---eEEEEECCCc-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 780 AAAAEN---VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 780 ~~~~dg---~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
+++.|. .|.+||+|.. ..+.++++|...|.++.|++.+ ++|++++.| .|.+|+.+++ +.+.++...++++.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence 555543 7999999865 5677788999999999999966 799999999 9999999987 78888888889999
Q ss_pred EEEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 002471 854 SCVFHPTYP-SLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 854 ~i~~sp~g~-~l~s~s~dg~I~vwd~~~~~ 882 (918)
.+.|+|... .|++.+.||.|.||.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999887 77888999999999987665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=196.88 Aligned_cols=269 Identities=17% Similarity=0.268 Sum_probs=212.5
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEe
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 719 (918)
.|..++|-|||.-|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+++|+|+.|+.|.||.-.-.+. .-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---ee
Confidence 899999999999888775 55899999999999999999999999999999999999999999999998764332 22
Q ss_pred ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-EeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEE
Q 002471 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 798 (918)
Q Consensus 720 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~ 798 (918)
..|.+.|.|+.|+|-.. .+++|+- ...-+|........+ .....+.++.|..+|.+++.|-.+|+|.|-+....+.+
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 35999999999999855 4557764 457788876544332 22345677889999999999999999999865433322
Q ss_pred EE--ecCCCCCeEEEEEcCCC-----CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002471 799 LS--LQGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 799 ~~--l~~h~~~V~si~~spdg-----~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d 870 (918)
.. -.+..++|.+|+|+|.. ..+++...+ ++.+|.+.. ..+..-+.-+....|+.+.++|.++++|++|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 22 22467899999999953 367777777 788887743 2232222234456788999999999999999
Q ss_pred CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 871 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 871 g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.+++|.-+.-.+-++...+..|+.++..|++.+++.|+.||+|--|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999866555557777889999999999999999999999997653
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=199.43 Aligned_cols=247 Identities=15% Similarity=0.247 Sum_probs=187.0
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEe
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWD 708 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~--l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwd 708 (918)
.....|.+.|.++.|-|....|++++.|.++++||++..+++.. +.+|...|.+++|.+++ ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 44568999999999999778999999999999999998888777 88999999999999954 5789999999999999
Q ss_pred CCCCCc--------------------------eeEEeccCCCCeeE---EEEcCCCCeEEEEEeC-CCcEEEEEcCCCee
Q 002471 709 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC 758 (918)
Q Consensus 709 l~~~~~--------------------------~~~~~~~h~~~V~s---l~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~ 758 (918)
++-.+. .++..+.+...|.+ +.+..|.. .|++++. |+.|+|||++...+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeeccccc
Confidence 974220 01222334444544 44555645 4556666 99999999997654
Q ss_pred eEEe--------------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCc--eEEEEecCCCCC--eEEEEEcCCCCEE
Q 002471 759 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL 820 (918)
Q Consensus 759 ~~~~--------------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~--V~si~~spdg~~L 820 (918)
.... ..+..++.....|.++++.+.|+.|++|++.+. .++..+.++... ...-..+||+.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 3221 123456777778899999999999999999875 344444443322 2223568999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~~~~ 881 (918)
++|+.| ..++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|-.++||++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999 99999998764 3445567788899999998743 34777799999999999654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=189.86 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=200.8
Q ss_pred eeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceee--EeccCC-CCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 630 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
.+..+.-...+|.+++|.|+|. .+++++....+++||+.+.+... .+.++. ..+.....++++.+|+..+..|.|.
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence 4555666677999999999998 99999999999999998766433 333443 4577888999999999999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEEEEecCCCEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~ll~~ 781 (918)
|....+ +..+..++ -.+.|.+++|+.++..++ +++.+|.|.+||++...|++.+.. +.+.++.+.++.++++|
T Consensus 329 lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 329 LLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATG 405 (514)
T ss_pred eehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEec
Confidence 999887 66666666 567899999999987766 566689999999999999998863 45678888999999999
Q ss_pred EcCCeEEEEECCC------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeccCCCce
Q 002471 782 AAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 782 ~~dg~I~i~D~~t------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
+..|.|.|||..+ .+++..+..-...|+++.|++|..+|+.++.. .+|+..+.+.....-.-.....-+.+
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 9999999999654 46777777777889999999999999988865 79998886652222222222334568
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
+|++|+|.+.++++|..+|.|.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999999999999999874
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=196.98 Aligned_cols=291 Identities=19% Similarity=0.266 Sum_probs=222.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCc---------------------eeeE-------
Q 002471 627 SFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLK---------------------SKTN------- 675 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg---~~Latgs~Dg~V~iwd~~~~~---------------------~~~~------- 675 (918)
+|..+..++||++.|.+|+|..-+ -+||++|.|..||||.+.-+. ....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 788999999999999999998744 489999999999999864211 1111
Q ss_pred ---eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce------eEEeccCCCCeeEEEEcCCCCeEEEEEeCCC
Q 002471 676 ---LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS------LRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746 (918)
Q Consensus 676 ---l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 746 (918)
+.+|.+.|.++.|+|.+..|++++.|+++.||..++.... +....+.....++.-|+|+++.+ ++-+..|
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i-i~~g~~G 338 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI-IAHGRTG 338 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE-EEecccC
Confidence 2389999999999999999999999999999988763211 11222344568889999998654 4778899
Q ss_pred cEEEEEcCCCe-e--eEEe---ecCceEEEEecCCCEEEEEEcCCeEEEEECCC----ceEEEEecCCCCCeEEEEEcCC
Q 002471 747 EIRYWSINNGS-C--TRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPS 816 (918)
Q Consensus 747 ~I~iwdl~~~~-~--~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t----~~~~~~l~~h~~~V~si~~spd 816 (918)
..++|...... . ...+ ..++..+.|.|.|.++++++.|-+-++|-.-. ...+..-..|...++|++|-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 99999833221 1 1122 23567899999999999999999999986541 1223333458888999999986
Q ss_pred CCEEEEEeCC-eEEEEECCCC-------------------------------------------CC--------------
Q 002471 817 GELLASVSED-SVRVWTVGSG-------------------------------------------SE-------------- 838 (918)
Q Consensus 817 g~~Las~s~d-~I~iwdl~s~-------------------------------------------~~-------------- 838 (918)
...|++|.+. -+|+|+.... ..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 5567777777 7899974210 00
Q ss_pred ----------------cceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE-EEcccCCCeEEE
Q 002471 839 ----------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM-TLTAHEGLIAAL 896 (918)
Q Consensus 839 ----------------~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-----~I~vwd~~~~~~~-~~~~h~~~V~~l 896 (918)
...++.+-+|+..|.+++.+|+++.+++++... .|++|+..+-... .+.+|.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 001123456888999999999999999987653 7999999887776 699999999999
Q ss_pred EEeCCCCEEEEEecCCcEEEeC
Q 002471 897 AVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 897 a~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|+|||++|++++.|.++.+|+
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EECCCCcEEEEeecCceEEeee
Confidence 9999999999999999999995
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-17 Score=182.53 Aligned_cols=293 Identities=30% Similarity=0.495 Sum_probs=231.5
Q ss_pred CCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-
Q 002471 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 693 (918)
Q Consensus 616 ~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~- 693 (918)
....|+... .......+..|...|.+++|++++.++++++. |+.+++|++...+.+..+.+|...|.+++|+|++.
T Consensus 135 ~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 135 TVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred cEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 334444433 25778889999999999999999999999886 99999999999899999999999999999999998
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEe---ecCceE
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQ 768 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~ 768 (918)
.+++++.|+.|++||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++||++.... +..+ ...+.+
T Consensus 213 ~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (466)
T COG2319 213 LIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289 (466)
T ss_pred EEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEE
Confidence 555558999999999885 55666 688888876 44899998 4555999999999999987664 4444 345677
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEec--CCCCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEE
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHE 844 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~Las~-s~d-~I~iwdl~s~~~~~~i~~ 844 (918)
+.|.|++..+++++.|+.+.+||..+........ .|...|..+.|.+++..++.+ ..+ .+.+|++.... ....
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~ 366 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKT 366 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEE
Confidence 7899988888888888889999999887776665 788889999994332555555 566 88889998764 2222
Q ss_pred eccCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 845 LSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 845 ~~~~~~~i~~i~~sp~g~~l~s-~s~dg~I~vwd~~~~~~~~~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
... ...+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+.+++.++++++.++.+++|+
T Consensus 367 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 367 LEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred ecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 222 22278888888 533444 578899999999999888555544 8899999999999999999999999996
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=195.74 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=198.4
Q ss_pred ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEE
Q 002471 671 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (918)
Q Consensus 671 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 750 (918)
.+-..+++|++.|.||...|.|.+|++|+.||+||||.+.+ +.|++++. ..+.|.||+|+|.+..-|++...+..+.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 34556789999999999999999999999999999999998 88888876 56689999999987765545554555666
Q ss_pred EEcCCCe---------------------------------------eeE-EeecCceEEEEecCCCEEEEEEcC---CeE
Q 002471 751 WSINNGS---------------------------------------CTR-VFKGGTAQMRFQPHLGRYLAAAAE---NVV 787 (918)
Q Consensus 751 wdl~~~~---------------------------------------~~~-~~~~~~~~v~~sp~~~~ll~~~~d---g~I 787 (918)
.+..-|. |+. .....+..+.|+..|.+|+++..+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 6543221 010 112245668899999999998775 479
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002471 788 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 867 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~ 867 (918)
.|+++...+....|....+.|.++.|+|...+|++++...|+|||+... ..++.+......|..++.||.|..|+++
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 9999988776666766778899999999999999999999999999764 5556666667789999999999999999
Q ss_pred EcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 868 GCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
+.|+.++.||+.-.... ++.-|...|++++|++.-.++++|+.||++.||
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999999999766433 788999999999999999999999999999987
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-19 Score=179.90 Aligned_cols=268 Identities=18% Similarity=0.276 Sum_probs=204.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCC-----C-------ceeeEec-cCCCCeEEEEEC-------CCCCEEEEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----L-------KSKTNLE-EHSSLITDVRFS-------PSMPRLATS 698 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~-----~-------~~~~~l~-~h~~~V~~l~fs-------pdg~~Lasg 698 (918)
.-...+.|+|||..|++-+.|..+.+|++.. . +....++ .....|.+.+|- |+..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 3456789999999999999999999998741 1 1111122 234568888886 467789999
Q ss_pred eCCCeEEEEeCCCCCceeEEecc--CCC---CeeEEEEcCCCCeEEEEEeCCCcEEEEEc-CCCeeeEEe----------
Q 002471 699 SFDKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRVF---------- 762 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~~~~~~~~--h~~---~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl-~~~~~~~~~---------- 762 (918)
+.|.-|++||.-+ ++....+.+ |-+ ...+++|+|||..|+ ++....|++||+ +.|.....+
T Consensus 130 sr~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 SRDQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cccCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999988 444444432 333 345799999998776 566899999999 555422221
Q ss_pred ecCceEEEEecCCC-EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCc
Q 002471 763 KGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG 839 (918)
Q Consensus 763 ~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~ 839 (918)
.+-+.+++|+|... .+++++...++-||.-....++..+.+|.+.|+.++|.++|+.|++|... .|..||++...
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-- 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-- 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--
Confidence 23457788999876 66777778899999998999999999999999999999999999999865 99999998653
Q ss_pred ceEEEeccCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEE-EEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 840 ECVHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTM-TLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 840 ~~i~~~~~~~~---~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~-~~~~-~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
..+..+..|.. .-.-+...|++.+|++|+.||.|++||+++ +..+ .+..+...|+.++++|--.++|+++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 34444444433 223345678999999999999999999998 5544 677899999999999998888887643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-19 Score=178.83 Aligned_cols=273 Identities=15% Similarity=0.226 Sum_probs=200.7
Q ss_pred cccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeee
Q 002471 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 556 k~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~ 632 (918)
.-++.|++-|.+++. ++.+-|||..+ +...+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T----------------------------------------------~~iar 59 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT----------------------------------------------FRIAR 59 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc----------------------------------------------cchhh
Confidence 457889999998876 34445676543 33445
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADN 711 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~Iwdl~~ 711 (918)
.+.+|..+|.|++||+||++|+|++.|..|++||+..+.+++.++ ...+|+.+.|+|.... +++.-.+..-.+-++..
T Consensus 60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 677899999999999999999999999999999999999888887 5778999999995443 33333344455555554
Q ss_pred CCceeEEecc---CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEEEEecCCCEEEEEEcC
Q 002471 712 PGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 712 ~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~ll~~~~d 784 (918)
+...+..... -...-.+..|.+.|+++ ++|...|.+.++|..+.+|+..++- .+..+.++..+..++.-+.|
T Consensus 139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~yI-itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 139 PKHSVLPKDDDGDLNSSASHGVFDRRGKYI-ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred CceeeccCCCccccccccccccccCCCCEE-EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 2221111111 01112223577777654 5999999999999999999988864 45668899999999999999
Q ss_pred CeEEEEECCCc-------e--EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCC-C
Q 002471 785 NVVSILDAETQ-------A--CRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNG-N 850 (918)
Q Consensus 785 g~I~i~D~~t~-------~--~~~~l~~--h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~-~ 850 (918)
..|+.|+++.- + ..+.+.. .+..-.+++|+.+|.|+++++.. .++||.-..| ..++.+.+.. .
T Consensus 218 RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE 294 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGE 294 (405)
T ss_pred ceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchh
Confidence 99999998732 1 1111111 22345688999999999998877 8999999887 5666666655 5
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
....+.|+|-...+++. ..|.|++|....
T Consensus 295 ~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 295 ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecccccceeeeeec-cCCceEEEEeec
Confidence 57788999998877777 778999998654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-19 Score=183.50 Aligned_cols=212 Identities=19% Similarity=0.362 Sum_probs=160.3
Q ss_pred cceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCcee---eEeccCCCCeEEEEECCC-CCEEEEEeCC
Q 002471 627 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPS-MPRLATSSFD 701 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~~~~~---~~l~~h~~~V~~l~fspd-g~~Lasgs~D 701 (918)
.++++.++.+|...=+.|+|||- ...|++|..-+.|++|...++.-. ..|.+|+..|.+|.|+|. ...|++||.|
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC
Confidence 67889999999999999999993 236889988899999998775432 346679999999999995 5588999999
Q ss_pred CeEEEEeCCCC-CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEE
Q 002471 702 KTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 702 g~V~Iwdl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~ 780 (918)
|+|+|||++.+ .+.....+.|.+.|+.|.|+..-. +|++|+.||+++|||++..+
T Consensus 280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~----------------------- 335 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFK----------------------- 335 (440)
T ss_pred ceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhcc-----------------------
Confidence 99999999974 233444588999999999998866 88899999999999998643
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcc--------e-------EE
Q 002471 781 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGE--------C-------VH 843 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~--------~-------i~ 843 (918)
.+.++..|+-|..+|++|.|+|... .|++++.| .|.|||+....... . +.
T Consensus 336 -------------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLL 402 (440)
T KOG0302|consen 336 -------------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLL 402 (440)
T ss_pred -------------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeE
Confidence 2355667788999999999999544 66666666 99999996542210 0 11
Q ss_pred EeccCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 002471 844 ELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELW 876 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~vw 876 (918)
.+......+..+.||+..+ +|++.+.|| +.||
T Consensus 403 FVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 403 FVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 1111234567788988765 455555555 4444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-17 Score=183.10 Aligned_cols=282 Identities=30% Similarity=0.537 Sum_probs=228.2
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeeEeccCC-CCeEEEEE-CCCCC-EEEEEeC-CCeEEEE
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHS-SLITDVRF-SPSMP-RLATSSF-DKTVRVW 707 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-~~~~l~~h~-~~V~~l~f-spdg~-~Lasgs~-Dg~V~Iw 707 (918)
.+..|...|.++.|.+.+..++.++.|+.|.+|+..... .+..+..+. ..+..+.+ ++++. +++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998776 677777644 37888887 88887 5555455 9999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEE-E
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A 782 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~-~ 782 (918)
|+.........+..|...|.+++|+|++.. +++++. |+.+++|++..+..+..+.+ .+.++.|.+++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 998645677888899999999999999874 446664 99999999998777777764 56788899888745554 7
Q ss_pred cCCeEEEEECCCceEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 783 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~-~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
.|+.|++||...+..+. .+.+|...+ ...|++++.++++++.+ .+++|+++.... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999888887 688888876 44899999888888888 999999987644 23333566889999999998
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCEEEEE-ecCCcEEEeC
Q 002471 861 YPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 918 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~~-~~--~~h~~~V~~la~spdg~~Lasg-s~Dg~I~IWd 918 (918)
+..+++++.|+.+.+||+...... .. ..|...|..+.|.+++..++.+ ..|+.+++|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888999999988999999888766 33 3788889999994332455555 6888898885
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=188.42 Aligned_cols=136 Identities=23% Similarity=0.409 Sum_probs=110.4
Q ss_pred EcCCeEEEEECCCce-E----EEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCC----cceEEEeccCCC
Q 002471 782 AAENVVSILDAETQA-C----RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSE----GECVHELSCNGN 850 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~-~----~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~----~~~i~~~~~~~~ 850 (918)
+..|.|.||+++..- . +-.+ -....|+.+.|+| |...|+++++| .|++|.+..+.. ......+..|..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 345677777776531 1 1111 1346799999999 56689999988 999999976532 345567888999
Q ss_pred ceEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 851 KFHSCVFHPT-YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 851 ~i~~i~~sp~-g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|+.+.|||- ...|++++.|-+|++||+.+.+.. .+.+|.+.|..++|+|+|+.+|+.+.||+|+||+
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999999994 467888999999999999999877 8999999999999999999999999999999985
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=180.42 Aligned_cols=281 Identities=18% Similarity=0.208 Sum_probs=202.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
.+...+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 45678889999999999998875 8999999999999999999999998 67888999998887 578889999999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC-cEEEEEcCC-----------CeeeEEee-------cCceE
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSINN-----------GSCTRVFK-------GGTAQ 768 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-~I~iwdl~~-----------~~~~~~~~-------~~~~~ 768 (918)
++.. ... ...|.-.++++-|++.. +...+... ..-+|+-+. ...+...+ +.+.+
T Consensus 83 ~ia~-s~~---i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 83 TIAY-SAF---ISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred EccC-cce---EEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 9985 222 22344555666665431 11211111 111121111 11111111 12233
Q ss_pred EEEecC-CC--EEEEEEcCCeEEEEECCCc----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002471 769 MRFQPH-LG--RYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 834 (918)
Q Consensus 769 v~~sp~-~~--~ll~~~~dg~I~i~D~~t~----------~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~ 834 (918)
..+... +. .+++|..+|.|.+||+.++ +.+.....|..+|.++.|.+....=++++.+ .+..|.+.
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 332222 22 3445566899999999997 3344455789999999999866555666666 88888886
Q ss_pred CCC-CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 835 SGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 835 s~~-~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
... ....-.++......+..+.+-||++.+++++.|+.|+||..++...+ .+.-|.+.|++++|+|+..++|+++.|+
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 431 11222233333556888899999999999999999999999999988 7888999999999999999999999999
Q ss_pred cEEEeC
Q 002471 913 FVKLWK 918 (918)
Q Consensus 913 ~I~IWd 918 (918)
.|.+||
T Consensus 316 rISLWk 321 (323)
T KOG0322|consen 316 RISLWK 321 (323)
T ss_pred eEEeee
Confidence 999997
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=181.35 Aligned_cols=295 Identities=20% Similarity=0.290 Sum_probs=206.0
Q ss_pred ccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC--
Q 002471 591 LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-- 668 (918)
Q Consensus 591 ~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-- 668 (918)
.++.++.|.++..|.-.-+..... ..+.+....|..|...|++|.|+|+|.+||+|+.+|.|.+|...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 445666777777773322111100 03667788899999999999999999999999999999999755
Q ss_pred ------C--------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC
Q 002471 669 ------T--------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734 (918)
Q Consensus 669 ------~--------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~ 734 (918)
+ ....+.+.+|...|..++|++++.++++++.|..+++||+.. +.....+.+|...|..++|.|.
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchh
Confidence 2 345567789999999999999999999999999999999998 7888999999999999999998
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce-EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEE
Q 002471 735 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 813 (918)
Q Consensus 735 ~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~ 813 (918)
+. +|++-+.|...+.+.+.....+......+. ...+... .....++|--++.+ .-.+.++|
T Consensus 177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~--------e~~s~rLfhDeTlk---------sFFrRlsf 238 (434)
T KOG1009|consen 177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER--------EGKSTRLFHDETLK---------SFFRRLSF 238 (434)
T ss_pred hh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC--------CcceeeeeecCchh---------hhhhhccc
Confidence 65 455888888788777765554433321000 0000110 11233333333221 33567789
Q ss_pred cCCCCEEEEEeCC----------eEEEEECCCCCCcceEEEeccCCCceEEEEEeC-----------------CCCEEEE
Q 002471 814 DPSGELLASVSED----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-----------------TYPSLLV 866 (918)
Q Consensus 814 spdg~~Las~s~d----------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp-----------------~g~~l~s 866 (918)
+|||.+|++...- ..++|+-.. ....+..+.+-......+.|+| -.+.+++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~--l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD--LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeecccc--ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 9999988765421 234554332 2234444444444444444433 1234566
Q ss_pred EEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 867 IGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 867 ~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
....+.|+|||..+.+.+ .-.-|-..|++++|++||.+|+..+.||...+
T Consensus 317 iAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 667789999999998877 34468999999999999999999999997643
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-20 Score=208.23 Aligned_cols=275 Identities=21% Similarity=0.373 Sum_probs=216.5
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
..+.++.|.+|.+.|+|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|++++.+.+..++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-----ee--cCceEEEEecCCCEEE
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FK--GGTAQMRFQPHLGRYL 779 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-----~~--~~~~~v~~sp~~~~ll 779 (918)
|.+.+ +.++..+.+|++.|++|+|+|-- +.+.||++++||.+-.-.+.. +. .-+..+-|...+..++
T Consensus 259 Wrl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 259 WRLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 99998 88899999999999999999863 778899999999982211111 11 1233455666677788
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
+++.|+.-..|...... .+...+.-+.++.+- .+.++.-.+ .+++|++.++ ..++.+.+|...+..+.+
T Consensus 333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeee
Confidence 88888887777654321 122222222333232 355555566 8999999877 566777788899999999
Q ss_pred eCCCCEE-EEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 858 HPTYPSL-LVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 858 sp~g~~l-~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
||-...+ ..++.||.+.|||+-.+..+ ...+ .+.+...+|+++|..++...+-|.+.|.
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 9977654 56788999999999998877 2334 5567778999999988877777777764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=181.73 Aligned_cols=234 Identities=16% Similarity=0.341 Sum_probs=180.6
Q ss_pred eEEEEECC-------CCCEEEEEeCCCeEEEEeCCCCC--ceeEE------------------eccCCCCeeEEEEcCCC
Q 002471 683 ITDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLRT------------------FMGHSASVMSLDFHPNK 735 (918)
Q Consensus 683 V~~l~fsp-------dg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~------------------~~~h~~~V~sl~fsp~~ 735 (918)
-.|+.|.. .|+++|.|+.|..|.|||++--. .+... -.+|+..|.+|.|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 36799999999999999986311 11111 22699999999999998
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCC-EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEE
Q 002471 736 DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSV 811 (918)
Q Consensus 736 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si 811 (918)
.++|++|+.|.+|++||+.++++..++. ..+.++.|++... .+++|+.|++|.++|.|........-...+.|..+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 9999999999999999999999988875 4678899999875 56778889999999999532222222245779999
Q ss_pred EEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcEEEEcc
Q 002471 812 CWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTMTLTA 888 (918)
Q Consensus 812 ~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~vwd~~~~~~~~~~~ 888 (918)
+|.+... .++++.+| +|+-+|+|... +++..+..|...|.+++++...+ .+++++.|+.|++|++..........
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 9999776 55566666 99999999754 88999999999999999988654 57788899999999987655443333
Q ss_pred cC---CCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 002471 889 HE---GLIAALAVSTETG-YVASASHDKFVKLWK 918 (918)
Q Consensus 889 h~---~~V~~la~spdg~-~Lasgs~Dg~I~IWd 918 (918)
|. +...|+++.|+-. +++.|+..+.++|||
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEee
Confidence 33 3466777777654 577788888899997
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-19 Score=191.88 Aligned_cols=291 Identities=19% Similarity=0.309 Sum_probs=228.0
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECC--CCCEEEEEeCCCe
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKT 703 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~ 703 (918)
.+.....|..|.+.|..|.|...|..|++|+.|..|.+||+..+..+..+. +|...|.-..|-| +...|++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 456677899999999999999999999999999999999999888777765 7999999999988 4567999999999
Q ss_pred EEEEeCCCCCce--eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---------cCceEEEEe
Q 002471 704 VRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQ 772 (918)
Q Consensus 704 V~Iwdl~~~~~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~s 772 (918)
|++=.+...+.+ ...+..|.+.|..++.-|+..+-|.+|+.|+.|.-+|++.+.....+. .....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 999988764544 345667999999999999999999999999999999998875433321 133557777
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCceEE------EEec------CCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCC
Q 002471 773 PHLG-RYLAAAAENVVSILDAETQACR------LSLQ------GHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 838 (918)
Q Consensus 773 p~~~-~ll~~~~dg~I~i~D~~t~~~~------~~l~------~h~~~V~si~~spdg~-~Las~s~d~I~iwdl~s~~~ 838 (918)
|... .+++++.|-.+++||.+..... ..+. .....|++++|+.++. +|++..+..|++|.-..+.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 8775 6777888999999998753221 2221 2344699999997665 66666666999995433211
Q ss_pred --c-------ceEE-EeccCCCc--eEEEE-EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002471 839 --G-------ECVH-ELSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 904 (918)
Q Consensus 839 --~-------~~i~-~~~~~~~~--i~~i~-~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~ 904 (918)
. ..++ .+++|.+. |..+- |-|...|+++|+.-|.|.||+-.+++++ .+.+....|+||.=+|--.+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 0 1122 25666543 55554 6788899999999999999999999988 55666669999999999999
Q ss_pred EEEEecCCcEEEe
Q 002471 905 VASASHDKFVKLW 917 (918)
Q Consensus 905 Lasgs~Dg~I~IW 917 (918)
||+++-|..|+||
T Consensus 451 LAsSGid~DVKIW 463 (559)
T KOG1334|consen 451 LASSGIDHDVKIW 463 (559)
T ss_pred hhccCCccceeee
Confidence 9999999999999
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=182.67 Aligned_cols=258 Identities=14% Similarity=0.210 Sum_probs=194.4
Q ss_pred EeCCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCCCC--ce-eEEeccCCCCeeEE
Q 002471 656 GGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPG--YS-LRTFMGHSASVMSL 729 (918)
Q Consensus 656 gs~Dg~V~iwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~-Lasgs~Dg~V~Iwdl~~~~--~~-~~~~~~h~~~V~sl 729 (918)
++...+++|||+...+....+-.| .-.|..++|.....+ +++.+.|+.|++|.-.... .+ ++...+. .-.|+
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv 85 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCV 85 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHH
Confidence 334458999998866555554433 234999999886642 2334568999999765421 11 2222222 33333
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCC-C
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-T 805 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-~ 805 (918)
+..... .++++|+..++|+|||++...+.+.++++ +.++.+...+.++++++..|.|.|..+.++....+|... .
T Consensus 86 ~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg 164 (673)
T KOG4378|consen 86 ACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG 164 (673)
T ss_pred hhhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence 333332 46679999999999999977777777664 567888888899999999999999999998877777644 4
Q ss_pred CCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 002471 806 KPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 806 ~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~vwd~~~~~ 882 (918)
..|+-+.|++..+ +|.+++++ .|.+||+.... ........|..+...|+|+|... .|++.+.|+.|.+||+...+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCC--cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 4577899999887 56667777 99999997542 34555677889999999999764 56778999999999999888
Q ss_pred EEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 883 TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.......+.+...++|.++|.+|+.|+..|.|..||
T Consensus 243 s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 243 STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred ccceeeecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 776667778899999999999999999999999987
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=168.64 Aligned_cols=248 Identities=22% Similarity=0.323 Sum_probs=177.2
Q ss_pred cceeeeeeecCCCCeEEEEEcc-CCCEEEEEeCC-------CcEEEEECCC---------CceeeEec-cCCCCeEEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT---------LKSKTNLE-EHSSLITDVRF 688 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~D-------g~V~iwd~~~---------~~~~~~l~-~h~~~V~~l~f 688 (918)
+.-..+.|..|.+.|+.|+-+| |.++|+|+..+ ..+.||.+.. .+++..+. .+-+.|.||.|
T Consensus 52 s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 52 SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW 131 (370)
T ss_pred chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE
Confidence 3334556788999999999999 55666666542 3578998753 33444554 56678999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCceeEEec-----cCCCCeeEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002471 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVF 762 (918)
Q Consensus 689 spdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~-----~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 762 (918)
.|++..|++-. |..|.+|++....+.+..+. .+....++-+|+|. ..+.+ ....|+++..||+++.++...+
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI 209 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSI 209 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE-EEeCCCcEEEEEccchhhhcch
Confidence 99999998876 88899999987544332222 23445556666662 22233 2233566666666654433222
Q ss_pred ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcc
Q 002471 763 KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGE 840 (918)
Q Consensus 763 ~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~ 840 (918)
. ..|...|+.+.|+|+.. +|++|++| .|+|||.+.. ..
T Consensus 210 ~--------------------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--k~ 249 (370)
T KOG1007|consen 210 E--------------------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--KF 249 (370)
T ss_pred h--------------------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--Cc
Confidence 1 34778899999999877 77888888 9999999865 36
Q ss_pred eEEEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC------------------------------CcEEEEccc
Q 002471 841 CVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSE------------------------------NKTMTLTAH 889 (918)
Q Consensus 841 ~i~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~~~------------------------------~~~~~~~~h 889 (918)
.+.++..|...|+++.|+|.. ..|++++.|..|.+|.... |.+.++..|
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 788999999999999999965 5678889999999996532 112256679
Q ss_pred CCCeEEEEEeCCCC-EEEEEecCCcEEE
Q 002471 890 EGLIAALAVSTETG-YVASASHDKFVKL 916 (918)
Q Consensus 890 ~~~V~~la~spdg~-~Lasgs~Dg~I~I 916 (918)
++.|++++|+.-.. +||+-+.||+|.|
T Consensus 330 EDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 330 EDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccceEEEeeccCCCeeEEEeccCceEEe
Confidence 99999999987655 5778899999876
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-17 Score=165.88 Aligned_cols=218 Identities=23% Similarity=0.381 Sum_probs=162.7
Q ss_pred cceeeeeeecCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEECC---------CCceeeEeccCCCCeEEEEECCC--CC
Q 002471 627 SFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLEEHSSLITDVRFSPS--MP 693 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~V~iwd~~---------~~~~~~~l~~h~~~V~~l~fspd--g~ 693 (918)
+|......+.|.+.|..|.|.+ -|..+|+++.|++|.||.-. ......++......|++|.|.|. |-
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL 127 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL 127 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce
Confidence 7888889999999999999976 68999999999999999751 22345667778889999999994 77
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeE------------EeccCCCCeeEEEEcCCC--CeEEEEEeCC-----CcEEEEEcC
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLR------------TFMGHSASVMSLDFHPNK--DDLICSCDGD-----GEIRYWSIN 754 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~------------~~~~h~~~V~sl~fsp~~--~~ll~sgs~D-----g~I~iwdl~ 754 (918)
.||+++.||+||||+.-+...... ....+.....|+.|++.. ..+|+.|+.+ +.++||...
T Consensus 128 klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~ 207 (361)
T KOG2445|consen 128 KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN 207 (361)
T ss_pred EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec
Confidence 899999999999999876432211 111355667777777542 2345455433 244444332
Q ss_pred CCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC----CCEEEEEeCCeEEE
Q 002471 755 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS----GELLASVSEDSVRV 830 (918)
Q Consensus 755 ~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd----g~~Las~s~d~I~i 830 (918)
.. .+....+.++.+|..+|+.|+|.|+ ..+|++++.|.|+|
T Consensus 208 e~-----------------------------------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I 252 (361)
T KOG2445|consen 208 EN-----------------------------------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRI 252 (361)
T ss_pred CC-----------------------------------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEE
Confidence 21 1112334556789999999999994 34788888889999
Q ss_pred EECCCC-----------------CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 831 WTVGSG-----------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 831 wdl~s~-----------------~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
|.++.. -..+.+..+..|.+.|..+.|.-.|..|.+.|.||+|++|...
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 998731 1234567788999999999999999999999999999999754
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=175.52 Aligned_cols=267 Identities=16% Similarity=0.291 Sum_probs=188.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCCce-eEEeccCC-CCe
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHS-ASV 726 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~-~~V 726 (918)
..+|++...|.|+|||..++..+..|+++...+..++|.. ....+.+|+.||+|++||++...+. ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5789999999999999999999999999999999999987 4568999999999999999975443 33445555 345
Q ss_pred eEEEEcCCCCeEEEEEeC----CCcEEEEEcCCCee-eEEe----ecCceEEEEecCCC-EEEEEEcCCeEEEEECCCce
Q 002471 727 MSLDFHPNKDDLICSCDG----DGEIRYWSINNGSC-TRVF----KGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQA 796 (918)
Q Consensus 727 ~sl~fsp~~~~ll~sgs~----Dg~I~iwdl~~~~~-~~~~----~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~ 796 (918)
.|++..-. ..++++|.. |-.|.+||++.... ++.+ ...+++++|+|... .+++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 55555433 457766543 67899999998765 4443 45789999999874 56677789999999998652
Q ss_pred ---EEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEec---------cCCCceEEEEEeCCCC
Q 002471 797 ---CRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELS---------CNGNKFHSCVFHPTYP 862 (918)
Q Consensus 797 ---~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~---------~~~~~i~~i~~sp~g~ 862 (918)
.+...-.|...|.++.|..++. .|.+-+.. +..+|+++.+.....+..-. .....+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 2223334778899999998872 45555555 99999998774221111000 0011222223333445
Q ss_pred EEEEEEc-CCeEEEEECC---CCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGC-YQSLELWNMS---ENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~-dg~I~vwd~~---~~~~~----~~~-~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+++++. .++..++-+. ++... .+. +|...|+++.|.-.+.++.||++||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 5555555 5555555433 33222 344 4788899999999999999999999999996
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-17 Score=186.71 Aligned_cols=280 Identities=15% Similarity=0.219 Sum_probs=208.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccC---CCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h---~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
....-..+.|+|-...++++...-.|+|||.+.++.+..|..+ ...|+.+.+-. |..+|++|+.||.||||+-..
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3345677889998889999987889999999999988888754 45789998876 556899999999999997543
Q ss_pred CC----ceeEEecc-------CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce----EEEE-ecCC
Q 002471 712 PG----YSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----QMRF-QPHL 775 (918)
Q Consensus 712 ~~----~~~~~~~~-------h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~----~v~~-sp~~ 775 (918)
.. +.+..+.+ ..+.=.-++|.-..++|+++| +-..|+|||.....++..+..+.. .+.. ...+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 22 22222221 111113367877777777555 478999999999888877754332 2222 2346
Q ss_pred CEEEEEEcCCeEEEEECCCce---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccC
Q 002471 776 GRYLAAAAENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~---~~~~l~~h~~~--V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
+.+++|..||.|++||.+... .+...+.|... |..+.+-+.|- .|++|+.+ .|++||++.......+......
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 788899999999999998753 46666778877 99999998776 48888888 9999999985222222222211
Q ss_pred --CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-------cCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 849 --GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 849 --~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~-------h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++..+++..|+..+.+++|+. +.|+||++.......++. ..+.+.|++|+|..-+||+|+.|.+|.||.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999999999888 999999998776553333 345789999999999999999999999983
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-16 Score=175.88 Aligned_cols=263 Identities=12% Similarity=0.195 Sum_probs=181.9
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCCce--eEEeccCCCCe
Q 002471 653 LATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYS--LRTFMGHSASV 726 (918)
Q Consensus 653 Latgs~Dg~V~iwd~~~-~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~--~~~~~~h~~~V 726 (918)
+++...|+.|++||+.+ ++ .+..+. +.+....++++|++++|++++. ++.|.+|+++..+.. +... ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCc
Confidence 34446789999999963 33 444454 3456788999999999877754 888999999742322 2222 233456
Q ss_pred eEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEeec--CceEEEEecCCCEEEEEEc-CCeEEEEECCCceEEE
Q 002471 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL 799 (918)
Q Consensus 727 ~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~--~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~ 799 (918)
..|+|+|+++.++++...++.|.+|++.+. +.+..+.+ +...+.++|++++++++.. ++.|.+||+++...+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 789999999888877777999999999743 22233322 3466789999998877665 6899999998633221
Q ss_pred -------EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCcceEEEeccC------CCceEEEEEeCCCCE
Q 002471 800 -------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPS 863 (918)
Q Consensus 800 -------~l~~h~~~V~si~~spdg~~Las~s~-d-~I~iwdl~s~-~~~~~i~~~~~~------~~~i~~i~~sp~g~~ 863 (918)
.+. .......+.|+|+|++|+++.. + +|.+||+... ...+.+..+... ......+.++|++++
T Consensus 163 ~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 2344678999999999988876 3 9999999742 122333333221 112346889999999
Q ss_pred EEEEEc-CCeEEEEECCCCc-EEEEccc---CCCeEEEEEeCCCCEEEEEec-CCcEEEeC
Q 002471 864 LLVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK 918 (918)
Q Consensus 864 l~s~s~-dg~I~vwd~~~~~-~~~~~~h---~~~V~~la~spdg~~Lasgs~-Dg~I~IWd 918 (918)
++++.. ++.|.+|++.... ...+.++ ....+.++|+|+|++|++++. +++|.||+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 999865 6799999986543 2222222 235668999999999998775 89999984
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=165.70 Aligned_cols=216 Identities=21% Similarity=0.346 Sum_probs=168.8
Q ss_pred cCccceeeeeee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eeEec-----cCCCCeEEEEECC--CCCE
Q 002471 624 QGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP--SMPR 694 (918)
Q Consensus 624 ~~~s~~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~-~~~l~-----~h~~~V~~l~fsp--dg~~ 694 (918)
...+++.+..|. .+-+.|.||.|.|++..||+-. |..|.+|+++.... +..+. +|....++-+|+| +++.
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 344677888887 6778999999999999998876 88999999986655 33332 3566788889999 7777
Q ss_pred EEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecC
Q 002471 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 774 (918)
Q Consensus 695 Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~ 774 (918)
+++.+ |+++..||+++..+....-..|...|.++.|+|+..++|++|++||.|+|||.+.-+
T Consensus 187 v~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk----------------- 248 (370)
T KOG1007|consen 187 VATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK----------------- 248 (370)
T ss_pred EEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----------------
Confidence 77766 889999999986655566668999999999999999999999999999999988543
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCC---------------
Q 002471 775 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGS--------------- 837 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~--------------- 837 (918)
.++.++.+|...|.+|.|+|... +|++++.| .|.+|...+-.
T Consensus 249 ---------------------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e 307 (370)
T KOG1007|consen 249 ---------------------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE 307 (370)
T ss_pred ---------------------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCc
Confidence 34556677888899999998655 77788888 88888654321
Q ss_pred ------C-----cceEEEeccCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECC
Q 002471 838 ------E-----GECVHELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMS 879 (918)
Q Consensus 838 ------~-----~~~i~~~~~~~~~i~~i~~sp~g~~l~-s~s~dg~I~vwd~~ 879 (918)
+ ...+..+..|+..|++++|+...++++ +-+.||.|.|=.+.
T Consensus 308 ~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 308 DEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred chhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0 123446778899999999999888755 55778888776654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-17 Score=170.55 Aligned_cols=210 Identities=16% Similarity=0.295 Sum_probs=174.5
Q ss_pred eeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCC------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC
Q 002471 673 KTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745 (918)
Q Consensus 673 ~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 745 (918)
.-.+.+|.+.|.+++|+| +...||+||+|.+|.||.+...+ .++..+.+|...|--+.|+|.-.++|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345679999999999999 66789999999999999997533 45788999999999999999988999999999
Q ss_pred CcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC-eEEEEEcCCCCEEEE
Q 002471 746 GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLAS 822 (918)
Q Consensus 746 g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~-V~si~~spdg~~Las 822 (918)
.+|.+||+.+++.+-.+. .-+.++.|+.+|..+++++.|..|+|||.++++.+.+-.+|.+. -..+.|..+|.++.+
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 999999999998777665 34677899999999999999999999999999999988778653 445668888986666
Q ss_pred EeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcE
Q 002471 823 VSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKT 883 (918)
Q Consensus 823 ~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~vwd~~~~~~ 883 (918)
|... .+-+||-...++...+.++.. .+.|.---|.+|...|+.++ .|+.|+.|.+.....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 6533 699999988777766666665 45566667888888877665 578999999987763
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-16 Score=171.62 Aligned_cols=249 Identities=14% Similarity=0.175 Sum_probs=175.6
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEEECC-CCce--eeEeccCCCCeEEEEECCCCCEEEEEeC-C
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFSPSMPRLATSSF-D 701 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs-~Dg~V~iwd~~-~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~-D 701 (918)
.++.+..+.. .+....++++|++++|++++ .++.|.+|+++ +++. +.... .......++|+|++++|++++. +
T Consensus 24 ~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~ 101 (330)
T PRK11028 24 ALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNA 101 (330)
T ss_pred ceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCC
Confidence 4455666653 46678899999999987765 47899999987 3332 22222 3345778999999999988875 8
Q ss_pred CeEEEEeCCCCCce---eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-------Ee--ecCceEE
Q 002471 702 KTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-------VF--KGGTAQM 769 (918)
Q Consensus 702 g~V~Iwdl~~~~~~---~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-------~~--~~~~~~v 769 (918)
+.|.+|++++.+.. +..+. +...+.+++|+|+++.++++...++.|++||+++...+. .. ..+...+
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~ 180 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM 180 (330)
T ss_pred CeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceE
Confidence 89999999753322 22222 334467789999999888888888999999998643221 11 1234678
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCC--c--eEEEEecCC------CCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002471 770 RFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 836 (918)
Q Consensus 770 ~~sp~~~~ll~~~~-dg~I~i~D~~t--~--~~~~~l~~h------~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~ 836 (918)
.|+|++.+++++.. ++.|.+||+.. + +.+..+..+ ......+.|+|++++|+++... .|.+|++...
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 99999999988876 89999999873 3 333333221 1223468899999988888654 8999999654
Q ss_pred C-CcceEEEeccCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 002471 837 S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 879 (918)
Q Consensus 837 ~-~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~-dg~I~vwd~~ 879 (918)
. ..+.+..... ......+.++|+|++|+++.. +++|.+|++.
T Consensus 261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 3 2233333332 234567899999999998886 7899999874
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=169.94 Aligned_cols=240 Identities=20% Similarity=0.327 Sum_probs=180.7
Q ss_pred cCCCCeEEEEEccCC----CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCC
Q 002471 636 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 636 ~H~~~V~~l~fspdg----~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~ 710 (918)
.|....+.|+|+-|. .+||+|+.-|.|+|.|+.++++...+.+|...|+.|.|+|+. .+|+++|.|..||+|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 466677788887643 489999999999999999999999999999999999999964 688999999999999999
Q ss_pred CCCceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---------------ec--------
Q 002471 711 NPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---------------KG-------- 764 (918)
Q Consensus 711 ~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---------------~~-------- 764 (918)
+ ..++..|- +|.+.|.++.|+.++. .|++|+.|..|++|++...+....+ ..
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 77777664 6999999999999988 4559999999999999843211111 00
Q ss_pred --------CceEEEEecCCCEEEEEEcCCeEEEEECC-Cce-------------EEEEecCCCCCeEEE--EEcCCCCEE
Q 002471 765 --------GTAQMRFQPHLGRYLAAAAENVVSILDAE-TQA-------------CRLSLQGHTKPIDSV--CWDPSGELL 820 (918)
Q Consensus 765 --------~~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~-------------~~~~l~~h~~~V~si--~~spdg~~L 820 (918)
.+.|+.| -++++++-+.++.|..|... -.+ .+.++.-....|.-| +|++-.++|
T Consensus 245 st~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 0011111 13567777889999999762 111 222333333344444 556677899
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEE-eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHE-LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~-~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
|.|... .|.+||++..+...+... .......|...+|+.|+..|+..+.|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999988 999999998765433222 22335678999999999999999999999999864
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-16 Score=183.22 Aligned_cols=292 Identities=18% Similarity=0.224 Sum_probs=208.7
Q ss_pred cceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCC-------CceeeEeccCCCCeEEEEECCCCCEEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~iwd~~~-------~~~~~~l~~h~~~V~~l~fspdg~~Lasg 698 (918)
....+..+..|...|..++.+++. .+|++||.||+|+|||+.. .+...++......+.++.+.+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 556888899999999999998755 9999999999999999763 23334444467889999999999999999
Q ss_pred eCCCeEEEEeCCCCCc------eeEEeccC-CCCe-eEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEee-----c
Q 002471 699 SFDKTVRVWDADNPGY------SLRTFMGH-SASV-MSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK-----G 764 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~------~~~~~~~h-~~~V-~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~ 764 (918)
+.||.|++.+++.... ..+....+ .+.| ..-+|..... .+++.+...+.|..||++.......++ |
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999975111 11222222 2233 3334443333 366677888999999999876555443 4
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec-CCCCCeEEEEEcCCC---CEEEEEeC-C--eEEEEECCCCC
Q 002471 765 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSG---ELLASVSE-D--SVRVWTVGSGS 837 (918)
Q Consensus 765 ~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~h~~~V~si~~spdg---~~Las~s~-d--~I~iwdl~s~~ 837 (918)
-+++++.+|.+.+++.|...|.+.+||++-+.++.... .+..+|+.++.+|-. ...++++. . .|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 57889999999999999999999999999888877665 255778888877733 35555544 3 89999999873
Q ss_pred CcceEEEe----------c------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----------------
Q 002471 838 EGECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----------------- 884 (918)
Q Consensus 838 ~~~~i~~~----------~------~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~----------------- 884 (918)
....+..- . .+......+++...+..+++|+.|..|+.||....+..
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchh
Confidence 22222111 0 11112334455566778999999999999997542111
Q ss_pred ----------------------------------------EEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 002471 885 ----------------------------------------TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 ----------------------------------------~~~~h~~~V~~la~spd-g~~Lasgs~Dg~I~IWd 918 (918)
.-..|...|+++++... -.+|++++.||.|+||+
T Consensus 1357 ~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1357 YDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00116677888877543 45899999999999996
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.8e-18 Score=183.54 Aligned_cols=241 Identities=22% Similarity=0.297 Sum_probs=177.8
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC
Q 002471 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745 (918)
Q Consensus 673 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~-------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 745 (918)
..++..|...|+.+.|.+-...|++++.||+|.+|++.. .-+++.+|.+|.++|.|+++.+++..++ +|+.|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y-sgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY-SGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE-eeccC
Confidence 346778999999999999999999999999999999932 1256789999999999999999877655 99999
Q ss_pred CcEEEEEcCCC----------eeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC--CCCCeEE
Q 002471 746 GEIRYWSINNG----------SCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--HTKPIDS 810 (918)
Q Consensus 746 g~I~iwdl~~~----------~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h~~~V~s 810 (918)
|+|+.|++... .....+.++ +..+.++....+|+.++.||+|++|+...... .++.. ..+.-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99999966521 112233333 34567888888999999999999999876655 22222 1222344
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEecc-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 811 VCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 811 i~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~-------~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
+.|......+...+.. .--++++... ..+..+.. ....+..+.++|...+.+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~---s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVV---SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhh---hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 4444322111111111 2223333322 12222211 1234778899999999999999999999999999
Q ss_pred cEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 882 KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 ~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+++ ...+|...|+++++.|+|.+|+++++||.|++|+
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 988 8889999999999999999999999999999996
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=161.16 Aligned_cols=239 Identities=20% Similarity=0.371 Sum_probs=178.2
Q ss_pred ecCCCCeEEEEEccCC-----CEEEEEeCCCcEEEEECCCCceee----Ee-----ccCCCCeEEEEECC-CCCEEEEEe
Q 002471 635 RASTSKVICCHFSSDG-----KLLATGGHDKKAVLWHTDTLKSKT----NL-----EEHSSLITDVRFSP-SMPRLATSS 699 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg-----~~Latgs~Dg~V~iwd~~~~~~~~----~l-----~~h~~~V~~l~fsp-dg~~Lasgs 699 (918)
..|.-+++.+-|.|+. .+|||++ ..+|||.+...+... .+ ..+..++++..|+. +-++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4688899999999976 3666654 479999987422111 11 24678899999988 677899999
Q ss_pred CCCeEEEEeCCCC--CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-ec-----CceEEEE
Q 002471 700 FDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-----GTAQMRF 771 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~--~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~-----~~~~v~~ 771 (918)
-|-+..|||++++ +.....+..|...|..|+|...+..+|++++.||.||+||++..+.-..+ +. ....++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999983 23456778899999999999998999999999999999999987544333 22 2345677
Q ss_pred ecCCCEEEEE-Ec-CCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCC---cceEE
Q 002471 772 QPHLGRYLAA-AA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSE---GECVH 843 (918)
Q Consensus 772 sp~~~~ll~~-~~-dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~---~~~i~ 843 (918)
++.+.++++. .. ...|.|.|++.. .++.++.+|...|+.|+|.|... .|+++++| .+.|||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 7766555543 33 458999999976 67889999999999999999554 89999999 899999975422 12222
Q ss_pred EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 844 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
.+. .+..|..+.|++...--+..+.++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 233 46789999999755444444445555443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=161.42 Aligned_cols=231 Identities=19% Similarity=0.315 Sum_probs=181.1
Q ss_pred CCCeEEEEEc-------cCCCEEEEEeCCCcEEEEECCCCceeeEecc--CC---CCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 638 TSKVICCHFS-------SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HS---SLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 638 ~~~V~~l~fs-------pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~--h~---~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
...|+..+|- |+..++|+.+.|.-|.+||.-+++....+++ |- ....+|+|+|||..|++|- ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 3457777775 5778999999999999999999998888774 33 3457899999999998765 67899
Q ss_pred EEeCCCCCceeE--Eec-----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCC
Q 002471 706 VWDADNPGYSLR--TFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHL 775 (918)
Q Consensus 706 Iwdl~~~~~~~~--~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~ 775 (918)
|||+..++.... ... +..+-|.+++|+|....+++.++....+-||.-.....+..+ .++++.++|.+++
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 999965453322 222 236779999999998888889999999999988887776665 4578999999999
Q ss_pred CEEEEEEc-CCeEEEEECCCc-eEEEEecCCCC-CeEE--EEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002471 776 GRYLAAAA-ENVVSILDAETQ-ACRLSLQGHTK-PIDS--VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 849 (918)
Q Consensus 776 ~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~h~~-~V~s--i~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 849 (918)
++|++|+. +..|.+||++.. .++..+..|.. .--. ....|++++|++|+.+ .|++||+.+.. ..+..+..+.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~s 340 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYS 340 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Cccccccccc
Confidence 99999987 789999999964 56677776655 2223 3456889999999888 99999998732 3455666677
Q ss_pred CceEEEEEeCCCCEEEEEEcCC
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg 871 (918)
..+..++++|--..+++++...
T Consensus 341 d~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccccceecCcccceeeeccCce
Confidence 8899999999988777776543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=155.49 Aligned_cols=227 Identities=19% Similarity=0.262 Sum_probs=172.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCC---------CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002471 682 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd 752 (918)
.|..-+|+|.+++|++|+.+|.|.|+.+.+ ++..+..+.+|.++|+.++|+. .++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 466678999999999999999999998863 2344566789999999999993 3454666 69999998
Q ss_pred cCCCee----eEE------e------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC
Q 002471 753 INNGSC----TRV------F------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 816 (918)
Q Consensus 753 l~~~~~----~~~------~------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd 816 (918)
.+.... .+. + -..++.+...|..+.++.++.|+.++.||+++++..+++++|.+.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 865422 100 0 124567888999999999999999999999999999999999999999998555
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCcceEEEecc-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc
Q 002471 817 GELLASVSED-SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 888 (918)
Q Consensus 817 g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-------~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~ 888 (918)
..-+++|++| ++||||.++.+....+...+. .+..|.+++.+ ..++++ +....+.+|+++..++..+..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvC-GgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVC-GGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEe-cCCCceeEEeccCCCceEEEe
Confidence 5678889999 999999999854444433221 12345555554 345554 445689999999999998888
Q ss_pred cCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 889 HEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 889 h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
....|..+.|..| .+++++..+.|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 8888999999766 56677765555544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=167.59 Aligned_cols=200 Identities=19% Similarity=0.315 Sum_probs=160.0
Q ss_pred eeeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCC-CCEEEEEeCCC
Q 002471 632 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPS-MPRLATSSFDK 702 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~-------~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg 702 (918)
-.+.+|+++|..++|+| +...||+||.|.+|.||.+... +.+..+.+|...|--|.|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35679999999999999 5579999999999999998632 457788999999999999995 55789999999
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceEEEEecCCCEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRY 778 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~l 778 (918)
+|.||++.+ +..+.++. |.+-|++++|+.+|. ++++.+.|..|||||.++++.+..-.++ ...+.|..++. +
T Consensus 155 ~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999998 55555566 999999999999976 5669999999999999999988776432 34566777777 5
Q ss_pred EEEEc----CCeEEEEECCCceE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002471 779 LAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 836 (918)
Q Consensus 779 l~~~~----dg~I~i~D~~t~~~---~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~ 836 (918)
++.+. +..+.+||....+. ..++. ....|.---|++|.++|+.++.+ .||.|.+...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 55443 67899998776432 22222 44567777789999987777755 8999999764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.8e-16 Score=151.28 Aligned_cols=268 Identities=16% Similarity=0.230 Sum_probs=191.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCC----------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
..|.+-+|+|.+++|++|..+|.|.++.+.+ ...+..+.+|.++|..++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3477788999999999999999999998752 12345567999999999998 34677766 59999998
Q ss_pred CCCCCcee------EE-e-----ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceE---EEEec
Q 002471 709 ADNPGYSL------RT-F-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQP 773 (918)
Q Consensus 709 l~~~~~~~------~~-~-----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~sp 773 (918)
.+...+.. +. . .-.--.|+++...|..+.+|.+ +.|+.++.||+++|+..++++++... +....
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A-gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA-GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe-cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 76422210 00 0 0122458899999988877744 47999999999999999999987643 44445
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCC----------CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRLSLQGHT----------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 843 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~----------~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~ 843 (918)
..+.+++|+.||+++|||.++++++..+...+ ..|.+++. +..+|++|+.-.+.+|.+++.+. .++.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~-t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSES-TCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCc-eEEE
Confidence 66889999999999999999999988875421 23555554 46788888777999999988632 3333
Q ss_pred EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 002471 844 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spd-g~~Lasgs~Dg~I~IWd 918 (918)
.+ ...+..+.|..+ .+++++..+.|.-|.+..--...+.......++..|+-. -++|-.++..+++.|++
T Consensus 244 pi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 244 PI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ec---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 33 456777777544 578888888999998765444444444444455555322 34566677777787763
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-16 Score=176.65 Aligned_cols=257 Identities=17% Similarity=0.275 Sum_probs=185.7
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCce-----eEEeccCCCCeeEEEEcC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHP 733 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~-----~~~~~~h~~~V~sl~fsp 733 (918)
+.+.||+++........-.-...|+|++|+| +..+||.|+.+|.|.+||++..... ......|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999986533333334567899999999 5667888889999999999875542 123346899999999976
Q ss_pred CCCe-EEEEEeCCCcEEEEEcCCCeee------EE---------eecCceEEEEecCC-CEEEEEEcCCeEEEEECCCc-
Q 002471 734 NKDD-LICSCDGDGEIRYWSINNGSCT------RV---------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQ- 795 (918)
Q Consensus 734 ~~~~-ll~sgs~Dg~I~iwdl~~~~~~------~~---------~~~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~- 795 (918)
+... =|++++.||.|+.|+++.-... .. -...+..+.|.+.. ..|++|+.+|.|..-+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5333 2448888999999998754321 00 01245667787765 56888888898877433222
Q ss_pred -------eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE-EEE
Q 002471 796 -------ACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LLV 866 (918)
Q Consensus 796 -------~~~~~l~~h~~~V~si~~spdg~-~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~-l~s 866 (918)
+....+..|.++|+++.++|-+. +|.++++.+|+||.... ....+..+..+...+++++|+|.... |++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 12334556889999999999777 45555533999999762 22556666666777999999998765 555
Q ss_pred EEcCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 867 IGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 867 ~s~dg~I~vwd~~~~~~~---~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+..||.|.|||+...... ....+....+.+.|+++|++|+.|...|.|++|+
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 566999999999765433 4444566777888899999999999999999985
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=178.43 Aligned_cols=237 Identities=20% Similarity=0.294 Sum_probs=166.5
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECC--CCCEEEEEeCCCeE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKTV 704 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~V 704 (918)
+.....|.||++.|+|++|+.||.+|++|+.|-.|.|||.-..+.+..+. +|...|.|++|-| +++.|++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 44567789999999999999999999999999999999988777777765 8999999999999 56789999999999
Q ss_pred EEEeCCC---------CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-Eee-----------
Q 002471 705 RVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFK----------- 763 (918)
Q Consensus 705 ~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~----------- 763 (918)
++||+.. .....+.+..|...|..|+..|++.+.|.++++||+|+-+|++...... ...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985 2344567778999999999999998999999999999999998743211 110
Q ss_pred -cCceEEEEecCCCE-EEEEEcCCeEEEEECCCceEEEEecC-----CCCCeEEEE-EcCCCCEEEEEeCCeEEEEECCC
Q 002471 764 -GGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQG-----HTKPIDSVC-WDPSGELLASVSEDSVRVWTVGS 835 (918)
Q Consensus 764 -~~~~~v~~sp~~~~-ll~~~~dg~I~i~D~~t~~~~~~l~~-----h~~~V~si~-~spdg~~Las~s~d~I~iwdl~s 835 (918)
....++.++|...+ |++|+.|-..++||.+.......-.+ ......|+. |+|.+- ...+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~--------- 266 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQ--------- 266 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcc---------
Confidence 13355667776644 44455566777777543211100000 000111111 111110 0000
Q ss_pred CCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 836 ~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
+ .+......++-+.|+|+|..|++.-....|++||+..++..
T Consensus 267 g-------n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 267 G-------NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred c-------ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0 00000122456789999999999888889999999887754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-16 Score=171.25 Aligned_cols=237 Identities=15% Similarity=0.235 Sum_probs=175.5
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
..++++|.+.|+|++|+.||+++|+|+.|+.|.||.-. ....++ .|.+.|.|+.|+|-...|++++... .-+|..
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~ 121 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSP 121 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEeecCchHHHhhhcchhh-ccccCh
Confidence 45688999999999999999999999999999999754 222232 5999999999999999999998643 778987
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----cCceEEEEecCCC-----EEE
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-----RYL 779 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~-----~ll 779 (918)
+. + .+...+ ....|.+.+|..||.+ ++.|-.||+|.|-+....+.++.-. ..+-.++|+|..+ .+.
T Consensus 122 ~q-K-~V~K~k-ss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQ-K-SVSKHK-SSSRIICCSWTNDGQY-LALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hh-h-hHHhhh-hheeEEEeeecCCCcE-EEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 75 2 222211 3456888999998764 5589999999998766554444332 2456788888653 455
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
+.....++.+|.+.. +.+..-+.-.-.-.|+.+.++|++++.|+.| .+++|.-+ | ..+.++.....+|+++..+
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 555566666666543 2222222223345688999999999998888 88888643 2 4555555567899999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCC
Q 002471 859 PTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~vwd~~~ 880 (918)
|++.++++|+.||+|..|++-.
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCceEEEEEccCeeehhhhHH
Confidence 9999999999999999998743
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.9e-16 Score=155.25 Aligned_cols=251 Identities=19% Similarity=0.264 Sum_probs=188.4
Q ss_pred eeeeeeecCCCCeEEEEEcc---CCCEEEEEeC----CCcEEEEECC--CCceeeEe-ccCCCCeEEEEECCCCC-----
Q 002471 629 KEANSVRASTSKVICCHFSS---DGKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP----- 693 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fsp---dg~~Latgs~----Dg~V~iwd~~--~~~~~~~l-~~h~~~V~~l~fspdg~----- 693 (918)
+++..+..+ -.++++.|+. ...+||.|+. .++|.|..++ +++.+..- ..|..+++.+-|.|+..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 445555544 3688899984 3358888873 4667776554 44443332 36889999999999763
Q ss_pred EEEEEeCCCeEEEEeCCCCCcee--------EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC
Q 002471 694 RLATSSFDKTVRVWDADNPGYSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 765 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~ 765 (918)
+|||++ -.+|+|.+......+ ..-..+..+++++.|+.-..++|.+++-|-++.|||++++..
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------- 185 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------- 185 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-------
Confidence 455554 459999997422211 112246788999999998888999999999999999987621
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEE
Q 002471 766 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVH 843 (918)
Q Consensus 766 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~ 843 (918)
+.....+-.|...|..|+|...+. +|++++.| .||+||++..+....++
T Consensus 186 -----------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 186 -----------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred -----------------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence 112234556999999999998665 89999988 99999999987777777
Q ss_pred EeccCCCceEEEEEeCCC-CEEEEEEcCC-eEEEEECCCCcEE--EEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 002471 844 ELSCNGNKFHSCVFHPTY-PSLLVIGCYQ-SLELWNMSENKTM--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g-~~l~s~s~dg-~I~vwd~~~~~~~--~~~~h~~~V~~la~spd-g~~Lasgs~Dg~I~IWd 918 (918)
+-.....+...++|++.. +++++...|. .|.|.|++..... ++.+|.+.|+.++|.|. ...|+||++|..+.|||
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 766667788899998855 5666666664 8999999876543 88999999999999995 45899999999999997
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=161.20 Aligned_cols=253 Identities=16% Similarity=0.205 Sum_probs=185.1
Q ss_pred cceeeeeeecCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCceeeE--eccCC-CCeEEEEECCCCCEEEEEeC-
Q 002471 627 SFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHS-SLITDVRFSPSMPRLATSSF- 700 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~V~iwd~~~~~~~~~--l~~h~-~~V~~l~fspdg~~Lasgs~- 700 (918)
+.+.+..+++|...++.++|.. .+..+.+|+.||+|++||++....... +..+. .+..|++....+..+++|..
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~ 138 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL 138 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc
Confidence 4566777888888899999987 467899999999999999986655444 44555 56778888778888888854
Q ss_pred ---CCeEEEEeCCCCCceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe----eeEEee--cCceEEE
Q 002471 701 ---DKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRVFK--GGTAQMR 770 (918)
Q Consensus 701 ---Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~----~~~~~~--~~~~~v~ 770 (918)
|-.|.+||++.....++ ....|.+.|++|+|+|...++|++|+.||.|.|||++... ++.++. ..+..+.
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig 218 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG 218 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence 67899999998666454 4457999999999999999999999999999999998653 223333 2356677
Q ss_pred EecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCC------------CCeEEEEEcC-CCCEEEEEeCC--eEEEEEC-
Q 002471 771 FQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDP-SGELLASVSED--SVRVWTV- 833 (918)
Q Consensus 771 ~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------------~~V~si~~sp-dg~~Las~s~d--~I~iwdl- 833 (918)
|..++ +++.+.+...+..+|+++.+.+...+.... ..+... .+| +..+++.++.+ +..++-+
T Consensus 219 w~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 219 WLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred eecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEee
Confidence 87765 578888999999999999887655443211 111111 223 34455555543 4444433
Q ss_pred --CCCCCcceEEEecc-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 834 --GSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 834 --~s~~~~~~i~~~~~-~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
.++.....+..+.+ |...|+++.|.-.+..+++||+||.+.+|....
T Consensus 298 ~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 298 DTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 44444455555555 556688889998999999999999999998643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-16 Score=167.37 Aligned_cols=260 Identities=17% Similarity=0.273 Sum_probs=189.6
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEE-CC-------CCCEEEEEeCCCeEEEE
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SP-------SMPRLATSSFDKTVRVW 707 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~f-sp-------dg~~Lasgs~Dg~V~Iw 707 (918)
.|...|.||.|+.....+.+++ |..+.+|.-.+......+.-....|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5777788999998887777665 555555543322222222222222221111 11 23478888999999988
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--eeeEEeecCceEEEEecCCCEEEEEEcCC
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRVFKGGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~--~~~~~~~~~~~~v~~sp~~~~ll~~~~dg 785 (918)
+-. ++.-+.+..|.+.|.+-.|+|+|..++ ++++||.|++|.-... ..+..+...+.|++|.|+.+.++.+. .+
T Consensus 91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 754 556677889999999999999998877 9999999999985421 12333456789999999988777654 45
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
.+.|--+.-...+...+.|++-|.++.|++..+++++|++| ..+|||--. ..+..-..|+.+|++++|.|+ +.+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cce
Confidence 66676776666777788999999999999999999999999 999999643 556666778999999999999 444
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 865 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
++++ .+++++ .....+.|..++|++||..++.|+..|.|.+
T Consensus 242 ~v~S-~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 242 LLWS-YNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeee-eeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 4444 344442 2234578999999999999999998887753
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-15 Score=169.76 Aligned_cols=279 Identities=17% Similarity=0.295 Sum_probs=207.7
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.|.-.++|.++||.++++|+|..||.|.||.-- .......++-|...|.+++|+++|.+|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 467779999999999999999999999999632 2234566788999999999999999999999999999999998
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--------------cCceEEEEecCCCE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLGR 777 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------------~~~~~v~~sp~~~~ 777 (918)
++ ...+..-.++|..+.++||++.+. .+..|+.|.+....+.....++. +-...++++|.-+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 54 445556778999999999987555 66679999998875544333222 12345788898888
Q ss_pred EEEEEcCCeEEEEECCCceEEEEecC-----------CCCCeEEEEEcCCCCEEEEEe---------C-C-eEEEEECCC
Q 002471 778 YLAAAAENVVSILDAETQACRLSLQG-----------HTKPIDSVCWDPSGELLASVS---------E-D-SVRVWTVGS 835 (918)
Q Consensus 778 ll~~~~dg~I~i~D~~t~~~~~~l~~-----------h~~~V~si~~spdg~~Las~s---------~-d-~I~iwdl~s 835 (918)
++..+..+.|.+||+-+.+.++.+.. +...|+.++.+-.|.++++.- + . .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 99999999999999988776655431 123467777888899988864 1 1 689998765
Q ss_pred CCCcceE--EEeccCCCceEEEEE-eCCCC-EEEEEEcCCeEEEEECCCCc----------EE-EEcccCCCeEEEEEeC
Q 002471 836 GSEGECV--HELSCNGNKFHSCVF-HPTYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVST 900 (918)
Q Consensus 836 ~~~~~~i--~~~~~~~~~i~~i~~-sp~g~-~l~s~s~dg~I~vwd~~~~~----------~~-~~~~h~~~V~~la~sp 900 (918)
....-.+ .....|+..+...++ ++... .+++++.||.++||-+.+.+ +. .-.-|..++++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 5332222 223455555544444 44443 78999999999999883322 11 1113788999999999
Q ss_pred CCCEEEEEecCCcEEEeC
Q 002471 901 ETGYVASASHDKFVKLWK 918 (918)
Q Consensus 901 dg~~Lasgs~Dg~I~IWd 918 (918)
||..| +++.|++|.|||
T Consensus 520 dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCcEE-EEecCCEEEEec
Confidence 99654 567888999997
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-14 Score=149.15 Aligned_cols=231 Identities=16% Similarity=0.288 Sum_probs=172.1
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEeCCCCCce
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 715 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~Iwdl~~~~~~ 715 (918)
...|..+.|..|...|..|+.|| .++|..+..............|..+-|+. .+||..+.+ +.+++++++. +..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk-~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKK-KTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEccc-Cce
Confidence 45677888999999999999887 67788776554333333444566666664 466666554 4589999886 333
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceEEEEecCC--CEEEEEEc--CCeE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV 787 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~--~~ll~~~~--dg~I 787 (918)
+..+. ....|.++.++.+ +++ ++-. ..|+|||+++.+.++++... ...+++++.. .+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 33332 5678999999854 455 4443 44999999999988877532 2234455444 45555333 6899
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccC--CCceEEEEEeCCCCE
Q 002471 788 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS 863 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~--~~~i~~i~~sp~g~~ 863 (918)
.+||+.+-+.+..+..|++.+-+++|+++|.+||++++. -||||.+.++ ..+.+|+.. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999999999999999999999999999999999999998 6999999877 555555533 345889999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 002471 864 LLVIGCYQSLELWNMSE 880 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~ 880 (918)
|.+.+..++|+||.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998854
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=151.58 Aligned_cols=276 Identities=16% Similarity=0.258 Sum_probs=190.9
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCCce
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
+-.+..++|++.-..+|++..|-.|++||-.. ++...++. ....|+|++|-|. ++.|++|+..| |.||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34578899999877889999999999999766 55555553 3467999999995 55788888666 999988643221
Q ss_pred -------------eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEE
Q 002471 716 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 779 (918)
Q Consensus 716 -------------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll 779 (918)
+....+| .+|+++.|.+||..++-++-.|..|.|||..++.++... .+++.-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1222344 689999999998877755556889999999999876654 24667899999999999
Q ss_pred EEEcCCeEEEE-ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCC------------cceEEEec
Q 002471 780 AAAAENVVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE------------GECVHELS 846 (918)
Q Consensus 780 ~~~~dg~I~i~-D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~------------~~~i~~~~ 846 (918)
++..|+..++| ..++..+..-..+ .+.|...+|+|+|++|+..+.+.-++|.+....+ ...+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 99999999999 4445444443333 3489999999999977666666444554422111 01111111
Q ss_pred ---------cCCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCcEEEEc--c--cCCCeEEEEEeC---CC
Q 002471 847 ---------CNGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET 902 (918)
Q Consensus 847 ---------~~~~~i~~i~~sp~g~~l~s~s~dg--------~I~vwd~~~~~~~~~~--~--h~~~V~~la~sp---dg 902 (918)
...+++.+++|.|.|.+|++.-..+ .|.+||.+....+.+. + .......|+|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1146788999999999999986543 4777887766555332 2 111244555554 45
Q ss_pred CEEEEEecCCcEEEe
Q 002471 903 GYVASASHDKFVKLW 917 (918)
Q Consensus 903 ~~Lasgs~Dg~I~IW 917 (918)
.+|..+=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 566666666766544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=172.96 Aligned_cols=244 Identities=20% Similarity=0.295 Sum_probs=186.2
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCce--eeE----eccCCCCeEEEEECCCCC--EEEEEeCCCeEEEE
Q 002471 637 STSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRFSPSMP--RLATSSFDKTVRVW 707 (918)
Q Consensus 637 H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~~~--~~~----l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iw 707 (918)
-...|.|++|+| +..+||.|+++|.|.+||+..+.. ... ...|..+|+.+.|..+.. .|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 356799999999 668889999999999999986554 222 236899999999987544 49999999999999
Q ss_pred eCCCCCceeE-----Eec------cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----------EEeecC
Q 002471 708 DADNPGYSLR-----TFM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----------RVFKGG 765 (918)
Q Consensus 708 dl~~~~~~~~-----~~~------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----------~~~~~~ 765 (918)
+++.-..+.. ... .....+++++|.+...+.++.|+++|.|..-+....+.. ....+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8875322111 111 223468999999988888889999999987433222111 112345
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceE
Q 002471 766 TAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECV 842 (918)
Q Consensus 766 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i 842 (918)
+..+.++|-...++.++.|.+|+||... ...++..+..+...|++++|+|... .|+++..+ .|.|||+..... ..+
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 6778899999888888889999999988 7788888888888899999999776 66667666 999999976533 334
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
.....+....+.+.|++.|+.|++|...|.|++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444444566777888989999999999999999999643
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=163.48 Aligned_cols=229 Identities=21% Similarity=0.364 Sum_probs=162.6
Q ss_pred CCCEEEE--EeCCCcEEEEECCC-CceeeE-ec--cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCC------ce
Q 002471 649 DGKLLAT--GGHDKKAVLWHTDT-LKSKTN-LE--EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YS 715 (918)
Q Consensus 649 dg~~Lat--gs~Dg~V~iwd~~~-~~~~~~-l~--~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~------~~ 715 (918)
+.+++|+ ++..|.|-||++.. |+.-.. +. .....|+++.|.| |...||++++||.|+||.+..++ .+
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 4455554 45678999999873 332221 11 2456799999999 78899999999999999997643 34
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
-..++.|...|++|.|+|--..+|++++.|-+|++||+.+.+..
T Consensus 670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~------------------------------------ 713 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY------------------------------------ 713 (1012)
T ss_pred ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh------------------------------------
Confidence 56788999999999999987788889999999998888765432
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc-CCCceEEEEEeCCCCEEEEEEcCC--
Q 002471 796 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ-- 871 (918)
Q Consensus 796 ~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~~i~~sp~g~~l~s~s~dg-- 871 (918)
..+.+|.+.|..++|+|||+.+++.+.| +|+||+-++++. .+.+-++ .+..-..|.|.-+|+++++.+.|.
T Consensus 714 ---~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 714 ---SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred ---heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 3456799999999999999999999999 999999987643 2333222 123445678888999999998875
Q ss_pred --eEEEEECCCCcE--E-EE-cccCCCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 002471 872 --SLELWNMSENKT--M-TL-TAHEGLIAALAVSTETG-YVASASHDKFVKLWK 918 (918)
Q Consensus 872 --~I~vwd~~~~~~--~-~~-~~h~~~V~~la~spdg~-~Lasgs~Dg~I~IWd 918 (918)
.|.+||..+-.. + +. ....-.+.--.+++|.. +|++|-.|..|.+|.
T Consensus 789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 789 ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 688888764331 1 11 01111111112344444 466677788887763
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.4e-15 Score=153.71 Aligned_cols=281 Identities=15% Similarity=0.199 Sum_probs=210.0
Q ss_pred ccEEEEcCCCeeeccCCC---eeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 557 ~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
..+.||.+|..+++++.. .||.++..-.++ +.|++..
T Consensus 60 NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------------~~KPI~~ 99 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------------TPKPIGV 99 (609)
T ss_pred ceeeeccCCeEEeecCCcceeeeechHHHHhhc----------------------------------------CCCCcee
Confidence 357788888888776544 677765432211 2233333
Q ss_pred ee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 634 VR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 634 l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
.. .|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||++
T Consensus 100 ~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 100 MEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred ccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence 33 4568999999999999999999999999999999887777753 34589999999999999999999999999998
Q ss_pred CCCcee--EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eE------Eeec---CceEEEEecCCCEE
Q 002471 711 NPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TR------VFKG---GTAQMRFQPHLGRY 778 (918)
Q Consensus 711 ~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~------~~~~---~~~~v~~sp~~~~l 778 (918)
.....+ ..+........++.|+|....||++.+..+.+-+||++.... +. .+.. .-..+.|++.|+.|
T Consensus 180 d~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 180 DRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred CCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCee
Confidence 643232 223345567788999999999999999999999999986532 11 1111 12457899999999
Q ss_pred EEEEcCCeEEEEECCCceEEEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-------------
Q 002471 779 LAAAAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------------- 837 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t~~~~~~l~~h~-------~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~------------- 837 (918)
++.-....-.+||+-+..+...-..|. ..|.+++|..|.. +++|+++ .|++|.+....
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~ 338 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEE 338 (609)
T ss_pred hhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchh
Confidence 988887778888988755433222232 3467788876544 8899999 99999985321
Q ss_pred -------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 838 -------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 838 -------~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
....+..+++|...+..+.|++....|++.+-.+.|+||.-
T Consensus 339 ~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 339 EMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 01234667889999999999999999999999999999954
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=149.44 Aligned_cols=225 Identities=16% Similarity=0.264 Sum_probs=173.5
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.++.-..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 3444567899999999999999999999999998763 5678899999999999999999999999999999999998
Q ss_pred CCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-------eeEEeecCceEEEEecCCCEEEE
Q 002471 710 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------CTRVFKGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 710 ~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-------~~~~~~~~~~~v~~sp~~~~ll~ 780 (918)
..++ ++...+..+...++++.|+|.++ .|++|+.-..|.||-++... ..+.++..+.++.|+|++-.+++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 5433 34556667899999999999965 56689988999998877543 22344567789999999999999
Q ss_pred EEcCCeEEEEEC-----CC-------------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 002471 781 AAAENVVSILDA-----ET-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 781 ~~~dg~I~i~D~-----~t-------------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~ 841 (918)
|+.|+..++|.. ++ |..+.++....+.|..+.|+|+|..|+-.+.| .|.+-|...... .
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--R 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--h
Confidence 999998888843 21 12333343456789999999999999999999 898888765532 1
Q ss_pred EEEeccCCCceEEEEEeCC
Q 002471 842 VHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~ 860 (918)
+.......-+..++.|-.+
T Consensus 242 v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISE 260 (361)
T ss_pred ccchhhccCCceeeEeecC
Confidence 2222222344555555443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-15 Score=169.84 Aligned_cols=230 Identities=17% Similarity=0.183 Sum_probs=162.5
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCc-eeEEeccCCCCeeEEEEcCC
Q 002471 659 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN 734 (918)
Q Consensus 659 Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~ 734 (918)
+..|+|||.+... ...+..|...|.+++|+|||+.|++++.+ ..|++||+.++.. .+..+.+| ..+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999986544 56677788899999999999999988754 3699999986332 23333333 446899999
Q ss_pred CCeEEEEEeCCCcEEEE--EcCCCeeeEEee--cCceEEEEecCCCEEEEEE-cCCeEEEEECC--CceEEEEecCCCCC
Q 002471 735 KDDLICSCDGDGEIRYW--SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA-AENVVSILDAE--TQACRLSLQGHTKP 807 (918)
Q Consensus 735 ~~~ll~sgs~Dg~I~iw--dl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~-~dg~I~i~D~~--t~~~~~~l~~h~~~ 807 (918)
|..++++.+.+|.+.|| |+.++....... .......|+|++..+++++ .++.+.||++. .+.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 99888777778876555 666665443322 2346789999999877766 46777777654 3322 222 3333
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCcEE
Q 002471 808 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM 884 (918)
Q Consensus 808 V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~---~~~~~~ 884 (918)
.++.|+|||++|+..+.+.+.+||+.++... .+ ... .....+.|+|+|++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~-~l--t~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTE-VL--SST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCeE-Ee--cCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 4678999999998888787777999876421 11 111 12356789999999999999987776654 344444
Q ss_pred EEcccCCCeEEEEEeCC
Q 002471 885 TLTAHEGLIAALAVSTE 901 (918)
Q Consensus 885 ~~~~h~~~V~~la~spd 901 (918)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788889999999984
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-14 Score=147.83 Aligned_cols=228 Identities=13% Similarity=0.171 Sum_probs=171.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCe
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 757 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~ 757 (918)
...|..+.|+.+...|..|+.|| .++|..+.-+++. ........|..+-|+.. |++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~-~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF-SKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-cccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577788999999999999999 7888887633322 22223345666777743 55544444 459999998887
Q ss_pred eeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCC---CCCeEEEEEcCCCCEEEEEe-CC--eEE
Q 002471 758 CTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH---TKPIDSVCWDPSGELLASVS-ED--SVR 829 (918)
Q Consensus 758 ~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h---~~~V~si~~spdg~~Las~s-~d--~I~ 829 (918)
.+..+. ..+.++++ +..+++++-.+. |+|||+++-+.++++... ...+..+.+++.+.+|+.-+ .+ .|.
T Consensus 80 ~ICe~~fpt~IL~Vrm--Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRM--NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEE--ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 665554 44445554 445666666555 999999999999888653 44466666666666887643 33 799
Q ss_pred EEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcc--cCCCeEEEEEeCCCCEE
Q 002471 830 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYV 905 (918)
Q Consensus 830 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~vwd~~~~~~~-~~~~--h~~~V~~la~spdg~~L 905 (918)
|||+.+. ..+..+..|.+.+.+++|+++|.+|++++..| .|+||.+.+|..+ .++. ....|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999765 77788889999999999999999999999999 5799999999887 4442 24578999999999999
Q ss_pred EEEecCCcEEEeC
Q 002471 906 ASASHDKFVKLWK 918 (918)
Q Consensus 906 asgs~Dg~I~IWd 918 (918)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999986
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-16 Score=165.67 Aligned_cols=262 Identities=18% Similarity=0.285 Sum_probs=208.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 718 (918)
-.-+.+.|+.+|++|+.|+..|.|..+|+.+++....+.. ...|.++.|-.+..+||++- ...++|||-. +..+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHC 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEee
Confidence 3467789999999999999999999999999998888864 45699999998888888775 5679999876 566777
Q ss_pred eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 719 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
++.| ..|..+.|.|. .+||++++..|.++.-|+.+|+.+..+. +.+..++-+|.+..+-+|...|+|.+|.....
T Consensus 206 lk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 7655 55888999998 5788899999999999999999887775 45566778899888999999999999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 002471 796 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE 874 (918)
Q Consensus 796 ~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~ 874 (918)
+++..+.+|.++|.+|++.++|.|+++.+.| .|+|||++.... +..+.. ......+++|..| +++++....|.
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q---l~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~ 357 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ---LHTYRT-PHPASNLSLSQKG--LLALSYGDHVQ 357 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc---cceeec-CCCcccccccccc--ceeeecCCeee
Confidence 9999999999999999999999999999999 999999998743 333322 3455667777665 66677777899
Q ss_pred EE-ECCCC---cEEEEcc--cCCCeEEEEEeCCCCEEEEEecCC
Q 002471 875 LW-NMSEN---KTMTLTA--HEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 875 vw-d~~~~---~~~~~~~--h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
|| |...+ ....+.. ..+.|..+.|.|-...|..|-..|
T Consensus 358 iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 358 IWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 99 33321 1112222 345899999999777766655444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-13 Score=151.39 Aligned_cols=264 Identities=13% Similarity=0.127 Sum_probs=175.4
Q ss_pred EE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEE
Q 002471 652 LL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 730 (918)
Q Consensus 652 ~L-atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~ 730 (918)
++ ++-..++.|.|.|..+.+.+.++......-..+.|++|++++++++.||.|.++|+.+ .+.+..+... ....+++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-S-SEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecC-CCcceEE
Confidence 44 4555789999999999999999987655445678999999999999999999999998 6677777643 4467899
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----------ceEEEEecCCCEEEEEEcC-CeEEEEECCCceEE-
Q 002471 731 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----------TAQMRFQPHLGRYLAAAAE-NVVSILDAETQACR- 798 (918)
Q Consensus 731 fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----------~~~v~~sp~~~~ll~~~~d-g~I~i~D~~t~~~~- 798 (918)
+++||+++++++..++.|.++|.++.+.++.+... +..+..++....+++.-.| +.|.+.|....+.+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 99999999988889999999999999988877532 2345667777777776665 88999997765433
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC--------------------------------------
Q 002471 799 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE-------------------------------------- 838 (918)
Q Consensus 799 ~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~-------------------------------------- 838 (918)
..............|+|++++++++... .|-++|..++..
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 2233345667889999999987776433 777777665411
Q ss_pred --------------cceEEEeccCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCcEEEEcc--cCCCeEEEEE
Q 002471 839 --------------GECVHELSCNGNKFHSCVFHPTYPSLLVI---G-CYQSLELWNMSENKTMTLTA--HEGLIAALAV 898 (918)
Q Consensus 839 --------------~~~i~~~~~~~~~i~~i~~sp~g~~l~s~---s-~dg~I~vwd~~~~~~~~~~~--h~~~V~~la~ 898 (918)
.+.+..+...+.. .-+..||+++++++. + ..+.|.|+|..+.+.+.... ....+..+.|
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred cccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 1111222222222 345669999999998 3 34699999999998763332 2235999999
Q ss_pred eCCCCEEEEEecCC--cEEEeC
Q 002471 899 STETGYVASASHDK--FVKLWK 918 (918)
Q Consensus 899 spdg~~Lasgs~Dg--~I~IWd 918 (918)
+++|+++..+..|+ .|.|||
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEE
Confidence 99999766655543 598886
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=166.00 Aligned_cols=223 Identities=15% Similarity=0.191 Sum_probs=158.7
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEe-CCCeE
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSS-FDKTV 704 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V 704 (918)
...+..|...|.+.+|||||++|+.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|++++ .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 35567788899999999999999988754 3699999987753 3333333 44789999999888775 58876
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecCceEEEEecCCCEEEEEEc
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~v~~sp~~~~ll~~~~ 783 (918)
.||.++..+..+..+..+...+.++.|+|++..+++++..+|.+.||++.... ....+........|+|++..+++++.
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMING 352 (429)
T ss_pred EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcC
Confidence 66644322334566667777888999999999888777778888888875422 22222221145679999999888777
Q ss_pred CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 784 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
++ +.+||+.+++.......+ ...++.|+|||++|++++.+ .+.+|++.+. ....+..+..+.+.+..++|+|-
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence 54 566999988765433222 34567899999999988877 6777765321 22566667777777888899875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=158.99 Aligned_cols=278 Identities=22% Similarity=0.255 Sum_probs=199.1
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
+....-..-.||+|+++|+... +..|.||.+.++.++..+.+|...++.+.+.+.. .++++++.||+|++||...
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~- 91 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD- 91 (792)
T ss_pred cccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC-
Confidence 3333334456899999888876 5699999999999999999999999999998854 3678999999999999987
Q ss_pred CceeEEeccCCCCeeEEEEcCC---CCeEEEEEeCCC------------cEEEEEcCCCeee--EEeecC--ceEEEEec
Q 002471 713 GYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDG------------EIRYWSINNGSCT--RVFKGG--TAQMRFQP 773 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs~Dg------------~I~iwdl~~~~~~--~~~~~~--~~~v~~sp 773 (918)
+..++++..+ ..|..+.+.|. ..-.+..+..|. .++-+.+.+.... ...+.. ..++.+++
T Consensus 92 ~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 92 GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 6777777643 33444444221 111111222121 1111221111000 000111 23444444
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEE----ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-CCCcceEEEecc
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRLS----LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHELSC 847 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~~----l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s-~~~~~~i~~~~~ 847 (918)
. +.+.....+..+.+|+..++..... -..|...+++.+++|++++++++..| .|.+|.--. .........+.-
T Consensus 171 ~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 171 S-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred C-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 4 5566666677888888887541111 12366678999999999999999988 999996433 333445566777
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|...|.+++|+++|.+|++||..+.+.+|.+.+++...+..-.++|..+.++||+.+.+....|..|.+-
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 8899999999999999999999999999999999977788889999999999999999999999998864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=156.41 Aligned_cols=242 Identities=15% Similarity=0.196 Sum_probs=164.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----eeeEeccCCCCeEEEEE-----CCCCCEEEEEeCCCeEEEEeCC
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~----~~~~l~~h~~~V~~l~f-----spdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
.++...++-.|++|+..- ...++||+...+. .+....-....-+|-+| .+++--|+.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455666666777777654 3478888876321 11111111223344455 3356678888888999999876
Q ss_pred CCCceeEEec----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce--EEEEecCCCEEEEEEcC
Q 002471 711 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 711 ~~~~~~~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~--~v~~sp~~~~ll~~~~d 784 (918)
. ....+.+. -....|+||.|.|.++.+|+.+-.+|.+++||.+. ..... +....+++..+......
T Consensus 204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5 22111111 13478999999999999998999999999999721 11111 11122233332222110
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
...+..++..+..-...|..++|+|||++||+.+.| .+||||+.+. +.+..++..-+...||+|+|||+|
T Consensus 276 ------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 ------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred ------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 011113333333345689999999999999999999 9999999765 455555666778999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002471 864 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 899 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~s 899 (918)
|++|++|.-|.||.+.+++++ .-.+|..+|..|+|+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 667999999999998
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-13 Score=140.04 Aligned_cols=269 Identities=14% Similarity=0.217 Sum_probs=195.3
Q ss_pred CCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCCcee
Q 002471 639 SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 639 ~~V~~l~fspdg~~La-tgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~ 716 (918)
+.|.-|.|..|.-+++ ....|+.|.+|++...+-...+......+..++|+|||+.| .+...|-.|.||.+.+.. .
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--G 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--e
Confidence 4567777877775544 45678899999999888888898889999999999999655 555669999999998732 2
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEe-----------------------------------CCCcEEEEEcCCCeeeEE
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCD-----------------------------------GDGEIRYWSINNGSCTRV 761 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs-----------------------------------~Dg~I~iwdl~~~~~~~~ 761 (918)
..+.-.+..+..++|+++|....+..- +++.+.+||.--.-.+..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 223333445677888888765432211 123355555433222222
Q ss_pred ee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEE---------------------------------------
Q 002471 762 FK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--------------------------------------- 800 (918)
Q Consensus 762 ~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~--------------------------------------- 800 (918)
+. .++..+.|+|.+..+.+|+.|+.++|.+--+.+...+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 32 4677899999999999999999888865332211110
Q ss_pred ---------------------ec------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeccCCC
Q 002471 801 ---------------------LQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 801 ---------------------l~------~h~~~V~si~~spdg~~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
++ .....+.-++|++|..++++-.+. .+-+||++..+ ++..-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhcc
Confidence 00 011235568999999999998877 68999997653 222233467
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 913 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~ 913 (918)
+|....|+|....|+++.....+++|......++......-.|..+.|.-+|..|+.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999989999999998888877777789999999999999999998864
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=164.78 Aligned_cols=266 Identities=15% Similarity=0.206 Sum_probs=187.7
Q ss_pred CCcccccccCccceeeeeeecCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEECC-----CCceeeEecc-------CCC
Q 002471 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD-----TLKSKTNLEE-------HSS 681 (918)
Q Consensus 616 ~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~V~iwd~~-----~~~~~~~l~~-------h~~ 681 (918)
.+++|++.++-.+.-...-..-...|+.+.+-. |..+|++|+.||.|+||+-- +.+.+..+.+ ..+
T Consensus 1087 ~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~ 1166 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARG 1166 (1387)
T ss_pred eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCC
Confidence 456677776644444433334567899999876 55799999999999999732 2233333321 122
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---e
Q 002471 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---C 758 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~ 758 (918)
.-.-++|.....+|+++++-..|||||++.+..+...-.+....|+++.-.-.+.++|++|..||.|++||.+... .
T Consensus 1167 ~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1167 TGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred CCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc
Confidence 2245677776667777777899999999985544445556667788887776667788899999999999998653 2
Q ss_pred eEEee---c--CceEEEEecCC-CEEEEEEcCCeEEEEECCCceE--EEEecCCC---CCeEEEEEcCCCCEEEEEeCCe
Q 002471 759 TRVFK---G--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC--RLSLQGHT---KPIDSVCWDPSGELLASVSEDS 827 (918)
Q Consensus 759 ~~~~~---~--~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~--~~~l~~h~---~~V~si~~spdg~~Las~s~d~ 827 (918)
+..++ . ++..+.+.+.| +.+++++.+|.|++||++.... ...+..|. +.++++..++...++|+|+...
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ 1326 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQL 1326 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcce
Confidence 33332 2 25667777755 5699999999999999998422 22222232 3599999999999999999989
Q ss_pred EEEEECCCCCCcceEEE----eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 828 VRVWTVGSGSEGECVHE----LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~----~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
|+||++... ....++. +....+.+.|++|||..-.+++|..|..|.||......
T Consensus 1327 ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1327 IKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999998643 2122211 11224567999999999999999999999999876543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=154.95 Aligned_cols=191 Identities=23% Similarity=0.287 Sum_probs=152.2
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEec-
Q 002471 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 720 (918)
Q Consensus 642 ~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~- 720 (918)
.+++|+.+|..|++|+.||++|||++.....+.....|...|.++.|+|||+.|++-+.| ..+||++++ +..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~-g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT-GAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc-CchhhhcCC
Confidence 789999999999999999999999999888888889999999999999999999999999 899999998 44444333
Q ss_pred -cCCCCeeEEEEcCCC---Ce-EEEEEeCCCcEEEEEcCCCee---e---EEe--ecCceEEEEecCCCEEEEEEcCCeE
Q 002471 721 -GHSASVMSLDFHPNK---DD-LICSCDGDGEIRYWSINNGSC---T---RVF--KGGTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 721 -~h~~~V~sl~fsp~~---~~-ll~sgs~Dg~I~iwdl~~~~~---~---~~~--~~~~~~v~~sp~~~~ll~~~~dg~I 787 (918)
.....+..+.|+-++ .. +++....-+.|+.||+...+. . ... ...+.+++++.+|++++.++.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233445667787664 22 233334456677777654322 1 111 2367899999999999999999999
Q ss_pred EEEECCCceEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002471 788 SILDAETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 834 (918)
Q Consensus 788 ~i~D~~t~~~~~~l-~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~ 834 (918)
.|++..+-+++..+ +.|...|+.+.|+||.+++++.+.+ ++.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999998777655 4699999999999999999998888 77777664
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-13 Score=154.74 Aligned_cols=233 Identities=14% Similarity=0.144 Sum_probs=167.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|++||+.+ +. .+.+......+..++|+|||.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~-~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GA-VRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CC-eEEccCCCCCcCCeEECCCCC
Confidence 4788998875543 444556778999999999999987653 45799999986 33 222333334456789999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.+| .|++||+.+++....... ......|+|++..++.++.+ + .|+++|+.+++.. .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766666 499999998876554433 35678899999988887764 3 5666677776543 3333444566
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 882 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~ 882 (918)
+.+|+|||++|+..+.+ .|.+||+.++.. . .+.. ........|+|||++|+.++.++ .++++++..+.
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 78999999988776543 588999987632 2 2221 12234678999999999999876 47888997777
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 002471 883 TMTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~spd 901 (918)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 7778888999999999873
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=150.41 Aligned_cols=275 Identities=14% Similarity=0.166 Sum_probs=203.5
Q ss_pred cCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 636 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~L-atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
+|...-+.|..+|||.|| |||.+--.|++||+........-......|.-.-++.|-..++.-..|.+|-+..-.. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 467778899999999876 5677788999999987665554444455666666777766777777788887765432 1
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
...+ .-.....+++++.-.-.|+ .++....|+-++++.|..+..|. +.+.++.+++..+.+++|+.+|.|..||
T Consensus 127 hy~~--RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYRT--RIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eeee--ecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 1111 1223445577765555566 44556789999999999888775 4567788899989999999999999999
Q ss_pred CCCceEEEEecC------CCC-----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002471 792 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859 (918)
Q Consensus 792 ~~t~~~~~~l~~------h~~-----~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 859 (918)
.++...+.++.. |.. .|+++.|+.+|-.+++|... .|.|||+++... .+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 998766655432 322 49999999999999999888 999999998643 2222233456788888877
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 860 TYPS-LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 860 ~g~~-l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.+.- .++......++|||-.+|+.+........|+.+|+-|++.++++|.+++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6332 333334458999999999999777777779999999999999999988877654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=141.88 Aligned_cols=234 Identities=17% Similarity=0.306 Sum_probs=179.7
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 002471 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (918)
Q Consensus 676 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl 753 (918)
+..-..+|+|.+|++|...+|++.....|.||...... +...++..|...|++|+|.|..++++ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 44456789999999999999999999999999987643 56789999999999999999987766 9999999999999
Q ss_pred CC-Ce-----eeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceE----EEEecCCCCCeEEEEEcCCCCEEEEE
Q 002471 754 NN-GS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 754 ~~-~~-----~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~----~~~l~~h~~~V~si~~spdg~~Las~ 823 (918)
.. ++ .+..+.....++.|+|..+.|++++....|.||-.+...- .+.-+.++..|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 43 33 3344567789999999999999999999988887664321 22223467889999999999999999
Q ss_pred eCC-eEEEEEC-----CCCC----------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--EEE
Q 002471 824 SED-SVRVWTV-----GSGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMT 885 (918)
Q Consensus 824 s~d-~I~iwdl-----~s~~----------~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~--~~~ 885 (918)
+.| .+|||.. +... ....+.++....+.++.+.|+|.|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999 8888864 1110 112334444567889999999999999999999999999988775 333
Q ss_pred EcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 886 LTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 886 ~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
+....-+..++.|-.+.. ++.+++|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 333336667777754433 3344444
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=154.47 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=164.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEE
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 730 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~ 730 (918)
..|+.++.||.+.|.+ +.++..+.+..|.+.|.|-.|+|||.-|+++++||.|+||.-. +....++.....+|+|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEE
Confidence 4678888899999887 5678888899999999999999999999999999999999875 444455556778999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC
Q 002471 731 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 807 (918)
Q Consensus 731 fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~ 807 (918)
|.|+.+.++++.+ +.+.|=-+.....+-.. .+-+.++.|++..+.+++++.|-..+|||.- |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999998886655 44555444433333222 3446788999999999999999999999975 5566666779999
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 808 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 808 V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
|++++|.|+ +.++.++.+++|+=..+ .+.|..++|++||..+++|+..|.+.+-
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p~--------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSPR--------------VGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCCC--------------ccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 88888888877743332 5678899999999999999998866553
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=144.79 Aligned_cols=238 Identities=15% Similarity=0.172 Sum_probs=157.5
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
.|...+.+++|.+.|+.++|++|+.++++++.|..+++||+..|..+..+.+|...|..++|.|-+.++++-+.|...++
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEc---
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--- 783 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~--- 783 (918)
+++.... .+.... + ..+....+.+. .....++|--++.+ .-...++|+|+|..+++.+.
T Consensus 192 ~~~~~~~-~~~~~~-~-~~m~~~~~~~~---------e~~s~rLfhDeTlk------sFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 192 FSAKLKQ-VIKRHG-L-DIMPAKAFNER---------EGKSTRLFHDETLK------SFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred eeeeeee-eeeeee-e-eEeeecccCCC---------CcceeeeeecCchh------hhhhhcccCCCCcEEEcccceee
Confidence 7775411 111100 0 00001111111 01112222222111 11233455566555554332
Q ss_pred -C-----CeEEEEECCC-ceEEEEecCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEECCCCCC
Q 002471 784 -E-----NVVSILDAET-QACRLSLQGHTKPIDSVCWDP------------------SGELLASVSEDSVRVWTVGSGSE 838 (918)
Q Consensus 784 -d-----g~I~i~D~~t-~~~~~~l~~h~~~V~si~~sp------------------dg~~Las~s~d~I~iwdl~s~~~ 838 (918)
+ +..++|+-.. .+++..+.+...++..+.|+| .+-.+++++.+.|+|||..+...
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P 333 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP 333 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence 1 1234444332 233334444444444444433 34567888888999999987654
Q ss_pred cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 839 ~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
..++. ..|-..|+.++|+++|.+|++.+.||...+..++..++-
T Consensus 334 ~~~v~--nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 334 LAVVD--NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eEEEe--eeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 44443 346788999999999999999999997777666655443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-12 Score=129.85 Aligned_cols=231 Identities=16% Similarity=0.228 Sum_probs=162.2
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCC------CeEEEEeCCCC
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFD------KTVRVWDADNP 712 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~D------g~V~Iwdl~~~ 712 (918)
....++|+-|...+++|..+ -.+||+++..+.......+.+.+.-+..--..++|+. |+.+ ..|.|||-. .
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-K 84 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-c
Confidence 34559999999999988755 5999999875544333333332222222222345543 3332 469999944 3
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEeec---CceEEEEecCCC-EEEEE--EcCC
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHLG-RYLAA--AAEN 785 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~~~---~~~~v~~sp~~~-~ll~~--~~dg 785 (918)
..++..+. ...+|.+|++.++ ++++. .++.|+||... +-+.++.+.. +..-+++.|..+ .+++. -.-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 66676665 6788999999865 34433 37899999987 4455555542 222333444433 33332 2358
Q ss_pred eEEEEECCCceE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEecc--CCCceEEEEEeC
Q 002471 786 VVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP 859 (918)
Q Consensus 786 ~I~i~D~~t~~~--~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~--~~~~i~~i~~sp 859 (918)
.|.|.|+...+. ...+.+|...|.|++.+-+|.+||+++.. -|||||..++ ..+.+++. ....|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987765 47788999999999999999999999988 6999999988 44555443 245699999999
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 002471 860 TYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~ 880 (918)
+..+|++++..|+|+||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998865
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-12 Score=142.85 Aligned_cols=268 Identities=17% Similarity=0.272 Sum_probs=187.8
Q ss_pred CeEEEEEccCCCEEEEEe-----CC-----CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 640 KVICCHFSSDGKLLATGG-----HD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs-----~D-----g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.++++.|||.|.+|.|=- .+ ..+.+|+++++.....+......-+++.|+.|..+.+ =-..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEec
Confidence 799999999999998621 22 3577999998666665554333337899998875433 223567999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCC-CeEEEE-----EeCCCcEEEEEcCCCe------eeEEeecCceEEEEecCCCE
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNK-DDLICS-----CDGDGEIRYWSINNGS------CTRVFKGGTAQMRFQPHLGR 777 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~s-----gs~Dg~I~iwdl~~~~------~~~~~~~~~~~v~~sp~~~~ 777 (918)
.+....... -|...|..+.++|.. ...||+ .+.-+.|+||.+.... +...|+.....+.|...+.-
T Consensus 154 ~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 154 GSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred CCccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 873333333 357789999999873 334432 3445779999887332 22334556677888888765
Q ss_pred EEEEE-c-----------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEE-EeCC--eEEEEECCCCCCcceE
Q 002471 778 YLAAA-A-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS-VSED--SVRVWTVGSGSEGECV 842 (918)
Q Consensus 778 ll~~~-~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las-~s~d--~I~iwdl~s~~~~~~i 842 (918)
|++.. . +.+++++++....++..+. ..++|.+++|+++++-|++ .+.- ++.|||++. ..+
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v 306 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPV 306 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEe
Confidence 54432 2 2378888888555555544 5789999999999984444 3333 899999964 333
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec------CCc
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKF 913 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~------Dg~ 913 (918)
.. ...++-.++-|+|.|++|+.+|.+ |.|.|||+.+.+++...... .-+-+.|+|||.+|+|++. |+.
T Consensus 307 ~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 307 FD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred Ee--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCC
Confidence 33 346778899999999999999987 59999999997777332222 2345789999999999874 778
Q ss_pred EEEeC
Q 002471 914 VKLWK 918 (918)
Q Consensus 914 I~IWd 918 (918)
|+||+
T Consensus 384 ~Kiwh 388 (566)
T KOG2315|consen 384 IKIWH 388 (566)
T ss_pred eEEEE
Confidence 89985
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=151.68 Aligned_cols=194 Identities=23% Similarity=0.270 Sum_probs=141.4
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002471 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 684 ~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 763 (918)
.+++|+.+|..|++++.||++|||++.+ ...+..+..|...|.+|.|+||+..+ ++.+.| ..+||+++++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~dgk~l-asig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSPDGKFL-ASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCCCCcEE-EEecCC-ceEEEEeccCchhhhcC
Confidence 7899999999999999999999999876 55566777899999999999998754 577777 99999999985544332
Q ss_pred cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC---CE-EEEE-eCC-eEEEEECCCCC
Q 002471 764 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG---EL-LASV-SED-SVRVWTVGSGS 837 (918)
Q Consensus 764 ~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg---~~-Las~-s~d-~I~iwdl~s~~ 837 (918)
.. .....+..+.|+.|+ .+ |++. ... .|+.||+....
T Consensus 225 ~~-------------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 225 PF-------------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred Cc-------------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 10 011223334444443 22 2221 122 45555553322
Q ss_pred Cc--ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002471 838 EG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKF 913 (918)
Q Consensus 838 ~~--~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~ 913 (918)
.. ............|++++.+++|++++.|+.||.|-||+..+.+++ .-..|...|+.+.|+||.+++++.+.|..
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 11 122222233557999999999999999999999999999998887 44579999999999999999999988887
Q ss_pred EEEe
Q 002471 914 VKLW 917 (918)
Q Consensus 914 I~IW 917 (918)
+.|.
T Consensus 348 ~~v~ 351 (398)
T KOG0771|consen 348 AAVT 351 (398)
T ss_pred eeEE
Confidence 7764
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=150.89 Aligned_cols=232 Identities=17% Similarity=0.239 Sum_probs=166.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|++||.+. .....+..|...|.+.+|+|||+.|+..+. +..|++||+.+ +. ...+..+.+.+.+.+|+|+|+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQ-RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeecCCCcccCcEECCCCC
Confidence 4788888754 445667778889999999999999988764 46899999986 33 344555667788899999999
Q ss_pred eEEEEEeCCCc--EEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.++. |++||+.++........ ......|+|++..++.++. + ..|+++|+.+++... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88878777665 77889988766543322 2456889999998887764 3 368888987765543 333345567
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMS 879 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d------g~I~vwd~~ 879 (918)
...|+|||++|+..+.+ .|.+||+..+. ...+.. ...+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 78999999988876543 68888875442 122222 2346678999999998876653 268888988
Q ss_pred CCcEEEEcccCCCeEEEEEeCC
Q 002471 880 ENKTMTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 880 ~~~~~~~~~h~~~V~~la~spd 901 (918)
.+....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665444 3555777777763
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=138.35 Aligned_cols=271 Identities=18% Similarity=0.210 Sum_probs=189.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCCceeEEecc
Q 002471 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG 721 (918)
Q Consensus 643 ~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~ 721 (918)
-++|||+|+++|+++.- .+.|=|.++.+....+.- -+.|.-|.|..|..+++++ ..|+.|.+|++..+.. ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 46899999999999855 788888887765554432 4567888999888877666 5588999999987443 344455
Q ss_pred CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--eecCceEEEEecCCCEEEEEEc----------------
Q 002471 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA---------------- 783 (918)
Q Consensus 722 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~ll~~~~---------------- 783 (918)
....+.+++|+|+|++++.+...|-.|.+|.+.+.++... -+.....++|++++.+.+..+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 6678999999999999999999999999999998765433 2334455666666654443332
Q ss_pred --------------------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------
Q 002471 784 --------------------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------ 836 (918)
Q Consensus 784 --------------------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~------ 836 (918)
++.+.+||.--...+..++ -.-.+..++|+|.+.+|++|+.| .+||.+--+-
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 1123344432221111111 12458889999999999999999 7776442110
Q ss_pred -----------------------------------------CC----------cceEEEec------cCCCceEEEEEeC
Q 002471 837 -----------------------------------------SE----------GECVHELS------CNGNKFHSCVFHP 859 (918)
Q Consensus 837 -----------------------------------------~~----------~~~i~~~~------~~~~~i~~i~~sp 859 (918)
.. ...+..++ .....+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 00 00011111 1122356789999
Q ss_pred CCCEEEEEEcC--CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 860 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 860 ~g~~l~s~s~d--g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|..++++-... +.+.+||+...++..+.....+|....|+|....|+.+.....+++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99888776654 48999999999888777788899999999999888888777778888
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=142.53 Aligned_cols=261 Identities=13% Similarity=0.189 Sum_probs=196.5
Q ss_pred cCCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeeEe------ccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 636 ASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 636 ~H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~~~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
.-...|..++|--|+ ..|...+.|..+..+++....+...+ ......|..++.. +..|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 345678888887765 35555557777887777765544443 3455667666654 3378888889999999
Q ss_pred eCCCCC---ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeeEEeec------------CceEEE
Q 002471 708 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR 770 (918)
Q Consensus 708 dl~~~~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~------------~~~~v~ 770 (918)
.++.+. ..+..+..+ ..+..+.-++...+++++|+.. ..+.|||++..+.+..-+. -...+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 988432 223333333 5577788888888999999999 8999999998865544322 124567
Q ss_pred EecC--CCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec
Q 002471 771 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 846 (918)
Q Consensus 771 ~sp~--~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~ 846 (918)
|.+. ...|++++.-+.|++||.+.+ +++..|..-+.+|+++...|++++|+++... .+..||++.+... ...+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccC
Confidence 7777 678999999999999999976 6777787788999999999999999999888 9999999987322 23366
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC
Q 002471 847 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 847 ~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spd 901 (918)
+..+.|+++..+|..++++++|-|+.|+|+|+.+.+++.-.--...+++|.+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7788999999999999999999999999999999777644444555666666543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-13 Score=152.42 Aligned_cols=232 Identities=17% Similarity=0.151 Sum_probs=165.3
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|++||.+. .....+..+...|.+.+|+|||+.|+.++.+ ..|++||+.+ +.. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCC
Confidence 4688999864 4455566677889999999999999988753 4699999986 332 33334455566789999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc-CC--eEEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.+| .|++||+.+++....... ......|+|++..+++++. ++ .|+++|+.+++.... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887777666 599999998875543322 2356889999998888765 34 477778877654332 22334455
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCc
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK 882 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~~~ 882 (918)
.++|+|||++|+..+.+ .|.+||+.++.. ..+.. ......+.|+|+|++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe----EECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999988776432 699999977632 12221 2234567899999998887764 378889997766
Q ss_pred EEEEcccCCCeEEEEEeC
Q 002471 883 TMTLTAHEGLIAALAVST 900 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~sp 900 (918)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666677788888876
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-11 Score=133.89 Aligned_cols=271 Identities=14% Similarity=0.177 Sum_probs=187.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeC----CCcEEEEECCCC--c--eeeEeccCCCCeEEEEECCCCCEEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS 698 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~----Dg~V~iwd~~~~--~--~~~~l~~h~~~V~~l~fspdg~~Lasg 698 (918)
++..+..+. -......+++++++++|+++.. ++.|..|++... . .+..........+.|++++++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 455555533 3445677999999999999887 468999987753 3 333444345567789999999999999
Q ss_pred eC-CCeEEEEeCCCCCceeEE---ec----------cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeE--
Q 002471 699 SF-DKTVRVWDADNPGYSLRT---FM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR-- 760 (918)
Q Consensus 699 s~-Dg~V~Iwdl~~~~~~~~~---~~----------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~-- 760 (918)
.. +|.|.++++...+..... +. .......++.|+|+++.++++.-....|++|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 86 899999999875543322 11 1234578899999999888777667899999998765 322
Q ss_pred Eee----cCceEEEEecCCCEEEEEEc-CCeEEEEECC--Cce--EEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 002471 761 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 761 ~~~----~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~--t~~--~~~~l~~h------~~~V~si~~spdg~~Las~s~ 825 (918)
.+. .+...+.|+|+++++++... ++.|.+|++. ++. .+..+... ......|+++|||++|+++..
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 24567999999998888776 6789999887 442 22222211 125778999999998888776
Q ss_pred C--eEEEEECC-CCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCcEEEEc--ccCCCeEEEE
Q 002471 826 D--SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA 897 (918)
Q Consensus 826 d--~I~iwdl~-s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d-g~I~vwd~--~~~~~~~~~--~h~~~V~~la 897 (918)
+ .|.+|++. .......+..+...+...+.+.++|+|++|+++..+ +.|.+|++ .+|.+.... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 89999994 333456666666666678999999999999998854 58888866 566655332 2344566665
Q ss_pred E
Q 002471 898 V 898 (918)
Q Consensus 898 ~ 898 (918)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 5
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-12 Score=145.07 Aligned_cols=203 Identities=15% Similarity=0.205 Sum_probs=146.4
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCeee--EEeecCceEEEEecCCCEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCT--RVFKGGTAQMRFQPHLGRY 778 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs--~Dg~I~iwdl~~~~~~--~~~~~~~~~v~~sp~~~~l 778 (918)
.|.+||.+. ...+.+..+...+.+.+|+|||..++++.. .+..|++||+.+++.. ..+.+....+.|+|++..+
T Consensus 180 ~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 688888874 233445556778999999999988876543 2457999999888543 3455666778999999988
Q ss_pred EEEEc-CC--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCc
Q 002471 779 LAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 779 l~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
+.... ++ .|++||+.+++.... ..+...+...+|+|||+.|+..+.+ .|+++|+.++.. ..+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~----~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP----QRITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe----EEeecCCCC
Confidence 87643 44 599999998876543 3344567889999999988776653 455557665422 222233444
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002471 852 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 913 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~ 913 (918)
.....|+|+|++|+..+.++ .|++||+.+++...+... .......|+|||++|+.++.|+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 56788999999998876543 689999998886655432 23457889999999999988765
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-14 Score=163.18 Aligned_cols=246 Identities=21% Similarity=0.266 Sum_probs=185.7
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
+..+....+||.+.|+.++.+....++|+++.|..|++|.+.++.++..+.+|++.|++|+|+|-. +.+.||++++
T Consensus 221 t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~ 296 (1113)
T KOG0644|consen 221 TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRI 296 (1113)
T ss_pred chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEe
Confidence 446778899999999999999999999999999999999999999999999999999999999964 7788999999
Q ss_pred EeCCC-CC-ceeEEec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCC-CEEEEEE
Q 002471 707 WDADN-PG-YSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLAAA 782 (918)
Q Consensus 707 wdl~~-~~-~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~-~~ll~~~ 782 (918)
||.+- .. ..-+-+. ....-+.++-|...+..++ |++.|++-..|.+....+.... ..-+..+.+. ...+++-
T Consensus 297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred ccccccccccCCCCCCcccccceeeeeccccccccc-cccCCcccccchhhHhhhhccc---eEEEeccccccccceeee
Confidence 99971 10 0001111 1234566677776666555 9999999999987643322111 0001111122 3445555
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
.+-.+.+|++.++...+.+.+|...+..+.++|-.. +..+++.| .+.|||+-.+...+ .+......+....|+++
T Consensus 373 ~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik---~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK---HYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce---eeecccceeeccccCCC
Confidence 677899999999999999999999999999999665 55567777 99999998774332 22233677888899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcE
Q 002471 861 YPSLLVIGCYQSLELWNMSENKT 883 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~ 883 (918)
|..++....-|.++|+....++.
T Consensus 450 gts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 450 GTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CceEecCCCCCceEEeccCCCcc
Confidence 99999988889999998766553
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-12 Score=141.05 Aligned_cols=167 Identities=15% Similarity=0.238 Sum_probs=129.2
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEec----cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCC---------
Q 002471 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--------- 713 (918)
Q Consensus 648 pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~----~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~--------- 713 (918)
+++--|+.|-..|.|.+.|....+..+.+. -....|+||.|-|.++ .++++-.+|.+++||.+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 456667888888999988865432222121 2347899999999554 55666679999999774210
Q ss_pred ------------------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---EeecCceEEEEe
Q 002471 714 ------------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQ 772 (918)
Q Consensus 714 ------------------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~s 772 (918)
.++..+.--.+.|..++|+|||.+ |++.+.||.+||||..+.+++. .+.++..|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 011112223457899999998765 5689999999999999887654 456789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcC
Q 002471 773 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 815 (918)
Q Consensus 773 p~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp 815 (918)
||++++++|+.|.-|.||.+...+.+..-.+|+.+|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=135.54 Aligned_cols=241 Identities=18% Similarity=0.351 Sum_probs=168.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccC------------CCCeEEEEECCCCC--EEEE
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLAT 697 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-----~~~~l~~h------------~~~V~~l~fspdg~--~Las 697 (918)
..+-|.+|.|..+|.+||||+.+|.|.+|.-+... ....+..| ...|..|.|.+++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45679999999999999999999999999754222 22333333 34688999998654 5777
Q ss_pred EeCCCeEEEEeCCCCCce----------------------------------eEEe-ccCCCCeeEEEEcCCCCeEEEEE
Q 002471 698 SSFDKTVRVWDADNPGYS----------------------------------LRTF-MGHSASVMSLDFHPNKDDLICSC 742 (918)
Q Consensus 698 gs~Dg~V~Iwdl~~~~~~----------------------------------~~~~-~~h~~~V~sl~fsp~~~~ll~sg 742 (918)
.+.|++|++|.+...+.. .+.+ ..|..-|.+|.++.|...++ ++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 788999999988642211 1111 25788899999999987766 44
Q ss_pred eCCCcEEEEEcCCCee-eEE--ee--------cCceEEEEecCC-CEEEEEEcCCeEEEEECCCceEE------EE----
Q 002471 743 DGDGEIRYWSINNGSC-TRV--FK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR------LS---- 800 (918)
Q Consensus 743 s~Dg~I~iwdl~~~~~-~~~--~~--------~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~------~~---- 800 (918)
+|-.|.+|+++--.. ... ++ .-+++..|+|.. +.++..++.|+|++.|++..... +.
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 588999999874321 111 11 124556788875 56677788999999999843211 11
Q ss_pred ------ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCC------------C---ceEEEEEeC
Q 002471 801 ------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------N---KFHSCVFHP 859 (918)
Q Consensus 801 ------l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~------------~---~i~~i~~sp 859 (918)
|..-...|..+.|+++|+|+++-+.-+|+|||+.... +.+..+..|. . .-..|+|+-
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 1112245788999999999998888899999996543 2333332221 1 124678999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC
Q 002471 860 TYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
++.++++|+..+.+++|++..|
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEecccccceEEEecCCCC
Confidence 9999999999999999996544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=139.04 Aligned_cols=251 Identities=14% Similarity=0.152 Sum_probs=163.6
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeeEeccC-------CCCeEEEEECCCCCEEEEEeC-
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSMPRLATSSF- 700 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs-~Dg~V~iwd~~~~~~~~~l~~h-------~~~V~~l~fspdg~~Lasgs~- 700 (918)
.+.+++... ...++++|+||+++++++ .++.|.|+|.++.+.++.+... ...+..|..++....+++.-.
T Consensus 70 ~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 70 VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 444454433 468899999999999876 5899999999999999887643 346888888998886666555
Q ss_pred CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc------eEEEEecC
Q 002471 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT------AQMRFQPH 774 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~------~~v~~sp~ 774 (918)
.+.|.+-|......................|.|++++++++...++.|-++|.++++.+..+..+. ..--.+|.
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 588888888765444444444566778899999999888888888999999999998776654211 11112233
Q ss_pred CC----------EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE---eCC--eEEEEECCCCCCc
Q 002471 775 LG----------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEG 839 (918)
Q Consensus 775 ~~----------~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~---s~d--~I~iwdl~s~~~~ 839 (918)
.+ ..+.....+.+.+||....+.+.++...... ..+..+|+++++++. +.+ .|.|+|.++.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--- 304 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--- 304 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---
Confidence 22 2223334456667888889999999876666 778889999999988 444 8999999876
Q ss_pred ceEEEecc-CCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEE
Q 002471 840 ECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMT 885 (918)
Q Consensus 840 ~~i~~~~~-~~~~i~~i~~sp~g~~l~s~s~dg--~I~vwd~~~~~~~~ 885 (918)
+.+..+.. ....+..+.|+++|++++++..++ .|.|||..+.+++.
T Consensus 305 ~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 305 KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 44555432 233588999999999988877654 69999999999883
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.3e-11 Score=131.94 Aligned_cols=266 Identities=16% Similarity=0.167 Sum_probs=179.5
Q ss_pred EEEEeCC----CcEEEEEC--CCCceeeEe-ccCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeCCCC-Cc--eeEE
Q 002471 653 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT 718 (918)
Q Consensus 653 Latgs~D----g~V~iwd~--~~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~----Dg~V~Iwdl~~~-~~--~~~~ 718 (918)
+++|+++ +.|++|++ ++++....- .........|++++++++|+++.. ++.|..|++... +. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5666666 68999988 344432211 124455678899999999999877 579999999864 22 2223
Q ss_pred eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e-------------ecCceEEEEecCCCEEEEE
Q 002471 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F-------------KGGTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 719 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~-------------~~~~~~v~~sp~~~~ll~~ 781 (918)
..........|+++|+++.++++...+|.|.++++.. +..... + ..+..++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323445567999999998888877899999999987 433322 1 1234578999999998887
Q ss_pred Ec-CCeEEEEECCCce--E--EEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEeccC----
Q 002471 782 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSCN---- 848 (918)
Q Consensus 782 ~~-dg~I~i~D~~t~~--~--~~~l~-~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~-~~~~~i~~~~~~---- 848 (918)
.. .+.|.+|++.... . ...+. .....-+.++|+|+++++++..+. +|.+|++... .....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 65 5689999987654 2 22222 244567899999999988887765 8999998722 122333333221
Q ss_pred --CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCcEE---EEcccCCCeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 002471 849 --GNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 918 (918)
Q Consensus 849 --~~~i~~i~~sp~g~~l~s~s~d-g~I~vwd~~--~~~~~---~~~~h~~~V~~la~spdg~~Lasgs-~Dg~I~IWd 918 (918)
......++++|||++|+++... +.|.+|++. ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999988754 589999983 34443 2333345689999999999999887 467888874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-12 Score=145.26 Aligned_cols=233 Identities=18% Similarity=0.158 Sum_probs=157.3
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|.+||.+ +.....+..+...|.+.+|+|||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+.+..|+||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 457777764 45555666778889999999999999887753 3599999987 333 23333445667899999999
Q ss_pred eEEEEEeCCCcEEEEE--cCCCeeeEEee--cCceEEEEecCCCEEEEEEc-CCe--EEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDGEIRYWS--INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENV--VSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg~I~iwd--l~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~-dg~--I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.+|...||. +..+....... .......|+|++..++.++. ++. |+++++.++...... .......
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 8887888888766665 44444322221 23456789999998887665 344 444555555433222 2223345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 882 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~ 882 (918)
...|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 67899999988876643 599999987632 12222 22345679999999999888665 57777885544
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 002471 883 TMTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~spd 901 (918)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888888873
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=137.12 Aligned_cols=235 Identities=16% Similarity=0.176 Sum_probs=177.6
Q ss_pred CCCCeEEEEECCCCC--EEEEEeCCCeEEEEeCCCCCce-----eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEE
Q 002471 679 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (918)
Q Consensus 679 h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~~~~~-----~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iw 751 (918)
....|..++|.-++. .|+.++.|..+.++++...+.. +.........|..+.... . .|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--C-EEEEEecCCcEEEE
Confidence 345677777776544 3444446767777777653221 123445667777777652 3 45589999999999
Q ss_pred EcCCCe-----eeEEee-cCceEEEEecCCCEEEE-EEcC--CeEEEEECCCceEEEEecCC---------CCCeEEEEE
Q 002471 752 SINNGS-----CTRVFK-GGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGH---------TKPIDSVCW 813 (918)
Q Consensus 752 dl~~~~-----~~~~~~-~~~~~v~~sp~~~~ll~-~~~d--g~I~i~D~~t~~~~~~l~~h---------~~~V~si~~ 813 (918)
.++.+. .+..-. .+...+.-.+....+++ |+.+ +.+.|||++..+.++.-+.- .-+++.+.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998443 222222 23445566666666666 6667 78999999998777664432 235788899
Q ss_pred cCC--CCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcc
Q 002471 814 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA 888 (918)
Q Consensus 814 spd--g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~ 888 (918)
.+. ...|++++.- .|++||.+.+. +++..+......++++...|++++|+++...+.|..||++.+++. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 6788888877 99999998654 677777777999999999999999999999999999999999988 4789
Q ss_pred cCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 889 HEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 889 h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..+.|++|..+|.+.+|++||-|..|||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999997
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=151.52 Aligned_cols=249 Identities=19% Similarity=0.271 Sum_probs=172.7
Q ss_pred EECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCC------ceeEEeccCCCCeeEEEEcCCCCe
Q 002471 665 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 665 wd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ 737 (918)
|+. .|..+..+..|+..|..++.+++. .++++||.||+|+||++..-. ....++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 577888999999999999998865 899999999999999987421 122344445678889999988776
Q ss_pred EEEEEeCCCcEEEEEcCCCe-------eeEEee----cCceEE-EEecC-CC-EEEEEEcCCeEEEEECCCceEEEEecC
Q 002471 738 LICSCDGDGEIRYWSINNGS-------CTRVFK----GGTAQM-RFQPH-LG-RYLAAAAENVVSILDAETQACRLSLQG 803 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdl~~~~-------~~~~~~----~~~~~v-~~sp~-~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~ 803 (918)
+. .++.||.|++.+++... +.+..+ +.+..+ ++... .. .++++..-+.|..||+++.....+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 66899999999998632 111111 111111 12222 23 566677788999999998766665543
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec-cCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 002471 804 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYP---SLLVIG--CYQSLE 874 (918)
Q Consensus 804 --h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~-~~~~~i~~i~~sp~g~---~l~s~s--~dg~I~ 874 (918)
..+.|++++.+|.+.++++|+.. .+.+||++-+ ..+..+. .+..++..+..+|-.+ ..++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 34679999999999999999988 9999999865 3333222 2346677777666443 444444 456999
Q ss_pred EEECCCCcEE-EEcc-------------------cCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 875 LWNMSENKTM-TLTA-------------------HEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 875 vwd~~~~~~~-~~~~-------------------h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|++.++.+. .+.. +.-....+++...+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988644 2211 111233344555567899999999999998
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-12 Score=128.47 Aligned_cols=229 Identities=13% Similarity=0.204 Sum_probs=164.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee-EEeccCCCCeeEEEEcCCCCeEEEEEeCC------CcEEEEEcC
Q 002471 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSIN 754 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~ 754 (918)
....++|+.|...+++|.++| .|||+++.-++.. +.+....-.+..+-|- .+.+.+.|+.+ +.|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999999999998888 9999997522211 1122112233334443 24455556544 579999977
Q ss_pred CCeeeEEe--ecCceEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--e
Q 002471 755 NGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQG--HTKPIDSVCWDPSGELLASVSED--S 827 (918)
Q Consensus 755 ~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~--h~~~V~si~~spdg~~Las~s~d--~ 827 (918)
..+++.++ ..++..+++.++ .++...++.|+||... +.+.++.+.. ....+.+++-..+..+||.-+.. .
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777665 457777777765 4556678899999887 4455555543 23445444444444577766655 8
Q ss_pred EEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEc--ccCCCeEEEEEeCCCC
Q 002471 828 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLT--AHEGLIAALAVSTETG 903 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~vwd~~~~~~~-~~~--~h~~~V~~la~spdg~ 903 (918)
|.|-|+...... .-..+..|...|.|++.+-+|..+++++..| -|+|||..+|+.+ ++. .....|.+++|+|+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999765332 3466788999999999999999999999999 5899999999988 443 3456799999999999
Q ss_pred EEEEEecCCcEEEe
Q 002471 904 YVASASHDKFVKLW 917 (918)
Q Consensus 904 ~Lasgs~Dg~I~IW 917 (918)
+||.+|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999998
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-12 Score=146.68 Aligned_cols=221 Identities=19% Similarity=0.249 Sum_probs=151.2
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCCeEEEE
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVW 707 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~V~Iw 707 (918)
..+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+. .+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455678889999999999999887753 359999999886543 3334456778999999998874 5678887777
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEc--CCCeeeEE-eec-CceEEEEecCCCEEEEEEc
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRV-FKG-GTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl--~~~~~~~~-~~~-~~~~v~~sp~~~~ll~~~~ 783 (918)
.++..+...+.+..+...+....|+|||..+++++..+|...||.+ .+++.... +.+ ......|+|++..++.++.
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 6543334455666666667788999999988877666676666655 44443332 222 2345789999999888776
Q ss_pred CC---eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 784 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 784 dg---~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
++ .|++||+.+++...... ......+.|+|||++|+..+.+ .+.+.++. + .....+..+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence 54 69999998886554322 2344678999999987777654 35565663 2 22333333445566667
Q ss_pred EeC
Q 002471 857 FHP 859 (918)
Q Consensus 857 ~sp 859 (918)
|+|
T Consensus 422 wsp 424 (427)
T PRK02889 422 WGP 424 (427)
T ss_pred cCC
Confidence 765
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=144.76 Aligned_cols=249 Identities=20% Similarity=0.280 Sum_probs=189.3
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC-CCeEEEEEeCCCcE
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEI 748 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I 748 (918)
......|..|.+.|..|.|+..|..|++|+.|..|.+||.......+....+|...|.-..|.|. +..-+++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 44566788999999999999999999999999999999999866667777889999988889886 34456799999999
Q ss_pred EEEEcCCCe------eeEEeecCceEEEEecCCC-EEEEEEcCCeEEEEECCCceEEEEe---cCCCC---CeEEEEEcC
Q 002471 749 RYWSINNGS------CTRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSL---QGHTK---PIDSVCWDP 815 (918)
Q Consensus 749 ~iwdl~~~~------~~~~~~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~---~V~si~~sp 815 (918)
++=.+.... ++....+++..++..|+.. .|++++.|+.+.-+|++.......+ +.+.. ....|+.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 998775432 3334566778888888774 5777888999999999987433222 22333 567889999
Q ss_pred CCC-EEEEEeCC-eEEEEECCCCCCc---ceEEEe------ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--C-
Q 002471 816 SGE-LLASVSED-SVRVWTVGSGSEG---ECVHEL------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--N- 881 (918)
Q Consensus 816 dg~-~Las~s~d-~I~iwdl~s~~~~---~~i~~~------~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~--~- 881 (918)
... .+++++.| .++|||.+..... ..+..+ ......|++++|+.++.-|++...|..|++|.-.- +
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 666 88888888 9999998764321 111111 12345699999999999999999999999995432 2
Q ss_pred ---------cEE--EEcccCC--CeEEEEE-eCCCCEEEEEecCCcEEEeC
Q 002471 882 ---------KTM--TLTAHEG--LIAALAV-STETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 ---------~~~--~~~~h~~--~V~~la~-spdg~~Lasgs~Dg~I~IWd 918 (918)
..+ .+++|.. .|.++-| -|...|+++|++-|.|.|||
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 111 3667764 5777755 68889999999999999997
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=134.11 Aligned_cols=250 Identities=17% Similarity=0.272 Sum_probs=189.1
Q ss_pred ccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC-CCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCe
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 703 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~-~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~ 703 (918)
+.+.....++||.+.|++...-|...-+++.+.|.+|+||-- +.++.-..+. .-..+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 355677889999999999999998889999999999999963 3444433333 34578999999999999999999999
Q ss_pred EEEEeCCCC---CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEE
Q 002471 704 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRY 778 (918)
Q Consensus 704 V~Iwdl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~l 778 (918)
|.-+.+... ...++.+..|...|..+.|+.... .+++++.|..+.---.+.+..+..+. .....+.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 999977542 334567778999999999987755 45588888777554455554433222 22222222221 44
Q ss_pred EEEEcCCeEEEEE--CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEE
Q 002471 779 LAAAAENVVSILD--AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 855 (918)
Q Consensus 779 l~~~~dg~I~i~D--~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 855 (918)
+++...|.|.+.. ...-..+.++.+|...+++++|.+...+|.+|..| .|.+||+.-.. ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 5555566665544 44557788999999999999999999999999999 99999996542 4556777888888888
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 856 VFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
..-+.-+.+++++.|+.|.+||++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888899999999999999864
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-12 Score=139.59 Aligned_cols=238 Identities=17% Similarity=0.212 Sum_probs=172.1
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002471 678 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 678 ~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 756 (918)
.+....+.|..+|||.|| ++|.+--.|+|||+.+ ..++.-.+....|..+....++-.-+|.-..|.+|-+...-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 477888999999999986 5666788999999986 2333333333444444433332222233445777766543322
Q ss_pred eeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002471 757 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 835 (918)
Q Consensus 757 ~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s 835 (918)
.....+......++++.....+++++....|+-++++.|..+..+......+++|..++...+|++|+.+ .|.+||.++
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 2222233344556666666778888889999999999999999988888999999999999999999988 999999988
Q ss_pred CCCcceEEE---eccCCC-----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC--CeEEEEEeCC--CC
Q 002471 836 GSEGECVHE---LSCNGN-----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--TG 903 (918)
Q Consensus 836 ~~~~~~i~~---~~~~~~-----~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~--~V~~la~spd--g~ 903 (918)
......+.. +..+.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+.+.+..|.. +|..+.|.+. ..
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 644333322 222323 38999999999999999999999999999999998777764 7888888665 34
Q ss_pred EEEEEecCCcEEEeC
Q 002471 904 YVASASHDKFVKLWK 918 (918)
Q Consensus 904 ~Lasgs~Dg~I~IWd 918 (918)
.|+|. +...++|||
T Consensus 287 ~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWD 300 (703)
T ss_pred eEEec-chHHhhhcc
Confidence 56554 456789997
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=146.61 Aligned_cols=179 Identities=19% Similarity=0.291 Sum_probs=131.1
Q ss_pred ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC-CCeEEEEEeCCCcEE
Q 002471 671 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR 749 (918)
Q Consensus 671 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~ 749 (918)
.....+.+|.+.|+|+.|+.+|.+|++|++|-.|.|||.-..+.....-++|...|.++.|.|. ++.+|++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456788999999999999999999999999999999998644444556799999999999996 566888999999999
Q ss_pred EEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-e
Q 002471 750 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-S 827 (918)
Q Consensus 750 iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~ 827 (918)
+||+...+.-.. |. .-.+..+.+..|...|..|+..|++ ..|.++++| +
T Consensus 121 lfdl~~~~~~~~----------------------d~-------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 121 LFDLDSSKEGGM----------------------DH-------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred EEeccccccccc----------------------cc-------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 999986432110 00 0011223345577888888888888 588888888 9
Q ss_pred EEEEECCCCCCcc----eE---EEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEC
Q 002471 828 VRVWTVGSGSEGE----CV---HELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNM 878 (918)
Q Consensus 828 I~iwdl~s~~~~~----~i---~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~ 878 (918)
|+-||++...... +. ..+...--...+|.++|.. .+|++|+.|-..++||.
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 9999997632111 11 1111112345688888865 46788888889999994
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=142.42 Aligned_cols=221 Identities=18% Similarity=0.242 Sum_probs=153.0
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCC--e
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--T 703 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~ 703 (918)
....+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+.|+. .+.+| .
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 345566778889999999999999988744 36999999877653 33334455668899999997764 45555 5
Q ss_pred EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeeEEe-ec-CceEEEEecCCCEEE
Q 002471 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KG-GTAQMRFQPHLGRYL 779 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~-~~~~v~~sp~~~~ll 779 (918)
|++||+.+ +. +..+..+......++|+|++..++++...+|. |+++|+.+++..+.. .+ ......|+|++..++
T Consensus 274 Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 274 IYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 99999986 33 44555566666789999999888877666665 677777776654432 22 234579999999988
Q ss_pred EEEcCC---eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCce
Q 002471 780 AAAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 780 ~~~~dg---~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
....++ .|.+||+.+++.. .+. +......+.|+|||++|+..+.+ .|.++++... ....+..+.+.+
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~ 425 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEV 425 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCC
Confidence 876543 6999999888755 333 23345577999999977766653 5778887432 233333334555
Q ss_pred EEEEEeC
Q 002471 853 HSCVFHP 859 (918)
Q Consensus 853 ~~i~~sp 859 (918)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 5666665
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-11 Score=130.05 Aligned_cols=288 Identities=16% Similarity=0.213 Sum_probs=201.0
Q ss_pred cccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC---------------cEEEEECCCCceeeEeccCCCC--
Q 002471 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK---------------KAVLWHTDTLKSKTNLEEHSSL-- 682 (918)
Q Consensus 620 ~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg---------------~V~iwd~~~~~~~~~l~~h~~~-- 682 (918)
+..+.+..+..+..++ ...|..+.|||.++||.+=+..+ .+.|||+.++..+..+..-..+
T Consensus 55 V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~ 132 (561)
T COG5354 55 VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL 132 (561)
T ss_pred eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCccc
Confidence 3333443444333332 34699999999999999966443 4999999999999999877666
Q ss_pred eE-EEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccC-CCCeeEEEEcCCCCe-EEE-----EEeCCCcEEEEEcC
Q 002471 683 IT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDD-LIC-----SCDGDGEIRYWSIN 754 (918)
Q Consensus 683 V~-~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h-~~~V~sl~fsp~~~~-ll~-----sgs~Dg~I~iwdl~ 754 (918)
.+ -+.|+-+.+++|-. ....+.|+++ ++......+..- ...|....|+|.+++ .|| ..+.++.+++|.+.
T Consensus 133 ~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp 210 (561)
T COG5354 133 GWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP 210 (561)
T ss_pred ccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc
Confidence 55 78899888877655 3445999997 323222222111 356888889987433 222 24568899999998
Q ss_pred CCeeeEE---eecCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEE
Q 002471 755 NGSCTRV---FKGGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 820 (918)
Q Consensus 755 ~~~~~~~---~~~~~~~v~~sp~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~L 820 (918)
.++.+.. ++.....+.|.+.+..+++-.. +..++|+++....+.... +-.++|...+|.|.++.|
T Consensus 211 ~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F 289 (561)
T COG5354 211 KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRF 289 (561)
T ss_pred CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCce
Confidence 7765543 3456677889999888776432 357889998865554443 567899999999998866
Q ss_pred EEEe--CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeE
Q 002471 821 ASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIA 894 (918)
Q Consensus 821 as~s--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~~~~~h~~~V~ 894 (918)
++++ .. .+.++|++.. ....+ ....-..+.|+|.++++++++.|+ .|.+||......+.-.-......
T Consensus 290 ~vi~g~~pa~~s~~~lr~N----l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s 363 (561)
T COG5354 290 AVISGYMPASVSVFDLRGN----LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS 363 (561)
T ss_pred eEEecccccceeecccccc----eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCce
Confidence 6555 44 8999999753 22222 244556778999999999998874 89999998776653222333445
Q ss_pred EEEEeCCCCEEEEEe------cCCcEEEeC
Q 002471 895 ALAVSTETGYVASAS------HDKFVKLWK 918 (918)
Q Consensus 895 ~la~spdg~~Lasgs------~Dg~I~IWd 918 (918)
-+.|+||+.++.+.. .|..|+|||
T Consensus 364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred EeeccCCceEEEecCCCcccccCcceEEEE
Confidence 678999999888764 377899996
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-11 Score=138.77 Aligned_cols=230 Identities=20% Similarity=0.216 Sum_probs=157.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|.++|.+.. ....+..+...+.+.+|+|||++|+.++.+ ..|++||+.++ .. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~~-~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-QR-EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-CE-EEeecCCCCccceEECCCCC
Confidence 46788887543 345555677789999999999999988754 47999999873 22 33334556677899999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.++ .|++||+.++....... .......|++++..++.++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776655 58999998776443332 223457899999988877653 2 6888898877643 3333456677
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 882 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~ 882 (918)
.+.|+|+|++|+.++.+ .|.+||+.++.. . .+.. ........|+|++++|+..+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~---~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-R---VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-E---EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 88999999988877654 688899876421 1 2221 12234568999999998887765 56666765544
Q ss_pred EEEEcccCCCeEEEEE
Q 002471 883 TMTLTAHEGLIAALAV 898 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~ 898 (918)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4444444555555544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-11 Score=139.63 Aligned_cols=202 Identities=16% Similarity=0.215 Sum_probs=145.3
Q ss_pred CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeE--EeecCceEEEEecCCCE
Q 002471 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGR 777 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~--~~~~~~~~v~~sp~~~~ 777 (918)
..|.+||.+ +...+.+..|...|.+.+|+|||+.++++... +..|++||+.+++... .+.+......|+|++..
T Consensus 182 ~~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 368888875 44556677788899999999999887765533 4689999999886543 33455667889999998
Q ss_pred EEEEE-cCC--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCC
Q 002471 778 YLAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 778 ll~~~-~dg--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
+++.. .++ .|++||++++... .+..+.......+|+|||+.|+..+.. .|++||+..+.. ..+.....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~----~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP----RRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe----EEeecCCC
Confidence 87554 344 5888899887654 355566667789999999988776643 688889865422 22222344
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
.+....|+|+|++|+....++ .|.+||+.++....+. ....+..+.|+|||++|+..+.+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 566788999999998877543 6889998766544333 23457789999999998776543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=128.90 Aligned_cols=203 Identities=19% Similarity=0.256 Sum_probs=149.9
Q ss_pred eeeeeee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--------------Ee-----------------
Q 002471 629 KEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--------------NL----------------- 676 (918)
Q Consensus 629 ~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~--------------~l----------------- 676 (918)
..+..++ .|...|+.+.--|. ..|.+-+.|+++.+|++.-...+. .+
T Consensus 46 r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg 124 (323)
T KOG0322|consen 46 RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG 124 (323)
T ss_pred ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcc
Confidence 3444555 56677777777776 467777788888888765411110 00
Q ss_pred ----------------------ccCCCCeEEEEECC-CCC--EEEEEeCCCeEEEEeCCCCCc---------eeEEeccC
Q 002471 677 ----------------------EEHSSLITDVRFSP-SMP--RLATSSFDKTVRVWDADNPGY---------SLRTFMGH 722 (918)
Q Consensus 677 ----------------------~~h~~~V~~l~fsp-dg~--~Lasgs~Dg~V~Iwdl~~~~~---------~~~~~~~h 722 (918)
....+.|.|..|.. +++ +|++|-++|.|.+||+.++.+ .+.....|
T Consensus 125 sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash 204 (323)
T KOG0322|consen 125 SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH 204 (323)
T ss_pred cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc
Confidence 01234466666543 333 356667799999999998422 23344579
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--e-----eeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 723 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 723 ~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~--~-----~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
..+|.++.|.+.-+.=+ +|+.+..+..|++... . .+..-..++..+++.||++.+++++.|++|+||..++.
T Consensus 205 ~qpvlsldyas~~~rGi-sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 205 KQPVLSLDYASSCDRGI-SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred cCcceeeeechhhcCCc-CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 99999999987544334 7888888999988653 1 22223356788999999999999999999999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 796 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 796 ~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
.++..++-|...|.+++|+|+..++++++.| +|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999 9999986
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-13 Score=144.34 Aligned_cols=227 Identities=15% Similarity=0.183 Sum_probs=182.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002471 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~ 760 (918)
-.-..+.|+.+|++|+.|+..|.|..+|..+ +.....+. -...|.++.|..+.. +| +......++|||-. |..++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHneq-~~-AVAQK~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNEQ-FF-AVAQKKYVYVYDNN-GTELH 204 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcchH-HH-HhhhhceEEEecCC-CcEEe
Confidence 3456789999999999999999999999998 44444333 456788999987644 45 34457899999965 55555
Q ss_pred Eee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002471 761 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 761 ~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~ 837 (918)
.++ ..+..+.|.|..-.|++++..|.+...|+.+|+.+..+..-.+.+..++-+|-...+-+|..+ +|.+|...+.
T Consensus 205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk- 283 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK- 283 (545)
T ss_pred ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-
Confidence 554 356778899987777788888999999999999999998888899999999988888888877 9999998765
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
+.+..+-+|.++|.++++.++|.|+++.+.|..|+|||++....+ ++.. ......++||..| +++++....|.|
T Consensus 284 --ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 284 --EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred --chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 566777889999999999999999999999999999999987755 3333 5567788887766 334455567999
Q ss_pred eC
Q 002471 917 WK 918 (918)
Q Consensus 917 Wd 918 (918)
|+
T Consensus 359 w~ 360 (545)
T KOG1272|consen 359 WK 360 (545)
T ss_pred eh
Confidence 95
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-11 Score=128.30 Aligned_cols=227 Identities=18% Similarity=0.254 Sum_probs=142.8
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~-Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.-.+| ..|+++.|.+||..|++++. |..|.|||.+++..+.......+.++-+.|+||+.+|+++..|+..++|....
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 34456 78999999999999999985 57899999999887777656677899999999999999999999999997665
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
...+.+... ..+.|...+|+|+|..+|++++..-.| |.+.....-..+.+ .++....+.+-|
T Consensus 270 ~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~~~~---------------~~~~k~~lliaD 331 (445)
T KOG2139|consen 270 SWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSVFLR---------------PQSIKRVLLIAD 331 (445)
T ss_pred cceecceec-cCCceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCccccC---------------cccceeeeeecc
Confidence 333333333 345899999999999999888755444 43321111111110 111111222333
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeccCCCceEEEEEeC---
Q 002471 792 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP--- 859 (918)
Q Consensus 792 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp--- 859 (918)
+..-....--+--.+++.+++|+|.|++|++.-.+ .|.+||.+..........-...+..-..+.|+|
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n 411 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKN 411 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeeccc
Confidence 32211110001124678899999999999987654 256677664422222211111112233445544
Q ss_pred CCCEEEEEEcCCeEEEEEC
Q 002471 860 TYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~ 878 (918)
++.+|.++-..|.|.-|++
T Consensus 412 ~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCcEEEEEeccCceEeeee
Confidence 4556666666677766654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-11 Score=130.23 Aligned_cols=267 Identities=14% Similarity=0.193 Sum_probs=182.0
Q ss_pred CeEEEEEccCCCEEEEEeC-----------CCcEEEEECCCCceeeEeccC--CCCe-EEEEECCCCCEEEEEeCCCeEE
Q 002471 640 KVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEEH--SSLI-TDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~-----------Dg~V~iwd~~~~~~~~~l~~h--~~~V-~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
.|.-+.|||..+||+|-+. ...++|||+.+|...+.|... ...+ .-+.||.|++++|.-..| .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 4889999999999999653 257999999999998888762 2222 346899999999988765 499
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEe-C----CCcEEEEEcCCCeeeEEee---cCceEEEEecCCCE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-G----DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR 777 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~----Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ 777 (918)
||+..+ -.++..-.-.-..|....|+|.+. +||--. . -..+.+..+.++..+++.. -....+.|...|.+
T Consensus 330 IyEtps-f~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEecCc-eeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 998765 222221122335688889999854 443211 1 2456777777776665533 23345667777776
Q ss_pred EEEEEc-------C---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC-CCCCcceE
Q 002471 778 YLAAAA-------E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG-SGSEGECV 842 (918)
Q Consensus 778 ll~~~~-------d---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~-s~~~~~~i 842 (918)
|++-.. . ..+.|+.++..........-...|...+|.|.|+.+++.+.. ++.+|.++ +......+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 665332 1 145666666654433333456788999999999966665443 79999998 44445555
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~---dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
..+. ....+.+.|+|.|.++++++- .|.+.++|..-..+. ....| ...+.+.|+|.|+|+++++.-+
T Consensus 488 k~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 488 KELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehh
Confidence 5554 356778899999999888754 579999999853332 33333 3467889999999999998644
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.5e-11 Score=135.90 Aligned_cols=232 Identities=16% Similarity=0.105 Sum_probs=159.6
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCe
Q 002471 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 661 ~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 737 (918)
.|.++|.+... ...+..+...+...+|+|||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+...+|+|+|+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccCCCCCcCCeEECCCCCE
Confidence 47777876544 45565677789999999999999887653 3689999986 332 333334445667999999998
Q ss_pred EEEEEeCCC--cEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEc-C--CeEEEEECCCceEEEEecCCCCCeEE
Q 002471 738 LICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 810 (918)
Q Consensus 738 ll~sgs~Dg--~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 810 (918)
++++.+.+| .|++||+.+++...... .......|+|++..++..+. + ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776666 68888999876544332 23455789999998887765 2 368888988876543222 2233446
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 002471 811 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 883 (918)
Q Consensus 811 i~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~ 883 (918)
..|+|||++|+..+.+ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.++ .|+++++..+..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999988776643 588999987632 222 11 11223458999999998877653 688888876665
Q ss_pred EEEcccCCCeEEEEEeCC
Q 002471 884 MTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 884 ~~~~~h~~~V~~la~spd 901 (918)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 556566677777888763
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.2e-12 Score=147.18 Aligned_cols=265 Identities=16% Similarity=0.202 Sum_probs=185.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC-C------CCCEEEEEeCCCeEEEEeC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-P------SMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs-p------dg~~Lasgs~Dg~V~Iwdl 709 (918)
|-+++.+..+-. +||++|. --.|.+||+..+..+..+... .++.++ . .+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~----~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQS----KILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhh----cccccccccccceeccceEEEEEeecceeecch
Confidence 344556666554 4666654 457999999887665544321 011111 1 2335555554443433332
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceE-------EEEecCCCEEEEEE
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAAA 782 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-------v~~sp~~~~ll~~~ 782 (918)
.. .... ...+.|....+..+.. .++....+..+.+||...+...........+ +-++++.-++++++
T Consensus 79 ~~--~~~~---~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 79 SN--QIIE---RFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred hh--hhhh---hccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc
Confidence 21 1111 2233344444444434 4456677899999999988776665543322 22344445677777
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
.-+.|.+|+.........+.+|++.|.++.|+.||++++++++| ++|+|++.+.+... ...-+|...+..++|+|+
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc-
Confidence 78999999988544444688999999999999999999999999 99999999875444 345578899999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 862 PSLLVIGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 862 ~~l~s~s~dg~I~vwd~~~~~~~~~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++++++.|.+.++|+.....+..+..|. ..|+.++..++.-.++|++.||.|++|+
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 8999999999999987766666777775 4799999999999999999999999996
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-10 Score=121.89 Aligned_cols=256 Identities=10% Similarity=0.083 Sum_probs=169.9
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEeCCCCCceeEEeccCC------
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGHS------ 723 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~~h~------ 723 (918)
++|.|.|.++++.+..+..-..+-. + ++||++.|++++. +..|.|||+.+ .+.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence 8999999999999998885444332 4 9999998887765 78899999998 55665555322
Q ss_pred -CCeeEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCC-ceE-EE
Q 002471 724 -ASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL 799 (918)
Q Consensus 724 -~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t-~~~-~~ 799 (918)
.....++++|+|+.++++--. +..|.++|+.+++.+..+..+.....+-.....+.+.+.||....+.+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 223468999999888765534 89999999999999988875443333333333333445555544433322 221 11
Q ss_pred E---ecCCCCCe-EEEEEcC-CCCEEEEEeCCeEEEEECCCCCC--cceEEEecc-------CCCceEEEEEeCCCCEEE
Q 002471 800 S---LQGHTKPI-DSVCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL 865 (918)
Q Consensus 800 ~---l~~h~~~V-~si~~sp-dg~~Las~s~d~I~iwdl~s~~~--~~~i~~~~~-------~~~~i~~i~~sp~g~~l~ 865 (918)
. +.....++ ..-.|.+ +|+++++..+++|.+.|+..... ...+..+.. ....+.-++++++++.++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 11100111 0113455 88888888888999999754321 112222111 122334489999999999
Q ss_pred EEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-cCCcEEEeC
Q 002471 866 VIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 918 (918)
Q Consensus 866 s~s~----------dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~-~Lasgs-~Dg~I~IWd 918 (918)
+... .+.|.++|..+++.+....-...+..+++++|++ +|++.+ .++.|.|+|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 8532 2489999999999996666677999999999999 777666 577788875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=135.35 Aligned_cols=231 Identities=15% Similarity=0.142 Sum_probs=155.2
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCe
Q 002471 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 661 ~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 737 (918)
.|.++|.+... ...+..+...+.+..|+|||+.|+..+.+ + .|++||+.++ .. ..+...........|+|+++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence 56777865543 34555667789999999999999877643 3 5888898863 32 222223334457899999998
Q ss_pred EEEEEeCCCc--EEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCceEEEEecCCCCCeEE
Q 002471 738 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 810 (918)
Q Consensus 738 ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 810 (918)
++++.+.+|. |++||+.+++....... ......|+|++..++..+. + ..|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8888777775 88889887765443322 3456889999998887765 3 36777888877654322 12233445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 002471 811 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 883 (918)
Q Consensus 811 i~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~ 883 (918)
.+|+|||++|+..+.+ .|.++|+.++.. .. +... .......|+|+|+.|+....++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999987776543 466678776532 11 2211 1222457999999988876553 478888866555
Q ss_pred EEEcccCCCeEEEEEeC
Q 002471 884 MTLTAHEGLIAALAVST 900 (918)
Q Consensus 884 ~~~~~h~~~V~~la~sp 900 (918)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888887
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-09 Score=115.04 Aligned_cols=263 Identities=16% Similarity=0.160 Sum_probs=186.0
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCC--Cceee--EeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEE
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDT--LKSKT--NLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW 707 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~--~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iw 707 (918)
.+.+.++-|+|+++.++|+++-.+ |.|..|.++. |+... ........-+.|++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 466789999999999999988654 7788887774 44322 22223334488999999999999987 6899999
Q ss_pred eCCCCCceeE--EeccCCCC----------eeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----e--cCceEE
Q 002471 708 DADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K--GGTAQM 769 (918)
Q Consensus 708 dl~~~~~~~~--~~~~h~~~----------V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~--~~~~~v 769 (918)
-+...+.... ....|.+. +.+..|.|+++.++++.-.-..|.+|++..++....- + .+...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9976554322 22335555 8889999998877755555578999999987654322 2 356789
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCc-eEEEEecC---------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002471 770 RFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 836 (918)
Q Consensus 770 ~~sp~~~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~---------h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~ 836 (918)
.|+|+++..++.++ +++|.+|..... ..+..+.. ...+.-.|.+++||++|+++..+ .|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999998888776 889999988763 22222211 23456788999999999998876 8888888654
Q ss_pred C-CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCcEEEE--cccCCCeEEEEE
Q 002471 837 S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNM--SENKTMTL--TAHEGLIAALAV 898 (918)
Q Consensus 837 ~-~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~vwd~--~~~~~~~~--~~h~~~V~~la~ 898 (918)
. ....+.....++..-+.+.|++++++|+++..+. .|.+|.+ .+|++..+ ........||.|
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 2 2444555555566678899999999999999875 7777755 45555422 233444556655
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-11 Score=122.22 Aligned_cols=108 Identities=23% Similarity=0.477 Sum_probs=86.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEE
Q 002471 804 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 877 (918)
Q Consensus 804 h~~~V~si~~spdg~~Las~s--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd 877 (918)
..++|.+++|+|+|+.|+++. .+ .|.+||++ ...+..+. ...+..+.|+|+|++|++++.+ |.|.|||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345699999999999766553 34 89999996 24555543 5677889999999999999854 5799999
Q ss_pred CCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec------CCcEEEeC
Q 002471 878 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 918 (918)
Q Consensus 878 ~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~------Dg~I~IWd 918 (918)
+++.+.+....|.. ++.++|+|+|++|+++.. |..++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99888886666654 789999999999999874 78888985
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-10 Score=126.74 Aligned_cols=236 Identities=16% Similarity=0.151 Sum_probs=154.5
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE---EEEeCCC--eEEEEeCCCCCceeEEeccCCCCeeEEEEcCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL---ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L---asgs~Dg--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~ 734 (918)
+.|.+.|.+.+. ...+......+.+-+|+|||+.+ ++...+| .|.+.++.++ . .+.+....+.....+|+||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~-~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-A-GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-C-ceEeecCCCCccceEECCC
Confidence 356777766544 34455556667888999999753 2443444 4777788753 2 2333334555667899999
Q ss_pred CCeEEEEEeCCC----cEEEEEcCCC---eeeEEeec---CceEEEEecCCCEEEEEEc-CCe--EEEEECCC-ceEEEE
Q 002471 735 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-ENV--VSILDAET-QACRLS 800 (918)
Q Consensus 735 ~~~ll~sgs~Dg----~I~iwdl~~~---~~~~~~~~---~~~~v~~sp~~~~ll~~~~-dg~--I~i~D~~t-~~~~~~ 800 (918)
|+.++++...+| .+.+|++..+ +....... ......|+|++..++..+. ++. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887765444 3444777653 32333322 2356799999998887764 554 55555542 233344
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 002471 801 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL 873 (918)
Q Consensus 801 l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I 873 (918)
+..+...+....|+|||+.|+..+.+ .|.+||+.+++. ..+......+....|+|||+.|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 44455667889999999988766542 699999987642 2222223456778999999988876543 479
Q ss_pred EEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 002471 874 ELWNMSENKTMTLTAHEGLIAALAVSTET 902 (918)
Q Consensus 874 ~vwd~~~~~~~~~~~h~~~V~~la~spdg 902 (918)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998877666666677788888753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=119.16 Aligned_cols=148 Identities=13% Similarity=0.278 Sum_probs=110.5
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEeCCCCCceeEEecc-CCCCeeEEEEcCCCCeEEEE-EeCCCcEEEE
Q 002471 684 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW 751 (918)
Q Consensus 684 ~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~s-gs~Dg~I~iw 751 (918)
..+.|+++|++|++-.. -+...||.++..+..+..+.- ..++|.+++|+|++..+++. |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987765433 234666666544444444433 34579999999999887544 4567899999
Q ss_pred EcCCCeeeEEee-cCceEEEEecCCCEEEEEEcC---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC--
Q 002471 752 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-- 825 (918)
Q Consensus 752 dl~~~~~~~~~~-~~~~~v~~sp~~~~ll~~~~d---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~-- 825 (918)
|++ ++.+..+. .....+.|+|+|..+++++.+ |.|.+||+++.+.+..+. | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555554 456789999999999998753 679999999988887765 3 34789999999999988763
Q ss_pred ----C-eEEEEECC
Q 002471 826 ----D-SVRVWTVG 834 (918)
Q Consensus 826 ----d-~I~iwdl~ 834 (918)
| .++||++.
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 4 78999984
|
|
| >KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-12 Score=131.68 Aligned_cols=65 Identities=32% Similarity=0.761 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCCcccCCCCCchhHHHHHHHHHHHHhhccc
Q 002471 5 NWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEK 70 (918)
Q Consensus 5 ~~~~~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~~~~~~~~~~fL~eWw~~fwdif~a~~~~~ 70 (918)
.-.|||.|..||||||++.++.++|+.|+.|-....+ ..+..+.+||.+|||||||+|.|.-.++
T Consensus 13 d~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRR 77 (354)
T KOG4594|consen 13 DSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERR 77 (354)
T ss_pred chhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCcccc
Confidence 3468999999999999999999999999999887765 6678899999999999999998865544
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-10 Score=121.51 Aligned_cols=246 Identities=13% Similarity=0.224 Sum_probs=167.4
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEE-----EeCCCeEEEEeCCCCC-
Q 002471 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLAT-----SSFDKTVRVWDADNPG- 713 (918)
Q Consensus 642 ~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Las-----gs~Dg~V~Iwdl~~~~- 713 (918)
+++.|+.|..+.|- -..+.|.+|++...+.+ .-+-|...|+.+.++|.+. .||+ .+.-+.||||.+...+
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 78999998864443 23568999998874322 2234678899999999733 3333 2445679999886311
Q ss_pred -ce--eEEeccCCCCeeEEEEcCCCCeEEEEEeC-----------CCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCE
Q 002471 714 -YS--LRTFMGHSASVMSLDFHPNKDDLICSCDG-----------DGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR 777 (918)
Q Consensus 714 -~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-----------Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ 777 (918)
.. .++|. ...=..+.|++.|..||+..+. +.+++++++...++...+ .+.+.++.|++++..
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 11 12221 2223347888887776654432 246888888855665555 468899999999988
Q ss_pred EEEEEc--CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCc
Q 002471 778 YLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 778 ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
|+++.. -..+.|||++. .+++.+ .+++-+++-|+|.|++|+.++-+ .|.|||+.+. +++..+.. ..
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a--~~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKA--AN 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhcccccc--CC
Confidence 776654 67999999874 444444 35677889999999988888766 6999999874 55555543 34
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002471 852 FHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST 900 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~------dg~I~vwd~~~~~~~~~~~h~~~V~~la~sp 900 (918)
.+-+.|+|||.+|++++. |+.|+||++....+.... .....+.+.|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~-f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM-FKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh-hhHhHhheeeee
Confidence 566899999999999986 578999998765544111 111566666654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-10 Score=130.40 Aligned_cols=219 Identities=19% Similarity=0.257 Sum_probs=143.8
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCC-C--cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCCe--EE
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHD-K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VR 705 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~D-g--~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--V~ 705 (918)
..+..+...+.+..|+|||++|+..+.+ + .|++||+.+++... +..........+|+|||+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3445567788999999999999877643 2 58889998776432 2222334457899999998865 455665 77
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeeEEe-ecC-ceEEEEecCCCEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KGG-TAQMRFQPHLGRYLAA 781 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~~-~~~v~~sp~~~~ll~~ 781 (918)
+||+.+ + .+..+..+...+...+|+|+++.+++++..++. |+++|+.+++..+.. .+. .....|+|+++.++..
T Consensus 290 ~~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 290 VVDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence 778875 3 344555566667789999999988877765554 666778777654432 222 2346899999998887
Q ss_pred EcC-C--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEE
Q 002471 782 AAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHS 854 (918)
Q Consensus 782 ~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~ 854 (918)
..+ + .|.++|+.+++... +... .......|+|||+.|+..+.+ .+++++.. + .....+....+.+..
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~ 441 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKS 441 (448)
T ss_pred EecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCC
Confidence 653 3 56678888876543 2221 122345899999977665543 36777763 2 233334444455666
Q ss_pred EEEeC
Q 002471 855 CVFHP 859 (918)
Q Consensus 855 i~~sp 859 (918)
.+|+|
T Consensus 442 p~Wsp 446 (448)
T PRK04792 442 PAWSP 446 (448)
T ss_pred CccCC
Confidence 67766
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.3e-10 Score=127.97 Aligned_cols=203 Identities=16% Similarity=0.232 Sum_probs=144.3
Q ss_pred CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeeEE--eecCceEEEEecCCCE
Q 002471 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGR 777 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~ 777 (918)
..|.++|... ...+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++.... +.+....+.|+|++..
T Consensus 170 ~~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 3577888753 33455666777899999999999877665433 5799999998754433 3345567899999988
Q ss_pred EEEEEc-CC--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCC
Q 002471 778 YLAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 778 ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
+++... ++ .|++||+.++.... +..+........|+|||+.|+.++.. .|++||+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 33 68999998875433 34444555678999999987766543 58888887653 223333455
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
.+..+.|+|++++|+.++.++ .|.+||+.++....+... ......+|+|++++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 667889999999999988876 899999988766544432 2345678999999888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-10 Score=129.29 Aligned_cols=220 Identities=19% Similarity=0.217 Sum_probs=147.7
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCC--eE
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDK--TV 704 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg--~V 704 (918)
...+..+...+...+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.|+.. +.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34556677889999999999999877644 368999998876543 33334456678999999988754 4455 58
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEee-c-CceEEEEecCCCEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA 780 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~-~-~~~~v~~sp~~~~ll~ 780 (918)
++||+.+ +. ...+..+...+....|+|+++.++++...+| .|+++|+.+++...... + ......|+|+++.++.
T Consensus 270 y~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8889886 33 3445556666777899999998887765554 57778887776544322 2 2334689999999888
Q ss_pred EEcC-C--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 781 AAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 781 ~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
...+ + .|.+||+.+++...... ........|+|||++|+..+.+ .|.++++... ....+....+.+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~ 421 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR 421 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence 7753 3 58889998876543222 2223356899999977766543 4677777432 2223333344555
Q ss_pred EEEEeC
Q 002471 854 SCVFHP 859 (918)
Q Consensus 854 ~i~~sp 859 (918)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 566665
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=132.76 Aligned_cols=278 Identities=18% Similarity=0.215 Sum_probs=190.3
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-------CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
....+.||...|+.++--.+.+.+++++.|++|++|.++ +..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345678999999999988888899999999999999976 234667888999999999999998888765 78
Q ss_pred eEEEEeCCCCCceeE-Eec-cCCCCeeEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEee--------cCceEEE
Q 002471 703 TVRVWDADNPGYSLR-TFM-GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMR 770 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~-~~~-~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------~~~~~v~ 770 (918)
-|.+||.-- +..+. ... ...+.+..|...++ ...+++.|+...+|+++|.+..+.+..++ +-+.+++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 899999865 33332 111 12233333433343 33355556889999999999887655543 2356788
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE-EECCCCCCcceEEEeccC
Q 002471 771 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSCN 848 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~i-wdl~s~~~~~~i~~~~~~ 848 (918)
+.+.|++++++-..|.|.+.|.++|+.+...+.-+.....++ .|....|+....| ++.| |...++ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 999999999999999999999999998887665444443333 2455566666666 7777 876544 111111111
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-C------cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-N------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~-~------~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
..+.. -.-.-|..+++......+.||.-.. . ..++-....+..++++.-|-+.-+..|+..|.|.+
T Consensus 960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11111 1122456677777777888884321 1 11222345577888888887777778888898876
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6e-10 Score=123.93 Aligned_cols=184 Identities=18% Similarity=0.281 Sum_probs=145.6
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEecc---CCCCeEEEEE------CC--------------CCCEEEEEeCCCeE
Q 002471 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRF------SP--------------SMPRLATSSFDKTV 704 (918)
Q Consensus 648 pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~---h~~~V~~l~f------sp--------------dg~~Lasgs~Dg~V 704 (918)
+-..++|....||.++|||+.+++....|.. -++..++..| +| +-..|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4557999999999999999998887766642 2344455554 12 33467888889999
Q ss_pred EEEeCCCCCceeEEec--cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEE
Q 002471 705 RVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 779 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~--~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll 779 (918)
.+|++.. +.....+. +|.+.|.++.++.+-. .|.+++.|+.|.+|+...+..++.+++ ....+++++|++.++
T Consensus 83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecC-CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999987 44444444 6999999999887644 567999999999999999998888875 456789999988877
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC-----CCEEEEEeCC--eEEEEECCC
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSED--SVRVWTVGS 835 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-----g~~Las~s~d--~I~iwdl~s 835 (918)
+++ +.|++||+++++.+..|.+|.++|+++.|..+ |.+|.++... .|.+|-++.
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 665 68999999999999999999999999999876 7766665433 678887765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-10 Score=125.66 Aligned_cols=274 Identities=18% Similarity=0.271 Sum_probs=196.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---------------eeeEeccCCCCeEEEEECCCCCEEEEEeCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---------------SKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~---------------~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 701 (918)
......|++|+....+||+|+.||.++|..+.+.. .-.++.+|+..|.-+.|+.+...|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34568999999999999999999999999876321 123577999999999999999999999999
Q ss_pred CeEEEEeCCCCCceeEEec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-Eeec-CceEEEEecCCCEE
Q 002471 702 KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKG-GTAQMRFQPHLGRY 778 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~-~~~~v~~sp~~~~l 778 (918)
|.|.||-+..+..+-..+. ...+.|.+++|..+|..+ +....||.|.+=.++..+.-. .+++ ....+.|++|...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 9999999887443322222 245678999999998765 477889999887776544322 2333 23467899999999
Q ss_pred EEEEcCCeEEEEECCCc-------eEEEE----ecCCCCCeEEEEEc--------CCCCEEEEEeCC-eEEEEECCCCCC
Q 002471 779 LAAAAENVVSILDAETQ-------ACRLS----LQGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSE 838 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t~-------~~~~~----l~~h~~~V~si~~s--------pdg~~Las~s~d-~I~iwdl~s~~~ 838 (918)
+.+-..|.+.+||.... .+... +......|-.++|. ||...|+++..+ .+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99989999999997642 12111 11223346667764 466778887776 777765544433
Q ss_pred cceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002471 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 839 ~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---------~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs 909 (918)
...+.+ +-.+..+.|+++|..|++++.+. .|.+|..-..-.-++......|++++|--.|-.++.+
T Consensus 252 Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 322222 46788899999999999998752 5777766555455777888899999998777777665
Q ss_pred cCCcEEE
Q 002471 910 HDKFVKL 916 (918)
Q Consensus 910 ~Dg~I~I 916 (918)
.|+.|++
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4666654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=115.99 Aligned_cols=240 Identities=18% Similarity=0.209 Sum_probs=167.7
Q ss_pred CCCCeEEEEEcc---CCC-EEEEEeCCCcEEEEECCCCceeeEeccCC------CCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 637 STSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 637 H~~~V~~l~fsp---dg~-~Latgs~Dg~V~iwd~~~~~~~~~l~~h~------~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
.+..+..+.|.. +|. .|+-+..+|.|.+|..........+++-+ ....++.|++.+..++++-.+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 345566677754 444 56777788999999876555444444321 13567889999999999999999985
Q ss_pred EeCCCC-CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecCceEEEEecCCCEEEEEEcC
Q 002471 707 WDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 707 wdl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~v~~sp~~~~ll~~~~d 784 (918)
-+.... -+.+..++.|...++...|+....+++++|++|+.+..||++..+ ++..
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~----------------------- 204 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH----------------------- 204 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee-----------------------
Confidence 554431 122347889999999999999888999999999999999998322 1110
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
..+.|...|.+|.-+| .+.+|++|+.| .|++||.|+-. +.+..-.. .+.|+.+.++|.-.
T Consensus 205 ---------------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~v-~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 205 ---------------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAKV-GGGVWRIKHHPEIF 266 (339)
T ss_pred ---------------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCcc-ccceEEEEecchhh
Confidence 0133778888888877 46699999999 99999998543 33333222 47899999998643
Q ss_pred -EEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCCEEEEEe-cCCcEE-Ee
Q 002471 863 -SLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETGYVASAS-HDKFVK-LW 917 (918)
Q Consensus 863 -~l~s~s~dg~I~vwd~~~~~~~------~~~~h~~~V~~la~spdg~~Lasgs-~Dg~I~-IW 917 (918)
.+++++..+..+|-++..+... ....|.+-++.-.|.....+|+||+ .|+.|+ +|
T Consensus 267 ~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 267 HRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 3444455555666666544322 4557888888888865556788876 577755 77
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-08 Score=110.86 Aligned_cols=248 Identities=11% Similarity=0.101 Sum_probs=155.2
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEECCCCceeeEeccCC-------CCeEEEEEC
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHS-------SLITDVRFS 689 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~----------Dg~V~iwd~~~~~~~~~l~~h~-------~~V~~l~fs 689 (918)
+.+.+..+.....+-. + +||||+.|+++.. +..|.|||+.+++.+..+.... .....++++
T Consensus 36 ~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 4555666664443333 4 9999998888765 7899999999999998887432 234478999
Q ss_pred CCCCEEEEEe-C-CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC-Cee-e---EEe
Q 002471 690 PSMPRLATSS-F-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC-T---RVF 762 (918)
Q Consensus 690 pdg~~Lasgs-~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~-~---~~~ 762 (918)
|||++|++.. . +..|.|+|+.+ ++.+..+.-.. ...-+..++. .+++ -+.||......+.. ++. . ..|
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp~-~~~vy~t~e~-~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVPD-CYHIFPTAND-TFFM--HCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCCC-CcEEEEecCC-ccEE--EeecCceEEEEecCCCceEEeeeeee
Confidence 9999999876 3 78999999998 55555554321 1111222211 2111 12244444433322 110 1 111
Q ss_pred ecCc----eEEEEecCCCEEEEEEcCCeEEEEECCCc-----eEEEEecC-------CCCCeEEEEEcCCCCEEEEEe--
Q 002471 763 KGGT----AQMRFQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQG-------HTKPIDSVCWDPSGELLASVS-- 824 (918)
Q Consensus 763 ~~~~----~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~-------h~~~V~si~~spdg~~Las~s-- 824 (918)
.... ..-.|.+.++..+..+.+|.|++.|+... +....+.. ....+.-++++++++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1100 00134553344444555599999995443 33322221 223344599999999777642
Q ss_pred --------C-CeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEE
Q 002471 825 --------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMT 885 (918)
Q Consensus 825 --------~-d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~-~l~s~s-~dg~I~vwd~~~~~~~~ 885 (918)
. +.|.++|..+. +.+..+.. +..+..+++++|++ +|++.. .++.|.++|..+++.+.
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 1 37999999877 55555544 56899999999999 887776 46789999999998874
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-09 Score=125.21 Aligned_cols=212 Identities=12% Similarity=0.115 Sum_probs=138.4
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCe--EEEEEeCCC--cEEEEEcCCCeee--EEeecCceEEEEecCCC
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSCT--RVFKGGTAQMRFQPHLG 776 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~--ll~sgs~Dg--~I~iwdl~~~~~~--~~~~~~~~~v~~sp~~~ 776 (918)
.|.+.|.+. ...+.+......+.+-+|+|||.. ++++...+| .|++.++.+++.. ..+.+......|+|++.
T Consensus 166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 566666653 334555555666778899999876 333554444 5888888877543 34556666789999999
Q ss_pred EEEEEEc-CC----eEEEEECCCc---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCCCcceEEE
Q 002471 777 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE 844 (918)
Q Consensus 777 ~ll~~~~-dg----~I~i~D~~t~---~~~~~l~~h~~~V~si~~spdg~~Las~s~-d---~I~iwdl~s~~~~~~i~~ 844 (918)
.++.... +| .+.+|++..+ +...............+|+|||+.|+..+. + .|.++++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887764 22 3444676652 333333333334567899999997776663 2 35555554221 12233
Q ss_pred eccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec-C--CcEEEeC
Q 002471 845 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLWK 918 (918)
Q Consensus 845 ~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~-D--g~I~IWd 918 (918)
+......+....|+|||++|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|.+||
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 33344566788999999999887654 3799999999988766655567788999999998875443 2 3455543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.9e-09 Score=117.28 Aligned_cols=253 Identities=13% Similarity=0.057 Sum_probs=161.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEE-EEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCe-
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD-VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV- 726 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~-l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V- 726 (918)
++..+++++.++.|+.||.++++.+........ +.+ ..+ .+..++.++.+|.|+.||.++ ++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCcee
Confidence 466888888999999999999998877654322 221 111 345777788899999999987 44444443222111
Q ss_pred ----eEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc----e------EEE--EecCCCEEEEEEcCCeEEEE
Q 002471 727 ----MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 727 ----~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~--~sp~~~~ll~~~~dg~I~i~ 790 (918)
.+..+. ++ .++.+..+|.|..+|+++++.+....... . .+. ....++.+++++.++.++.|
T Consensus 180 ~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 180 LRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred ecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 111122 23 45578888999999999998765543110 0 000 11135788888899999999
Q ss_pred ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCCEEEEEE
Q 002471 791 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 791 D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g~~l~s~s 868 (918)
|.++++.+...... ....... ++..|++++.+ .|..+|..+++ .+...... ...+..... .+..|++++
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEEEe
Confidence 99999888766521 1222222 35566666666 99999998773 33322111 111222222 456899999
Q ss_pred cCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 869 CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 869 ~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+|.|++||..+++.+ .+..+...+..--...++ .|+.++.||.|+.|+
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEeC
Confidence 9999999999999988 555455443332222333 578889999998874
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-09 Score=117.01 Aligned_cols=274 Identities=15% Similarity=0.182 Sum_probs=190.8
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC---------
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--------- 702 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--------- 702 (918)
..+..-..++..++|||.|++|++.... .|.+|+-..+..+..+. ...|..+.|+|+++||.+-+...
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred ccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccC
Confidence 3344466789999999999999987654 58999988766555554 34599999999999999976544
Q ss_pred ------eEEEEeCCCCCceeEEeccCCCC--ee-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEee-cCceE
Q 002471 703 ------TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQ 768 (918)
Q Consensus 703 ------~V~Iwdl~~~~~~~~~~~~h~~~--V~-sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~-~~~~~ 768 (918)
.+.|||+.+ +..+..+.....+ .+ -+.|+-++.+.+-. -...|+|+++ +... .+.++ .++..
T Consensus 103 p~~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 103 PFTSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred CccccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceee
Confidence 499999998 7778888776665 55 67788775543322 2457999997 3321 22233 46677
Q ss_pred EEEecCCC--EEEEE-----EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEe------------CCeEE
Q 002471 769 MRFQPHLG--RYLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS------------EDSVR 829 (918)
Q Consensus 769 v~~sp~~~--~ll~~-----~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s------------~d~I~ 829 (918)
..|+|.++ .|++- ...+.++||.+..+..+.+..-....-..+.|.+.|++|++-- +..++
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 77888743 23332 2367899999887766654433333445788999998665321 12578
Q ss_pred EEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002471 830 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG--CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 907 (918)
Q Consensus 830 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s--~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Las 907 (918)
|+++... .+.......++|+.++|.|.++.+++++ ..-.+.++|++.+ +.+......=+.+.|+|.+++++.
T Consensus 259 l~~~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 259 LLRITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILF 332 (561)
T ss_pred EEeeccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEE
Confidence 8888632 2222224478999999999998888776 4458999999888 555556666677888999998888
Q ss_pred EecC---CcEEEeC
Q 002471 908 ASHD---KFVKLWK 918 (918)
Q Consensus 908 gs~D---g~I~IWd 918 (918)
++-| |.|.|||
T Consensus 333 agF~nl~gni~i~~ 346 (561)
T COG5354 333 AGFDNLQGNIEIFD 346 (561)
T ss_pred ecCCccccceEEec
Confidence 7765 5677775
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-10 Score=113.66 Aligned_cols=197 Identities=22% Similarity=0.253 Sum_probs=145.6
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~--~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
...++.|++.+..++++..+|.+.+-+........ +++.|.-.++...|+. +.+++++|++|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45688899999999999999999966655544444 8899999999999987 45688999999999999999655555
Q ss_pred EE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE--eecCceEEEEecCC-CEEEEEEcCCeEEEEE
Q 002471 717 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHL-GRYLAAAAENVVSILD 791 (918)
Q Consensus 717 ~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~--~~~~~~~v~~sp~~-~~ll~~~~dg~I~i~D 791 (918)
.. .+-|...|.+|.-+|....+|++|+.|-.|++||.++ ++.+.. ..+++-.+.++|.. ..+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 44 6679999999999998888999999999999999994 454443 34677778887765 3455666666667776
Q ss_pred CCCc--e---EEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEE-EEECCCC
Q 002471 792 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVR-VWTVGSG 836 (918)
Q Consensus 792 ~~t~--~---~~~~l~~h~~~V~si~~spdg~~Las~s-~d-~I~-iwdl~s~ 836 (918)
...+ + .....+.|.+-+..-.|.....+|++|+ .| .|+ +|-..++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 6554 2 3344556777677777755545788765 33 434 6654443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-08 Score=104.29 Aligned_cols=259 Identities=11% Similarity=0.110 Sum_probs=177.2
Q ss_pred CCcEEEEECCCCce-e--eEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCCceeEEec---cCCCCeeEE
Q 002471 659 DKKAVLWHTDTLKS-K--TNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFM---GHSASVMSL 729 (918)
Q Consensus 659 Dg~V~iwd~~~~~~-~--~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~---~h~~~V~sl 729 (918)
+.-|++|++++..- + ..+-.+...++-|+|+++.++|+++.. +|.|..|.++.....+..+. ....+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46799999873221 1 122346778999999999999998855 57888888875322222221 122333779
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e--e----------cCceEEEEecCCCEEEEEEc-CCeEEEEEC
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F--K----------GGTAQMRFQPHLGRYLAAAA-ENVVSILDA 792 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~--~----------~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~ 792 (918)
++++++..++++-..-|.|.++-+.. |..... + . .+.....+.|++.++++..- ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 432221 1 1 12456779999988888775 578999999
Q ss_pred CCceEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEecc------CCCceEEEEEeCC
Q 002471 793 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT 860 (918)
Q Consensus 793 ~t~~~~~~l~---~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~-~~~~~i~~~~~------~~~~i~~i~~sp~ 860 (918)
..++....-. .....-+.|.|+|++++..+.++= +|.+|..... .+.+.+..+.. ...+...|..+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775433211 234567899999999988777754 9999998774 23333333221 2445678889999
Q ss_pred CCEEEEEEcC-CeEEEEECCC--CcEE---EEcccCCCeEEEEEeCCCCEEEEEecC-CcEEEe
Q 002471 861 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 917 (918)
Q Consensus 861 g~~l~s~s~d-g~I~vwd~~~--~~~~---~~~~h~~~V~~la~spdg~~Lasgs~D-g~I~IW 917 (918)
|++|+++... +.|.+|.+.. +++. ....+...-+.+.|++.+++|++++.| ..|.||
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9999988654 3788887654 4433 223344558899999999999998865 356665
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-10 Score=115.05 Aligned_cols=238 Identities=18% Similarity=0.269 Sum_probs=154.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc----eeEEeccCC------------CCeeEEEEcCCCCe-EEEE
Q 002471 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHS------------ASVMSLDFHPNKDD-LICS 741 (918)
Q Consensus 679 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~----~~~~~~~h~------------~~V~sl~fsp~~~~-ll~s 741 (918)
..+.|.+|.|...|.+||||..+|.|.+|.-+.... ....+..|. ..|..|.|.++++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 346789999999999999999999999997654332 222333333 46888999887542 3446
Q ss_pred EeCCCcEEEEEcCCCee-----------------------------------eEEee----cCceEEEEecCCCEEEEEE
Q 002471 742 CDGDGEIRYWSINNGSC-----------------------------------TRVFK----GGTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 742 gs~Dg~I~iwdl~~~~~-----------------------------------~~~~~----~~~~~v~~sp~~~~ll~~~ 782 (918)
...|.+|++|.+..... .+.+. -++.++.++.+...++ .+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 77899999999864321 11111 1344556666655444 45
Q ss_pred cCCeEEEEECCCceEEEE---ecCC-----CCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCC-------------c
Q 002471 783 AENVVSILDAETQACRLS---LQGH-----TKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSE-------------G 839 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~---l~~h-----~~~V~si~~spdg~--~Las~s~d~I~iwdl~s~~~-------------~ 839 (918)
.|=.|.+|.++-....+. ++.+ ...|++..|+|... ++++.+.++|++.|++.... .
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 677899998875432222 2222 24588999999543 44445555999999984311 0
Q ss_pred ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-CCcEE-EEcccC------------CCe---EEEEEeCCC
Q 002471 840 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-ENKTM-TLTAHE------------GLI---AALAVSTET 902 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~-~~~~~-~~~~h~------------~~V---~~la~spdg 902 (918)
.....+..-...|..+.|+.+|+|+++-. .-+|+|||+. ..+.+ ++..|. +.| ..++|+-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11111222234578899999999887643 3589999983 33333 444443 222 457899999
Q ss_pred CEEEEEecCCcEEEeC
Q 002471 903 GYVASASHDKFVKLWK 918 (918)
Q Consensus 903 ~~Lasgs~Dg~I~IWd 918 (918)
.+++||+....+++|+
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999999999885
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.3e-10 Score=132.00 Aligned_cols=198 Identities=17% Similarity=0.268 Sum_probs=153.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC----eEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~----V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
.+.|....+..+.+.++.++.+..+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344555666778889999999999999998877666555432221 2223346667789999999999999998534
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
..+ .+.+|.+.|.++.|+-+|. +++++++|.+||+|++++.+...
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~--------------------------------- 211 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLG--------------------------------- 211 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccC---------------------------------
Confidence 444 6889999999999999876 55699999999999999876443
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC-CceEEEEEeCCCCEEEEEEcCC
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~-~~i~~i~~sp~g~~l~s~s~dg 871 (918)
....+|...|..++|.|+ .++++++| +.++|+... ..+..+..|. ..+..++.+++...+++++.|+
T Consensus 212 -----~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~----~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 212 -----CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG----TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred -----cccccccceeEEEEeccc--eeEEeccceEEEEEeccc----ceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence 112468899999999988 99999999 999996643 3344555554 4589999999999999999999
Q ss_pred eEEEEECCCC
Q 002471 872 SLELWNMSEN 881 (918)
Q Consensus 872 ~I~vwd~~~~ 881 (918)
.+++||+...
T Consensus 281 ~lk~~~l~~r 290 (967)
T KOG0974|consen 281 TLKLWDLNGR 290 (967)
T ss_pred chhhhhhhcc
Confidence 9999998653
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=130.94 Aligned_cols=278 Identities=15% Similarity=0.297 Sum_probs=193.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeeEec-cCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeCCCC-
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLE-EHSSLITDVRFSPSM--PRLATSSFDKTVRVWDADNP- 712 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~-~~~~~~l~-~h~~~V~~l~fspdg--~~Lasgs~Dg~V~Iwdl~~~- 712 (918)
.+.+.++..+|.|+-+|.++.-| +.+.|++. +...+-+. ...-.|-++.|++.. .+-++......-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45688899999999999998776 45566663 33333332 123347788888743 34444444555678988642
Q ss_pred -CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEE---eecCceEEEEecCCCEEEEEEcCCeE
Q 002471 713 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV---FKGGTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 713 -~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~---~~~~~~~v~~sp~~~~ll~~~~dg~I 787 (918)
...-..+.+|...|+.+.|+|....++++|+.|-.|..||+++... +.. .......+.|+-....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 2344567789999999999999999999999999999999998643 222 23466789999999999999999999
Q ss_pred EEEECCCc-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 788 SILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 788 ~i~D~~t~-~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
.+||.+.+ .++..+++|...|..+.|..-- ..+.+++.| +|++||...... .-........+|..-.+.|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence 99999986 6788899999999999987633 256667777 999999975422 111122234566666666655433
Q ss_pred EEEE--cCCeEEE---------EECCCCc-EE-EEcccCCCeEEEEEeCCC--------C--EEEEEecCCcEEEeC
Q 002471 865 LVIG--CYQSLEL---------WNMSENK-TM-TLTAHEGLIAALAVSTET--------G--YVASASHDKFVKLWK 918 (918)
Q Consensus 865 ~s~s--~dg~I~v---------wd~~~~~-~~-~~~~h~~~V~~la~spdg--------~--~Lasgs~Dg~I~IWd 918 (918)
++-- .+..|.+ |++.++. .+ ++.+|++.|...-|-..+ + .|+|-+.|..+|+|.
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 3221 1223333 4443332 23 889999998877664321 1 599999999999994
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-08 Score=114.16 Aligned_cols=253 Identities=15% Similarity=0.106 Sum_probs=160.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 728 (918)
.+..|++++.+|.|..+|..+++.+..+.........+.. ++..+++++.++.|..+|..+ ++.+..... ...+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~-~~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKL-SSEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeecc-Cceeec
Confidence 3668888989999999999999988777654432223332 467888899999999999987 444443332 222222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEE------ecCCCEEEEEEcCCeEEEEECCCceEEEEec
Q 002471 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF------QPHLGRYLAAAAENVVSILDAETQACRLSLQ 802 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~------sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 802 (918)
.-.. .++.+ +.++.+|.|+.||.++++.+..+......+.+ .-.++.++++..++.+..+|.++++.+....
T Consensus 140 ~p~v-~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 140 PPLV-ANGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CCEE-ECCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 1111 13444 46777999999999999988776543211100 0123577788888999999999998776543
Q ss_pred CCCC----C------e-EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002471 803 GHTK----P------I-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 803 ~h~~----~------V-~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d 870 (918)
.... . + .+..+ .+..+++++.+ .++.||..+++ .+..... ....... ..+..+++++.+
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~--~~~~~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR---VLWKRDA--SSYQGPA--VDDNRLYVTDAD 288 (377)
T ss_pred cccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc---EEEeecc--CCccCce--EeCCEEEEECCC
Confidence 2100 0 1 11112 24456666656 99999998873 3333321 1111122 346678888999
Q ss_pred CeEEEEECCCCcEEE-EcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 871 QSLELWNMSENKTMT-LTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 871 g~I~vwd~~~~~~~~-~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.|+.+|..+++.+. ..... ..+.+..+ .+.+|++++.||.|++||
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999998773 21211 12222222 356888899999998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.2e-10 Score=122.48 Aligned_cols=204 Identities=16% Similarity=0.223 Sum_probs=145.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecCceE
Q 002471 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQ 768 (918)
Q Consensus 690 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~ 768 (918)
+...++|....||.+||||... +.....|. |. +..+..++...|.+.-+. +.+.. .-...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~------------p~-----~~~s~t~~~~~w~L~~~~s~~k~~-~~~~~ 63 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFA------------PI-----ASLSGTCTYTKWGLSADYSPMKWL-SLEKA 63 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeec------------cc-----hhccCcceeEEEEEEeccchHHHH-hHHHH
Confidence 3456889999999999999986 33222222 11 111112333333321111 10000 00000
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 845 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~ 845 (918)
...+.+...++.|...|.|.+|++..++....+. +|.+.|.++.++.+-..|.+++.| .+..|+.... ..+..+
T Consensus 64 ~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~~~~ 140 (541)
T KOG4547|consen 64 KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VIIRIW 140 (541)
T ss_pred hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eeeeee
Confidence 1122333456777788999999999999888876 599999999999988899999999 9999999765 677788
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC-----CCEEEE-EecCCcEEEe
Q 002471 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVAS-ASHDKFVKLW 917 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spd-----g~~Las-gs~Dg~I~IW 917 (918)
.+....+.+++++||+..+++++ +.|++||+++++++ .+.+|.++|+++.|..+ |.++.+ +..+..|.+|
T Consensus 141 ~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 141 KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 88888899999999999888877 68999999999988 89999999999999877 666554 4455667777
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-08 Score=123.13 Aligned_cols=279 Identities=15% Similarity=0.214 Sum_probs=184.4
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEE----ECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iw----d~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
...+.|.++.|-++...|+.+..+|.|.++ +..+. .+.....-...|.|++||||+..|+..+.+++|.+.+.+=
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 456789999999999999999999999999 44332 2333334567899999999999999999999888764320
Q ss_pred ------------CC--cee--------E-------------------------EeccCCCCeeEEEEcCCCCeEEEEEe-
Q 002471 712 ------------PG--YSL--------R-------------------------TFMGHSASVMSLDFHPNKDDLICSCD- 743 (918)
Q Consensus 712 ------------~~--~~~--------~-------------------------~~~~h~~~V~sl~fsp~~~~ll~sgs- 743 (918)
.+ +.+ . .+. +...-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 00 000 0 011 2334567999999887665543
Q ss_pred -CC---CcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEc---CCeEEEEECCCc---eEEEEecCCCCCeEE
Q 002471 744 -GD---GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQ---ACRLSLQGHTKPIDS 810 (918)
Q Consensus 744 -~D---g~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~---dg~I~i~D~~t~---~~~~~l~~h~~~V~s 810 (918)
.+ ..||||+-+ |....+.+ +-...++|.|.|+.+++.-. ...|.+|+-+.. +....+......|..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 22 579999976 55444332 23457899999988877765 235666654322 222222234567999
Q ss_pred EEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEC----CCC---
Q 002471 811 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPS-LLVIGCYQSLELWNM----SEN--- 881 (918)
Q Consensus 811 i~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g~~-l~s~s~dg~I~vwd~----~~~--- 881 (918)
+.|++|+.+|+....|.|.+|...+.. .....++... ...+..+.|+|...+ |.+.+.++.+..+++ ..+
T Consensus 310 l~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 999999999999988899999986642 2222333322 233445889986544 555555565544332 211
Q ss_pred ------cEEEE-----------------------cccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 882 ------KTMTL-----------------------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 ------~~~~~-----------------------~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
....+ ......|.+++|++++..+++-..||.|.+|+
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 11011 11457899999999998899999999999884
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-08 Score=106.75 Aligned_cols=283 Identities=14% Similarity=0.137 Sum_probs=186.7
Q ss_pred CCcccccccCc-cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCC
Q 002471 616 GGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMP 693 (918)
Q Consensus 616 ~~~~~d~~~~~-s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fspdg~ 693 (918)
.++.|-...+- +|+.+..+.+|-..-.-+ .++..+....||.=.||.++ .++-++...... .-.+-..+.||+
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~vS~PmIV----~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsDGk 279 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNVSSPMIV----GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSDGK 279 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCcCCceEE----cceEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCCCc
Confidence 34555554443 778888887775433222 23344445567666666554 333222221111 122333456888
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeEEec-----cC-----CCCeeEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLRTFM-----GH-----SASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~-----~h-----~~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 762 (918)
.|+... .|.|.+||.++.......+. .. ..++.-+. |++-...+++..+ -|...|.+...+-.+..-
T Consensus 280 rIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~ 357 (668)
T COG4946 280 RIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVG 357 (668)
T ss_pred EEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcC
Confidence 877653 57799999987432211111 00 01111122 4444445665555 678888887766555443
Q ss_pred -ecCceEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc
Q 002471 763 -KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 839 (918)
Q Consensus 763 -~~~~~~v~~sp~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~ 839 (918)
++++.-..+..+...++.+..|| .|-|||.++++.... ...-+.|.++..+++|++++++.+. .|-++|+.++.
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn-- 434 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-- 434 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC--
Confidence 34566666777777888898888 899999998875543 4456789999999999999988888 99999998873
Q ss_pred ceEEEeccCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002471 840 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg----~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs 909 (918)
....-....+-|+.+.|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|..-+
T Consensus 435 -v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 -VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 2233334467799999999999999987776 79999999999987777666677889999999877544
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=112.05 Aligned_cols=238 Identities=17% Similarity=0.319 Sum_probs=162.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccCC------------CCeEEEEECCCCC--EEEE
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS------------SLITDVRFSPSMP--RLAT 697 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-----~~~~l~~h~------------~~V~~l~fspdg~--~Las 697 (918)
..+.|++|.|...|.||++|...|.|.+|.-+..+ ....|.+|. ..|..|.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765322 223344443 3578888887543 5677
Q ss_pred EeCCCeEEEEeCCCC------------------Cc-----------------------eeEEe-ccCCCCeeEEEEcCCC
Q 002471 698 SSFDKTVRVWDADNP------------------GY-----------------------SLRTF-MGHSASVMSLDFHPNK 735 (918)
Q Consensus 698 gs~Dg~V~Iwdl~~~------------------~~-----------------------~~~~~-~~h~~~V~sl~fsp~~ 735 (918)
.+.|++|++|.+... +. +.+.+ ..|..-|.+|.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999988642 00 01122 3577788999999887
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeeE---Eee--------cCceEEEEecCC-CEEEEEEcCCeEEEEECCCceE------
Q 002471 736 DDLICSCDGDGEIRYWSINNGSCTR---VFK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC------ 797 (918)
Q Consensus 736 ~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~--------~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~------ 797 (918)
..+| + ..|-.|.+|+++...-.. .++ .-+++..|+|.. ..+...++.|.|++.|++....
T Consensus 185 et~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 6655 4 458899999987542111 111 123556788765 4566777899999999984311
Q ss_pred EE----------EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCC------------Cce---
Q 002471 798 RL----------SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NKF--- 852 (918)
Q Consensus 798 ~~----------~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~------------~~i--- 852 (918)
+. -+.+-...|..+.|+++|+++++-+.-+|+|||++..+ .++.++..|. ..|
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeee
Confidence 11 11223356788999999999998888899999998754 4455543321 112
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
..|.|+-+.+.+++|+..+..-||-.
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEEecCCcccccccccccceeeecc
Confidence 35678888888888887776666653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-08 Score=123.33 Aligned_cols=232 Identities=11% Similarity=0.102 Sum_probs=154.7
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEeCCCCCceeEEecc--C------------CCCeeEEEEcCCCCeEEEEEeCCCcE
Q 002471 684 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--H------------SASVMSLDFHPNKDDLICSCDGDGEI 748 (918)
Q Consensus 684 ~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~--h------------~~~V~sl~fsp~~~~ll~sgs~Dg~I 748 (918)
..++++++ +.++++-+.++.|++||... ..+..+.+ . -.....|++.++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788774 55666667788999999864 33333322 1 12357799998877666565566889
Q ss_pred EEEEcCCCeeeEEee-------------------cCceEEEEecCCCEEEEE-EcCCeEEEEECCCceEEEEecCC----
Q 002471 749 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGH---- 804 (918)
Q Consensus 749 ~iwdl~~~~~~~~~~-------------------~~~~~v~~sp~~~~ll~~-~~dg~I~i~D~~t~~~~~~l~~h---- 804 (918)
+++|+.++....... .....++++++++.++++ ..++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999988765332211 122458899966655544 557899999998875432 1110
Q ss_pred -----------CCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceE----------EEecc--------CCCceE
Q 002471 805 -----------TKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECV----------HELSC--------NGNKFH 853 (918)
Q Consensus 805 -----------~~~V~si~~spdg~~Las~s-~d-~I~iwdl~s~~~~~~i----------~~~~~--------~~~~i~ 853 (918)
-.....|+|+|++..|+++. .+ .|++||+.++...... ..+.. ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345799999998555444 44 9999999865321100 00000 011245
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc--------------CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH--------------EGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h--------------~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.++++++|..+++-..++.|++||..++.+..+.+. -.....|+++++|+++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 789999999878888888999999998887654432 12577899999999888888999999996
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-08 Score=121.91 Aligned_cols=239 Identities=13% Similarity=0.149 Sum_probs=159.9
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEECCCCceeeEecc-C-------------CCCeEEEEECCCCCEEEEEeC-CCeEE
Q 002471 642 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-H-------------SSLITDVRFSPSMPRLATSSF-DKTVR 705 (918)
Q Consensus 642 ~~l~fspd-g~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h-------------~~~V~~l~fspdg~~Lasgs~-Dg~V~ 705 (918)
..++++++ +.++++-..++.|++||... ..+..+.+ . -.....|+|.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 55666667788999999764 44433332 1 123578999998887766654 57899
Q ss_pred EEeCCCCCceeEEeccC-----------------CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----
Q 002471 706 VWDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 763 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h-----------------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----- 763 (918)
++|+.+ + .+.++.+- -..-++|+|+|+++.++++...++.|++||..++.......
T Consensus 650 ~id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999876 2 34443221 11235799999777788788889999999998775432110
Q ss_pred ------------cCceEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEecC-------------C--------CCCeE
Q 002471 764 ------------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPID 809 (918)
Q Consensus 764 ------------~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~-------------h--------~~~V~ 809 (918)
.....++++++++.++++.. ++.|++||+.++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12245889999886665554 68999999987653221100 0 01235
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE----------eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 810 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE----------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 810 si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~----------~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
.++|+++|.++++-..+ +|++||..++........ ....-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999987777777 999999976522111100 0111234678899999998888788899999999
Q ss_pred CCCcE
Q 002471 879 SENKT 883 (918)
Q Consensus 879 ~~~~~ 883 (918)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-08 Score=108.27 Aligned_cols=269 Identities=14% Similarity=0.192 Sum_probs=182.7
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEeC
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWDA 709 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----------Dg~V~Iwdl 709 (918)
-+-+.|||.|.||+|-..- -|.+|--++...+..|. |. .|.-+.|||+.+||+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4668999999999998655 58899877776666665 43 4889999999999999753 257999999
Q ss_pred CCCCceeEEeccC--CCCe-eEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--ee-cCceEEEEecCCCEEEEEEc
Q 002471 710 DNPGYSLRTFMGH--SASV-MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK-GGTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 710 ~~~~~~~~~~~~h--~~~V-~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~-~~~~~v~~sp~~~~ll~~~~ 783 (918)
.+ +...+.|... ...+ .-+.|+.|++++. +-....|.||+..+-.++.. ++ .++....|+|.+..|+.-..
T Consensus 290 ~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~A--rm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 290 AT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFA--RMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred cc-cchhcceeccCCCccccceEEeccCCceeE--EeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 98 6666666542 2223 2468998876443 33347899999876443321 22 35677889998777666443
Q ss_pred -----CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEECCCCCCcceEEEecc
Q 002471 784 -----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELSC 847 (918)
Q Consensus 784 -----dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-----------~I~iwdl~s~~~~~~i~~~~~ 847 (918)
-.++.+..+.++..+++..-+.-.=..+.|-.+|.+|+.--+. .+.|+.++..........+
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-- 444 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-- 444 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--
Confidence 2377888888887777655554444557788888888754321 3566666644322222222
Q ss_pred CCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCC-CcEEEE--cccCCCeEEEEEeCCCCEEEEEe---cCCcEEEeC
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTL--TAHEGLIAALAVSTETGYVASAS---HDKFVKLWK 918 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~-~~~~~~--~~h~~~V~~la~spdg~~Lasgs---~Dg~I~IWd 918 (918)
...|...+|.|.|..+++.+.. .+|.+|.+.+ .....+ .-.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 445 -ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 -KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred -chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 5578889999999998887764 3899998873 322211 11235678899999999988765 456677665
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.3e-10 Score=134.68 Aligned_cols=208 Identities=17% Similarity=0.284 Sum_probs=164.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----Cce
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 767 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~ 767 (918)
+..+..+..++.+.-|..+..+ ..++.+-..|.++.-+|....+| ||+.||.|++|....+..+..+.. .+.
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3445555556666667665422 23334556788888899877776 999999999999998887776653 355
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCcceEE
Q 002471 768 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVH 843 (918)
Q Consensus 768 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~---d-~I~iwdl~s~~~~~~i~ 843 (918)
.+.|+..|+.+-++..||.+.+|.+. .++....+.|......+.|-. ..+++.+. + .+.+||........+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 67899999999999999999999987 677777888999999999885 66666542 3 79999987665556666
Q ss_pred EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 844 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+|...++++++.|....|++|+.+|.|++||++..+++ .+.. ++ ...+|++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 889999999999999999999999999999999988766 3322 34 556899999999999996
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-08 Score=111.98 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=156.7
Q ss_pred cccccCccceeeeeeecCCCCeEEEEEccCC------------CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE
Q 002471 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (918)
Q Consensus 620 ~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg------------~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 687 (918)
+.+.+..+++.+.+++-|...|+.|.|.|-. -+||++...|.|.|||+..+..+..+..|.+.|.+++
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence 3444556888999999999999999998722 2678888899999999999999999999999999999
Q ss_pred ECC---CC-CEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------
Q 002471 688 FSP---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG------- 756 (918)
Q Consensus 688 fsp---dg-~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~------- 756 (918)
|-+ +. ..|++-....+|.+|+.++ +..+..+........|+.+.|.+..-++.-+..|.|.+-+.-..
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 977 33 3566667788999999998 44454444445567779999876666656666777777665321
Q ss_pred eeeEEeec--------------------C--------ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCe
Q 002471 757 SCTRVFKG--------------------G--------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 808 (918)
Q Consensus 757 ~~~~~~~~--------------------~--------~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V 808 (918)
+....-.. . ...++|+|.-..++.......+.|+|++-..++..+.-..+.+
T Consensus 196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~a 275 (1062)
T KOG1912|consen 196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGA 275 (1062)
T ss_pred eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCc
Confidence 11111000 0 0124578888888888899999999999888888777666766
Q ss_pred EEEEEcCCCC--EEEEEeCC-eEEEEECC
Q 002471 809 DSVCWDPSGE--LLASVSED-SVRVWTVG 834 (918)
Q Consensus 809 ~si~~spdg~--~Las~s~d-~I~iwdl~ 834 (918)
.-+.|-|+++ .|++...+ .+.||-.+
T Consensus 276 kfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 276 KFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 7777777665 67777666 77777543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-07 Score=101.88 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=114.9
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg-~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
-+|...|.-..+..+++-++.|..|| .|-|||.++++ ++.+...-+.|.++..+++|++++++.....|.+.|+++ +
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-g 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-G 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-C
Confidence 36788899999999999999999999 89999998876 455556678899999999999999999999999999998 4
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC----CcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D----g~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~ 783 (918)
.....-+...+-|+.+.|+|++..+. -+--+ ..|+++|+..++....-.. ...+-+|.|++++|..-+.
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 44444445667899999999977554 33334 4699999999887665432 3445678888887766553
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=132.40 Aligned_cols=224 Identities=14% Similarity=0.241 Sum_probs=164.7
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.++.+-..|.++.-+|...+.+||+.||.|++|....+..+..++. ....|+.+.|+..|+.+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3456678899999999999999999999999999988888877762 33889999999999999999999999999997
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.++......|.....+++|.. .++++++ .++.+.+||..-...
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------------------------------ 2327 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------------------------------ 2327 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc------------------------------
Confidence 467788889999999999985 3555553 357788887532110
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002471 789 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 867 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~ 867 (918)
..++. ..|...++++++.|...+|++|+.+ .|++||++.. ..++.+.. ++ ...+|+++
T Consensus 2328 ------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr---ql~h~~~~---------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2328 ------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR---QLRHTFQA---------LD-TREYFVTG 2386 (2439)
T ss_pred ------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH---HHHHHhhh---------hh-hhheeecc
Confidence 01122 4588899999999999999999988 9999999754 33333322 44 56678999
Q ss_pred EcCCeEEEEECCCCcEE-EEc---ccCCCe----EEEEEeCCCCEEEEEecCCc
Q 002471 868 GCYQSLELWNMSENKTM-TLT---AHEGLI----AALAVSTETGYVASASHDKF 913 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~-~~~---~h~~~V----~~la~spdg~~Lasgs~Dg~ 913 (918)
+..|.|+||++.....+ .+. +|.+.. .-+.+.. +..|.+|+.||+
T Consensus 2387 ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~-~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQ-CNRIFSCGADGT 2439 (2439)
T ss_pred CcccceEEEEccccchhhcCchhhcccchhhhcCceeeecc-CceEEEecCCCC
Confidence 99999999999877655 211 222211 1122223 346778888874
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-07 Score=108.97 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=130.0
Q ss_pred CeEEEEEccCCCE-EEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEe-CC--CeEEEEeCCCC
Q 002471 640 KVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FD--KTVRVWDADNP 712 (918)
Q Consensus 640 ~V~~l~fspdg~~-Latgs~D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~D--g~V~Iwdl~~~ 712 (918)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+....|+|||+.|+... .+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~- 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT- 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 7888999999984 6654443 468999998876554443 555677789999998776543 33 4677778875
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcC------
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE------ 784 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~d------ 784 (918)
+. .+.+..+........|+|||+.++++....+ .|+++|+.+++..+....+.....|+|+++.++.....
T Consensus 267 g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 267 KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence 33 4444444443456789999998887776555 58888888887655443332345899999998887753
Q ss_pred ---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC
Q 002471 785 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG 834 (918)
Q Consensus 785 ---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~ 834 (918)
..|.++|+.++.... +... .......|+|||+.|+..... .+.++++.
T Consensus 346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 368888998886533 3322 233468899999976655533 36666664
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.1e-07 Score=110.56 Aligned_cols=257 Identities=14% Similarity=0.190 Sum_probs=167.0
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeC---C---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCe
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGH---D---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKT 703 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~---D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~ 703 (918)
.+. +.+.-..|+|-.||.|+|+.+. + ..||||+-+ |....+-+.-.+--.+++|.|.|++||+.-. ...
T Consensus 205 ~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 205 KLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred ccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 344 6677889999999999999875 2 579999965 6655555555555678899999999999865 445
Q ss_pred EEEEeCCCCCceeEEe----ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--e--e--cCceEEEEec
Q 002471 704 VRVWDADNPGYSLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--F--K--GGTAQMRFQP 773 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~--~--~~~~~v~~sp 773 (918)
|.+|.-+ +.....| ......|..|.|+.++.-|. ..-.| .|.+|-..+.....+ + . .....+.|++
T Consensus 283 VvFfErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLA-v~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 283 VVFFERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILA-VWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred EEEEecC--CcEeeeEecCCCCCCceeeEEEECCCCCEEE-EEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 7777654 2222222 23456799999999977444 44444 499999888753222 2 1 1234488988
Q ss_pred CCCE-EEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEc----CCCC-EEEEEeCCeEEEEECCCCCCc--ceEEEe
Q 002471 774 HLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD----PSGE-LLASVSEDSVRVWTVGSGSEG--ECVHEL 845 (918)
Q Consensus 774 ~~~~-ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s----pdg~-~Las~s~d~I~iwdl~s~~~~--~~i~~~ 845 (918)
.... +.+.+.++.+.+++.. ..++.+ |+.. .+++...+++++-.++....+ -+...+
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~---------------~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFA---------------WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEE---------------EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence 7654 5555555777666542 111222 2233 444444458888888765433 333444
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---------EEc----------ccCCCeEEEEEeCCCCEEE
Q 002471 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---------TLT----------AHEGLIAALAVSTETGYVA 906 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~---------~~~----------~h~~~V~~la~spdg~~La 906 (918)
.. ...|..++|++++..+++...||.|.+|........ .+. .....+..++|..+..+++
T Consensus 424 ~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 424 EL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred cC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 44 567999999999998999999999999885432111 111 1234578888888777666
Q ss_pred EEecC
Q 002471 907 SASHD 911 (918)
Q Consensus 907 sgs~D 911 (918)
....+
T Consensus 503 ~~~~~ 507 (928)
T PF04762_consen 503 LSDSD 507 (928)
T ss_pred EEecC
Confidence 65554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-07 Score=105.06 Aligned_cols=224 Identities=12% Similarity=0.105 Sum_probs=144.1
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 735 (918)
..|.+-|.+... ...+.... .+....|+|||+. ++..+.+ ..|.++|+.+ +.. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEecCCCcEEeeEECCCC
Confidence 345554544333 33333333 7888999999985 6654443 4688889976 332 3333355666778899999
Q ss_pred CeEEEEEeCC--CcEEEEEcCCCeeeEEeecC--ceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCe
Q 002471 736 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 808 (918)
Q Consensus 736 ~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V 808 (918)
..++++.+.+ ..|+++|+.+++........ .....|+|++..++..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888777655 46888898887654433322 3456899999988887753 2 688889988876443321 111
Q ss_pred EEEEEcCCCCEEEEEeC--------C--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 002471 809 DSVCWDPSGELLASVSE--------D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL 875 (918)
Q Consensus 809 ~si~~spdg~~Las~s~--------d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~v 875 (918)
...|+|||++|+..+. + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 2489999997776553 2 577888876632 222222 2233578999999888876543 5778
Q ss_pred EECCCCcEEEEcccCCCeEE
Q 002471 876 WNMSENKTMTLTAHEGLIAA 895 (918)
Q Consensus 876 wd~~~~~~~~~~~h~~~V~~ 895 (918)
+++.......+....+.|..
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQS 416 (419)
T ss_pred EecCCCeeEEeecCCCccCC
Confidence 88877766665554444443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=122.04 Aligned_cols=217 Identities=20% Similarity=0.291 Sum_probs=155.3
Q ss_pred ccccccCccceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEE
Q 002471 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLA 696 (918)
Q Consensus 619 ~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~iwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~La 696 (918)
+|.+.+...-.....+.+|+..|+.+.|.+.. ..|++++.|-.|..||+.+. ..+..+..-......|+|+-....+.
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 45555554555667789999999999999844 68999999999999999854 45555555556678899998666666
Q ss_pred EEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----ecCceEEEEe
Q 002471 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQ 772 (918)
Q Consensus 697 sgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~s 772 (918)
+.+..+.|+|||++.++.++..+++|...|+.++|...-...+.+++.||+|++||.......... +..+-.-++.
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 667778899999999899999999999999999998765556779999999999998765322221 1122233344
Q ss_pred cCCCEEEEE-----------EcCCeEEEEECCC-ceEEEEecCCCCCeEEEEEcC--------CCC--EEEEEeCC-eEE
Q 002471 773 PHLGRYLAA-----------AAENVVSILDAET-QACRLSLQGHTKPIDSVCWDP--------SGE--LLASVSED-SVR 829 (918)
Q Consensus 773 p~~~~ll~~-----------~~dg~I~i~D~~t-~~~~~~l~~h~~~V~si~~sp--------dg~--~Las~s~d-~I~ 829 (918)
|-+.-++.- -.++....|+..+ ...+++|.+|.+.|....|-. |.+ -|++=+.| +++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 433322221 1122333344433 368899999999887666543 222 68899999 999
Q ss_pred EEECCC
Q 002471 830 VWTVGS 835 (918)
Q Consensus 830 iwdl~s 835 (918)
+|-+.+
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998854
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-10 Score=127.65 Aligned_cols=262 Identities=16% Similarity=0.193 Sum_probs=180.4
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC--eE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V 704 (918)
.|+..++++.|+...+|++|+-+.+.|++|+..|.|++|++.+|........|...|+-|.=+.||..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5788889999999999999999999999999999999999999999999999999999999999999877765533 47
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-------CceEEEEecCCCE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGR 777 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-------~~~~v~~sp~~~~ 777 (918)
.+|++.+......+|.+ ..++.|+.....-+ .|.......+||+.++..+.++-. ...+..|+|++..
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875555555553 44577875533223 344456789999999876655322 2356778888776
Q ss_pred EEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 778 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 778 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
++- || .+||++..+.++.|......+ .-.|+|.|.-++.-++ |||+++......+-.+ .-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE----IwD~RTF~lLh~VP~L-----dqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE----IWDMRTFKLLHSVPSL-----DQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech----hhhhHHHHHHhcCccc-----cceEEEe
Confidence 652 33 589999988887776544332 3469999997777654 8999887432222222 1234567
Q ss_pred eCCCCEEEEEEc-----C------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002471 858 HPTYPSLLVIGC-----Y------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 858 sp~g~~l~s~s~-----d------------g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasg 908 (918)
...|..++..-. + ...+-||...-..+........|..+|-++...+++..
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 766665544320 0 02333444444444333445556666666666665543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=104.34 Aligned_cols=244 Identities=12% Similarity=0.205 Sum_probs=167.6
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcE
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEI 748 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 748 (918)
...+..+++|.+.|++...-|...-+++.+.|.+||||--++.+..... ......+++++.+.++... |+.+-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~-L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR-LYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE-EEEEEecceE
Confidence 3456678899999999999998889999999999999966553433322 2235678899999988654 4478888999
Q ss_pred EEEEcCCC----eeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEE
Q 002471 749 RYWSINNG----SCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 821 (918)
Q Consensus 749 ~iwdl~~~----~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~La 821 (918)
.-+.+... ...+.+. ..+..+.|+.....++..+.|..+.---.+.+..+..+.- ...-+++.|+-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 88876432 2222222 2345566666667777777777665444444332211100 001111111111 222
Q ss_pred EEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEE
Q 002471 822 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAV 898 (918)
Q Consensus 822 s~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~ 898 (918)
.|... .|.+-.+.. .....+..+.+|...+.++.|.+....|++|..|..|.+||+..++-+ .+.+|...|..+..
T Consensus 170 vGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 33322 333332221 234678889999999999999999999999999999999999766654 78899999999999
Q ss_pred eCCCCEEEEEecCCcEEEeC
Q 002471 899 STETGYVASASHDKFVKLWK 918 (918)
Q Consensus 899 spdg~~Lasgs~Dg~I~IWd 918 (918)
.+--+.+++++.||.|.+|+
T Consensus 249 ~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhheeeeeccCCCeEEEEe
Confidence 88888999999999999996
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-07 Score=93.77 Aligned_cols=247 Identities=9% Similarity=0.002 Sum_probs=161.3
Q ss_pred CCcEEEEECCCCc-eeeEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 659 DKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 659 Dg~V~iwd~~~~~-~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
...|.+|++-+.. .+..+. ..+.|.| ...+||.|+..|...+|...+..........|...|+-+.=.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 4457777765432 122221 3344544 345899999999999999987555555555555544322211
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCc-e-EEE-EecCCCC
Q 002471 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-A-CRL-SLQGHTK 806 (918)
Q Consensus 733 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-~-~~~-~l~~h~~ 806 (918)
-+...-+..++.|.++++.+++.+....... .....+.+++++.++++++....|..|.+... + .+. ......+
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence 1222223467889999999887664433332 23677889999999999999999999987653 2 222 2333455
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc--eEEEeccCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCCC
Q 002471 807 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--CVHELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 807 ~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~--~i~~~~~~~~~i~~i~~sp~g~--~l~s~s~dg~I~vwd~~~~ 881 (918)
.-.+..|+.....+|++..| ++.|||++...... ....-..|.+.+..|.|++.|. .|+..-.-+.+.|.|++++
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 56788999999999999999 99999998764322 2223345788999999998764 3455555578999999988
Q ss_pred cEEE--------EcccCC-CeEEEEEeCCCCEEEEEecC
Q 002471 882 KTMT--------LTAHEG-LIAALAVSTETGYVASASHD 911 (918)
Q Consensus 882 ~~~~--------~~~h~~-~V~~la~spdg~~Lasgs~D 911 (918)
+-.. ...|.. .|..-.|+.++.-+.+.+++
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 7541 122332 37777888777666555543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-07 Score=108.04 Aligned_cols=261 Identities=15% Similarity=0.222 Sum_probs=170.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC------------CEEEEEeCCCeEEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM------------PRLATSSFDKTVRV 706 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg------------~~Lasgs~Dg~V~I 706 (918)
..-.++.|++.| +||.|+. ..|.|.|..+.+.+..+..|...|+.|.|.|.. -+||++...|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 336788899888 7777764 478999999999999999999999999998721 15677777899999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCC---CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEEecCC-CEEE
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHL-GRYL 779 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~-~~ll 779 (918)
||+.. ...+..+..|.++|..++|.+. .++++++-....+|.+|+..+|+....+.... .++.+.|-+ ..+.
T Consensus 94 ~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 99997 6667778889999999999763 44667677778999999999998887765432 345666654 3444
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---CceEEE
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKFHSC 855 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---~~i~~i 855 (918)
+.+..|.|.+.+.-..+ ....+ |+.+-..++. .+.--..++... ......+... .....+
T Consensus 173 ~l~s~g~vl~~~~l~~s------ep~~p---------gk~~qI~sd~Sdl~~lere~at~-ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLS------EPDVP---------GKEFQITSDHSDLAHLERETATG-NSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred EEccCceEEEEeccCCC------CCCCC---------ceeEEEecCccchhhhhhhhhcc-ccccCCCcchhHHHHHHhh
Confidence 44555555444322110 01111 1111111110 000000000000 0000000000 012345
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC--EEEEEecCCcEEEeC
Q 002471 856 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVKLWK 918 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~--~Lasgs~Dg~I~IWd 918 (918)
+|+|..+.++....-+.+.|+|++-..++ .+.-..+.+.-+.|-|+++ .|++.-.||.+.||.
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 78999988888889999999999988777 4444556677777777654 688888999999983
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-08 Score=105.82 Aligned_cols=238 Identities=16% Similarity=0.176 Sum_probs=160.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeeEecc--CCCCeEEEEECCC-CC-EEEEE-eC
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPS-MP-RLATS-SF 700 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~V~iwd~~~~~~~~~l~~--h~~~V~~l~fspd-g~-~Lasg-s~ 700 (918)
-.+-+..++.|...|.+++.+-||.+++|.+. |+.++++|+++...+.-++. -.+.+.+ ..++. .. .|+++ -.
T Consensus 42 GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 42 GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFK 120 (558)
T ss_pred ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeeccc
Confidence 34566778899999999999999999999887 99999999987665544332 2222222 22332 11 33333 34
Q ss_pred CCeEEEEeCCCCCcee-EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEE
Q 002471 701 DKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 779 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll 779 (918)
++.|.|+|-....... ..-.-|..+|.++.+.+.++..+ +....|.|..|..+. .|.-....+.|
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~-----~~qfPr~~l~~-------- 186 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEG-----PFQFPRTNLNF-------- 186 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCC-----cccCccccccc--------
Confidence 8899999987655333 34445999999999999987655 888889999998763 11111111222
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE--------------
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE-------------- 844 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~-------------- 844 (918)
.+....-+..+........+++|+|++..+.+-+.| .|+++++++++....+.+
T Consensus 187 -----------~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 187 -----------ELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred -----------cccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 222222233333345667899999999999999999 999999988743222111
Q ss_pred ---------------eccC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC
Q 002471 845 ---------------LSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 891 (918)
Q Consensus 845 ---------------~~~~-~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~ 891 (918)
+..+ ...-+.++|...+++|+.++--| |+|+++.++++.++.+...
T Consensus 256 l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDE 317 (558)
T ss_pred cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccch
Confidence 1111 12345678999999998887654 8899999988876655443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-09 Score=116.36 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=134.3
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC
Q 002471 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746 (918)
Q Consensus 673 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 746 (918)
+..+.+|...|..++--.+.+-+++++.|++|++|.++..+ .+-.++..|+.+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 45677999999999888888899999999999999998643 25567889999999999998754 44354 89
Q ss_pred cEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE-eC
Q 002471 747 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SE 825 (918)
Q Consensus 747 ~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~-s~ 825 (918)
.|.+||.--++.+.... +.|. .+....|.|+. +-+..+++.+ +.
T Consensus 805 giHlWDPFigr~Laq~~-------dapk---------------------------~~a~~~ikcl~-nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQME-------DAPK---------------------------EGAGGNIKCLE-NVDRHILIAGCSA 849 (1034)
T ss_pred cceeecccccchhHhhh-------cCcc---------------------------cCCCceeEecc-cCcchheeeeccc
Confidence 99999976655443221 1111 01112222221 1133344444 45
Q ss_pred C-eEEEEECCCCCCcceEEEe--ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC
Q 002471 826 D-SVRVWTVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE 901 (918)
Q Consensus 826 d-~I~iwdl~s~~~~~~i~~~--~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spd 901 (918)
. +|+++|.+..+-...++.. .+....+.+++..+.|++++++-.+|+|.+.|.++|+++ .+...+.....++- |.
T Consensus 850 eSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-ps 928 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PS 928 (1034)
T ss_pred hhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-ch
Confidence 5 8999999887432222222 223455889999999999999999999999999999977 34333333332322 33
Q ss_pred CCEEEEEecCCcEEE
Q 002471 902 TGYVASASHDKFVKL 916 (918)
Q Consensus 902 g~~Lasgs~Dg~I~I 916 (918)
...|+....|.++.|
T Consensus 929 dq~L~~saldHslaV 943 (1034)
T KOG4190|consen 929 DQALAQSALDHSLAV 943 (1034)
T ss_pred hHHHHhhcccceeEe
Confidence 344444444555444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-06 Score=92.89 Aligned_cols=214 Identities=14% Similarity=0.052 Sum_probs=138.0
Q ss_pred CCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCC
Q 002471 658 HDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735 (918)
Q Consensus 658 ~Dg~V~iwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 735 (918)
.+|+|..||..+++.+.....- .....+. ...++.+|++++.++.|..||..+ ++.+..+.. ...+...... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEE-ET
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeee-cc
Confidence 3689999999999998887641 1222222 223566888888999999999988 555555443 2222211122 23
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeeEEe-ecC------ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC-
Q 002471 736 DDLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP- 807 (918)
Q Consensus 736 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~------~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~- 807 (918)
+.++ .+..++.|+.+|.++++.+..+ ... .........++.++++..++.|..+|.++|+.+.........
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 4444 5557889999999999988874 321 122333444788888988999999999999998888664422
Q ss_pred ---------eEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 808 ---------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 808 ---------V~si~~spdg~~Las~s~d-~-I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
+.+-.+..++ .++.++.+ . +.+ |+.+++ .+.... ...+.. ....++..|++++.++.|.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 1222233345 55555544 4 555 998874 332222 122222 245677888888899999999
Q ss_pred ECCCCcEE
Q 002471 877 NMSENKTM 884 (918)
Q Consensus 877 d~~~~~~~ 884 (918)
|+++++.+
T Consensus 228 d~~tG~~~ 235 (238)
T PF13360_consen 228 DLKTGKVV 235 (238)
T ss_dssp ETTTTEEE
T ss_pred ECCCCCEE
Confidence 99999875
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=103.80 Aligned_cols=233 Identities=16% Similarity=0.261 Sum_probs=145.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce----eEEeccCC------------CCeeEEEEcCCC-CeEEEE
Q 002471 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----LRTFMGHS------------ASVMSLDFHPNK-DDLICS 741 (918)
Q Consensus 679 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~----~~~~~~h~------------~~V~sl~fsp~~-~~ll~s 741 (918)
....|++|.|...|.||++|...|.|.+|.-+....| +..|.+|. ..|..|.|..++ ..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999999999999987653322 22344443 457888887653 333446
Q ss_pred EeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEc---------CCeEEEEECCCceEEEE-ecCCCCCeEEE
Q 002471 742 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLS-LQGHTKPIDSV 811 (918)
Q Consensus 742 gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~---------dg~I~i~D~~t~~~~~~-l~~h~~~V~si 811 (918)
.+.|.+|++|.+.......+.......-.-+|.++-+.+... |..|..+ +.+. -..|..-|.+|
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiNSi 178 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHINSI 178 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEeeee
Confidence 677999999999865332221111111111222211111000 1111111 1111 14578889999
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-
Q 002471 812 CWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM- 884 (918)
Q Consensus 812 ~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~-----~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~~~~~~~- 884 (918)
.|..|...++++.+=.|.+|++......-.+..++.|. ..|++..|+|.. ..+...+..|.|++-|++...+.
T Consensus 179 S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 179 SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 99999888876655599999987654333333444432 347788899964 55667778899999999832211
Q ss_pred --------EE--------cccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 885 --------TL--------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 --------~~--------~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+ ..-...|..+.|+++|++|++-+. -+|+|||
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 123357889999999999987653 4799997
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-06 Score=100.19 Aligned_cols=252 Identities=11% Similarity=0.028 Sum_probs=155.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCe---
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--- 726 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V--- 726 (918)
+..++.++.+|.|+.+|.++++.+............... .+..|++++.++.|..+|..+ ++.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence 457778888999999999999988877654321111112 244677788899999999998 44444433211100
Q ss_pred --eEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc----e------EEEEec--CCCEEEEEEcCCeEEEEEC
Q 002471 727 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMRFQP--HLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 727 --~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~~sp--~~~~ll~~~~dg~I~i~D~ 792 (918)
.+-... ++. ++.++.+|.|..+|..+++.+..+.... . .+...| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 011111 233 4467779999999999998766543210 0 011111 3577888888999999999
Q ss_pred CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCCEEEEEEcC
Q 002471 793 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 793 ~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g~~l~s~s~d 870 (918)
.+++.+...... ....+.. ++..|+.++.+ .|..+|..+++. +...... .....+..+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE---LWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcE---EEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887765421 1112222 34555555555 999999987732 2221111 111222222 25678899999
Q ss_pred CeEEEEECCCCcEE-EEcccCCCeE-EEEEeCCCCEEEEEecCCcEEEeC
Q 002471 871 QSLELWNMSENKTM-TLTAHEGLIA-ALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 871 g~I~vwd~~~~~~~-~~~~h~~~V~-~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|.|+++|..+++.+ ........+. ...+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 99999999999987 3332323233 2222 244788889999998764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-07 Score=99.64 Aligned_cols=248 Identities=16% Similarity=0.197 Sum_probs=150.3
Q ss_pred EEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEE
Q 002471 662 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (918)
Q Consensus 662 V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 740 (918)
|++.+..+.+....+.+|...|.+++|+|..+ +|..++.+.+|+|.|+++ ..++..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 66777667777777888999999999999777 788999999999999998 6677777777 88999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeeE-Eeec-----CceEE------EEecCCCEEEEEEcCCeEEEEEC----CCceEEEEecCC
Q 002471 741 SCDGDGEIRYWSINNGSCTR-VFKG-----GTAQM------RFQPHLGRYLAAAAENVVSILDA----ETQACRLSLQGH 804 (918)
Q Consensus 741 sgs~Dg~I~iwdl~~~~~~~-~~~~-----~~~~v------~~sp~~~~ll~~~~dg~I~i~D~----~t~~~~~~l~~h 804 (918)
+|...|.|.|||++..+-.. .+.+ .+..+ ...+.++.+++...+- ..|+. +...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccC-C
Confidence 99999999999998754221 1111 11111 2333444444444332 23322 2222222222 2
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCC----eEEEE----ECCCCCCcceEEEe-ccC-CCce------EEEEEeCCCCEEEEE
Q 002471 805 TKPIDSVCWDPSGE-LLASVSED----SVRVW----TVGSGSEGECVHEL-SCN-GNKF------HSCVFHPTYPSLLVI 867 (918)
Q Consensus 805 ~~~V~si~~spdg~-~Las~s~d----~I~iw----dl~s~~~~~~i~~~-~~~-~~~i------~~i~~sp~g~~l~s~ 867 (918)
.+.+.++.+++..+ +|++.-.+ .++.. |.+++ ..+... ..+ +.+- ..+.-.++..+|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 44555566665444 44444332 11111 11111 111100 011 1111 112223455555544
Q ss_pred E-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeC-C-CCEEEEEecCCcEEEeC
Q 002471 868 G-CYQSLELWNMSENKTMTLTAHEGLIAALAVST-E-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 868 s-~dg~I~vwd~~~~~~~~~~~h~~~V~~la~sp-d-g~~Lasgs~Dg~I~IWd 918 (918)
+ ..+.+.+||..+.+++....-..+|.+++... + +.+|++-. |..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 4 34699999999999985556668888887654 2 34666554 55788875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-05 Score=85.97 Aligned_cols=214 Identities=18% Similarity=0.199 Sum_probs=138.0
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCCceeEEec
Q 002471 643 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 643 ~l~fsp-dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
+++|.+ ++.++++-...+.|+.|+..+++... +.... ...+++. +++ .|+.+..++ +.++|+.+ +.....+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~-g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDT-GKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTT-TEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCC-CcEEEEee
Confidence 678988 66677776678999999998776543 22222 6677777 564 555555554 56669887 33222222
Q ss_pred c-----CCCCeeEEEEcCCCCeEEEEEeCC--------CcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEE-cC
Q 002471 721 G-----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA-AE 784 (918)
Q Consensus 721 ~-----h~~~V~sl~fsp~~~~ll~sgs~D--------g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~-~d 784 (918)
. .....+++++.++|. +.++.... |.|..++.. ++...... .....++|+++++.++++. ..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 1 345688999999987 44454433 567888877 55444333 3456799999999877654 47
Q ss_pred CeEEEEECCC--c-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 785 NVVSILDAET--Q-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 785 g~I~i~D~~t--~-----~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
+.|..|++.. . +....+.........++++.+|++.++.... .|.++|.+ + +.+..+......+++|+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence 8899998853 2 1122222222347889999999977776655 99999986 4 45555555556899999
Q ss_pred Ee-CCCCEEEEEE
Q 002471 857 FH-PTYPSLLVIG 868 (918)
Q Consensus 857 ~s-p~g~~l~s~s 868 (918)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 6767666654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.1e-08 Score=108.54 Aligned_cols=229 Identities=16% Similarity=0.201 Sum_probs=161.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC--------------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--------------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 745 (918)
.....|+.|+.+..+|++|+.||.++|..+.+.. ..-.++.||...|.-+.|+..... +.+.+.+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCCC
Confidence 4458899999999999999999999999886521 112467899999999999987654 4488899
Q ss_pred CcEEEEEcCCCeeeEEe-----ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEE-EEecCCCCCeEEEEEcCCCCE
Q 002471 746 GEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR-LSLQGHTKPIDSVCWDPSGEL 819 (918)
Q Consensus 746 g~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~-~~l~~h~~~V~si~~spdg~~ 819 (918)
|.|.+|-+-.+.....+ +.-+.+++|..+|.++..+..||.|.+=.++..+.- +.+++ .-...+.|++|.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHH
Confidence 99999998877543322 234567889999999999999998877665543221 11221 22457889999986
Q ss_pred EEEEeCC-eEEEEECCCCCC----cceE----EEeccCCCceEEEEE--------eCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 820 LASVSED-SVRVWTVGSGSE----GECV----HELSCNGNKFHSCVF--------HPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 820 Las~s~d-~I~iwdl~s~~~----~~~i----~~~~~~~~~i~~i~~--------sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
++.+-.+ .+.+||....-. ..|. ..+......|..+.| -|+.+.|+++-..|.+.|..-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 6666555 899999754311 1121 112222334555555 3588899999999988887655444
Q ss_pred EEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 883 TMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
.-.+....-.|..+.|+++|.+|+.++.|
T Consensus 251 ~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 251 EPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCeEEecccEeecceecCCCcEEEEccCc
Confidence 33344444778899999999999998865
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-05 Score=86.34 Aligned_cols=216 Identities=9% Similarity=0.044 Sum_probs=138.3
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002471 684 TDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (918)
Q Consensus 684 ~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 762 (918)
.++.|.+ ++.++++-...+.|..|+..+. ....+.... ...+++...++.++ .+.. +.+.++|+.+++....+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~--~~~~~~~~~--~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTG--EVEVIDLPG--PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTT--EEEEEESSS--EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCC--eEEEEecCC--CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEe
Confidence 3678888 6666666667899999999873 223232222 67777773335555 4443 55566699988655443
Q ss_pred ec--------CceEEEEecCCCEEEEEEcC--------CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002471 763 KG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 826 (918)
Q Consensus 763 ~~--------~~~~v~~sp~~~~ll~~~~d--------g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d 826 (918)
.. ....+++.++++.+++.... +.|+.++.. ++...... .-...+.|+|+|+++.|+.+...
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 32 23568899998866655442 568888888 55443333 34557899999999977655444
Q ss_pred --eEEEEECCCCCC-c---ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002471 827 --SVRVWTVGSGSE-G---ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 899 (918)
Q Consensus 827 --~I~iwdl~s~~~-~---~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~s 899 (918)
.|..|++..... . ..+..+....+....+++..+|..+++....+.|.++|.. ++.+ .+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 888888864322 1 2223333333457889999999988877788999999998 6655 444444689999994
Q ss_pred -CCCCEEEEE
Q 002471 900 -TETGYVASA 908 (918)
Q Consensus 900 -pdg~~Lasg 908 (918)
++.+.|+..
T Consensus 234 g~~~~~L~vT 243 (246)
T PF08450_consen 234 GPDGKTLYVT 243 (246)
T ss_dssp STTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 665655543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.5e-07 Score=90.41 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=128.8
Q ss_pred CCeEEEEeCCCCCc-eeEEeccCCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEe-ecCceEEE----
Q 002471 701 DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMR---- 770 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~~~~v~---- 770 (918)
...|-+|++.+..+ .+..+.+ +.|.|. ...+|+.|+..|...+|...+....... ..+...+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34578888876432 2333322 444442 2336778889999999999866533222 22222111
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002471 771 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 849 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 849 (918)
+......+..++.|.++++++++-+.....+....-.+.++.+++|++++++.++. .|.+|.+....+...-.......
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 11222456777888888888877554333332222338899999999999999888 89999997654322222333334
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCC
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG 903 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~------~~~~h~~~V~~la~spdg~ 903 (918)
..-.+..|+.....++++..||++.|||++..... ....|.+.|+.+.|++.|.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 44567789999999999999999999999876543 3446899999999998654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-08 Score=103.97 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=88.4
Q ss_pred EEEEccCCCEEEE---EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEe
Q 002471 643 CCHFSSDGKLLAT---GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 643 ~l~fspdg~~Lat---gs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 719 (918)
++.|..+...... ++....+.+|....+. ...+-+|-..+++|+|+||+++|+++..|..|||-........-..+
T Consensus 112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 112 AISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred eeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 3344444444444 4445556666655543 34455899999999999999999999999999999887633333455
Q ss_pred ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002471 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 720 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 763 (918)
.||+..|..++..++ ++|++++.|++|++||+++++++.++.
T Consensus 191 lGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 689999999999875 356699999999999999999887764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.5e-06 Score=86.43 Aligned_cols=224 Identities=16% Similarity=0.116 Sum_probs=121.9
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCC--ceeeEecc---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE
Q 002471 644 CHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEE---HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (918)
Q Consensus 644 l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~~l~~---h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 718 (918)
++.+.||++||+-- |..|.|=..++. ..+.+... ..-.=+.++|+||+..||.+...|+|+|||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 56778998888764 666666554321 12222222 223357899999999999999999999999984 33333
Q ss_pred eccCC-------CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 719 FMGHS-------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 719 ~~~h~-------~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
+.... ..|..+.|.+. +. . ......+++...+|.++-|-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~-------------------~~------------s---~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEY-------------------KK------------S---AQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred cCcccccCCccccceeeeEeecc-------------------cc------------c---cccceeEEEEeccceeeeEE
Confidence 33211 11222222111 10 0 01112345555555554443
Q ss_pred CC-----CceEEEE--ecC-CCCCeEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 792 AE-----TQACRLS--LQG-HTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 792 ~~-----t~~~~~~--l~~-h~~~V~si~~spdg~~Las~s~d-~-I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
+. .....++ +.. +...|.++.|+|..++|++|+.. . -..+.. ....+++-..-.+.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a--------------~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKA--------------SSCGLTAWRILSDS 191 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccc--------------cccCceEEEEcCCC
Confidence 31 1122222 322 46789999999998977777654 2 001100 01111111111111
Q ss_pred CE--EEEEEcCC------eEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 862 PS--LLVIGCYQ------SLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 862 ~~--l~s~s~dg------~I~vwd~~~~~~~~-~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++ .++...|+ +..+|.+-+.+... .......|..|..+|||..||+...+|.|.||+
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 11 11111121 23445544444332 234567899999999999999999999999996
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-06 Score=99.13 Aligned_cols=255 Identities=9% Similarity=0.043 Sum_probs=151.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCC-Ce-E-----EEEECC--CCCEEEEEeCCCeEEEEeCCCCCceeEEec
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LI-T-----DVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~-~V-~-----~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
+..+++++.+|.|.-+|.++++.+........ .+ . .+.-.| ++..|+.++.+|.|..+|.++ ++.+....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~t-G~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAED-GEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCC-CCCccccc
Confidence 55778888889999999999988877653221 00 0 000011 356788888899999999988 44444333
Q ss_pred cCCCCeeE-EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEE----Ee--cCCCEEEEEEcCCeEEEEECC
Q 002471 721 GHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQ--PHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 721 ~h~~~V~s-l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~----~s--p~~~~ll~~~~dg~I~i~D~~ 793 (918)
.. ..+.+ .... ++. ++.+..+|.|..+|.++++.+..+......+. .+ ..++.++++..++.+..+|..
T Consensus 148 ~~-~~~~ssP~v~--~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VA-GEALSRPVVS--DGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CC-CceecCCEEE--CCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 22 22221 1222 233 44677799999999999998887754321110 01 124567888889999999999
Q ss_pred CceEEEEecCCCC-------CeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 794 TQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 794 t~~~~~~l~~h~~-------~V~si~~sp--dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
+++.+........ ....+..+| .+..+++++.+ .+..+|..+++. +..... .....+. ..+..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~--~~~~~~~--~~~~~ 296 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI---VWKREY--GSVNDFA--VDGGR 296 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE---EEeecC--CCccCcE--EECCE
Confidence 9987766432110 011111122 23445555555 999999988742 222211 1111122 24667
Q ss_pred EEEEEcCCeEEEEECCCCcEEE-EcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 864 LLVIGCYQSLELWNMSENKTMT-LTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~~~~-~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|++++.++.|..+|..+++.+. ..... ....+..+ .+.+|+.++.||.|++.|
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 8889999999999999998762 21111 11222222 244677778888877653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.74 E-value=9e-06 Score=86.73 Aligned_cols=245 Identities=15% Similarity=0.129 Sum_probs=159.9
Q ss_pred eEEEEEcc-CCCEEEEEeCCCc-EEEEECCCCceeeEeccCCCCe--EEEEECCCCCEEEEEeC-----CCeEEEEeCCC
Q 002471 641 VICCHFSS-DGKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSF-----DKTVRVWDADN 711 (918)
Q Consensus 641 V~~l~fsp-dg~~Latgs~Dg~-V~iwd~~~~~~~~~l~~h~~~V--~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~ 711 (918)
...++.+| ++..++.+-.-|+ ..+||..+++....+....+.- =.-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 44677888 5567777777665 6789999988887765432221 13489999999999743 58899999996
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
.-..+..+..|.-.-..|.+.||++.|++. +|-|.- ..++++. ++=....+-.+.+.|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVA---NGGI~T-hpd~GR~------------------kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVA---NGGIET-HPDSGRA------------------KLNLDTMQPSLVYLD 144 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEE---cCCCcc-CcccCce------------------ecChhhcCCceEEEe
Confidence 567778888887777889999999777744 333321 0111111 111223345677788
Q ss_pred CCCceEEEE--e--cCCCCCeEEEEEcCCCCEEEEEeCC--------eEEEEECCCCCCcceEE----EeccCCCceEEE
Q 002471 792 AETQACRLS--L--QGHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVH----ELSCNGNKFHSC 855 (918)
Q Consensus 792 ~~t~~~~~~--l--~~h~~~V~si~~spdg~~Las~s~d--------~I~iwdl~s~~~~~~i~----~~~~~~~~i~~i 855 (918)
.++++.+.. + ..|.-.|+.+++..+|..++..-.. -|.+++.... ...+. ....-.+.+-+|
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEE
Confidence 888887766 3 3377789999999999877655321 2455544321 11111 112235678999
Q ss_pred EEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 856 VFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 856 ~~sp~g~~l~s~s~d-g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
+++.++.++++.+-- +.+.+||..+++++....- ..+..++..+++ +++|.+..
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 999999988776654 5999999999998844322 235556655555 66665543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-06 Score=92.72 Aligned_cols=245 Identities=12% Similarity=0.087 Sum_probs=149.8
Q ss_pred cceeeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V 704 (918)
+|+....+.+|...|.+++|||... +|..++.+.+|+|.|+++...+..+..+ ..|++++|.-|.. +|+.|-..|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 5666667889999999999999776 7888999999999999999999999888 7899999998765 56677779999
Q ss_pred EEEeCCCCCceeEEecc--CCCCeeEEEEcC------CCCeEEEEEeCCCcEEEEEcCCC----eeeEEeecCc--eEEE
Q 002471 705 RVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKGGT--AQMR 770 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~--h~~~V~sl~fsp------~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~~~--~~v~ 770 (918)
.|||++.+...+..+.+ ...+|..|+.-+ .+. +++... -.+..|++... .++..+.... ..+.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~l--t~l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFAL--TVLQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeee--hhhhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999976655444433 234455444332 233 332332 23556665432 2222232222 2333
Q ss_pred EecCCCEEEEEEcCC--------eEEEEECCCceEEEEec-CC-CCC------eEEEEEcCCCCEEEEEeCC--eEEEEE
Q 002471 771 FQPHLGRYLAAAAEN--------VVSILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRVWT 832 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg--------~I~i~D~~t~~~~~~l~-~h-~~~------V~si~~spdg~~Las~s~d--~I~iwd 832 (918)
+.+..+.+++....+ .+.-.|.++|..+...+ .+ ... -..+.-.++.++|+..+++ .+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 444446666655431 11122444444333221 12 111 0112223455677766666 899999
Q ss_pred CCCCCCcceEEEeccCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECC
Q 002471 833 VGSGSEGECVHELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 833 l~s~~~~~~i~~~~~~~~~i~~i~~-sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
..++ ..+..+... .+|..++. +-++..++..-.|..++||..+
T Consensus 418 ~~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 9887 455555443 56666654 3345555555566778887654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-07 Score=107.90 Aligned_cols=270 Identities=17% Similarity=0.174 Sum_probs=166.8
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~-~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
...-+.|.+++|......+..|+..|.+.-+-+...+....+..|.- .|..+..... -+++.+ +..++ +-.+ .+
T Consensus 51 ~~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~--~i~~ls-~~alr-~~~r-~g 125 (1118)
T KOG1275|consen 51 GASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTES--GIFTLS-KTALR-ATTR-QG 125 (1118)
T ss_pred ccccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhh--hheeee-HHHhh-hhhc-cC
Confidence 34455788888888777888888777766555444444444443321 1221111111 111111 11111 0000 01
Q ss_pred ceeEEeccCC--CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEE-ecCCCEEEEEEcCCeEEEE
Q 002471 714 YSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-QPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 714 ~~~~~~~~h~--~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~-sp~~~~ll~~~~dg~I~i~ 790 (918)
.++..+.... .-...+... ...++.|+.-..+..+|+++.+..+...-....+.+ ..++..+++|...|+|.+-
T Consensus 126 l~~~~~~~~s~~~M~~~~~~~---~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 126 LPVFDFTCPSMTKMASSLHMG---PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLR 202 (1118)
T ss_pred ceeecccCCCHHHHHHHhccC---CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEee
Confidence 1211111110 111112222 223447777888999999999888776644422333 3444677778889999999
Q ss_pred ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----------eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 791 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 791 D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
|.++.+.++++..|.+.|..+.. .|++|++|+.. -|+|||+|.-+....+... .++ .-+.|+|.
T Consensus 203 D~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P-~flrf~Ps 276 (1118)
T KOG1275|consen 203 DPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGP-QFLRFHPS 276 (1118)
T ss_pred cCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cCc-hhhhhccc
Confidence 99999999999999999986655 48999988743 4899999876444333321 111 34567776
Q ss_pred C-CEEEEEEcCCeEEEEE---CCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 861 Y-PSLLVIGCYQSLELWN---MSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 861 g-~~l~s~s~dg~I~vwd---~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
. ..+++++..|.+.+-| +.+...- .+......+..+++++++..++.|..+|.|.+|.
T Consensus 277 l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 277 LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4 4688888999999988 4333222 3334445599999999999999999999999994
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-06 Score=87.49 Aligned_cols=209 Identities=14% Similarity=0.104 Sum_probs=129.5
Q ss_pred CCCeEEEEeCCCCCceeEEeccC--CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC--ceEEEEecCC
Q 002471 700 FDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHL 775 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~ 775 (918)
.+|+|..||..+ ++.+....-- .....+.. .++++.++ +++.++.|+.||+.+++.+..+... .... ....+
T Consensus 1 ~~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~-~~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRT-GKELWSYDLGPGIGGPVATA-VPDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDG 76 (238)
T ss_dssp -TSEEEEEETTT-TEEEEEEECSSSCSSEEETE-EEETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEET
T ss_pred CCCEEEEEECCC-CCEEEEEECCCCCCCccceE-EEeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccce-eeecc
Confidence 368899999987 5555444321 12222112 22345555 6678999999999999988777642 1111 24456
Q ss_pred CEEEEEEcCCeEEEEECCCceEEEEe-cCCCC---CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCC
Q 002471 776 GRYLAAAAENVVSILDAETQACRLSL-QGHTK---PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~~~~~l-~~h~~---~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
+.++++..++.|+.+|.++++.+..+ ..... .........++..++++..+ .|..+|++++ +.+........
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~ 153 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEP 153 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCC
Confidence 77888888899999999999999884 33211 11222233337777777755 9999999988 44444433221
Q ss_pred c----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 851 K----------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 851 ~----------i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
. +..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|+.++.|+.|.+||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1 1122222344 78888888854444999999763 2223333332 346777888888999999886
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-08 Score=114.74 Aligned_cols=201 Identities=15% Similarity=0.279 Sum_probs=147.8
Q ss_pred CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC-c
Q 002471 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-E 747 (918)
Q Consensus 669 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-~ 747 (918)
..+..++|+.|....+|++|+-+.+.|++|+..|.|++|++.+ +.......+|...|+-|.-+.+|..++.+++... .
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCch
Confidence 4566777888999999999999999999999999999999998 6677888899999999999999988776665554 6
Q ss_pred EEEEEcCC-CeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec-C---CCCCeEEEEEcCCCCEEEE
Q 002471 748 IRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-G---HTKPIDSVCWDPSGELLAS 822 (918)
Q Consensus 748 I~iwdl~~-~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~---h~~~V~si~~spdg~~Las 822 (918)
.-+|++.. +...+.|. ...++.|+.....-+.|+......|||+.++.++.++. + ....-+++.|+|+..+++-
T Consensus 1169 saLW~~~s~~~~~Hsf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred HHHhccccccCcccccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 78999865 23344443 34567777766666667777889999999987665532 1 2223367889998887753
Q ss_pred EeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 823 VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 823 ~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
- -.+||++... .++.|.... ....-.|||.|..+++-+ .|||+++.+.+
T Consensus 1248 d----GvLWDvR~~~---aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 D----GVLWDVRIPE---AIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred C----ceeeeeccHH---HHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 2 2589998763 333333212 112236999999888866 48999887655
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=99.55 Aligned_cols=147 Identities=14% Similarity=0.218 Sum_probs=117.6
Q ss_pred EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----CceeEEeccCCCCeeEE
Q 002471 654 ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLRTFMGHSASVMSL 729 (918)
Q Consensus 654 atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~----~~~~~~~~~h~~~V~sl 729 (918)
++.+.+-.|-+-|++++-. ..|. .++.|.++.|.-.+.+++.|+..|.|.++|++.. +.+...+. |...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 4555677888889887643 2333 5678999999998999999999999999999874 44555554 89999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCee---eEEeecCceEE-----EEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQM-----RFQPHLGRYLAAAAENVVSILDAETQACRLSL 801 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v-----~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 801 (918)
.........|.+.+.+|+|++||++.-++ +..+.+++... .+.+..+.+++++.|...+||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 87763344555888999999999998877 88888887654 45667789999999999999999999988877
Q ss_pred cC
Q 002471 802 QG 803 (918)
Q Consensus 802 ~~ 803 (918)
..
T Consensus 385 pf 386 (425)
T KOG2695|consen 385 PF 386 (425)
T ss_pred CC
Confidence 64
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.7e-07 Score=90.45 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=108.7
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeeEeccCCCCeEEEEECCCCCEEEEEeC-----CC
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSF-----DK 702 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg 702 (918)
....++..|.++-.+-+.+--++.++++..||.+.+++.+... ....+..-...-.+.++...++.|.++.. -+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 3444455666666666666677899999999999999987521 12222221112223333334444444421 23
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee----EEeecCceEEEEecCC-CE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GR 777 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~----~~~~~~~~~v~~sp~~-~~ 777 (918)
..++|+++..+..+.... ....|.+++-+|.-.+++++|+.||.|-+||.+..... +..+..+..+.|+|.. ..
T Consensus 160 ~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 466777765332222222 23349999999998999999999999999999987432 2234567778899876 57
Q ss_pred EEEEEcCCeEEEEECCC
Q 002471 778 YLAAAAENVVSILDAET 794 (918)
Q Consensus 778 ll~~~~dg~I~i~D~~t 794 (918)
|++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 88999999999999765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-05 Score=92.05 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=125.2
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe
Q 002471 678 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (918)
Q Consensus 678 ~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~ 757 (918)
...-....+.++|+|+.+++ +.||...||.... .. ... .+....++|...+ . +|+-...+.|.|+.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r-~k~----~G~g~~~vw~~~n-~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WR-NKA----FGSGLSFVWSSRN-R-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TE-EEE----EEE-SEEEE-TSS-E-EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Cc-ccc----cCceeEEEEecCc-c-EEEEECCCeEEEEEcCccc
Confidence 34455789999999999988 4577788887432 11 111 2345568898843 3 4466668899997433333
Q ss_pred eeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC-
Q 002471 758 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG- 836 (918)
Q Consensus 758 ~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~- 836 (918)
..+.+......-.+.. +.++....++.|.+||+.+++.+..+... .|..|.|+++|++++..+.+.+.|++....
T Consensus 101 ~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred cceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence 3334444332222222 55666666669999999999999998743 389999999999999999998777775432
Q ss_pred -----C--CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002471 837 -----S--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 837 -----~--~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs 909 (918)
+ ....+..+......|.+.+|..+ .|+..+.. .|+. +..|+...+..-+.++.=+.+.+..+.|+...
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID 251 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence 0 01123333322567888899876 45544444 7776 55666666666677888888888778888888
Q ss_pred cCCcEEEe
Q 002471 910 HDKFVKLW 917 (918)
Q Consensus 910 ~Dg~I~IW 917 (918)
.|+.|..+
T Consensus 252 r~~~v~~~ 259 (443)
T PF04053_consen 252 RDGNVISY 259 (443)
T ss_dssp TT--EEEE
T ss_pred CCCCEEEE
Confidence 88888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.5e-07 Score=89.71 Aligned_cols=240 Identities=13% Similarity=0.160 Sum_probs=133.5
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCce------------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~------------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
|+.+.|+.+ ..|+++..++.+..+...++.+ .+.+..|.+.-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 444555433 3566666665555544333322 223333333333333334567899999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEE
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.+......+.+..-...-.+.++...++ +| .. +.+-.|+.- +..+
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i-~s---~~~g~~n~~------------------------------d~~~ 162 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SI-LS---GGCGNWNAQ------------------------------DNFY 162 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EE-ec---CCcceEeec------------------------------ccee
Confidence 8752111111111111112222333322 22 12 222233322 2233
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC-CCEEE
Q 002471 789 ILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT-YPSLL 865 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~-g~~l~ 865 (918)
+|+++-.+....-......|.+++-+|.-. ++++|++| .+-+||.+.. ...+..+..|+.+++.+.|||. +..|+
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchhee
Confidence 444433222111111223489999999666 56666667 8999999876 3556677889999999999995 57899
Q ss_pred EEEcCCeEEEEECCCCcEEE---Eccc-----CCCeEE--------------E-EEeCCCCEEEEEecCCcEEEeC
Q 002471 866 VIGCYQSLELWNMSENKTMT---LTAH-----EGLIAA--------------L-AVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 866 s~s~dg~I~vwd~~~~~~~~---~~~h-----~~~V~~--------------l-a~spdg~~Lasgs~Dg~I~IWd 918 (918)
++++||.+..||..+.-+-. ...| .++|.+ + .|.--|..|++|++-+-|++++
T Consensus 241 t~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 241 TCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999999987532110 0000 111111 1 2344567899999989998875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-05 Score=96.45 Aligned_cols=241 Identities=13% Similarity=0.155 Sum_probs=152.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---Cc
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP---GY 714 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~---~~ 714 (918)
.+.|.++.|.-++.-|+.+..+|.|.+-|.++.. ......-...|.+++|+||...|+..+.+++|.+-+-.=. ..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4689999999999999999999999999877654 3333345678999999999999999998888776543210 01
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---EeecCceEEEEecCCCEEEEEEc----C-Ce
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQPHLGRYLAAAA----E-NV 786 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~sp~~~~ll~~~~----d-g~ 786 (918)
.+..-....+....+-|-.....+ -|+ .|.....+........ ....+...+.|.-||.++++... + ..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 110001111223334443322111 111 2222222221111110 12345567899999888877432 3 78
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002471 787 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
|+|||.+ +..-.+-.....--.+++|-|.|.++++...+ .|.+|.-+.-........+.....++..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999988 43332222233445689999999999886432 699998765444444444445455699999999999
Q ss_pred EEEEE---EcCCeEEEEECCCCcE
Q 002471 863 SLLVI---GCYQSLELWNMSENKT 883 (918)
Q Consensus 863 ~l~s~---s~dg~I~vwd~~~~~~ 883 (918)
.|++. .....|++|-+.+...
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEE
Confidence 98884 3444699999877653
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-05 Score=86.26 Aligned_cols=256 Identities=15% Similarity=0.163 Sum_probs=152.3
Q ss_pred ccCCCEEEEEe---------CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 647 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 647 spdg~~Latgs---------~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.||... ++.|.++++.++ ...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC-CeEE
Confidence 67888877743 346789999998765544444 67789999999999999887 578999998763 2221
Q ss_pred -Eecc-------C---------CCCeeEEEEcCCCCeEEEEEeCCCcEEEEE----------------------------
Q 002471 718 -TFMG-------H---------SASVMSLDFHPNKDDLICSCDGDGEIRYWS---------------------------- 752 (918)
Q Consensus 718 -~~~~-------h---------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd---------------------------- 752 (918)
+..+ - -+.-..+.|+||+..|++.--++..|+.+.
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 2222 0 122356889999998876655555444443
Q ss_pred -------cCCCeeeEEe-e-------cCceEEEEecCCCEEEEEEcC-----CeEEEEECCCceEEEEecC-CCCCe---
Q 002471 753 -------INNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI--- 808 (918)
Q Consensus 753 -------l~~~~~~~~~-~-------~~~~~v~~sp~~~~ll~~~~d-----g~I~i~D~~t~~~~~~l~~-h~~~V--- 808 (918)
+.+++....- . .-...+.|.+++..+++.-.+ -.+.++|..++.+...+.. ....|
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 3333221100 0 012346788887745554432 2567778877654433322 22232
Q ss_pred EEEEEc-CCCC-EEEEEeCC---eEEEEECCCCCCcceEEEeccCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEE
Q 002471 809 DSVCWD-PSGE-LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWN 877 (918)
Q Consensus 809 ~si~~s-pdg~-~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i~~-i~~sp~g~~l~s~s~d-----g~I~vwd 877 (918)
..+.|. +++. +|.....+ .|.+++...+. ...+......|.. +.+++++..|+..+.. ..|+..+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~----~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK----PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE----EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccc----eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 355665 6666 44444444 68888886652 4455555566754 6788888777655543 2677778
Q ss_pred CC-CCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002471 878 MS-ENKTMTLTAHEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 878 ~~-~~~~~~~~~h~~~V~~la~spdg~~Lasgs 909 (918)
+. .+....+....+....+.|+|++++++-.+
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 88 667666665555447999999999877544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-06 Score=92.81 Aligned_cols=158 Identities=13% Similarity=0.127 Sum_probs=106.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----eeeEeccCCCCeEEEEECCCCCEEEEE---eCCCeEEEEeCCCC
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRFSPSMPRLATS---SFDKTVRVWDADNP 712 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~----~~~~l~~h~~~V~~l~fspdg~~Lasg---s~Dg~V~Iwdl~~~ 712 (918)
.+..+.+++++++||++..++...++++.... ++..+. -...-+.+.|..+...+..+ ++...+.+|.+..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 35556678888899988888887777765322 222222 22233445555555554444 4445556666553
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-C---ceEEEEecCCCEEEEEEcCCeEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-G---TAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~---~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.+.+.+.||-..++.|+|+||+. +|++++.|..|||-....--.+..|-. + +..+++.++ ..|++++.|++|+
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 45666779999999999999976 555999999999988776555555432 2 334444443 4478999999999
Q ss_pred EEECCCceEEEEec
Q 002471 789 ILDAETQACRLSLQ 802 (918)
Q Consensus 789 i~D~~t~~~~~~l~ 802 (918)
+||+++++++.++.
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999886653
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.9e-05 Score=76.20 Aligned_cols=255 Identities=14% Similarity=0.104 Sum_probs=133.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 728 (918)
-|++++.|++.|.+++.+++++.....+.....--......+++..|.+|+.|++.+..|.++ ..++...+.......+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 467899999999999999999987777764333222334566888999999999999999998 5566655544443334
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCee--eEEee--cCc--eEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec
Q 002471 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVFK--GGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 802 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~~--~~~--~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 802 (918)
-+..+-...++ .+...|.|.--..+.... +..+. +++ ..++. +..+..++-||.+.-+| ..++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 44555333344 444456666555555421 11111 111 00111 23344455566666666 4455554333
Q ss_pred CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeccCCCceEEEEEeC----CCCEEEEE
Q 002471 803 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI 867 (918)
Q Consensus 803 ~h~~~V~s-i~~s-pdg~~Las~s~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp----~g~~l~s~ 867 (918)
..++|.. -+-+ |....|+.+.++ .-.+|...++.. .+..- .+-....++. ..++|..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t---~~vy~---~p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTT---LHVYL---SPKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcE---EEEEe---CcccceeccCCCCcchhhhhhh
Confidence 2222211 1111 222333333333 344666655411 11110 0000112221 13456777
Q ss_pred EcCCeEEEEECCCCcEEEEcccCCCe---EEEE-----E-eC---CCCEEEEEecCCcEEEeC
Q 002471 868 GCYQSLELWNMSENKTMTLTAHEGLI---AALA-----V-ST---ETGYVASASHDKFVKLWK 918 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~~~~~h~~~V---~~la-----~-sp---dg~~Lasgs~Dg~I~IWd 918 (918)
+.||++.|.-.+.. +.....|.+.+ ..+. | +| +| +|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence 88898888743322 12223333322 2221 1 22 34 577888999999986
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.7e-07 Score=95.73 Aligned_cols=233 Identities=12% Similarity=0.142 Sum_probs=161.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC-CCcEEEEEcC
Q 002471 678 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSIN 754 (918)
Q Consensus 678 ~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~ 754 (918)
-|.+.|+.+.-. -.+++++++.||.++.|.-.. +-..+..+..|...|.+++.+-++ .+++|.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 367777766544 456999999999999997653 223456677888999999988875 57778666 9999999998
Q ss_pred CCeeeEEeec--CceEEEEecCCC----EEEEEE-cCCeEEEEECCCce--EEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 755 NGSCTRVFKG--GTAQMRFQPHLG----RYLAAA-AENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 755 ~~~~~~~~~~--~~~~v~~sp~~~----~ll~~~-~dg~I~i~D~~t~~--~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
+-..+.-++. -...++|....+ .+++.. .++.|.++|-.... ....-.-|..+|.++.+.+.+..+++...
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 8765543332 112223322222 233332 37899999987653 33444559999999999999999988887
Q ss_pred C-eEEEEECCC-CC-----------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-----
Q 002471 826 D-SVRVWTVGS-GS-----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT----- 887 (918)
Q Consensus 826 d-~I~iwdl~s-~~-----------~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~----- 887 (918)
. .|..|.... .. ....+..+........++.|+|++..+.+.+.|..|+++++++++++...
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 7 899998863 10 01112233334566789999999999999999999999999998754110
Q ss_pred ----------------------------ccCC-CeEEEEEeCCCCEEEEEecCC
Q 002471 888 ----------------------------AHEG-LIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 888 ----------------------------~h~~-~V~~la~spdg~~Lasgs~Dg 912 (918)
.|.. .-+.++|+..+++|+.|+-=|
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 1222 234678888899888776433
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-05 Score=82.40 Aligned_cols=268 Identities=14% Similarity=0.108 Sum_probs=136.5
Q ss_pred EEEccCCCEEEEEeC-CC--cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEec
Q 002471 644 CHFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 644 l~fspdg~~Latgs~-Dg--~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
=+|..||+.|+.++. || .+++.|+++++....-.+.........++++++.|+....+..|+-.|+++ .+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEE
Confidence 357889976665554 54 566778888775554443323333566778888887776677899999998 44445555
Q ss_pred cCCCCeeEEEEcCC-CCeEEEEEe----------------------CCCcEEEEEcCCCeeeEEeecC--ceEEEEecCC
Q 002471 721 GHSASVMSLDFHPN-KDDLICSCD----------------------GDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHL 775 (918)
Q Consensus 721 ~h~~~V~sl~fsp~-~~~ll~sgs----------------------~Dg~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~ 775 (918)
.....+-...|..+ +..+++.+- -.+.|...|+.+++....+... ...+.|+|..
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 55666655666422 222332211 1345677788888766666544 3678899998
Q ss_pred CEEEEEEcCC-----eEEEEECCC-ceEEEEecCCC--CCeEEEEEcCCCCEEEEEe-----CC-eEEEEECCCCCCcce
Q 002471 776 GRYLAAAAEN-----VVSILDAET-QACRLSLQGHT--KPIDSVCWDPSGELLASVS-----ED-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 776 ~~ll~~~~dg-----~I~i~D~~t-~~~~~~l~~h~--~~V~si~~spdg~~Las~s-----~d-~I~iwdl~s~~~~~~ 841 (918)
..+++-|-+| .-+||-+++ +.....+..+. ..+..=-|.+||..|.--+ .+ .|.-+|+.+++. ..
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eE
Confidence 8888877644 124554332 23333333332 2344456899999555432 23 577788887643 22
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCcEEEEcccCC-----------CeE
Q 002471 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEG-----------LIA 894 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg----------------~I~vwd~~~~~~~~~~~h~~-----------~V~ 894 (918)
+... .....+-.++||++++-=+.|. -|+++++..+....+..|.. .=-
T Consensus 279 ~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 279 LMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred EEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2222 1344555678888665544432 56778888877664444432 123
Q ss_pred EEEEeCCCCEEEEEe-cCCcEEEe
Q 002471 895 ALAVSTETGYVASAS-HDKFVKLW 917 (918)
Q Consensus 895 ~la~spdg~~Lasgs-~Dg~I~IW 917 (918)
...|+||+++|+..| ..|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 578999999866554 57776665
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-05 Score=81.43 Aligned_cols=180 Identities=16% Similarity=0.144 Sum_probs=111.5
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-------CCCCeEEEEECCC------CCEEEEEeCCCeEEE
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPS------MPRLATSSFDKTVRV 706 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-------h~~~V~~l~fspd------g~~Lasgs~Dg~V~I 706 (918)
.=+-++||||+.+||.+...|+|+|||+.... +..+.. -...|..+.|.+- ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 45678999999999999999999999987533 333322 2356777777652 225777778888888
Q ss_pred EeCCC----CCceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCc----------EEEEEcCCCeeeEEeecCceEE
Q 002471 707 WDADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGE----------IRYWSINNGSCTRVFKGGTAQM 769 (918)
Q Consensus 707 wdl~~----~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~----------I~iwdl~~~~~~~~~~~~~~~v 769 (918)
|-+.. +......|. .+...|.++.|+|...-|++.|..... +..|.+-++.....
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk-------- 195 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK-------- 195 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE--------
Confidence 77632 122223322 357789999999997766655554432 33333322221110
Q ss_pred EEecCCCEEEEEEcCC------eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002471 770 RFQPHLGRYLAAAAEN------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 836 (918)
Q Consensus 770 ~~sp~~~~ll~~~~dg------~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 836 (918)
.+....|+ +..+|.+-+.+...........|..+..+|||.+||+...+ .|.+|++-+-
T Consensus 196 --------~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 196 --------QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred --------EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 01111111 11233332222222222356789999999999999999988 9999999654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.3e-06 Score=97.58 Aligned_cols=180 Identities=18% Similarity=0.237 Sum_probs=127.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
.+.+.|++++ +++|+.|+.+|.|++++.... . .+...|+.. .-+|.++++|+.||+|.|..+.++. ...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~-~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD-EIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc-cce
Confidence 5678888887 569999999999999997633 2 333344433 5589999999999999999998743 333
Q ss_pred EeccCCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEEcCC---Ce--eeEEeecCceEEEEecCCCEEEEEEcCCeEE
Q 002471 718 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINN---GS--CTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~---~~--~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.+. ...++.+|+++|+ ....+++|+.-| +.++.-+- .. ....-.|.+.++.|. +.+++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence 333 5578999999998 223455888888 77765321 11 223334566667765 5678888888899
Q ss_pred EEECCCceEEEEecCCCCCe------EEEEEcCCCCEEEEEeCCeEEEEECC
Q 002471 789 ILDAETQACRLSLQGHTKPI------DSVCWDPSGELLASVSEDSVRVWTVG 834 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~V------~si~~spdg~~Las~s~d~I~iwdl~ 834 (918)
+||+.+...+..+......+ ..+.|.+ ...|+.|-.|+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEEEEEe
Confidence 99999988877765433332 3567765 456777888889998887
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.1e-05 Score=88.60 Aligned_cols=256 Identities=12% Similarity=0.112 Sum_probs=148.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCC------CeE--EEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEecc
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS------LIT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 721 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~------~V~--~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~ 721 (918)
+..+++++.++.|+-+|..+++.+..+..... .+. .+.+. ++..++.++.++.|+.+|.++ ++.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 44677777889999999999988877654332 010 11111 226888888999999999998 454444432
Q ss_pred CCCC-----ee-EEEEcCCCCeEEEEEe---------CCCcEEEEEcCCCeeeEEeecCc--------------------
Q 002471 722 HSAS-----VM-SLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT-------------------- 766 (918)
Q Consensus 722 h~~~-----V~-sl~fsp~~~~ll~sgs---------~Dg~I~iwdl~~~~~~~~~~~~~-------------------- 766 (918)
.... |. +..+. +..++ .++ .+|.|..+|..+++.+..+....
T Consensus 139 ~~~~~~~~~i~ssP~v~--~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEE--CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2210 11 12222 23333 443 46889999999999887765321
Q ss_pred ----eEEEEecCCCEEEEEEcCC------------------eEEEEECCCceEEEEecCCCCCe------EEEEEc----
Q 002471 767 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPI------DSVCWD---- 814 (918)
Q Consensus 767 ----~~v~~sp~~~~ll~~~~dg------------------~I~i~D~~t~~~~~~l~~h~~~V------~si~~s---- 814 (918)
....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+ ....+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0133444567788887654 79999999999998875321111 001111
Q ss_pred CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 002471 815 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS 872 (918)
Q Consensus 815 pdg~---~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~------------------s~dg~ 872 (918)
-++. ++++++.+ .+..+|.++++. +...... ...+..+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~---~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKL---ISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcE---eeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1343 56666666 899999998843 3222111 11122333 233332 23578
Q ss_pred EEEEECCCCcEEEEcccC---------CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 873 LELWNMSENKTMTLTAHE---------GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 873 I~vwd~~~~~~~~~~~h~---------~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|.-+|+.+++.+-..... .....-.....+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 889999999887222111 1111111112456788888899888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-05 Score=89.79 Aligned_cols=255 Identities=14% Similarity=0.094 Sum_probs=149.3
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCceeeEecc-CCCCeEEEE-------------------ECCCCCEEEEEe-CCCeEE
Q 002471 648 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVR-------------------FSPSMPRLATSS-FDKTVR 705 (918)
Q Consensus 648 pdg~~Latgs~-Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~-------------------fspdg~~Lasgs-~Dg~V~ 705 (918)
-||+||+.-.. ...|...+++..++...+.. ....+..++ +.+||+.+...+ ..+.|.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888888764 55677777776666555442 112233333 344555443222 245666
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~ 782 (918)
+.|.++ .+....+.- ......+.++++++.+++++. ...++...+..+...+..|.-.. ...+..++++.++
T Consensus 219 vID~et-meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAET-MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECcc-ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence 777765 333333321 223456788899888876652 22345444444333333332111 1123445665554
Q ss_pred cCCeEEEEECCC-----ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC---------cceEEEec
Q 002471 783 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS 846 (918)
Q Consensus 783 ~dg~I~i~D~~t-----~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~---------~~~i~~~~ 846 (918)
.++.|.++|.++ .+.+..+. -......|.++|||+++++++.- +|.|+|+.+... ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 467899999998 34444444 45667899999999988877764 999999987532 11233333
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CcEE-EEcccCCCe-----EEEEEeCCCCEEEEEe
Q 002471 847 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE----------NKTM-TLTAHEGLI-----AALAVSTETGYVASAS 909 (918)
Q Consensus 847 ~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~----------~~~~-~~~~h~~~V-----~~la~spdg~~Lasgs 909 (918)
. +..-...+|.++|..+.+.--|..|..||+.. ..++ .+..|-.+. ..=.-.+||+||++.+
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 3 33344568899998888888899999999876 2233 233333222 1222367888888764
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-07 Score=105.25 Aligned_cols=241 Identities=13% Similarity=0.152 Sum_probs=152.0
Q ss_pred CCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECC-CCCEEEEEe----CCCeEEEE
Q 002471 637 STSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP-SMPRLATSS----FDKTVRVW 707 (918)
Q Consensus 637 H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~fsp-dg~~Lasgs----~Dg~V~Iw 707 (918)
.+..+.|+++.-+. -++++|..+|.|.+-.+.... ......+|...+++++|++ |.+.||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34567888876644 478899999999998876322 2345567888999999998 556777773 26679999
Q ss_pred eCCCCC----ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeec-CceEEEEecCCCEEEEE
Q 002471 708 DADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG-GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 708 dl~~~~----~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~-~~~~v~~sp~~~~ll~~ 781 (918)
|+.+.- .......+......++||..+ ..++.+|.....|.++|++-. .....+.. .+..+.+.|....+++.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 998631 111111224455668999866 456668988899999999832 22222222 34556778866777778
Q ss_pred EcCCeEEEEE-CCCceE-EEEecCCC----CCeEEEEEcCCCC-EEEEEeCC--eEEEEECCCCCC------cceEEE--
Q 002471 782 AAENVVSILD-AETQAC-RLSLQGHT----KPIDSVCWDPSGE-LLASVSED--SVRVWTVGSGSE------GECVHE-- 844 (918)
Q Consensus 782 ~~dg~I~i~D-~~t~~~-~~~l~~h~----~~V~si~~spdg~-~Las~s~d--~I~iwdl~s~~~------~~~i~~-- 844 (918)
..||.|.+|| .+.-+. +..+...+ ..+..++|+|... ++++...| +|++||+..... ...+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 8899999999 333322 22222112 2489999999666 77777777 899999864211 111111
Q ss_pred ---eccCC--CceEEEEEeCCC--CEEEEEEcCCeEEEEEC
Q 002471 845 ---LSCNG--NKFHSCVFHPTY--PSLLVIGCYQSLELWNM 878 (918)
Q Consensus 845 ---~~~~~--~~i~~i~~sp~g--~~l~s~s~dg~I~vwd~ 878 (918)
+...+ ..|.+..||+.. ...+++...-.+.-|++
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 11222 457777777755 23444444444444444
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.8e-06 Score=96.41 Aligned_cols=179 Identities=20% Similarity=0.277 Sum_probs=138.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 728 (918)
++..++.|+.-..+..+|+.+.+..+........|+-++. ++++|.+|...|+|.+-|.++ -+.+.++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-Cceeeeeeccccceee
Confidence 4557888888889999999998887777766656766665 678999999999999999998 7889999999999999
Q ss_pred EEEcCCCCeEEEEEeC---------CCcEEEEEcCCCeeeEEee--cCceEEEEecCC-CEEEEEEcCCeEEEEECC---
Q 002471 729 LDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL-GRYLAAAAENVVSILDAE--- 793 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~---------Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~--- 793 (918)
+... | ++|++|+. |..|+|||++..+.+..+. .+..-+.|.|.- ..+++++..|.+.+.|..
T Consensus 223 fDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8886 3 35668765 5678999999887665543 233457778775 467777888999999943
Q ss_pred Cc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 794 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 794 t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
+. .-+..+......+..+++++++..++.+..+ .|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 32 2233333344569999999999999999888 9999973
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-06 Score=64.55 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd 666 (918)
+++.++++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.4e-05 Score=86.80 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=89.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
|...|.--+++..+++|+.|+.-|.|++|+-..+..... ..+-.+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344566667777889999999999999999776554333 2334555667778888888999999999999988753221
Q ss_pred ----eEE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002471 716 ----LRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (918)
Q Consensus 716 ----~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~ 755 (918)
+.. -..|...|++++|++++..++ +|+..|.|.+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 111 123788999999999988766 999999999988877
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.4e-05 Score=87.26 Aligned_cols=204 Identities=14% Similarity=0.259 Sum_probs=139.0
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC-----cEEEEEcCCC-----
Q 002471 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG----- 756 (918)
Q Consensus 687 ~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-----~I~iwdl~~~----- 756 (918)
+|++.+..+|.|+.+|.|.+.+-. -..++.+..+...|...-|.-++..++++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 456788899999999988777653 3455777777777444555666656666766664 4999998753
Q ss_pred -eee---EEee-------cCceEEEEecCCCEEEEEEcCCeEEEEECCC----ceEEEEecCCCCCeEEEEEcCCCCE-E
Q 002471 757 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPSGEL-L 820 (918)
Q Consensus 757 -~~~---~~~~-------~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t----~~~~~~l~~h~~~V~si~~spdg~~-L 820 (918)
.|+ +.+. ....+++++.+...+++|-.+|.|.++..+- +....-......+|+.+.+..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 244 2222 1346688888889999999999999985321 1111112234678999999999985 6
Q ss_pred EEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-ccCCCeEE
Q 002471 821 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AHEGLIAA 895 (918)
Q Consensus 821 as~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~-~h~~~V~~ 895 (918)
+++....|.+|.+. ++. .....+..++..+.|..+++....|++++ +..|++||....... .+. +|...+..
T Consensus 188 Fv~Tt~~V~~y~l~-gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 188 FVATTEQVMLYSLS-GRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEEecceeEEEEec-CCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 66666689999997 333 44566778888899999887666455444 457999998765433 555 55544433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00011 Score=85.81 Aligned_cols=211 Identities=13% Similarity=0.148 Sum_probs=139.1
Q ss_pred cccccCccceeeeeeecCCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC-eEEEEECCCCCEEEE
Q 002471 620 MDVSQGFSFKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLAT 697 (918)
Q Consensus 620 ~d~~~~~s~~~~~~l~~H~~-~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~-V~~l~fspdg~~Las 697 (918)
|+...-|.++++...+.-.+ .|.| |++.+..+|.|+.+|.|.+++- ..+.+..+..+... |..+.......+|++
T Consensus 6 WrrF~lFq~~~i~~~~~~~G~~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~s 82 (933)
T KOG2114|consen 6 WRRFSLFQWKEIPSLENFVGNAISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFS 82 (933)
T ss_pred cceeeeeeeeecCCcccCCCCceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEE
Confidence 33333334444433222233 4444 6778889999999999998873 44555778877777 444443334467888
Q ss_pred EeCCC-----eEEEEeCCCC-----Ccee---EEec----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC----C
Q 002471 698 SSFDK-----TVRVWDADNP-----GYSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----G 756 (918)
Q Consensus 698 gs~Dg-----~V~Iwdl~~~-----~~~~---~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~----~ 756 (918)
.+.|+ .|+|||++.- ..++ +.+. ....++.+|+.+.+ -..+|.|-.+|.|.++.-+- +
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccc
Confidence 77765 4999999742 1233 2222 13467888888887 44666888999999985321 1
Q ss_pred e-e--eEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 002471 757 S-C--TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 832 (918)
Q Consensus 757 ~-~--~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwd 832 (918)
. . ...-+.+++.+.+..++..++.+.....|.+|.+....+ ...+..|...+.|..|++...-|++++...|.+||
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 1 1 111245678888988888766667777888888874443 34466788889999998866557777777899999
Q ss_pred CC
Q 002471 833 VG 834 (918)
Q Consensus 833 l~ 834 (918)
..
T Consensus 242 sd 243 (933)
T KOG2114|consen 242 SD 243 (933)
T ss_pred CC
Confidence 86
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00061 Score=78.69 Aligned_cols=240 Identities=15% Similarity=0.135 Sum_probs=136.4
Q ss_pred CeEEEEEccCCCEEEEE-eCCC----cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC-----------e
Q 002471 640 KVICCHFSSDGKLLATG-GHDK----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------T 703 (918)
Q Consensus 640 ~V~~l~fspdg~~Latg-s~Dg----~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------~ 703 (918)
.+..+++||||++||.+ +..| .|+|+|+++++.+...-... ....+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999998865 3333 59999999997765432111 123399999988877665433 3
Q ss_pred EEEEeCCCCCce-eEEeccCCCC--eeEEEEcCCCCeEEEEEeCCC---cEEEEEcCCC-----eeeEEeec--CceEEE
Q 002471 704 VRVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGDG---EIRYWSINNG-----SCTRVFKG--GTAQMR 770 (918)
Q Consensus 704 V~Iwdl~~~~~~-~~~~~~h~~~--V~sl~fsp~~~~ll~sgs~Dg---~I~iwdl~~~-----~~~~~~~~--~~~~v~ 770 (918)
|++|++.++... ...+...... ...+..++++..+++...... .|++.|+..+ ........ ......
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 888888874333 3344443333 567889999998887665543 4888888874 22222221 222222
Q ss_pred EecCCCEEEEEEc----CCeEEEEECCCce---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC---eEEEEECCCCC
Q 002471 771 FQPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED---SVRVWTVGSGS 837 (918)
Q Consensus 771 ~sp~~~~ll~~~~----dg~I~i~D~~t~~---~~~~l~~h~~~--V~si~~spdg~-~Las~s~d---~I~iwdl~s~~ 837 (918)
.. .++.++..+. .+.|...++.... ....+..+... +..+... +. +++....+ .|++|++..+
T Consensus 284 ~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~- 359 (414)
T PF02897_consen 284 DH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDG- 359 (414)
T ss_dssp EE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-T-
T ss_pred Ec-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCC-
Confidence 22 2555554443 3578888888765 23344445553 4455443 44 44444444 7999999722
Q ss_pred CcceEEEecc-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEE
Q 002471 838 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 886 (918)
Q Consensus 838 ~~~~i~~~~~-~~~~i~~i~~sp~g~~l~s~s~d----g~I~vwd~~~~~~~~~ 886 (918)
.....+.. ..+.|..+...++...+...-.. .+|+.||+.+++...+
T Consensus 360 --~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 360 --KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp --EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred --cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 22222222 23445555555666554443332 4899999999887643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-05 Score=91.85 Aligned_cols=181 Identities=17% Similarity=0.258 Sum_probs=124.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 759 (918)
...++|++++ ++.|+.|+.+|.|++++... .. ++...|... ..+|. ++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3456777775 67999999999999999874 32 444445544 33444 6679999999999998877654
Q ss_pred --EEeecCceEEEEecC-----CCEEEEEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 002471 760 --RVFKGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV 830 (918)
Q Consensus 760 --~~~~~~~~~v~~sp~-----~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~i 830 (918)
..|+..+..++++|+ .+.+++|+.-| +.++.-+-. +.-..+..-.++|.+|+|. |+++|-++++.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 456778899999998 36788888888 777654321 1111345567899999998 88999998889999
Q ss_pred EECCCCCCcceEEEeccCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 831 WTVGSGSEGECVHELSCNGN------KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 831 wdl~s~~~~~~i~~~~~~~~------~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
||+.+... +..+..... .-..+.|.++.+ ++.|+..+|+|..++.
T Consensus 184 yd~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTRQR---LTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIKK 234 (846)
T ss_pred Eeccccce---eeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEec
Confidence 99987632 222221111 123456665543 4445566788887773
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-05 Score=92.14 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=85.1
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 642 ICCHFSSDGKLLATGG----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 642 ~~l~fspdg~~Latgs----~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
+-+.|+|...+||+++ ..|.|.||- ++|++-+... ..-.+++++|+|..-.|+.|=.-|.+.+|...+ .+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeee
Confidence 3457899998998887 357888884 5565444332 122367799999988899998899999999886 44555
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 754 (918)
....|..+|..+.|+++|..++ ++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence 5667999999999999988665 99999999999875
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00021 Score=76.38 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=135.8
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCeeeEEeecCc-----eEEEEecCCCEEEEEEc-----CCeEEEEECC
Q 002471 725 SVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKGGT-----AQMRFQPHLGRYLAAAA-----ENVVSILDAE 793 (918)
Q Consensus 725 ~V~sl~fsp~~~~ll~sgs~Dg~-I~iwdl~~~~~~~~~~~~~-----~~v~~sp~~~~ll~~~~-----dg~I~i~D~~ 793 (918)
....++.+|.....++.+-.-|+ ..+||..+++....+.... ....|++++.+|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 44568889977777777777665 6789999998887765432 24679999999998755 4799999999
Q ss_pred -CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEECCCCCCcceEEE--e--ccCC
Q 002471 794 -TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------SVRVWTVGSGSEGECVHE--L--SCNG 849 (918)
Q Consensus 794 -t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-------------------~I~iwdl~s~~~~~~i~~--~--~~~~ 849 (918)
+.+.+.++..|.-.-..+.+.|||+.|+++..+ .+.+.|..++ ..+.. + ..|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence 668888888888778889999999877766432 2445555655 33333 3 3466
Q ss_pred CceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCCcE-EE-----EcccCCCeEEEEEeCCCCEEEEE-ecCCcEE
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQ-------SLELWNMSENKT-MT-----LTAHEGLIAALAVSTETGYVASA-SHDKFVK 915 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg-------~I~vwd~~~~~~-~~-----~~~h~~~V~~la~spdg~~Lasg-s~Dg~I~ 915 (918)
..|..+++..+|..++..-..+ -|.+++....-. +. ...-.+.|-+|+++.++.+|++. -..+++.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 7899999999998666654443 355555444211 11 12345789999999999877554 4678899
Q ss_pred EeC
Q 002471 916 LWK 918 (918)
Q Consensus 916 IWd 918 (918)
+||
T Consensus 243 ~~d 245 (305)
T PF07433_consen 243 VWD 245 (305)
T ss_pred EEE
Confidence 995
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-06 Score=62.99 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=36.9
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0012 Score=71.46 Aligned_cols=255 Identities=11% Similarity=0.116 Sum_probs=154.9
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEeCCCCCceeEEeccC---C---
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH---S--- 723 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~Iwdl~~~~~~~~~~~~h---~--- 723 (918)
+.|+|+|.++++.+-.+..-- .-.+..+|+++.+++++ ..-.|.+||..+- .....+.-. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchhee
Confidence 479999999998887776422 33466799999988763 2345999999873 222222211 1
Q ss_pred -CCeeEEEEcCCCCeEEEE-EeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEE
Q 002471 724 -ASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS 800 (918)
Q Consensus 724 -~~V~sl~fsp~~~~ll~s-gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~~~~~ 800 (918)
.....+.++.+++++++. .+---.|.|.|+..++.+..+....+...+-.....|.+.|.||.+..+.+. .|+...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 122346777787766532 2234568899999999988887766555554444678899999999888877 4444322
Q ss_pred ----ecCCCCC-eEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeccC----------CCceEEEEEeCCCCEE
Q 002471 801 ----LQGHTKP-IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSL 864 (918)
Q Consensus 801 ----l~~h~~~-V~si~~spdg~-~Las~s~d~I~iwdl~s~~~~~~i~~~~~~----------~~~i~~i~~sp~g~~l 864 (918)
|.....+ +..-.+...+. ++.....+.|+-.|+.... ......+..- .+..--+++++....|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 1112222 22334444444 4444444488887876542 2222222110 1123346788877666
Q ss_pred EEEEcC--------C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-cCCcEEEeC
Q 002471 865 LVIGCY--------Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 918 (918)
Q Consensus 865 ~s~s~d--------g--~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~-~Lasgs-~Dg~I~IWd 918 (918)
++.-.. + .|.+||+.+++.+....-+..+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 665322 1 68888999999985555456688999998776 665544 578999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-06 Score=58.27 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcC
Q 002471 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36 (918)
Q Consensus 10 ~~l~~yiydyl~~~~~~~~a~a~~~e~ 36 (918)
+.||.+|||||+++|+.++|++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0017 Score=73.90 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=166.2
Q ss_pred EEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEE
Q 002471 662 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (918)
Q Consensus 662 V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 740 (918)
+.+++..+......+..+. ....+.+.+++..++.... ...+.+.+... .............-..+.+++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5556555555444444333 5667788888865554433 22455554441 2111111111133456888899888887
Q ss_pred EEeCCCcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc---CCeEEEEECCCceEEEEecCCCCCeEEEEEcC
Q 002471 741 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP 815 (918)
Q Consensus 741 sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp 815 (918)
+...++.|.+.|..+.++...... ....+.+.++++.++++.. ++.+.++|..+.+...+...-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999888887776653 4567899999988888776 689999999999888875544444 8899999
Q ss_pred CCCEEEEEeCC--eEEEEECCCCCCcc-eEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEc-c
Q 002471 816 SGELLASVSED--SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLT-A 888 (918)
Q Consensus 816 dg~~Las~s~d--~I~iwdl~s~~~~~-~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~~~~~~~~-~ 888 (918)
+|..++.+..+ .|.++|........ ...........-..+.+.+++.++++.... +.+.+.|..++...... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 99977766633 89999976542211 000011223345678899999987777655 48999999998887442 1
Q ss_pred cCC-CeEEEEEeCCCCEEEEEecC-CcEEE
Q 002471 889 HEG-LIAALAVSTETGYVASASHD-KFVKL 916 (918)
Q Consensus 889 h~~-~V~~la~spdg~~Lasgs~D-g~I~I 916 (918)
-.. ....+.++|+|+++...... +.|.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 111 56778899999988777433 44443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00012 Score=83.59 Aligned_cols=190 Identities=13% Similarity=0.242 Sum_probs=123.7
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCeeeEE--eecCceEEEEecCCCEEEEEEc-CC-
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA-EN- 785 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D---g~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~ll~~~~-dg- 785 (918)
+.....+..-...+..-+|++++..+.+..-.. ..|+++|+++++.... +.+......|+|++.+++.+.. |+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 444555555566777788999988876554333 3499999998865444 4566677889999988887765 44
Q ss_pred -eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 786 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 786 -~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
.|+++|+..+.... +....+.-+.-.|+|||++|+..++. .|.++|.+.... ..+......-..-.|+||
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence 67888988877443 44333444467899999988877655 577777765532 222222232336789999
Q ss_pred CCEEEEEEcC-C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002471 861 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 907 (918)
Q Consensus 861 g~~l~s~s~d-g--~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Las 907 (918)
|++|+..+.. | .|.++|+.++..+....+......-+|.++++.|+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9999988854 3 477788877664433333333444455555555443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-06 Score=90.02 Aligned_cols=126 Identities=20% Similarity=0.282 Sum_probs=99.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-----ceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~-----~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~ 710 (918)
..+.|.++.|.-.+.+++.|+..|.|.++|+... .+...+ -|...|+++..-. ++.+|++.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4567999999998999999999999999999743 333334 4888999998877 78899999999999999998
Q ss_pred CCCce---eEEeccCCCCeeEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeeEEeec
Q 002471 711 NPGYS---LRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFKG 764 (918)
Q Consensus 711 ~~~~~---~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~ 764 (918)
- .++ +..+.||...-.-+-++-+ .+.+|++++.|...|||.++.+..+.+++.
T Consensus 330 ~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 330 A-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred h-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 5 444 8888888765444444322 234666899999999999999998887654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0014 Score=74.76 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=70.3
Q ss_pred EEEEECCCCCCcceEEEe-ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEE
Q 002471 828 VRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 906 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~~-~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~La 906 (918)
.++|++...+ ..++... -.....+.+++++|+...|+.|+.||.|.+||...+... .....-.++.++|+|+|.+|+
T Consensus 238 ~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEE
Confidence 5677775432 2333222 234678999999999999999999999999999877544 334556789999999999999
Q ss_pred EEecCCcEEEeC
Q 002471 907 SASHDKFVKLWK 918 (918)
Q Consensus 907 sgs~Dg~I~IWd 918 (918)
+|+.-|.|.+||
T Consensus 316 V~s~qGelQ~FD 327 (545)
T PF11768_consen 316 VGSEQGELQCFD 327 (545)
T ss_pred EEcCCceEEEEE
Confidence 999999999997
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00023 Score=86.25 Aligned_cols=226 Identities=13% Similarity=0.170 Sum_probs=133.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 759 (918)
.+.|.++.|.-+..-|+.+..+|.|.+-|..+. .+.....-...|.+++|+||...+. ..+.+.+|.+-+- +...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLA-LITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEEec-cccch
Confidence 468999999999999999999999999988763 2333334567899999999977544 5555566655332 12211
Q ss_pred EEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCc----------eEEEEecCCCCCeEEEEEcCCCCEEEEEe-----
Q 002471 760 RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASVS----- 824 (918)
Q Consensus 760 ~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~----------~~~~~l~~h~~~V~si~~spdg~~Las~s----- 824 (918)
....... .-. ..+.++.++....=.-|....+ +.......-.+.=++|+|--||.++++..
T Consensus 144 ~E~~L~~---d~~-~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 144 AEKPLDA---DDE-RKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hcccccc---ccc-cccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 1111000 000 0112223332221111111111 10000001112235689999999998833
Q ss_pred C-CeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE----EEcccCCCeEEE
Q 002471 825 E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAAL 896 (918)
Q Consensus 825 ~-d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~---dg~I~vwd~~~~~~~----~~~~h~~~V~~l 896 (918)
. ..|+|||.+ + ..-..-....+.-.+++|-|.|..+++... |+.|.+|.-+.-+.- .+......|..+
T Consensus 220 ~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 3 279999976 2 111111122344568899999999988754 457999986654432 233334459999
Q ss_pred EEeCCCCEEEE---EecCCcEEEe
Q 002471 897 AVSTETGYVAS---ASHDKFVKLW 917 (918)
Q Consensus 897 a~spdg~~Las---gs~Dg~I~IW 917 (918)
+|+.++.+||. ......|++|
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eecCCCCceeeeecccccceEEEE
Confidence 99999999887 4444459998
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00063 Score=80.12 Aligned_cols=225 Identities=13% Similarity=0.156 Sum_probs=129.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCC--eEEEEECC--CCCEEEEEe---------CCCeEEEEeCCCCCceeE
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--ITDVRFSP--SMPRLATSS---------FDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~--V~~l~fsp--dg~~Lasgs---------~Dg~V~Iwdl~~~~~~~~ 717 (918)
..++.++.++.|+.+|.++++.+..+...... -..+.-+| .+..++.++ .+|.|..+|..++ +.+-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG-~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETG-KLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCC-ceee
Confidence 57888888999999999999998887644321 01111112 124555554 3678999999884 4443
Q ss_pred Eecc-CCC-------------------Cee-EEEEcCCCCeEEEEEeCCC------------------cEEEEEcCCCee
Q 002471 718 TFMG-HSA-------------------SVM-SLDFHPNKDDLICSCDGDG------------------EIRYWSINNGSC 758 (918)
Q Consensus 718 ~~~~-h~~-------------------~V~-sl~fsp~~~~ll~sgs~Dg------------------~I~iwdl~~~~~ 758 (918)
.+.. ... .|+ ...+.+.++ +++.++.++ .|..+|+++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 3322 110 011 233333334 344565454 799999999999
Q ss_pred eEEeecCce---------EEEEe----cCCC---EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEE
Q 002471 759 TRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 822 (918)
Q Consensus 759 ~~~~~~~~~---------~v~~s----p~~~---~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las 822 (918)
+..+..... ...+. -++. .+++++.+|.++.+|.++++.+...... ...+..+| +.+++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~ 344 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLG 344 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEc
Confidence 887753211 01111 1222 4667778999999999999998875421 11223333 222221
Q ss_pred E-----------------eCC-eEEEEECCCCCCcceEEEeccCC--------CceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 823 V-----------------SED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 823 ~-----------------s~d-~I~iwdl~s~~~~~~i~~~~~~~--------~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
. ..+ .|.-+|+.+++ .+....... .........-.+..|++++.|+.|+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 1 112 67777777763 232222110 111111112255678999999999999
Q ss_pred ECCCCcEE
Q 002471 877 NMSENKTM 884 (918)
Q Consensus 877 d~~~~~~~ 884 (918)
|..+++++
T Consensus 422 d~~tG~~l 429 (488)
T cd00216 422 DATTGKEL 429 (488)
T ss_pred ECCCCcee
Confidence 99999988
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00053 Score=79.79 Aligned_cols=181 Identities=8% Similarity=-0.041 Sum_probs=114.0
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEc----CCeEEEEECCCceEEEEecCCC
Q 002471 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHT 805 (918)
Q Consensus 732 sp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~----dg~I~i~D~~t~~~~~~l~~h~ 805 (918)
.++|..+..+.-..+.+.++|.++.+....+. +....+.++++++++++++. ..++...+..+...+..+.-
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni-- 278 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI-- 278 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--
Confidence 44554444444445677788888777666544 23345788899999888863 23455555444332222221
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC--CcceEEEeccCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCc
Q 002471 806 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGS--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENK 882 (918)
Q Consensus 806 ~~V~si~~spdg~~Las~s~d~I~iwdl~s~~--~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~-dg~I~vwd~~~~~ 882 (918)
..+. .+.++|++... ..++|.++|.++.. ....+..+. -....+.|.++|||+++++++. +.+|.|+|+.+.+
T Consensus 279 ~~ie--a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 279 ARIE--EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred HHHH--HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 1111 34467886665 34489999998710 112333333 3677889999999999888876 6799999998865
Q ss_pred E------------EEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 883 T------------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 883 ~------------~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
. +.-..-.-.-...+|+.+|....|---|..|..||
T Consensus 355 ~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 3 11111123344568899988777888899999996
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.002 Score=65.92 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=91.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE-
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS- 728 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s- 728 (918)
..+++.|+..+.+.-.|..+++.+.+-.- ...|.+-+.- -|+.++.|+..|.+++.++.++.. +..+... +.|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeeh-hhhccc
Confidence 35777888888888888888877655331 2223332222 467899999999999999998433 3333321 22222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce---EEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
....+++ .+|+.++.|++.+..|.++..++.+.+.+.. .-++.+-.+.++++...|.|.-...+..
T Consensus 99 a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 2233444 4778999999999999999999988764332 2345565566777777666655554443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0042 Score=67.41 Aligned_cols=237 Identities=14% Similarity=0.162 Sum_probs=143.1
Q ss_pred EEEEEccCCCEEEEEe----------CCCcEEEEECCCCceeeEeccCCC-------CeEEEEECCCCCEEEEEeC--CC
Q 002471 642 ICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSSF--DK 702 (918)
Q Consensus 642 ~~l~fspdg~~Latgs----------~Dg~V~iwd~~~~~~~~~l~~h~~-------~V~~l~fspdg~~Lasgs~--Dg 702 (918)
-.+..+||++.+++++ ..-.|.+||..+......+.-..+ ....+.++.|++++++... --
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3466789999888754 344799999999888776653322 1234577888888877644 45
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEe----ecCc----eEEEEec
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVF----KGGT----AQMRFQP 773 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~----~~~~----~~v~~sp 773 (918)
.|.|.|+.. ++.+..+.. .+ |..+ .|.++.-|.+-|.||.+....+. .|+..... .... ..-.+..
T Consensus 119 SVtVVDl~~-~kvv~ei~~-PG-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 119 SVTVVDLAA-KKVVGEIDT-PG-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEETTT-TEEEEEEEG-TS-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred eEEEEECCC-CceeeeecC-CC-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 688899987 555555442 22 2222 23333335577779999998887 44443221 1111 1233455
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEE--EecCC----------CCCeEEEEEcCCCCEEEEEe--------CC---eEEE
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRL--SLQGH----------TKPIDSVCWDPSGELLASVS--------ED---SVRV 830 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~--~l~~h----------~~~V~si~~spdg~~Las~s--------~d---~I~i 830 (918)
.++.++..+.+|.|+-.|+....... .+... .+...-+++++....|++.- .+ .|-+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 66788889999999999987664322 22110 12233467777555444321 12 4777
Q ss_pred EECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEEc
Q 002471 831 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTLT 887 (918)
Q Consensus 831 wdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~-~l~s~s-~dg~I~vwd~~~~~~~~~~ 887 (918)
||+.+. +.+..+.. ...+.++.++.+.+ +|++.+ .++.|.+||..+++.+...
T Consensus 274 ~D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 274 YDLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 888776 55655554 34577888888765 565554 4689999999999988433
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0011 Score=75.52 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=151.0
Q ss_pred CCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCCc
Q 002471 639 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY 714 (918)
Q Consensus 639 ~~V~~l~fspdg~~L-atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~ 714 (918)
..-.+++++++++.+ ++...++.|.+.|..+.+....+..-. .-..++|+++++.++++.. +++|.+.|..+ ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-Ce
Confidence 344578888888744 444456899999988777666655333 6778999999988877765 68888888887 44
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-E----e--ecCceEEEEecCCCEEEEEEcC---
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V----F--KGGTAQMRFQPHLGRYLAAAAE--- 784 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~----~--~~~~~~v~~sp~~~~ll~~~~d--- 784 (918)
.+.....-..+ ..+++.|++..++++-..++.|.++|.......+ . . ......+.+.+++.++++....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44444333334 8899999999888777789999999987776663 1 1 1234568899999977776654
Q ss_pred CeEEEEECCCceEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~-~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
+.+...|..++........-.. ....+.++|+|+++.+.... .+.+.|..+......+.........+..+++.+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 5999999999877765222222 56678999999977776443 88888887653333333333223335555555443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0019 Score=68.16 Aligned_cols=198 Identities=14% Similarity=0.178 Sum_probs=115.4
Q ss_pred eeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 631 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
...+.+-.+.|..|+|+|+.+ ++|+....+.|..++. +++.++++.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456666677799999999755 5666667788888886 47777776643 36688999988887777666699999999
Q ss_pred CCCCCce--e---EEec-----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEE-----------eec
Q 002471 709 ADNPGYS--L---RTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG 764 (918)
Q Consensus 709 l~~~~~~--~---~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~-----------~~~ 764 (918)
+...... . ..+. .+...+-.|+|.+.++.++++. +..-..+|.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence 8542221 1 1111 2445689999999988888554 455566666553 111111 112
Q ss_pred CceEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 002471 765 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW 831 (918)
Q Consensus 765 ~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~si~~spdg~~Las~s~d~I~iw 831 (918)
....+.++|..+.+++-+. ...|.++| .+|+.+..+.-.. ..-..|+|+++|++.++.-.+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4567889999888777666 56788888 6666655443222 24678999999987666544455544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00048 Score=78.80 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=123.7
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEeCCCCCce-eEEeccCCCCeeEEEEcCCCCeEEEEEeC
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSF---D-KTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDG 744 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs~ 744 (918)
+.....+..-...+..-+|++++..++..+. . ..|.++|++++... +..+.++ -....|+|||..++++...
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECC
Confidence 4555555555667788899999987665532 2 45999999874432 2333344 3447899999999988888
Q ss_pred CCc--EEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCeEEEEEcCCC
Q 002471 745 DGE--IRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 745 Dg~--I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg 817 (918)
||. |+++|+..+...+.. .+....-.|+|+|..++.++.. | .|.++|.+......... ....-..-.|+|||
T Consensus 259 dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~p~~SpdG 337 (425)
T COG0823 259 DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSNPVWSPDG 337 (425)
T ss_pred CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcCccCCCCC
Confidence 876 566677766643311 2233456799999998888763 3 57778888775533222 22222277899999
Q ss_pred CEEEEEeC--C--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 818 ELLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 818 ~~Las~s~--d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
++|+..+. + .|.++|+.++.. +..+. .......-.|.++++.++..+..+
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGK---IRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCc---EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 98887773 3 477777776643 22221 122333446777777766655443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.001 Score=76.31 Aligned_cols=219 Identities=12% Similarity=0.140 Sum_probs=116.9
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE-eCCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNP 712 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw-dl~~~ 712 (918)
+-...-....+.++|+|++++++ .||...||.....+.... +.....+|...+ .+|+-...++|.|+ ++++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~- 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN- 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc-
Confidence 33445568899999999999995 588888888544444332 234567888854 56666668889996 4432
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC-ceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
...+.+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++..++..+. ..++|++
T Consensus 100 -~~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~-~~i~il~ 171 (443)
T PF04053_consen 100 -EVVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTK-DSIYILK 171 (443)
T ss_dssp --TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred -ccceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeC-CeEEEEE
Confidence 22222221 123444433 44 443444 458999999999999999876 489999999777777764 4666655
Q ss_pred CCCc--------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 792 AETQ--------------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 792 ~~t~--------------~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
.... ..+.++ ...|.+.+|..+ .|+-.+...|+.+ ..| ....+..+ ..++.-+.+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkYl--~~G-e~~~i~~l---d~~~yllgy 240 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKYL--VNG-ETGIIAHL---DKPLYLLGY 240 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEEE--ETT-EEEEEEE----SS--EEEEE
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEEE--EcC-CcceEEEc---CCceEEEEE
Confidence 4322 333332 467999999966 4444444466663 222 11233332 445666667
Q ss_pred eCCCCEEEEEEcCCeEEEEECC
Q 002471 858 HPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
.+....+++...|+.|..+.+.
T Consensus 241 ~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTTTEEEEE-TT--EEEEE--
T ss_pred EccCCEEEEEECCCCEEEEEEC
Confidence 7766777777777777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0013 Score=74.61 Aligned_cols=258 Identities=13% Similarity=0.110 Sum_probs=134.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---CC---
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---PG--- 713 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~---~~--- 713 (918)
.|+++.|.++..-|++|...|.|.||.+...+... ......-....|.+ + ...++.-.|-|+.. +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c--cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876433221 00001111111111 0 00011122333321 11
Q ss_pred --ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--c---------CceEEEEec-----CC
Q 002471 714 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--G---------GTAQMRFQP-----HL 775 (918)
Q Consensus 714 --~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~---------~~~~v~~sp-----~~ 775 (918)
.+...+....++|++++.+.-| +++.|..+|.+.|.|+|....+..-. . .+.++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 2334455567999999998554 78899999999999999887765521 1 233455441 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-ce----EEEEecCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 002471 776 ---GRYLAAAAENVVSILDAE--T-QA----CRLSLQGHTKPIDSVC-WDPS---------------------GELLASV 823 (918)
Q Consensus 776 ---~~ll~~~~dg~I~i~D~~--t-~~----~~~~l~~h~~~V~si~-~spd---------------------g~~Las~ 823 (918)
-.+++|...|.+.+|.+. . +. .......+.+.|..|. |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 357888889999999764 1 21 1222224566666665 3221 1267777
Q ss_pred eCCeEEEEECCCCCCcceEEEeccCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc----cCCCe
Q 002471 824 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA----HEGLI 893 (918)
Q Consensus 824 s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~-----sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~----h~~~V 893 (918)
++..+||+...+. +..+...........+.+ ...+..|++...+|.|++|.+..-+.+ .+.- ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7779999998765 333333322223333444 235677888899999999999998877 2222 22345
Q ss_pred EEEEEeCCCCEEEEEec
Q 002471 894 AALAVSTETGYVASASH 910 (918)
Q Consensus 894 ~~la~spdg~~Lasgs~ 910 (918)
...+|+++|.+++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56777888887766554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0016 Score=68.77 Aligned_cols=197 Identities=16% Similarity=0.230 Sum_probs=110.1
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
.+.+-...+..|.|.|+.+.|+++....+.|..++.. ++.++.+. +....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445566799999999999999999999999999974 77777764 345678887655444433347889998873
Q ss_pred Cc------eEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--CCCcceEEE------eccCCCceE
Q 002471 794 TQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHE------LSCNGNKFH 853 (918)
Q Consensus 794 t~------~~~~~l~-----~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s--~~~~~~i~~------~~~~~~~i~ 853 (918)
.. .....+. .+...+..++|++.++.|+++-+. -..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1111111 244568999999987766666655 556666543 111111111 112234578
Q ss_pred EEEEeCCCCEEEEE-EcCCeEEEEECCCCcEE---EEcc--c-----CCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 854 SCVFHPTYPSLLVI-GCYQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 854 ~i~~sp~g~~l~s~-s~dg~I~vwd~~~~~~~---~~~~--h-----~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.+.++|....|++- ..+..|.++| ..|+.+ .+.. | -...-.|+|+++|++. ..++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 89999976655555 4556899999 556555 2222 1 1246789999998654 44566666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0015 Score=73.61 Aligned_cols=227 Identities=18% Similarity=0.193 Sum_probs=131.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cC----------------CCCeEEEEECCCCCEEEEEeC
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EH----------------SSLITDVRFSPSMPRLATSSF 700 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h----------------~~~V~~l~fspdg~~Lasgs~ 700 (918)
...+....|||+|+.||... ++.|+++++.++.....-. +. -+.-..+.|+||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 67899999999999999885 6899999987664332221 20 122356789999999987643
Q ss_pred C-Ce-----------------------------------EEEEeCCCCCc-eeEEe---ccCCCCeeEEEEcCCCCeEEE
Q 002471 701 D-KT-----------------------------------VRVWDADNPGY-SLRTF---MGHSASVMSLDFHPNKDDLIC 740 (918)
Q Consensus 701 D-g~-----------------------------------V~Iwdl~~~~~-~~~~~---~~h~~~V~sl~fsp~~~~ll~ 740 (918)
| .. +.|+|+.++.. .+... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 21 33344443221 11111 123456778889888774443
Q ss_pred -EEeCC---CcEEEEEcCCCeeeEEeec-------CceEEEEe-cCCCEEEEEE-cCC--eEEEEECCCceEEEEecCCC
Q 002471 741 -SCDGD---GEIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAAA-AEN--VVSILDAETQACRLSLQGHT 805 (918)
Q Consensus 741 -sgs~D---g~I~iwdl~~~~~~~~~~~-------~~~~v~~s-p~~~~ll~~~-~dg--~I~i~D~~t~~~~~~l~~h~ 805 (918)
....+ ..|.++|..++.+...+.. ......+. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 33333 3467778877665443321 12345554 6666655544 455 6777788777644 454445
Q ss_pred CCeEE-EEEcCCCCEEE-EEeCC-----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc
Q 002471 806 KPIDS-VCWDPSGELLA-SVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 869 (918)
Q Consensus 806 ~~V~s-i~~spdg~~La-s~s~d-----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~ 869 (918)
-.|.. +.|+++++.|+ ++..+ .|...++..+ ..+..+.+.......+.|+|++++++..+.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56644 67888877444 44432 4555666512 334445544444468999999998887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0056 Score=72.54 Aligned_cols=184 Identities=12% Similarity=0.064 Sum_probs=112.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeE---E-------EEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 718 (918)
+.+|++++.++.|+-+|..+++.+..+.... ..+. + +++ .+..|+.++.|+.|...|.++ ++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 4577777788899999999999888765321 1111 1 122 234677888899999999998 444433
Q ss_pred ecc--CC--CCeeE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeeEEeecCc----------------------
Q 002471 719 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------- 766 (918)
Q Consensus 719 ~~~--h~--~~V~s-l~fsp~~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~~---------------------- 766 (918)
+.. +. ..+.+ -.+. ++.+++..+ .+|.|+.+|.++++.+..+....
T Consensus 146 ~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 321 11 11111 1111 234443222 26899999999998876643210
Q ss_pred -------------eEEEEecCCCEEEEEEcC------------C----eEEEEECCCceEEEEecCCCCCe---------
Q 002471 767 -------------AQMRFQPHLGRYLAAAAE------------N----VVSILDAETQACRLSLQGHTKPI--------- 808 (918)
Q Consensus 767 -------------~~v~~sp~~~~ll~~~~d------------g----~I~i~D~~t~~~~~~l~~h~~~V--------- 808 (918)
..+.+.+..+.++.+... + .|.-.|+++++.+..+......+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 123566666777766521 1 67888999999988876522211
Q ss_pred EEEEEcCCCC---EEEEEeCC-eEEEEECCCCCC
Q 002471 809 DSVCWDPSGE---LLASVSED-SVRVWTVGSGSE 838 (918)
Q Consensus 809 ~si~~spdg~---~Las~s~d-~I~iwdl~s~~~ 838 (918)
.-+.+..+|+ .++.+..+ .+++.|.++++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 1222334666 66677777 899999988853
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0049 Score=66.78 Aligned_cols=221 Identities=16% Similarity=0.186 Sum_probs=124.0
Q ss_pred cCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE--------
Q 002471 648 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 718 (918)
Q Consensus 648 pdg~~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~-------- 718 (918)
..++.|+.|+.+| |+++++. ..+...... ...|..+...++-+.|++-+ |+.|+++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578999999888 9999983 333333332 22399999999877777665 599999998752211100
Q ss_pred -----eccCCCCeeEEE--EcCCCCeEEEEEeCCCcEEEEEcCCC-----eeeEEee--cCceEEEEecCCCEEEEEEcC
Q 002471 719 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 719 -----~~~h~~~V~sl~--fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~--~~~~~v~~sp~~~~ll~~~~d 784 (918)
.......|..++ -...+...++ +.....|.+|.+... +..+.+. .....+.|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223344444 1223344443 334568888887653 3344443 455667777 44555554 5
Q ss_pred CeEEEEECCCceEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCce
Q 002471 785 NVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h------------~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
+...++|+.++.....+... ..++..+.. +++.+|++. ++.-.+.|. .|.... ...+.- ....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~~g~fv~~-~G~~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DNIGVFVNK-NGEPSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cceEEEEcC-CCCcCc-ccEEEc-CCch
Confidence 56888899877554433211 123333333 345666543 333333344 332222 111211 2344
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
..+++ ..++|++.+. +.|.||++.+++++
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEE
Confidence 45555 3456776665 56999999999887
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=84.93 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=64.2
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..|+++..-|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5569999999999999999999999988877777778899999999999999999999999999999876
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0033 Score=68.09 Aligned_cols=215 Identities=15% Similarity=0.155 Sum_probs=123.6
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---------
Q 002471 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--------- 760 (918)
Q Consensus 690 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--------- 760 (918)
..++.|+.|+.+| |.++++.......+... ...|..|...++-+.+++-+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577999999999 99999943333333332 23399999999876666443 5999999987654333
Q ss_pred ------EeecCceEEEEe----cCCCEEEEEEcCCeEEEEECCCc-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 761 ------VFKGGTAQMRFQ----PHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 761 ------~~~~~~~~v~~s----p~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
.+.....+..|. ..+...+++.....|.+|..... +...++. -...+.+++|. ++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111111222232 44566777777778888876653 3444444 45778899998 677888888
Q ss_pred CeEEEEECCCCCCcceEEEeccCC---------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEE
Q 002471 826 DSVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAA 895 (918)
Q Consensus 826 d~I~iwdl~s~~~~~~i~~~~~~~---------~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~ 895 (918)
+...+.|+.++.... +....... .....+.--+++.+|++. +..-.+.|....... ....-...+..
T Consensus 157 ~~f~~idl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSE-LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred CceEEEecCCCCceE-EeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhE
Confidence 889999998764322 22111111 112222233345555442 333334444332221 11122334556
Q ss_pred EEEeCCCCEEEEEecCCcEEEeC
Q 002471 896 LAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 896 la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+++.. .||+..+.+ .|.||+
T Consensus 234 ~~~~~--pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 234 VAYSS--PYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEEC--CEEEEECCC-EEEEEE
Confidence 66533 377776654 488874
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.014 Score=67.04 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=99.8
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC-----ceeEEeccCCCCeeEEEEcCCC
Q 002471 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNK 735 (918)
Q Consensus 661 ~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-----~~~~~~~~h~~~V~sl~fsp~~ 735 (918)
.|.||+. .|+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+.... ..+....-....|..+.+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888885 45666666655589999999875 466677789999999996311 0111111112222222333233
Q ss_pred CeEEEEEeCCCcEEEEEcCCCe-eeEEe---ecCce----------EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002471 736 DDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 801 (918)
Q Consensus 736 ~~ll~sgs~Dg~I~iwdl~~~~-~~~~~---~~~~~----------~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 801 (918)
+++. ..++.|.+.+-.... ..+.+ ..... ...+..+....+....++.+.+.+....+. +
T Consensus 140 --ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 3322 234455444322221 11111 11000 012333444444445555555444332211 1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCC
Q 002471 802 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTY 861 (918)
Q Consensus 802 ~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g 861 (918)
. ..+++..+++||+|++||....+ .+.|++..-. +++.++... ......+.|.-+.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 1 24679999999999999988887 7777765332 334444333 3445566666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0062 Score=66.58 Aligned_cols=216 Identities=11% Similarity=0.105 Sum_probs=129.1
Q ss_pred EEECCCCCEEEEE-eCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-
Q 002471 686 VRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK- 763 (918)
Q Consensus 686 l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~- 763 (918)
..|.++...|+-+ -..+.|.-|+..++.. ..+. +...+.++.....+..|+ ++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 3566666644444 4478888888875332 3333 333445555554445444 54 3556777776665533321
Q ss_pred -------cCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 764 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 764 -------~~~~~v~~sp~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
...+.+.+.+++...+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+....
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 12345777888666555433 134555565 45555555555566688999999997777666
Q ss_pred C--eEEEEECCC--CCCc--ceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcccCCCeEEEE
Q 002471 826 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA 897 (918)
Q Consensus 826 d--~I~iwdl~s--~~~~--~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~vwd~~~~~~~-~~~~h~~~V~~la 897 (918)
. .|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4 777777652 2111 12223333445666778888888776555554 99999999 6666 5555557888888
Q ss_pred Ee-CCCCEEEEEe
Q 002471 898 VS-TETGYVASAS 909 (918)
Q Consensus 898 ~s-pdg~~Lasgs 909 (918)
|- ++.+.|+..+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 84 4555544433
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0023 Score=71.10 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=114.5
Q ss_pred eEEEEeCCCCCceeEEecc-CCCCeeEEE---EcCC---CCeEEEEEeC----------CCcEEEEEcCCC-----eee-
Q 002471 703 TVRVWDADNPGYSLRTFMG-HSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCT- 759 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~---fsp~---~~~ll~sgs~----------Dg~I~iwdl~~~-----~~~- 759 (918)
.|+|.|..+ ...+..+.- ....|++++ |..+ ...+|+.|.. .|.|.++++... ++.
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 477777766 334433321 223344443 3322 1455555533 289999999984 222
Q ss_pred ---EEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCce-EEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 760 ---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 760 ---~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~-~~~~l~-~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
..+++.+.+++.. +++ ++++.++.|.+|++...+ ....-. .....+.++... +++|++|... .|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1234455555544 566 555566899999988777 333222 123356666655 6688888765 6666644
Q ss_pred CCCCC-cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--cEE--EEcccCCCeEEE---EE
Q 002471 834 GSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------N--KTM--TLTAHEGLIAAL---AV 898 (918)
Q Consensus 834 ~s~~~-~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~-------~--~~~--~~~~h~~~V~~l---a~ 898 (918)
+.... ...+. -......++++.|-.++..++++..+|.|.++.... + +.. ........|+++ ++
T Consensus 157 ~~~~~~l~~va-~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVA-RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEE-EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEE-ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 33211 12222 222355688888886667999999999999997753 2 222 223345667777 44
Q ss_pred eC--CCC------EEEEEecCCcEEE
Q 002471 899 ST--ETG------YVASASHDKFVKL 916 (918)
Q Consensus 899 sp--dg~------~Lasgs~Dg~I~I 916 (918)
.| .+. .++.++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 44 122 4778889998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=82.98 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=64.3
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.....|.|++++|+.+.|+.|+.||.|.+||...+.. .+....-..+.++|+|+|..|++|+..|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 5678999999999999999999999999999876532 3334456689999999999999999999999999975
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.054 Score=56.83 Aligned_cols=271 Identities=11% Similarity=0.035 Sum_probs=150.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
.+.+.++.|+.+ +...+..+.-++|+|+.+......+.. -.+.-.++.. .|++..++..|.-+.+.|+.++..+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 445677788754 788888888999999986544333221 1233444444 4889988887666889999886655
Q ss_pred eE--EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002471 716 LR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 716 ~~--~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 790 (918)
.. .+......-..++.+ |+ ..+.+..|+-+.+.|+.... .+..+..+......++.+++.++...+..+.+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvliv 238 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIV 238 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEE
Confidence 43 333334444567776 33 34466679999999997653 333343333334445555666666677778888
Q ss_pred ECCCceEEEEecC-CCCCeEEE-EEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002471 791 DAETQACRLSLQG-HTKPIDSV-CWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 867 (918)
Q Consensus 791 D~~t~~~~~~l~~-h~~~V~si-~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~ 867 (918)
|..+.+....+.. ....+.++ .|.-.+++......+ .+-+-|+.+.........+...+..-..+.. .+.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 8877664333322 11222222 222336666555555 6667777654332222222222222222222 12223333
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 868 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..+ ...+.|....+.. ...+....+.+++.+-+.+++.+...++.+.||+
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 222 3333444333322 2222223344555555666888888999999985
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00047 Score=78.09 Aligned_cols=228 Identities=15% Similarity=0.145 Sum_probs=116.6
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEe--cc------CCCCeEEEEECC-----CC-
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM- 692 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l--~~------h~~~V~~l~fsp-----dg- 692 (918)
.|.+...++...++|++|+.|.-| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998655 9999999999999999876665542 22 345688998863 33
Q ss_pred --CEEEEEeCCCeEEEEeCCC-C-CceeEEe----ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec
Q 002471 693 --PRLATSSFDKTVRVWDADN-P-GYSLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 764 (918)
Q Consensus 693 --~~Lasgs~Dg~V~Iwdl~~-~-~~~~~~~----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~ 764 (918)
-+|++|...|.+.+|.+.- . +.....+ ..+.+.|.. |..+|..+++.......
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~-------------------I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS-------------------IIPINADTGESALATIS 214 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E-------------------EEEEETTT--B-B-BHH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE-------------------EEEEECCCCCcccCchh
Confidence 3688888899999997751 1 1110000 012222222 23334443332111100
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEc-----CCCCEEEEEeCC-eEEEEECCCCCC
Q 002471 765 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----PSGELLASVSED-SVRVWTVGSGSE 838 (918)
Q Consensus 765 ~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s-----pdg~~Las~s~d-~I~iwdl~s~~~ 838 (918)
....+.--.....+++.+.+..++++...+.+..+........+..+++- ..+..|++...+ .|++|.+-.-
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-- 292 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-- 292 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--
Confidence 00000000011346677778999999998887776655332333445553 245567777777 9999999665
Q ss_pred cceEEEeccC----CCceEEEEEeCCCCEEEEEEcCC--eEEEEE
Q 002471 839 GECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQ--SLELWN 877 (918)
Q Consensus 839 ~~~i~~~~~~----~~~i~~i~~sp~g~~l~s~s~dg--~I~vwd 877 (918)
+.+..+... ...+..+.++++|..++..+... .+.+|.
T Consensus 293 -kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 293 -KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred -hHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 344433332 12345567788888776665543 344443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.2e-05 Score=90.86 Aligned_cols=196 Identities=18% Similarity=0.244 Sum_probs=132.3
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCeEEEEeCCCCCce-eEEeccCCCCeeEEEEcCCCCeEEEEEe----CCCcEEEEEc
Q 002471 681 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI 753 (918)
Q Consensus 681 ~~V~~l~fspdg--~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwdl 753 (918)
..+.|+++.-+. .++++|..+|.|.+-.++.+... .....++...+++++|.+-+..+||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346677765543 46788889999999988764433 4455678899999999987666775653 3677999999
Q ss_pred CCCee--e--EEe----ecCceEEEEecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcC-CCCEEEEE
Q 002471 754 NNGSC--T--RVF----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP-SGELLASV 823 (918)
Q Consensus 754 ~~~~~--~--~~~----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~sp-dg~~Las~ 823 (918)
.++-. . ..| ..+...++|..+.+.+++|.....+.++|++-. .....+ .+..+..+.++| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 87621 1 112 224557888877778888888899999999833 222111 334577788888 78899988
Q ss_pred eCCeEEEEE-CCCCCCcceEEEeccCC----CceEEEEEeCCCCE-EEEEEcC-CeEEEEECCC
Q 002471 824 SEDSVRVWT-VGSGSEGECVHELSCNG----NKFHSCVFHPTYPS-LLVIGCY-QSLELWNMSE 880 (918)
Q Consensus 824 s~d~I~iwd-l~s~~~~~~i~~~~~~~----~~i~~i~~sp~g~~-l~s~s~d-g~I~vwd~~~ 880 (918)
.++.|.+|| .+..+ ..+..+.... ..+..++|.|...- +++...| ++|++||+..
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 877999999 33322 1121121222 24888999996543 4444444 5899999853
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.071 Score=65.35 Aligned_cols=238 Identities=8% Similarity=-0.005 Sum_probs=123.7
Q ss_pred CCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEE
Q 002471 639 SKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVW 707 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~D-----g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iw 707 (918)
-.+..+.|||||++|+.+... ..|++.|+.+++.+...-.... ..++|.+|++.|+.+..+ ..|++|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 346778899999988876432 3688899988764332222222 459999999877665442 368888
Q ss_pred eCCCCC-ceeEEeccCCCCee-EEEEcCCCCeEEEEEeC--CCcEEEEEcC--CCeeeEEeec-CceEEEEecCCCEEEE
Q 002471 708 DADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVFKG-GTAQMRFQPHLGRYLA 780 (918)
Q Consensus 708 dl~~~~-~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~--Dg~I~iwdl~--~~~~~~~~~~-~~~~v~~sp~~~~ll~ 780 (918)
++.++. .....+........ .+..+.++..+++.+.. ++.+.+|+.. .+.....+.. ......+...++.++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~ 284 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYL 284 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEE
Confidence 888742 22333433333333 33334466766654433 4678999853 3332222221 1111222233345554
Q ss_pred EEcC----CeEEEEECCC-ceEEEEecCC-C-CCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEec-cCC
Q 002471 781 AAAE----NVVSILDAET-QACRLSLQGH-T-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNG 849 (918)
Q Consensus 781 ~~~d----g~I~i~D~~t-~~~~~~l~~h-~-~~V~si~~spdg~~Las~s~d---~I~iwdl~s~~~~~~i~~~~-~~~ 849 (918)
.+.. ..|...++.. ++. ..+..+ . ..|..+.+.. +.++++...+ .|++++...+ .+..+. ...
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~ 358 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDP 358 (686)
T ss_pred EEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCC
Confidence 4432 2444445542 222 223333 2 3678888873 3455555545 4666665432 222222 112
Q ss_pred CceEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCcEE
Q 002471 850 NKFHSCVFH--PTYP-SLLVIGCY---QSLELWNMSENKTM 884 (918)
Q Consensus 850 ~~i~~i~~s--p~g~-~l~s~s~d---g~I~vwd~~~~~~~ 884 (918)
..+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 223333344 3444 33333332 48899998877643
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.019 Score=66.27 Aligned_cols=217 Identities=13% Similarity=0.101 Sum_probs=120.5
Q ss_pred eEEEEECCCCCEEEEE-eCCC----eEEEEeCCCCCceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCC----------C
Q 002471 683 ITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD----------G 746 (918)
Q Consensus 683 V~~l~fspdg~~Lasg-s~Dg----~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~D----------g 746 (918)
+..++++||+++||.+ +..| .|+|+|++++ ..+. .+... ....+.|.+++..++++...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467899999998866 3333 5999999984 4333 32321 122399999988888776444 2
Q ss_pred cEEEEEcCCCeee--EEeec--C---ceEEEEecCCCEEEEEEc---C-CeEEEEECCCc-----eEEEEecCCCCCeEE
Q 002471 747 EIRYWSINNGSCT--RVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ-----ACRLSLQGHTKPIDS 810 (918)
Q Consensus 747 ~I~iwdl~~~~~~--~~~~~--~---~~~v~~sp~~~~ll~~~~---d-g~I~i~D~~t~-----~~~~~l~~h~~~V~s 810 (918)
.|++|++.+.... ..|.. . ...+..+.++.++++... + ..|++.|+..+ ...............
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888776422 33332 2 345778889888777554 2 46888898874 333333323333333
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC-CCc
Q 002471 811 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS-ENK 882 (918)
Q Consensus 811 i~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~-~~~ 882 (918)
+... .+.+++....+ .|...++...........+..+...+.-..+...+.+|++...++ .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 44444444443 566677776643222334444444333333444555666555443 79999999 555
Q ss_pred EEEEcc-cCCCeEEEEEeCCCC
Q 002471 883 TMTLTA-HEGLIAALAVSTETG 903 (918)
Q Consensus 883 ~~~~~~-h~~~V~~la~spdg~ 903 (918)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 334455555555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0089 Score=72.40 Aligned_cols=213 Identities=9% Similarity=0.111 Sum_probs=128.9
Q ss_pred CCEEEEE-eCCCeEEEEeCCCCCceeEEeccCCCC-eeEEEEcC-----CCCeEEEEEeCCCcEEEEEcCCCe--eeE--
Q 002471 692 MPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR-- 760 (918)
Q Consensus 692 g~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~-V~sl~fsp-----~~~~ll~sgs~Dg~I~iwdl~~~~--~~~-- 760 (918)
.++|+.. .....|+-.|++. ++.+..+..|... |..++-.. .....+ .|-.+..|+.||.|-.. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeecc
Confidence 3344443 3467899999998 7888888877654 55554321 122233 57779999999998643 332
Q ss_pred --Eeec--CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC--
Q 002471 761 --VFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-- 834 (918)
Q Consensus 761 --~~~~--~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~-- 834 (918)
.+.. ...|+ .....+++++|+.+|.|++||.........+.+-..+|.+|+.+.||++|++.+...+.|++..
T Consensus 571 ~k~Y~~~~~Fs~~-aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~ 649 (794)
T PF08553_consen 571 SKQYSSKNNFSCF-ATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIK 649 (794)
T ss_pred ccccccCCCceEE-EecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeee
Confidence 1111 22333 3445589999999999999995444444455677899999999999999999998877777752
Q ss_pred CCC---------------C--cceEEEec----------cCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCC---C
Q 002471 835 SGS---------------E--GECVHELS----------CNGNKFHSCVFHP---TYPSLLVIGCYQSLELWNMSE---N 881 (918)
Q Consensus 835 s~~---------------~--~~~i~~~~----------~~~~~i~~i~~sp---~g~~l~s~s~dg~I~vwd~~~---~ 881 (918)
.++ . .+.+..-. .....++...|+- .....++++....+.+|+++. +
T Consensus 650 ~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g 729 (794)
T PF08553_consen 650 DGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRG 729 (794)
T ss_pred cCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCC
Confidence 110 0 11111111 1112233445542 124466667778999999853 2
Q ss_pred --cEEEEcccCCCeEEEE--EeCCCCEEEE
Q 002471 882 --KTMTLTAHEGLIAALA--VSTETGYVAS 907 (918)
Q Consensus 882 --~~~~~~~h~~~V~~la--~spdg~~Las 907 (918)
.+..+......|.+-. |..+.++|++
T Consensus 730 ~~~~Y~ikry~~~V~~dnF~fg~d~~viva 759 (794)
T PF08553_consen 730 KKDPYQIKRYDENVVADNFKFGSDKNVIVA 759 (794)
T ss_pred CCCceEEEEcCCceEEccceeCCCCcEEEE
Confidence 2335555555665544 3445444444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.015 Score=66.67 Aligned_cols=187 Identities=8% Similarity=0.100 Sum_probs=98.3
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEE-E---Eec
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQM-R---FQP 773 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v-~---~sp 773 (918)
.|+||+.. +..+..+.-..+.|.++.|..+ ..|+ .-..||.+++||+.... ...+.. .+... . +..
T Consensus 62 ~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC--CCEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 47788776 3444444333378999999876 4455 55579999999987433 111111 11111 1 112
Q ss_pred CCCEEEEEEcCCeEEEEECCCce-EEEEe---cCCC-----C-CeE-EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 002471 774 HLGRYLAAAAENVVSILDAETQA-CRLSL---QGHT-----K-PID-SVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~-~~~~l---~~h~-----~-~V~-si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~ 841 (918)
..+ +++...++.|++..-.... ....+ .... . .+. ...++.+....+....+ .+.+.+-....
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---- 211 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---- 211 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc----
Confidence 233 3444455555555333221 11111 1100 0 010 12344444444444444 55544432210
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-ccCCCeEEEEEeCCC
Q 002471 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AHEGLIAALAVSTET 902 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~-~h~~~V~~la~spdg 902 (918)
.+. ..+++..+++||++++|+.-..+|.+.|....-.+.+ .+. .-......+.|.-+.
T Consensus 212 --~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 212 --QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred --ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 011 2468999999999999999999999998876655544 222 223455566665544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00023 Score=80.89 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=81.9
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.+.-.-.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++..|...|+ +++|.|||+.||+|-.||+|++.|++++
T Consensus 16 ~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 16 VMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred hhccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 33445578889999999999999999999999988 788899988888888 9999999999999999999999999985
Q ss_pred CceeEEeccCCCCeeEEEEcC
Q 002471 713 GYSLRTFMGHSASVMSLDFHP 733 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp 733 (918)
.............|.++.|.+
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred Cceeccccccccchheeeccc
Confidence 544443334556677777763
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.068 Score=63.40 Aligned_cols=146 Identities=11% Similarity=0.057 Sum_probs=85.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCC-eEEEEECC---CCCEEEEEe------CCCeEEEEeCCCCCceeEEec
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSP---SMPRLATSS------FDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~-V~~l~fsp---dg~~Lasgs------~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
..|+.++.|+.|.-+|.++++.+......... -..+.-+| ++ .|+++. .+|.|+.+|.+++ +.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG-~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTG-KLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCC-ceeEecc
Confidence 46777888999999999999988776531110 00111112 34 455543 2688999999884 3332221
Q ss_pred c-C------------------------------CCCee-EEEEcCCCCeEEEEEeC----CC-----------cEEEEEc
Q 002471 721 G-H------------------------------SASVM-SLDFHPNKDDLICSCDG----DG-----------EIRYWSI 753 (918)
Q Consensus 721 ~-h------------------------------~~~V~-sl~fsp~~~~ll~sgs~----Dg-----------~I~iwdl 753 (918)
. . ...|+ .+.+.+..+.+++..+. ++ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 1 0 11122 24566654444332222 12 6888899
Q ss_pred CCCeeeEEeecC----------c--eEEEEecCCC---EEEEEEcCCeEEEEECCCceEE
Q 002471 754 NNGSCTRVFKGG----------T--AQMRFQPHLG---RYLAAAAENVVSILDAETQACR 798 (918)
Q Consensus 754 ~~~~~~~~~~~~----------~--~~v~~sp~~~---~ll~~~~dg~I~i~D~~t~~~~ 798 (918)
++++.+..|... . .-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999988776531 1 1122324554 4556777999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.015 Score=64.33 Aligned_cols=240 Identities=13% Similarity=0.118 Sum_probs=116.7
Q ss_pred ECCCCceeeEeccCCCCeEEE-----EECCCCCEEEEEeC-CCe--EEEEeCCCCCceeEEeccCC-CCeeEEEEcCCCC
Q 002471 666 HTDTLKSKTNLEEHSSLITDV-----RFSPSMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD 736 (918)
Q Consensus 666 d~~~~~~~~~l~~h~~~V~~l-----~fspdg~~Lasgs~-Dg~--V~Iwdl~~~~~~~~~~~~h~-~~V~sl~fsp~~~ 736 (918)
|..+|..+..+..+......+ +|..||+.|+.++. ||. +.+.|+.+ ..+..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC
Confidence 556777777776444333322 56778887766655 554 55556665 4455555443 3233567788877
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEeec--Cce-EEEEe-cCCCEEEEEEc-----------------------CCeEEE
Q 002471 737 DLICSCDGDGEIRYWSINNGSCTRVFKG--GTA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI 789 (918)
Q Consensus 737 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~-~v~~s-p~~~~ll~~~~-----------------------dg~I~i 789 (918)
.+++.. .+..|+..|+++.+....+.. .-. ...|. ..+...+++.. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 766543 456889999999876555432 222 23443 22333344332 235667
Q ss_pred EECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC---e--EEEEECCCCCC-cceEEEeccCCCceEEEEEeCCCC
Q 002471 790 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED---S--VRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 790 ~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d---~--I~iwdl~s~~~-~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
.|+.+++....+. ....+..+-|+|... +|+-|-++ . -|||-+++... ..+++.-. ....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCC
Confidence 7888887655554 457788999999665 55556554 3 37887765322 22222211 122333445899998
Q ss_pred EEEEEEc-----CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 863 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 863 ~l~s~s~-----dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
.|+.-+. +..|.-+|..+++...+..-. ....+-.++||+++|-=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 8776443 336777888887655332222 34455667898887654444
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.026 Score=62.69 Aligned_cols=211 Identities=12% Similarity=0.145 Sum_probs=123.1
Q ss_pred cEEEEECCCCceeeEecc-CCCCeEEE---EECCC----CCEEEEEeC----------CCeEEEEeCCCC---CceeE--
Q 002471 661 KAVLWHTDTLKSKTNLEE-HSSLITDV---RFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLR-- 717 (918)
Q Consensus 661 ~V~iwd~~~~~~~~~l~~-h~~~V~~l---~fspd----g~~Lasgs~----------Dg~V~Iwdl~~~---~~~~~-- 717 (918)
.|+|.|..+.+.+.++.- ....|+++ .|..+ ..+|++|.. .|.|.++++... ...+.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 588888888777766552 22334443 44432 457777743 289999999873 11222
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEE--eecCceEEEEecCCCEEEEEEcCCeEEEE--EC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--DA 792 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~--~~~~~~~v~~sp~~~~ll~~~~dg~I~i~--D~ 792 (918)
.-....++|++|+-. +++++++. .+.|++|++...+ .... +......+.....+++++++.....|.++ +.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 223467889999877 34555433 5899999998887 4433 33444556666667899999888877776 44
Q ss_pred CCceEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-----C---CcceEEEeccCCCceEEE---EEeC
Q 002471 793 ETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFHP 859 (918)
Q Consensus 793 ~t~~~~~~l-~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-----~---~~~~i~~~~~~~~~i~~i---~~sp 859 (918)
...+....- ......++++.|-.+++.++++..+ .|.++..... . ....+..+.. +..|+++ .+.+
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEEEEEeee
Confidence 333222221 2245568899998666777777777 8888877531 1 1122233332 4456666 3344
Q ss_pred --CCC------EEEEEEcCCeEEEE
Q 002471 860 --TYP------SLLVIGCYQSLELW 876 (918)
Q Consensus 860 --~g~------~l~s~s~dg~I~vw 876 (918)
.+. .++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 122 38888888887733
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.011 Score=70.45 Aligned_cols=210 Identities=14% Similarity=0.153 Sum_probs=114.1
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEe------CCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 659 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 659 Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs------~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
+|.+.-.+-.....+.-..+....+...+++|+|+.++..- .|..-.||-...++.......+ ...+.-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceEC
Confidence 55555443222222222223344688999999999887765 2444444433322333222333 237888999
Q ss_pred CCCCeEEEEEe-----------CCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEE---EECCCceEE
Q 002471 733 PNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQACR 798 (918)
Q Consensus 733 p~~~~ll~sgs-----------~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i---~D~~t~~~~ 798 (918)
|+|+.+.+... ..+.|.+.+++.++....+.+.+..+.|++++.+++... ++.|++ .....+...
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee
Confidence 99775554322 224455556665554445567789999999999988876 477777 444445411
Q ss_pred E----Eec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 799 L----SLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 799 ~----~l~-~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
. .+. +-...+.++.|..++.+++..... .+...++.... .....-......+..++-.+ ..|++...++
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g 560 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASP--STVYVTDARA 560 (591)
T ss_pred ecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCC--ceEEEEcCCc
Confidence 1 122 233346889999999866443322 34444443221 11101111134455566554 2466666665
Q ss_pred eEEE
Q 002471 872 SLEL 875 (918)
Q Consensus 872 ~I~v 875 (918)
.+.+
T Consensus 561 ~~~l 564 (591)
T PRK13616 561 VLQL 564 (591)
T ss_pred eEEe
Confidence 4443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.17 Score=57.57 Aligned_cols=260 Identities=14% Similarity=0.138 Sum_probs=145.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEEEECC----CCCEEEEEeCCCeEEEEeCCCCC--------
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSP----SMPRLATSSFDKTVRVWDADNPG-------- 713 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~----~~~l~~h~~~V~~l~fsp----dg~~Lasgs~Dg~V~Iwdl~~~~-------- 713 (918)
...|++|+.+|.++||+...... +..-..-..+|..|..-. .....++.-.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 36899999999999999753321 111112456777776532 22233333556778888873211
Q ss_pred ceeEEeccCC--CCeeEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEcCC
Q 002471 714 YSLRTFMGHS--ASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 714 ~~~~~~~~h~--~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg 785 (918)
..+.....|. .....+++-|- +..+|+.-+.||.+.+|+-+.....+.+.. -...+.|.+....|++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 1223333333 23334444332 357888999999999999876655555543 235688999999999999998
Q ss_pred eEEEEECCC--------------------ce---EEEEecCCCCCe---EEEEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 002471 786 VVSILDAET--------------------QA---CRLSLQGHTKPI---DSVCWDPSGELLASVSEDSVRVWTVGSGSEG 839 (918)
Q Consensus 786 ~I~i~D~~t--------------------~~---~~~~l~~h~~~V---~si~~spdg~~Las~s~d~I~iwdl~s~~~~ 839 (918)
.|..|.... ++ .-+++. -...+ ..+.++.....+++-++.++.+.+-. | ..
T Consensus 197 ~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~l 273 (418)
T PF14727_consen 197 TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-SL 273 (418)
T ss_pred eEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-eE
Confidence 888885321 00 111111 11222 33333334446666666666666653 2 33
Q ss_pred ceEEEeccCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEE---EEeCCCCEEEEEe
Q 002471 840 ECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL---AVSTETGYVASAS 909 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i~~sp----~g---~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~l---a~spdg~~Lasgs 909 (918)
+..+.+.. .+...+.|.. ++ ..+++++.++.+.||.=.+-... ........+| .|..-...|++-+
T Consensus 274 ~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~Ws--A~l~~~PVal~v~~~~~~~G~IV~Ls 349 (418)
T PF14727_consen 274 RFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWS--AQLPHVPVALSVANFNGLKGLIVSLS 349 (418)
T ss_pred EEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEe--cCCCCCCEEEEecccCCCCceEEEEc
Confidence 33344432 2222222221 22 24889999999999863332211 1112222233 2333345788888
Q ss_pred cCCcEEE
Q 002471 910 HDKFVKL 916 (918)
Q Consensus 910 ~Dg~I~I 916 (918)
.||.|.+
T Consensus 350 ~~G~L~v 356 (418)
T PF14727_consen 350 DEGQLSV 356 (418)
T ss_pred CCCcEEE
Confidence 8888865
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0029 Score=70.71 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=91.2
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEECCCCCCcceEEEecc----C
Q 002471 781 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECVHELSC----N 848 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~--------~Las~s~d~I~iwdl~s~~~~~~i~~~~~----~ 848 (918)
+.....|+-.|++.|+.+.+..-+.. |.-+.+.|+.+ .|+..+...|.-||.+-.... .+..... .
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQSKQYST 429 (644)
T ss_pred CCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeecccccc
Confidence 33456889999999999999887766 77778888654 344444458999999854331 2221111 2
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
...+.|++...+| +|++|+.+|.|++||-...... .+.+-..+|..|..+.+|++|+..+..
T Consensus 430 k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 430 KNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred ccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 3456666666555 6999999999999998333222 678889999999999999998776643
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.032 Score=58.24 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=126.3
Q ss_pred EEEEccCC-CEEEEEeCCCc-EEEEECCCCceeeEe--------ccCCCCeEEEEECCCCCEEEEEeC-----CCeEEEE
Q 002471 643 CCHFSSDG-KLLATGGHDKK-AVLWHTDTLKSKTNL--------EEHSSLITDVRFSPSMPRLATSSF-----DKTVRVW 707 (918)
Q Consensus 643 ~l~fspdg-~~Latgs~Dg~-V~iwd~~~~~~~~~l--------~~h~~~V~~l~fspdg~~Lasgs~-----Dg~V~Iw 707 (918)
.|+|+|.- .-++.+-.-|+ ..+||........++ .+|. .|++||.+|+..-. -|.|-||
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 46677743 45555555555 467887766554443 3444 69999999988744 3789999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC-----------------CCcEEEEEcCCCeeeEEeec------
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----------------DGEIRYWSINNGSCTRVFKG------ 764 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-----------------Dg~I~iwdl~~~~~~~~~~~------ 764 (918)
|.+..-..+..+..|.-.-..+.|.+||..++++.+. .-.+.+.|..++.++.+..-
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 9997666677888888788889999999877655330 11233344444444433221
Q ss_pred -CceEEEEecCCCEEEEEEcCC-----eEEEEECCCceEEEEec-------CCCCCeEEEEEcCCCCEEEEEeCC--eEE
Q 002471 765 -GTAQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED--SVR 829 (918)
Q Consensus 765 -~~~~v~~sp~~~~ll~~~~dg-----~I~i~D~~t~~~~~~l~-------~h~~~V~si~~spdg~~Las~s~d--~I~ 829 (918)
.+..+...+++..++.+-..| --.+=-...++.+.-+. .....|-+|+.+.+..+++..+-. ...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 233344444443333332221 01111111222222221 112357778888766666655544 889
Q ss_pred EEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002471 830 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 877 (918)
Q Consensus 830 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd 877 (918)
+||..++. .+.. ..-..++-.-+...-|++.+.+|.|.++.
T Consensus 306 i~da~tG~---vv~~----a~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 306 IWDAATGA---VVSE----AALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEcCCCc---EEec----ccccccccceeccCceEEecCCceEEecc
Confidence 99999883 2221 11112222334455578888888888874
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0081 Score=69.53 Aligned_cols=152 Identities=9% Similarity=0.091 Sum_probs=102.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 679 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
|...|.--++...+++|+.|+.-|.|++|+-..+........+..+.+..++.+++ ++++|+|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 34455555667788999999999999999988644444444444555566666666 66888899999999998876421
Q ss_pred ---------eEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCc----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 759 ---------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 759 ---------~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~----~~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
-...+..+++++|++++..+++|...|.|.+..+.+. .....+......|.-+.+.. +.+|++...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl~ 189 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTLT 189 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhhh
Confidence 1112446789999999999999999999999887772 11222333456676666652 444444433
Q ss_pred CeEEEEEC
Q 002471 826 DSVRVWTV 833 (918)
Q Consensus 826 d~I~iwdl 833 (918)
. ..++++
T Consensus 190 r-~~Lc~t 196 (726)
T KOG3621|consen 190 R-CILCQT 196 (726)
T ss_pred h-hheeec
Confidence 3 334444
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.17 Score=62.15 Aligned_cols=198 Identities=11% Similarity=-0.009 Sum_probs=103.0
Q ss_pred CCeEEEEECCCCCEEEEEeC-C----CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC-----CcEEE
Q 002471 681 SLITDVRFSPSMPRLATSSF-D----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 750 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~-D----g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-----g~I~i 750 (918)
-.+..+.|+||+++|+.+.. + -.|++.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34777899999999887743 2 358888998743222222221 14599999988888776543 36888
Q ss_pred EEcCCC--eeeEEeec--C-ce-EEEEecCCCEEEEEEc---CCeEEEEECC--CceEEEEecCCCCCeEEEEEcCCCCE
Q 002471 751 WSINNG--SCTRVFKG--G-TA-QMRFQPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL 819 (918)
Q Consensus 751 wdl~~~--~~~~~~~~--~-~~-~v~~sp~~~~ll~~~~---dg~I~i~D~~--t~~~~~~l~~h~~~V~si~~spdg~~ 819 (918)
+++.++ +....+.. . .. .+..+.++..++..+. ++.+.+++.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 898887 33334432 1 12 1223336666665444 4578888843 3332222221222222222 333333
Q ss_pred EEEEeCC--e--EEEEECCCCCCcceEEEeccC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEE
Q 002471 820 LASVSED--S--VRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL 886 (918)
Q Consensus 820 Las~s~d--~--I~iwdl~s~~~~~~i~~~~~~--~~~i~~i~~sp~g~~l~s~s~dg--~I~vwd~~~~~~~~~ 886 (918)
++....+ . |...++...... ..+..+ ...+..+.+. .+..+++...++ .|++++..+++...+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~---~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQW---EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccC---eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 3333322 3 444444421111 222222 2357777776 233344444455 456667655444443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.052 Score=55.10 Aligned_cols=205 Identities=10% Similarity=0.082 Sum_probs=109.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc-CCCC-eEEEEEeCCCcEEEEEcC--CCeeeEEee-----
Q 002471 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKD-DLICSCDGDGEIRYWSIN--NGSCTRVFK----- 763 (918)
Q Consensus 693 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs-p~~~-~ll~sgs~Dg~I~iwdl~--~~~~~~~~~----- 763 (918)
.++.+--..|.|.-||+.........+.+.. +.++.+- .++. .+.+.|+..-.|.-||.. ..+..+++.
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444566677788886333233333322 2222221 1222 344455555556667733 223333321
Q ss_pred ---cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC--------CCeEEEEEcCCCCEEEE-EeCC-eEEE
Q 002471 764 ---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLAS-VSED-SVRV 830 (918)
Q Consensus 764 ---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~--------~~V~si~~spdg~~Las-~s~d-~I~i 830 (918)
.....-..+|++.+ +.+.....-.++....+.....+.+|. .--+.++|+.+.+.+.. -+.+ +|.-
T Consensus 106 ~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 12233456787776 444331111122222333333333332 22356889988885554 4555 8877
Q ss_pred EE--CCCCCC--cceEEEeccC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC
Q 002471 831 WT--VGSGSE--GECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 900 (918)
Q Consensus 831 wd--l~s~~~--~~~i~~~~~~----~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~sp 900 (918)
|| ..++.. .+.+..++.. .-.--.++...+|..++++-..++|..+|..+|+++ ++.-....|+|+||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 88 555532 2333333321 111223445667887888888889999999999988 6666788999999953
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.063 Score=61.44 Aligned_cols=121 Identities=10% Similarity=0.069 Sum_probs=83.7
Q ss_pred cCCCCeEEEEEccC----CCEEEEEeCCCcEEEEECC-----CCceeeEecc-C--CC--CeEEEEECCCCCEEEEEeCC
Q 002471 636 ASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTD-----TLKSKTNLEE-H--SS--LITDVRFSPSMPRLATSSFD 701 (918)
Q Consensus 636 ~H~~~V~~l~fspd----g~~Latgs~Dg~V~iwd~~-----~~~~~~~l~~-h--~~--~V~~l~fspdg~~Lasgs~D 701 (918)
|....|..+.|.|- ...|++.-..+.|.||-+. ..+.+..-.. . .- --..+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 34456899999984 3345555678899999865 2222222111 1 11 12356899999888877766
Q ss_pred CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002471 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 756 (918)
..-.++++......++.-....+.|.|.||..||.+++++.+..=.-++||-...
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 6556778776566665555677889999999999999988887778899996543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.046 Score=59.88 Aligned_cols=185 Identities=16% Similarity=0.056 Sum_probs=115.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-----CCCCeEEEEECCCCCEEEEEeC-----C----Ce
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF-----D----KT 703 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-----h~~~V~~l~fspdg~~Lasgs~-----D----g~ 703 (918)
.+.+.++..-.++..|+++. ..+++++.+++..+..+.. -....+++...|+|.+.++... . ..
T Consensus 65 p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 65 PGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence 33445555555555666653 4567777766655333321 1245678888999987776544 1 11
Q ss_pred EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC--C----eeeEEe----ecCceEEEEec
Q 002471 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--G----SCTRVF----KGGTAQMRFQP 773 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~--~----~~~~~~----~~~~~~v~~sp 773 (918)
-+||-++..+..++.+..+-..-+.|+|+||++.++++=+..+.|..|++.. + +....+ .+..-.++...
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 2455555335666666666666778999999988887777778999998763 1 111111 12334466677
Q ss_pred CCCEEEEEEcCC-eEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeC
Q 002471 774 HLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSE 825 (918)
Q Consensus 774 ~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~ 825 (918)
++...+++...| .|.+|+.. ++.+..+.-....+++++|-- +.+.|++.+.
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 766665554544 99999998 888888887767788888853 4454444433
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.14 Score=58.23 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=58.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEE---EECC-CC----ceeeEecc---CC--CCeEEEEECC-----------CCCEEEEE
Q 002471 643 CCHFSSDGKLLATGGHDKKAVL---WHTD-TL----KSKTNLEE---HS--SLITDVRFSP-----------SMPRLATS 698 (918)
Q Consensus 643 ~l~fspdg~~Latgs~Dg~V~i---wd~~-~~----~~~~~l~~---h~--~~V~~l~fsp-----------dg~~Lasg 698 (918)
+++.+|++++||.+..+..|.+ |+.. .+ .......+ +. ..|+++.|-| |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678999999999988877665 6432 11 11222111 11 4677776643 45689999
Q ss_pred eCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
..+|.|++|... +..+..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence 999999999885 44444444577888877764
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.32 Score=58.91 Aligned_cols=270 Identities=15% Similarity=0.139 Sum_probs=152.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~--~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
..|.-..|--|..+|.++..||.+.-|-++ ++..-..- .-...++.--.|+..++.-+.++.|.-..+|..+. +.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence 456666676778899999999998766544 44332222 22345666667777666555555677677776553 22
Q ss_pred eeEEeccCCCCeeEEE-EcCC-CCeEEEEEeCCCcEEEEEcCCCee--eEEe--ecCceEEEEecCCCEEEEEEc-----
Q 002471 715 SLRTFMGHSASVMSLD-FHPN-KDDLICSCDGDGEIRYWSINNGSC--TRVF--KGGTAQMRFQPHLGRYLAAAA----- 783 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~-fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~--~~~~~~v~~sp~~~~ll~~~~----- 783 (918)
+...+. . ..+..+| |+.+ ....++++. .+.+++.-+..-.. +++. ......+++.+..-.+.+.+.
T Consensus 663 v~spls-~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLS-L-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccc-h-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 222111 1 1111121 2211 222343443 56677776654322 2222 233445555553333333221
Q ss_pred ------C---CeEEEEECCCceEEEEecCCC----CCeEEEEEcCC-CCEEEEEeC-----------CeEEEEECCCCCC
Q 002471 784 ------E---NVVSILDAETQACRLSLQGHT----KPIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGSE 838 (918)
Q Consensus 784 ------d---g~I~i~D~~t~~~~~~l~~h~----~~V~si~~spd-g~~Las~s~-----------d~I~iwdl~s~~~ 838 (918)
+ ..++++|-.+.+.+...+-.. ..|.++.|..| +.++++|.. +.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 146777877776655433211 23555568877 557777651 2577787776555
Q ss_pred cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 839 ~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
.+.+.+....+....-+.| +|++++ +-...|++|++.+++.+ .-..|...+..+...-.+..|+.|..=++|.+
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 5566655543333322333 454443 44568999999999666 45578888999999888999998876666544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0053 Score=74.27 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=91.6
Q ss_pred CCeEEEEECCCceEEEEecCCCCC-eEEEEEcC------CCCEEEEEeCCeEEEEECCCCCCcceEE-Ee--ccCCCceE
Q 002471 784 ENVVSILDAETQACRLSLQGHTKP-IDSVCWDP------SGELLASVSEDSVRVWTVGSGSEGECVH-EL--SCNGNKFH 853 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~h~~~-V~si~~sp------dg~~Las~s~d~I~iwdl~s~~~~~~i~-~~--~~~~~~i~ 853 (918)
.+.|+-.|++.|+.+..+..+... |..++-.. ....|+..+.+.+..||.|-.. .+++. .. -.....+.
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-CceeeccccccccCCCce
Confidence 578999999999999999887654 55554321 2234555555599999998653 22221 11 12345677
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|++.+.+| +||+|+.+|.|++||-...+.. .+.+-..+|.+|+.+.||+||++.|.. .|.|+
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi 644 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLI 644 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEE
Confidence 77777666 6999999999999995433322 566778999999999999998877644 44443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.12 Score=57.76 Aligned_cols=219 Identities=12% Similarity=0.115 Sum_probs=106.3
Q ss_pred CCCEEEEEe-CCCcEEEEECCC----CceeeEecc---CC----CCeEEEEECCCCCEEEEEeC------CCeEEEEeCC
Q 002471 649 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSSF------DKTVRVWDAD 710 (918)
Q Consensus 649 dg~~Latgs-~Dg~V~iwd~~~----~~~~~~l~~---h~----~~V~~l~fspdg~~Lasgs~------Dg~V~Iwdl~ 710 (918)
+.++|+..+ ..+.|+|+|+.+ -+..++++. +. ..-..+..-|+|++++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456787777 678999999873 344444442 11 12223334468888888632 2457777777
Q ss_pred CCCceeEEeccC---CCCeeEEEEcCCCCeEEEEEe--------------------CCCcEEEEEcCCCeeeEEeecC--
Q 002471 711 NPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCD--------------------GDGEIRYWSINNGSCTRVFKGG-- 765 (918)
Q Consensus 711 ~~~~~~~~~~~h---~~~V~sl~fsp~~~~ll~sgs--------------------~Dg~I~iwdl~~~~~~~~~~~~-- 765 (918)
+ .......... ...-+.+-|.|..+.+| |.. ...++.+||+.+.+.+.++..+
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 3344444322 23456677888755444 542 2467999999999999988754
Q ss_pred ---ceEEEEe--cCCCEEEEEEc-CCeEEEE-ECCCce----EEEEecCC-----------------CCCeEEEEEcCCC
Q 002471 766 ---TAQMRFQ--PHLGRYLAAAA-ENVVSIL-DAETQA----CRLSLQGH-----------------TKPIDSVCWDPSG 817 (918)
Q Consensus 766 ---~~~v~~s--p~~~~ll~~~~-dg~I~i~-D~~t~~----~~~~l~~h-----------------~~~V~si~~spdg 817 (918)
...++|. |+..+-++++. ...|..| ..+.++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2345554 44455444443 5555554 334432 22232211 2347899999999
Q ss_pred CEEEEEeCC--eEEEEECCCCCCcceEEEeccCC----------------CceEEEEEeCCCCEEEEEEc
Q 002471 818 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC 869 (918)
Q Consensus 818 ~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~----------------~~i~~i~~sp~g~~l~s~s~ 869 (918)
++|...+-. .|+.||+......+.+..+...+ +....+..|-||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 988887765 89999999877766665543221 12356778899999888763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.2 Score=52.94 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=115.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCC--eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 681 SLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~Dg--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
...-.+.|..++.++-+.+.-| .|+.+|+.++.............--.|+.. ++.++.-.-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3455677867787777777655 799999998433223322233333445555 345666677899999999999988
Q ss_pred eEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCC--C---CCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002471 759 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGELLASVSED-SVRVWT 832 (918)
Q Consensus 759 ~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h--~---~~V~si~~spdg~~Las~s~d-~I~iwd 832 (918)
+..+.-....--...++..++.+.....|+++|..+.+....+... . ..++-+.|. +|.+.|=.-.. .|...|
T Consensus 123 ~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 123 IGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 8887643333223367788999888999999999988776665432 1 245667776 56665555544 888889
Q ss_pred CCCCCCcceEEEec---------------cCCCceEEEEEeCCCCEEEEEEcC
Q 002471 833 VGSGSEGECVHELS---------------CNGNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 833 l~s~~~~~~i~~~~---------------~~~~~i~~i~~sp~g~~l~s~s~d 870 (918)
..+|. ++..+. ....-.+.|+++|....|++.|..
T Consensus 202 p~tG~---V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 202 PETGK---VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTT-B---EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCCCe---EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 88873 333221 013457899999988888777753
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.23 Score=55.46 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=41.0
Q ss_pred CceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002471 850 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVK 915 (918)
Q Consensus 850 ~~i~~i~~sp-------~g~~l~s~s~dg~I~vwd~~~~~~~----~~~-~h~~~V~~la~spdg~~Lasgs~Dg~I~ 915 (918)
..+..+.|.. .+.+|++.-..+.|...++..+..+ .+. .....+..|++.|||.+.++-+.+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3455566653 3344555555568888888755333 222 3445899999999999888888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=46.51 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.4
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd 666 (918)
+....+..|...|.+++|.+++.++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.062 Score=64.29 Aligned_cols=186 Identities=11% Similarity=0.062 Sum_probs=105.7
Q ss_pred CCCCeeEEEEcCCCCeEEEEEe-----CCC--cEEEEEcCCCeeeEEee-cCceEEEEecCCCEEEEEEcC---------
Q 002471 722 HSASVMSLDFHPNKDDLICSCD-----GDG--EIRYWSINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE--------- 784 (918)
Q Consensus 722 h~~~V~sl~fsp~~~~ll~sgs-----~Dg--~I~iwdl~~~~~~~~~~-~~~~~v~~sp~~~~ll~~~~d--------- 784 (918)
....+.+.+++|++..++++.. .|. .|.+++.... ...... .....-.|+|+++.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3346788999999998877662 233 5555565322 222222 235667899998877766533
Q ss_pred ---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE---EECCCCCCcce--EEEecc-CCCceEEE
Q 002471 785 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV---WTVGSGSEGEC--VHELSC-NGNKFHSC 855 (918)
Q Consensus 785 ---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~i---wdl~s~~~~~~--i~~~~~-~~~~i~~i 855 (918)
+.+.+.+++.++... .....|..+.|+|||..|+....+.|+| -....+. ..+ ...+.. ....+..+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 233333444333222 2345799999999999888777666666 3333332 111 112222 23335788
Q ss_pred EEeCCCCEEEEEEcCC--eEEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002471 856 VFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASHDKFVK 915 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg--~I~vwd~~~~~~~~~~~--h~~~V~~la~spdg~~Lasgs~Dg~I~ 915 (918)
.|..++.. +++..++ .|+..++.......+.. ....|.+|+-+++ .|+....+|.+.
T Consensus 503 ~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 503 DWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred eEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 99999984 4555544 34444555433222222 2566777777763 455556666443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.036 Score=66.36 Aligned_cols=216 Identities=8% Similarity=0.040 Sum_probs=107.3
Q ss_pred cEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCCCCCceeEEeccCCCC--eeEEE
Q 002471 661 KAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSAS--VMSLD 730 (918)
Q Consensus 661 ~V~iwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwdl~~~~~~~~~~~~h~~~--V~sl~ 730 (918)
.+..||..+.+- +..+...... .+++. -++.++++|+.+ ..|..||..+... ..+..-..+ -.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhceeEE
Confidence 567788765432 2222211111 12222 256677777754 3477888876321 111111111 11222
Q ss_pred EcCCCCeEEEEEeCCC-----cEEEEEcCCCeeeE--EeecCceEE-EEecCCCEEEEEEcC------------------
Q 002471 731 FHPNKDDLICSCDGDG-----EIRYWSINNGSCTR--VFKGGTAQM-RFQPHLGRYLAAAAE------------------ 784 (918)
Q Consensus 731 fsp~~~~ll~sgs~Dg-----~I~iwdl~~~~~~~--~~~~~~~~v-~~sp~~~~ll~~~~d------------------ 784 (918)
.. ++.+.+.|+.++ .|.+||..+.+... .+....... ....++..+++|+.+
T Consensus 349 ~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 22 355767777654 48889988765332 222111111 122344555555543
Q ss_pred -----CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEEECCCCCCcceEEEeccCCCce
Q 002471 785 -----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 785 -----g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-------~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
..|..||.++.+-...-.-...........-++++.+.|+.+ .|..||..+......+..+.......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 247788887764332111111111111122346766666532 36788887622344444443322222
Q ss_pred EEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE
Q 002471 853 HSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM 884 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg--~I~vwd~~~~~~~ 884 (918)
..+++ +++..++||.++ .+..||..+.+..
T Consensus 507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 22233 677788888887 7888998888765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.021 Score=51.80 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=67.6
Q ss_pred eEEEEEcc---CC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 641 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 641 V~~l~fsp---dg-~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
|+++++.. || +.|++|+.|..||||+-+ +.+..+.. .+.|++++-... ..++.+..+|+|-+|+-.. . +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--R-l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--R-L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--e-e
Confidence 56666654 43 689999999999999844 56666664 445777776655 6799999999999997643 2 2
Q ss_pred EEeccCCCCeeEEEEcC---CCCeEEEEEeCCCcEE
Q 002471 717 RTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIR 749 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~ 749 (918)
...+ -...++++.+.. +|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 223366666543 3444555888788774
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.041 Score=65.74 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=119.3
Q ss_pred cCCCEEEEEeCC------CcEEEEECCCCcee--eEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCCCCC
Q 002471 648 SDGKLLATGGHD------KKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPG 713 (918)
Q Consensus 648 pdg~~Latgs~D------g~V~iwd~~~~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwdl~~~~ 713 (918)
..+.+++.||.+ .+|..||..+..-. ..+. ....-.++++. ++.+.++|+.| .++..||.....
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 345567777766 36778887765322 2222 22223344444 45778888888 357788887633
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc-----EEEEEcCCCeeeEE--eecCceEEEE-ecCCCEEEEEEcC-
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-----IRYWSINNGSCTRV--FKGGTAQMRF-QPHLGRYLAAAAE- 784 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~-----I~iwdl~~~~~~~~--~~~~~~~v~~-sp~~~~ll~~~~d- 784 (918)
. ..+..-...-..+....-++.+.+.|+.||. |..||.++.+.... .......... .-++..+++|+.+
T Consensus 361 W--~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 W--TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred e--eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 1 1111111111112222224667788888864 77788777653322 2222222333 3344445555543
Q ss_pred -----CeEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeccCCCc
Q 002471 785 -----NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 785 -----g~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
..|..||..+.+.... +..-..... ++.. ++.+.+.|+.+ +|..||..+.. ...+..+......
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCc-eeEcccCcccccc
Confidence 3678899887754332 221122222 3332 46666666644 47888887642 2222222222222
Q ss_pred eEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE
Q 002471 852 FHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM 884 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg-----~I~vwd~~~~~~~ 884 (918)
+.. ..-++...++|+.|+ +|..||..+++..
T Consensus 516 ~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 516 VGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred ccE--EEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 222 223566677777775 7888888777655
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0018 Score=45.35 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.5
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
++.+..+..|...|.++.|.+++..+++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.19 Score=53.19 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=119.6
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
+.+-+..|.++.|+|+.+.|++......-.||=...|..+.++.- .-..-..|.|..++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455566699999999999999988888888887778888888752 1233456778878877777777999999888764
Q ss_pred CceeE---------EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-ee------------EEeecCceEEE
Q 002471 713 GYSLR---------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT------------RVFKGGTAQMR 770 (918)
Q Consensus 713 ~~~~~---------~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~------------~~~~~~~~~v~ 770 (918)
...+. ...........++|.|.+..++ .+-+..-+.||.+.... .+ ..+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 33221 1111255677899999988777 45556667777665432 11 11223455677
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCceEEEEecCCC---------CCeEEEEEcCCCCEEEEE
Q 002471 771 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASV 823 (918)
Q Consensus 771 ~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~si~~spdg~~Las~ 823 (918)
|.+..+.+++-+. ++.|.-.|.... .+..+.-+. .....|+.+++|.+.+++
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 8777777666655 455555565433 233222111 123467777777644443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.46 Score=50.26 Aligned_cols=192 Identities=15% Similarity=0.121 Sum_probs=116.1
Q ss_pred cceeeeeeecC-CCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCC
Q 002471 627 SFKEANSVRAS-TSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 627 s~~~~~~l~~H-~~~V~~l~fspdg~~Latgs~Dg--~V~iwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg 702 (918)
+++.+.++... ..-.-.+.|..+|.++-+.+.-| .|+.+|+++++......-.. ---..|+.. +++.....=.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence 34444554422 23345678878888888887766 79999999998776554221 122223333 233333334588
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--------CceEEEEecC
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPH 774 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~ 774 (918)
...+||.++ -+.+..+. ..+.=+.|+. ++..++ .++....|+++|..+.+..+.+.. ..+.+.|.
T Consensus 111 ~~f~yd~~t-l~~~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 111 TGFVYDPNT-LKKIGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp EEEEEETTT-TEEEEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred eEEEEcccc-ceEEEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 999999987 55666664 3456677874 456666 555577899999988776665532 22334554
Q ss_pred CCEEEEEEc-CCeEEEEECCCceEEEEecC------------C---CCCeEEEEEcCCCCEEEEEeCC
Q 002471 775 LGRYLAAAA-ENVVSILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED 826 (918)
Q Consensus 775 ~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~------------h---~~~V~si~~spdg~~Las~s~d 826 (918)
++.+++-.. ...|...|..+|+++..+.. . ..-.+.|+|+|....|...+..
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 456666554 67899999999998876521 1 3458899999988766655554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.049 Score=49.37 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=65.8
Q ss_pred eEEEEEcC---CCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 808 IDSVCWDP---SGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 808 V~si~~sp---dg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
|+++++.. ||. .|++|++| .||+|+-. ..+.++.. ...|..++-... ..|+.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 55666544 444 88999999 99999854 45566554 455666665555 569999999999999863332
Q ss_pred EEEEcccCCCeEEEEEeC-CC---CEEEEEecCCcEEE
Q 002471 883 TMTLTAHEGLIAALAVST-ET---GYVASASHDKFVKL 916 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~sp-dg---~~Lasgs~Dg~I~I 916 (918)
..++ ....+.++++.. ++ .-|++|-.+|.|-+
T Consensus 75 -WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 -WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2333 233366665543 32 25888888998854
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.021 Score=64.18 Aligned_cols=141 Identities=9% Similarity=0.071 Sum_probs=95.9
Q ss_pred CCCEE-EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCe-------EEEEEeCCCcEEEEEcCCCee--eE
Q 002471 691 SMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-------LICSCDGDGEIRYWSINNGSC--TR 760 (918)
Q Consensus 691 dg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~-------ll~sgs~Dg~I~iwdl~~~~~--~~ 760 (918)
+.++| .++..-..|+-.|++. ++.+..+.-+.. |.-+.+.|+.+. -| .|-.|..|+-||.+-... +.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceee
Confidence 33443 4445556688888887 778888876666 777777776432 22 466789999999884322 11
Q ss_pred E-----eecCce-EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002471 761 V-----FKGGTA-QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 834 (918)
Q Consensus 761 ~-----~~~~~~-~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~ 834 (918)
. |..... .+......+++++|+.+|.|++||.-.......+.+...+|..|..+.+|++|++.+...+.+.++.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1 111111 1222334589999999999999998444445556778899999999999999998888866666653
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.056 Score=64.61 Aligned_cols=216 Identities=14% Similarity=0.102 Sum_probs=114.5
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCee
Q 002471 691 SMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC 758 (918)
Q Consensus 691 dg~~Lasgs~D------g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~~~~~ 758 (918)
.+.+++.|+.+ ..|..||..+.......-........++++.. +.++++|+.| ..+..||.++.+-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 34566667665 35788888764222111111333344555553 4677788888 3577888887764
Q ss_pred eEE--eecCceEEEE-ecCCCEEEEEEcCC-----eEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC--
Q 002471 759 TRV--FKGGTAQMRF-QPHLGRYLAAAAEN-----VVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED-- 826 (918)
Q Consensus 759 ~~~--~~~~~~~v~~-sp~~~~ll~~~~dg-----~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d-- 826 (918)
... +......+.. .-++..+++|+.|| .|..||.++.+.... +......+-.+. -+|.+.++|+.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCC
Confidence 332 1222222222 33445566666665 688888887643322 211111122222 247777776633
Q ss_pred -----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEEcccCCCeEEE
Q 002471 827 -----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAAL 896 (918)
Q Consensus 827 -----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-----~I~vwd~~~~~~~~~~~h~~~V~~l 896 (918)
+|..||..+.. ...+..+........ +..-++...++||.|+ +|..||..+.+...+..-......+
T Consensus 440 ~~~l~sve~YDP~t~~-W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNT-WTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCc-eeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 47888887652 222222222122222 2223566677777665 5889999988877543322222222
Q ss_pred EE-eCCCCEEEEEecCCc
Q 002471 897 AV-STETGYVASASHDKF 913 (918)
Q Consensus 897 a~-spdg~~Lasgs~Dg~ 913 (918)
.+ .-+++..+.|+.||.
T Consensus 517 g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred cEEEECCEEEEEecccCc
Confidence 21 235667777888764
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=1.2 Score=49.82 Aligned_cols=268 Identities=10% Similarity=0.062 Sum_probs=131.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEe----ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL----EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l----~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
...+++|+|..+..-+|+|. +|.|..= .+.++.-... ......+.+|.|..+ ..+++ +..+. ||..++.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCCC
Confidence 55799999986666676664 4543321 1222221111 112334778888643 34444 44453 33334334
Q ss_pred ceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----ecCceEEEEecCCCEEEEEEcCCe
Q 002471 714 YSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 714 ~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
.....+. ........+..... ..++ .++..|.|..=+ +.++.-..+ .+....+.+.+++ .+++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCce
Confidence 3333221 11111222222222 2233 233344443322 122211111 2334566777764 5556666666
Q ss_pred EEEE-ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-ccCCCceEEEEEeCCCCEE
Q 002471 787 VSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 787 I~i~-D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~-~~~~~~i~~i~~sp~g~~l 864 (918)
+..- |.....-..........++++.+.+++++++++..+.+++=....+.....+..- ......+..+.+.+++. +
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence 5543 2221111112223456789999999999887776665433233344332222111 11224577888988776 5
Q ss_pred EEEEcCCeEEEEECCCCcEEEE-c---ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 865 LVIGCYQSLELWNMSENKTMTL-T---AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~~~-~---~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++++.+|.|. .....++.... . .-....+.+.|..+++.++ ++..|.|..|+
T Consensus 274 ~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 5566677655 34455554422 1 2234578888877776655 45678877664
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.27 Score=60.56 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=68.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCC--------eEEEEECC----------------CCCEEEEEeCCCeEE
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 705 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~Dg~V~ 705 (918)
+..|++++.++.|+-.|..+++.+-++...... ...+.+.. ++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888888888888888776543211 12233321 345888899999999
Q ss_pred EEeCCCCCceeEEeccCCCCee-------------EEEEcC--CCCeEEEEEeC----------CCcEEEEEcCCCeeeE
Q 002471 706 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 760 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~-------------sl~fsp--~~~~ll~sgs~----------Dg~I~iwdl~~~~~~~ 760 (918)
-.|.++ ++.+..+. ..+.|. .+.-.| .++.+| .++. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999998 44444332 111110 011111 123344 4432 6889999999999988
Q ss_pred Eeec
Q 002471 761 VFKG 764 (918)
Q Consensus 761 ~~~~ 764 (918)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0016 Score=65.85 Aligned_cols=139 Identities=14% Similarity=0.057 Sum_probs=81.1
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-EEe---ecCceE-
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVF---KGGTAQ- 768 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~---~~~~~~- 768 (918)
.|...+.||.|+-++++.-....+...-|..-..-+.+ +. -++.|+.+|.|++|+..-.... ..+ ...+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34445668888888876533222322222222111222 23 3457888999999998732111 111 111111
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC-CCeEEEEEcCCCCEEEEE--eCC-eEEEEECCCC
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG 836 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~-~~V~si~~spdg~~Las~--s~d-~I~iwdl~s~ 836 (918)
+....++...++++.++.|+.|.+.-.+.+-....|. .++........+++|++. +.+ .++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 1222233467778889999999998888777766676 556666666666666666 666 7788887644
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=1 Score=49.21 Aligned_cols=267 Identities=12% Similarity=0.100 Sum_probs=117.9
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeeEec--cC---CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-~~~~~~~l~--~h---~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
...+.+|.|..+..-+|+|. .+.| +... -++.-.... .. .-...+|.|..+ ..++ ++..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~D- 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTD- 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESS-
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecC-
Confidence 44799999996666666654 4543 3332 222211111 11 224667777643 3444 44455 3333333
Q ss_pred CCceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-e---ecCceEEEEecCCCEEEEEEcC
Q 002471 712 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-F---KGGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 712 ~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~---~~~~~~v~~sp~~~~ll~~~~d 784 (918)
++..-..+. .-......|....++ ..+++ +..|.|+.= .+.++.-.. . .+.+..+...+++.+++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 344333321 122334444444433 33323 334544332 122221111 1 2344555667776655555555
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC-CCCCc-ceEEEeccCCCceEEEEEeCCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-SGSEG-ECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~-s~~~~-~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
..+.-||.-...-...-+.....|.++.|.+++.+.+++..+.|++=+.. ..+.. +.+..+......+..++|.+++.
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 55567776543222222335678999999999887766644477777621 11100 11111222344588999998877
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEc----ccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 863 SLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~~~~----~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
..++ +..|.| +.....|+.-... .-...++.|.|..+.+-+| .+.||.|.-|
T Consensus 246 ~wa~-gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAV-GGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEEE-ESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EEEE-eCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 5554 444533 3455666655322 2345688888876655454 4578887665
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.70 E-value=2.5 Score=51.61 Aligned_cols=240 Identities=13% Similarity=0.020 Sum_probs=124.1
Q ss_pred CCCeEEEEEcc-C---CCEEEEEe---CCCcEEEEECCCC-c--eeeEeccCCCCeEEEE--ECCC-CCEEEEEeCCCeE
Q 002471 638 TSKVICCHFSS-D---GKLLATGG---HDKKAVLWHTDTL-K--SKTNLEEHSSLITDVR--FSPS-MPRLATSSFDKTV 704 (918)
Q Consensus 638 ~~~V~~l~fsp-d---g~~Latgs---~Dg~V~iwd~~~~-~--~~~~l~~h~~~V~~l~--fspd-g~~Lasgs~Dg~V 704 (918)
-++|.+++.-. + ..-|+||+ .||+++|..-.-+ . ....+.+ -..++.++ +.++ ..+|+.+- -+.-
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eT 430 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISET 430 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccce
Confidence 45787777654 2 24566554 6899999864321 1 1223334 45677777 4442 22555443 3345
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEc
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~ 783 (918)
++..+... .......+.......+..+-- ++.++=. ....||+++-..........+..+....+.+...+++++.
T Consensus 431 rvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQv--Ts~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~ 507 (1096)
T KOG1897|consen 431 RVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQV--TSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGG 507 (1096)
T ss_pred EEEEEccc-eEEeccccccccCceEEEEccCCceEEEE--ecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecC
Confidence 56666542 222222233333333433322 2222211 1345777765422222222344455555555567777777
Q ss_pred CCeEEEEECCCceEEEEe-cCCCCCeEEEEEcCCC------CEEEEEeCC--eEEEEECCCCCCcceEEEecc--CCCce
Q 002471 784 ENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSG------ELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKF 852 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l-~~h~~~V~si~~spdg------~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~--~~~~i 852 (918)
++.+...++......... ...+..|.|+.++|-| ++++.|..+ .+.+.-..+. ...+...+.. -...|
T Consensus 508 ~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~-~~~~~~~l~~~~iPRSI 586 (1096)
T KOG1897|consen 508 GLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL-ILITHEQLSGEIIPRSI 586 (1096)
T ss_pred ccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc-ceeeeeccCCCccchhe
Confidence 788877777766522211 2245678999998742 267777766 3333333222 1111111221 12234
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcE
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELW--NMSENKT 883 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vw--d~~~~~~ 883 (918)
.-..|--|..+|+++..||.+..| |..++..
T Consensus 587 l~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 587 LLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred eeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 555666678899999999977655 5555543
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.1 Score=47.30 Aligned_cols=251 Identities=12% Similarity=0.037 Sum_probs=137.0
Q ss_pred CCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---ceeeEeccCCCCeEEEEECCC
Q 002471 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPS 691 (918)
Q Consensus 615 ~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~fspd 691 (918)
.+.+..|+...-+-.++..+... +--+++.. .|+++.++..|.-+.++|+.+. .....+.........++.+
T Consensus 106 sGL~IvDIS~P~sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS-- 180 (370)
T COG5276 106 SGLRIVDISTPDSPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS-- 180 (370)
T ss_pred CceEEEeccCCCCcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--
Confidence 45566777766555555555432 33444444 4789999887777888888743 3344444455555666665
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEecc-CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----Cc
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GT 766 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~ 766 (918)
|++-+.++.|+-+.|-|+.++..++..-.- ....+.++..+++.. ++ ...+--+.+-|..+.+....+.. ..
T Consensus 181 Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~--vvy~egvlivd~s~~ssp~~~gsyet~~p 257 (370)
T COG5276 181 GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YL--VVYDEGVLIVDVSGPSSPTVFGSYETSNP 257 (370)
T ss_pred cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EE--EEcccceEEEecCCCCCceEeeccccCCc
Confidence 668888888999999999886655433222 233677787776532 33 23355677778777664444321 11
Q ss_pred eEE-EEecCCCEEEEEEcCCeEEEEECCCceEEE---EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceE
Q 002471 767 AQM-RFQPHLGRYLAAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV 842 (918)
Q Consensus 767 ~~v-~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~---~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i 842 (918)
.++ .+.-.+++..++..+..+.+.|+.+....+ .+......-..+... +.++.....+...+.|....+. .
T Consensus 258 ~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~---m 332 (370)
T COG5276 258 VSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSM---M 332 (370)
T ss_pred ccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCCceEEEeCCChhh---c
Confidence 111 234445566666666666666665532111 111111111222222 4444444444555555543211 1
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
....+....+.++..+-+.+.+.....++.+.||+.
T Consensus 333 ~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 333 DKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 111111222344444445557777777888888875
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.48 Score=50.24 Aligned_cols=185 Identities=14% Similarity=0.205 Sum_probs=107.0
Q ss_pred ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 720 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
.+-...|.++.|+|+.+.|+++.. ...-.||=...|..++++.. ....+.+.-.+.+.++--.++.++++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n-~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTN-KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecC-CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455566999999999888885554 45555565566888887653 3455777766555555555777877765543
Q ss_pred eEE-------EEec--CC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-------CCceEEEEE
Q 002471 796 ACR-------LSLQ--GH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVF 857 (918)
Q Consensus 796 ~~~-------~~l~--~h-~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-------~~~i~~i~~ 857 (918)
..+ ..+. .+ ......++|+|....|+.+-+. -+.||.+........++....+ -..+..+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 1121 12 5678899999988866666665 4555544432211111111111 123566778
Q ss_pred eCCC-CEEEEEEcCCeEEEEECCCCcEE--EEcccC----C---CeEEEEEeCCCCEE
Q 002471 858 HPTY-PSLLVIGCYQSLELWNMSENKTM--TLTAHE----G---LIAALAVSTETGYV 905 (918)
Q Consensus 858 sp~g-~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~----~---~V~~la~spdg~~L 905 (918)
++.. ..++.+.+++.|.-.|......- .+.+.. . ....|+...+|.+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY 298 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY 298 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE
Confidence 7644 45555566677777777665322 222211 1 23467777777543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.51 Score=50.48 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=99.7
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-e-cCceEEEEecCCCEEEEEEcCCeEEEE-ECCCceEE-EE
Q 002471 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K-GGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQACR-LS 800 (918)
Q Consensus 725 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~-~~~~~v~~sp~~~~ll~~~~dg~I~i~-D~~t~~~~-~~ 800 (918)
.+.+.++++++..+.+....++.-.+|-...+...... . .......|++++...++...+...+++ +..++... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 68889999999877766633444444433333322222 2 345667799995555555555555555 33333221 11
Q ss_pred ec--CCCCCeEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCc------ceEEEeccCCCceEEEEEeCCCCEEEEEE
Q 002471 801 LQ--GHTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 801 l~--~h~~~V~si~~spdg~~Las~s----~d~I~iwdl~s~~~~------~~i~~~~~~~~~i~~i~~sp~g~~l~s~s 868 (918)
+. .....|..+.++|||..++... ...|.|--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 21 1122899999999999777665 336666655432222 11222223356788999999998777766
Q ss_pred cCCe-EEE-EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002471 869 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 869 ~dg~-I~v-wd~~~~~~~~~~~h~~~V~~la~spdg~~Lasg 908 (918)
..+. +.. +....+....+..-...+..++...+...++..
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t 226 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT 226 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE
Confidence 5542 333 444444333332333333333443333344333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.21 Score=56.72 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=32.8
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC
Q 002471 766 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 807 (918)
Q Consensus 766 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~ 807 (918)
...+..+|++...+++..-|+|.++|+.++..++.+++..+.
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 345778899776666666689999999999888888876553
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.26 Score=50.20 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=88.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEE
Q 002471 680 SSLITDVRFSPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~D---------g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 750 (918)
....++-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.|+|..+.+.+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 3456666788999984332222 4455555432 122222222334568899887777778888889988
Q ss_pred EE--cCCCe-----eeEEeec-------CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcC
Q 002471 751 WS--INNGS-----CTRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 815 (918)
Q Consensus 751 wd--l~~~~-----~~~~~~~-------~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp 815 (918)
|| ..++. .+..++. ....+++..++..++++-..++|..+|..+++.+.+++-....|+|+||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 88 44543 2222221 112355566777788888889999999999999999998899999999974
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.4 Score=50.03 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=58.9
Q ss_pred CCeEEEEEccCCCEEEEEe-----------CCC-cEEEEECC--CCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 639 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTD--TLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs-----------~Dg-~V~iwd~~--~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
.....|+|.++|+++++-. ..+ .|.+++-. +++ ....+.......+.|+|.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 5678899999998877753 223 67777643 233 234444444567889999888 44455554
Q ss_pred eEEEEeCCCCC----c---eeEEecc----CCCCeeEEEEcCCCCeEEEEE
Q 002471 703 TVRVWDADNPG----Y---SLRTFMG----HSASVMSLDFHPNKDDLICSC 742 (918)
Q Consensus 703 ~V~Iwdl~~~~----~---~~~~~~~----h~~~V~sl~fsp~~~~ll~sg 742 (918)
.+++.|.+..+ . .+..+.. +......++|.|+|..++..+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44454654321 1 1112222 134467899999876444333
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.039 Score=66.86 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=72.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCee
Q 002471 649 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 727 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~ 727 (918)
.+..++.|+..|.|-..|+... .....-..-.++|++++|+.+|+.++.|-.+|.|.+||+.. +..++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 3457888888888988887642 22222234567899999999999999999999999999997 677777777776666
Q ss_pred EEEE---cCCCCeEEEEEeCCCcEEEEEc
Q 002471 728 SLDF---HPNKDDLICSCDGDGEIRYWSI 753 (918)
Q Consensus 728 sl~f---sp~~~~ll~sgs~Dg~I~iwdl 753 (918)
++-+ ..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5544 33333 4557766665 5554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.2 Score=52.45 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=109.1
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEc-CC-eEEEEECCCceEEEEecCCCC--C
Q 002471 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-EN-VVSILDAETQACRLSLQGHTK--P 807 (918)
Q Consensus 732 sp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~-dg-~I~i~D~~t~~~~~~l~~h~~--~ 807 (918)
.+|+.+.+++.+++|.|..- ..+......+.++|....-++... -| ...+||........++...+. .
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 45566666666666554321 112223344667776655444433 34 467788887765554433222 1
Q ss_pred eEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc------C-----
Q 002471 808 IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------Y----- 870 (918)
Q Consensus 808 V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~------d----- 870 (918)
.-.-+|++||.+|+..-.| .|-|||.+. ....+.++..++-..+.+.|.+||+.++++.. |
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEeccc--ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 2234799999999887654 489999983 45677888888888999999999999888754 1
Q ss_pred -------CeEEEEECCCCcEE---EEc--ccCCCeEEEEEeCCCCEEEEEec
Q 002471 871 -------QSLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASASH 910 (918)
Q Consensus 871 -------g~I~vwd~~~~~~~---~~~--~h~~~V~~la~spdg~~Lasgs~ 910 (918)
-++.+.|..++.++ ++. .+.-.|..++..+||..++.+-.
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 14556666666655 333 35567899999999987776543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.19 Score=60.15 Aligned_cols=176 Identities=6% Similarity=0.007 Sum_probs=87.4
Q ss_pred CCeEEEEEeCC------CcEEEEEcCCCeeeEE--eecCc-eEEEEecCCCEEEEEEcCC-----eEEEEECCCceEEE-
Q 002471 735 KDDLICSCDGD------GEIRYWSINNGSCTRV--FKGGT-AQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRL- 799 (918)
Q Consensus 735 ~~~ll~sgs~D------g~I~iwdl~~~~~~~~--~~~~~-~~v~~sp~~~~ll~~~~dg-----~I~i~D~~t~~~~~- 799 (918)
++.+++.|+.+ ..+..||..+...... +.... .......++..++.|+.++ .+.+||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 35677777753 3477889887653221 11111 1122333445556666543 58889988764332
Q ss_pred -EecCCCCCeEEEEEcCCCCEEEEEeCC------------------------eEEEEECCCCCCcceEEEeccCCCceEE
Q 002471 800 -SLQGHTKPIDSVCWDPSGELLASVSED------------------------SVRVWTVGSGSEGECVHELSCNGNKFHS 854 (918)
Q Consensus 800 -~l~~h~~~V~si~~spdg~~Las~s~d------------------------~I~iwdl~s~~~~~~i~~~~~~~~~i~~ 854 (918)
.+.........+. -+|++.+.|+.+ .|..||..+.. ...+..+... ....
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~~~--r~~~ 457 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFWTG--TIRP 457 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCCcc--cccC
Confidence 1111111122222 257766666542 46677776541 1222222111 1111
Q ss_pred EEEeCCCCEEEEEEcC------CeEEEEECCC-CcEEEEc---ccCCCeEEEEEeCCCCEEEEEecCC--cEEEe
Q 002471 855 CVFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLT---AHEGLIAALAVSTETGYVASASHDK--FVKLW 917 (918)
Q Consensus 855 i~~sp~g~~l~s~s~d------g~I~vwd~~~-~~~~~~~---~h~~~V~~la~spdg~~Lasgs~Dg--~I~IW 917 (918)
.+..-++...++||.+ ..|..||..+ .+...+. ........++ -++++.++||.|| .|..|
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence 1223355666666654 2478899987 5544222 2222222222 3778888999888 44444
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.19 Score=55.79 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=87.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~----~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
..++|.+|.||+|.+.||+--.|++|.+++....+. ..+.+..+..|...+|+.+ ..+|..+..| |.+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 456899999999999999999999999999743222 2223344566999999865 5677666555 888888876
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCe
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGS 757 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I~iwdl~~~~ 757 (918)
...++..+.|...|.-..|+++..-++.+.+ ..+++.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 7778888889999999999998665554444 44555555555544
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=67.34 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=66.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCee-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
...|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...|+ +++|.|||+ +++.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 3458889999999999999999999999887 455667766777777 999999965 777999999999999999877
Q ss_pred eEE
Q 002471 759 TRV 761 (918)
Q Consensus 759 ~~~ 761 (918)
+..
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 665
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=2.3 Score=48.18 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=86.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCC-CC
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-AS 725 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~-~~ 725 (918)
+| .++++..||.|.-+|.++++.+.....- ...+.+-.+..+|+ |+.++.+|.+..+|.++ +..+..+.... ..
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEecCCCeE
Confidence 44 4455577888888888888766443322 12233333333564 88888899888888876 55555554443 11
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce-E--EE--EecCCCEEEEEEc--CCeEEEEECCCceEE
Q 002471 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-Q--MR--FQPHLGRYLAAAA--ENVVSILDAETQACR 798 (918)
Q Consensus 726 V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~--v~--~sp~~~~ll~~~~--dg~I~i~D~~t~~~~ 798 (918)
+..-.+..+ ..++.++.+|.+...|..+++.+..+..... . +. .....+.++.+.. ++.+.-+|.+++..+
T Consensus 145 ~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 122222222 2343454789999999998888766543321 1 11 1123355555555 567888888888877
Q ss_pred EEe
Q 002471 799 LSL 801 (918)
Q Consensus 799 ~~l 801 (918)
...
T Consensus 223 w~~ 225 (370)
T COG1520 223 WSQ 225 (370)
T ss_pred eee
Confidence 764
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.4 Score=49.45 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=111.3
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC----CCCCE--EEEEeC-C---CeEEEEeCCCCCceeE
Q 002471 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSSF-D---KTVRVWDADNPGYSLR 717 (918)
Q Consensus 648 pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs----pdg~~--Lasgs~-D---g~V~Iwdl~~~~~~~~ 717 (918)
|...+|+...+++-+.+||+. ++.+..+.. +.++.|..- -+++. |+.++. + .+|+||.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 344577888888999999986 455555542 233333321 13432 445443 2 4699998874333344
Q ss_pred Eecc-------CCCCeeEEEEc--C-CCCeEEEEEeCCCcEEEEEcC---CC----eeeEEeec--CceEEEEecCCCEE
Q 002471 718 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRY 778 (918)
Q Consensus 718 ~~~~-------h~~~V~sl~fs--p-~~~~ll~sgs~Dg~I~iwdl~---~~----~~~~~~~~--~~~~v~~sp~~~~l 778 (918)
.+.. ....++.+|+. + ++..+++....+|.+..|.+. .+ +.++.|.. .+..+......+.+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3322 12347778874 3 356677788889999888875 22 35666654 45667788888999
Q ss_pred EEEEcCCeEEEEECCC-----ceEEEEecC--CCCCeEEEEEc--CCCC-EEEEEeCC--eEEEEECCCC
Q 002471 779 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWD--PSGE-LLASVSED--SVRVWTVGSG 836 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~si~~s--pdg~-~Las~s~d--~I~iwdl~s~ 836 (918)
+++-.+--|.-|+.+- +..+....+ ....|..|++- .+++ ||++.+.+ +..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999998762 233333322 34567777774 3454 77777765 8999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=2.7 Score=47.90 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcc--eEEEecc--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 804 HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 804 h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~--~i~~~~~--~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
....+..+.|.+++.+++++..+.+ +|....+.... .+..... ....+..+.|.+++. +++++..|.|.+.. .
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-D 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-C
Confidence 3456889999999998877765543 33333332111 2222222 224588888987766 56666777666553 4
Q ss_pred CCcEEEE----cccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 880 ENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 880 ~~~~~~~----~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.++.... ..-...++.+.|..+++.+++ +.+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 5554422 233457889999877766655 468887665
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.27 E-value=2.8 Score=47.30 Aligned_cols=218 Identities=10% Similarity=0.026 Sum_probs=102.3
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCCC---ceeEEecc---CC----CCeeEEEEcCCCCeEEEEE--eC----CCcEEEEEc
Q 002471 691 SMPRLATSS-FDKTVRVWDADNPG---YSLRTFMG---HS----ASVMSLDFHPNKDDLICSC--DG----DGEIRYWSI 753 (918)
Q Consensus 691 dg~~Lasgs-~Dg~V~Iwdl~~~~---~~~~~~~~---h~----~~V~sl~fsp~~~~ll~sg--s~----Dg~I~iwdl 753 (918)
+.++|+..+ ..+.|+|+|+.+.. +..+++.. +. ..-..+...|+|+.+| ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777777 57889999998532 22333332 11 1222344456665444 43 22 356888888
Q ss_pred CCCeeeEEeecC------ceEEEEecCCCEEEEEEc--------------------CCeEEEEECCCceEEEEecCCCC-
Q 002471 754 NNGSCTRVFKGG------TAQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK- 806 (918)
Q Consensus 754 ~~~~~~~~~~~~------~~~v~~sp~~~~ll~~~~--------------------dg~I~i~D~~t~~~~~~l~~h~~- 806 (918)
++.+.+...+.. ...+-|.|..+.++++.. ..++.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 887777666542 234667887777777643 34899999999999988864332
Q ss_pred -CeEEEEEcCC--CCEEEEEe-CC-eEEEEECCCCCCcc--eEEEeccC-----------------CCceEEEEEeCCCC
Q 002471 807 -PIDSVCWDPS--GELLASVS-ED-SVRVWTVGSGSEGE--CVHELSCN-----------------GNKFHSCVFHPTYP 862 (918)
Q Consensus 807 -~V~si~~spd--g~~Las~s-~d-~I~iwdl~s~~~~~--~i~~~~~~-----------------~~~i~~i~~sp~g~ 862 (918)
....|.|..+ ..+-++++ -. +|..|--....... .+..+... ..-|+.|..+.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 3456676553 44433333 33 55444332222111 11111110 23478999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCcEEE-----Ecc---------------cCCCeEEEEEeCCCCEEEEEe
Q 002471 863 SLLVIGC-YQSLELWNMSENKTMT-----LTA---------------HEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 863 ~l~s~s~-dg~I~vwd~~~~~~~~-----~~~---------------h~~~V~~la~spdg~~Lasgs 909 (918)
+|++++. .|.|+.||+.....-. ..+ -.+...-|..|.||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998886 6799999998743221 111 112336678888998877654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.5 Score=46.21 Aligned_cols=220 Identities=12% Similarity=0.121 Sum_probs=104.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEecc--C---CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H---SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~--h---~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 754 (918)
...+.+|.|..+..-+++|. .+. |+...++++.-..... . .....+|.|.. ...+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 45789999995555566654 453 4444444433222211 1 12366777764 3344444 344 3344444
Q ss_pred CCeeeEEe------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e
Q 002471 755 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 827 (918)
Q Consensus 755 ~~~~~~~~------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~ 827 (918)
.++.-..+ .+....+....+ +..++++..|.|+.-.-.-..-..........+..+..++||++++++..+ .
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44322221 222222333333 234444444444332221112222234455778899999999999999888 6
Q ss_pred EEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-CCCcEEE---Ec--ccCCCeEEEEEeCC
Q 002471 828 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMT---LT--AHEGLIAALAVSTE 901 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~-~~~~~~~---~~--~h~~~V~~la~spd 901 (918)
+.-||-... .-...-......|..+.|.+++...+ ....+.|++=+. ...+... .. ...-.+.+++|.++
T Consensus 168 ~~s~~~G~~---~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 168 YSSWDPGQT---TWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEE-TT-S---S-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEecCCCc---cceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 667875421 11112222467899999999977555 458888888872 2222221 11 12234889999998
Q ss_pred CCEEEEEecC
Q 002471 902 TGYVASASHD 911 (918)
Q Consensus 902 g~~Lasgs~D 911 (918)
+...|+|+..
T Consensus 244 ~~~wa~gg~G 253 (302)
T PF14870_consen 244 NEIWAVGGSG 253 (302)
T ss_dssp S-EEEEESTT
T ss_pred CCEEEEeCCc
Confidence 8877766544
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=2 Score=45.09 Aligned_cols=236 Identities=13% Similarity=0.042 Sum_probs=143.8
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEe
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 719 (918)
.-..|+-.+||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++-+.. -|.-.|-++.. +..|
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e--vt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE--VTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc--eEEe
Confidence 45678889999999999888889888988998777766666677788888988877665443 35555554422 2222
Q ss_pred c----cCCCCeeEEEEcCCCCeEEEEEeC---------CCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCe
Q 002471 720 M----GHSASVMSLDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 720 ~----~h~~~V~sl~fsp~~~~ll~sgs~---------Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
. .-........|.+.|...| ++.. .+.|++|+...+ .....++..|++...++.-.++.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWF-t~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWF-TGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ecccccCCCcccceeeCCCccEEE-eeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccc
Confidence 2 2334567788888876443 6542 133444443322 24567888999988888888888
Q ss_pred EEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 787 VSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 787 I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
|...|..++..... -.......+.+--+|-|+.-++.... .+..||-.... -....+.+....-.++.+...++.
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcE
Confidence 88888877632111 11112344556666777766664444 67777654321 122333333444445555555554
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcc
Q 002471 864 LLVIGCYQSLELWNMSENKTMTLTA 888 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~~~~~~~ 888 (918)
.++-...+.|.-||-++.....+..
T Consensus 290 W~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 290 WLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred EeeccccCceeecCcccceEEEecC
Confidence 4444445566666666655444443
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.8 Score=54.01 Aligned_cols=177 Identities=14% Similarity=0.193 Sum_probs=102.9
Q ss_pred cCCCCeEEEEEC---C----CCCEEEEEeCCCeEEEEeC------CCCC--------ceeEEecc---CCCCeeEEEEcC
Q 002471 678 EHSSLITDVRFS---P----SMPRLATSSFDKTVRVWDA------DNPG--------YSLRTFMG---HSASVMSLDFHP 733 (918)
Q Consensus 678 ~h~~~V~~l~fs---p----dg~~Lasgs~Dg~V~Iwdl------~~~~--------~~~~~~~~---h~~~V~sl~fsp 733 (918)
....+|..|+|. . ..++|++= ....+.|+.. .... .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888888 2 12344443 4555667661 1100 12223321 234677899999
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEE
Q 002471 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 813 (918)
Q Consensus 734 ~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~ 813 (918)
....-||..+..|...|||+......+ .. ...+.....|.| ++|.+. ......|+|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e----------~s~w~rI~W 211 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEE----------LSNWKRILW 211 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCcc----------cCcceeeEe
Confidence 877788899999999999992221110 00 011111122333 333321 145668899
Q ss_pred cCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 814 DPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 814 spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
..+...|++++...+.++|+++......+. .......|..+.-++.....+..-....|..+|+..
T Consensus 212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNRSKLMLIDFESNWQTEYLV-TAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcCCceEEEECCCCCccchhc-cCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 998889999998899999998765433222 222356688888777733222222336677777766
|
These proteins are found in fungi. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.14 E-value=3.5 Score=47.13 Aligned_cols=223 Identities=11% Similarity=0.139 Sum_probs=119.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCce---eEEeccCCCCeeEEEEcC---C-CCeEEEEEeCCCcEEEEEcCCCe------
Q 002471 691 SMPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHP---N-KDDLICSCDGDGEIRYWSINNGS------ 757 (918)
Q Consensus 691 dg~~Lasgs~Dg~V~Iwdl~~~~~~---~~~~~~h~~~V~sl~fsp---~-~~~ll~sgs~Dg~I~iwdl~~~~------ 757 (918)
+...|++||..|.+|||+....+.. +..-..-..+|..|.+-. . ....| +.=.-..+.||.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCCcccC
Confidence 3458999999999999998653311 222233557787776532 2 22233 33446777788773211
Q ss_pred ------eeEE--eecCceEEEEecCC-----CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002471 758 ------CTRV--FKGGTAQMRFQPHL-----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 824 (918)
Q Consensus 758 ------~~~~--~~~~~~~v~~sp~~-----~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s 824 (918)
.+.. +......+++-+-+ ..+.+=+.||.+.+|+-+.....+.+.+ .---..++|.+.-+.|++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 1111 11122233333322 4556667799999999887765555543 11223457778788888888
Q ss_pred CC-eEEEEECCC--------------------CCCcceEEEeccCCCceEEEE---EeCCCCEEEEEEcCCeEEEEECCC
Q 002471 825 ED-SVRVWTVGS--------------------GSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 825 ~d-~I~iwdl~s--------------------~~~~~~i~~~~~~~~~i~~i~---~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
.+ .|..|.... ++.......+.. +..+..+. ++.....|++-+ .+.+.+.+..
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~- 270 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN- 270 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-
Confidence 87 888886521 111112222222 22333333 333333444444 3556666654
Q ss_pred CcEEEEcccCCCeEEEE-Ee----CCC---CEEEEEecCCcEEEeC
Q 002471 881 NKTMTLTAHEGLIAALA-VS----TET---GYVASASHDKFVKLWK 918 (918)
Q Consensus 881 ~~~~~~~~h~~~V~~la-~s----pdg---~~Lasgs~Dg~I~IWd 918 (918)
|.+...+..+....|++ |. .++ ..++.+++++.+.||+
T Consensus 271 G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 271 GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 44443333333333332 21 122 2488889999999884
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0083 Score=42.05 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCC
Q 002471 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39 (918)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~ 39 (918)
+..|+..|++||.+.|+.++|++|..|..+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999997654
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.1 Score=47.01 Aligned_cols=209 Identities=16% Similarity=0.107 Sum_probs=125.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE
Q 002471 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 761 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~ 761 (918)
.-..|+-.+||..-+++...+.|--.|-.+ ++....-.+....-..|..-||+...|+ ....-|.-+|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEe
Confidence 345677788998888888888888888887 4444444555556667888898876662 2222666677766554321
Q ss_pred -ee-----cCceEEEEecCCCEEEEEEc---------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002471 762 -FK-----GGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 826 (918)
Q Consensus 762 -~~-----~~~~~v~~sp~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d 826 (918)
+. .......|.+++...+++.. .+.|++|+.-. ...-..||..|||.+.++.-.+
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEeccc
Confidence 11 23456778888877777653 23455555432 2345678999999976665555
Q ss_pred -eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCC
Q 002471 827 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG 903 (918)
Q Consensus 827 -~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~ 903 (918)
.|...|..++.. +.+..-.........+-.+|-+..-++....+.+..||-...... .+.+....-.++.++..++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 677777665521 222222221333455566677777777666778888776655433 3334333444444444444
Q ss_pred E
Q 002471 904 Y 904 (918)
Q Consensus 904 ~ 904 (918)
.
T Consensus 289 V 289 (353)
T COG4257 289 V 289 (353)
T ss_pred E
Confidence 3
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.014 Score=59.23 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=76.5
Q ss_pred EEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 654 ATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 654 atgs~Dg~V~iwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
..-+.||.|+-+++...+.... -..|...- ....-+..|++|+.+|.|.+|...-.+.....+..-...|.++.-.
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 3345677887777654322111 11122221 1122356799999999999998875444443333344445444333
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002471 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 794 (918)
Q Consensus 733 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t 794 (918)
-+...+.++++.||.||.|++.-.+.+.....+.. .++..+++.+.++.|.+|++..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----~~~e~~ivv~sd~~i~~a~~S~ 167 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----ESGEELIVVGSDEFLKIADTSH 167 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccC-----CCcceeEEecCCceEEeecccc
Confidence 33344888999999999999988776654432221 2334555555566666665443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0029 Score=74.47 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=78.8
Q ss_pred eeeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECC--CCceeeEe-----ccCCCCeEEEEECC---CCCEEEEEeC
Q 002471 632 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNL-----EEHSSLITDVRFSP---SMPRLATSSF 700 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~--~~~~~~~l-----~~h~~~V~~l~fsp---dg~~Lasgs~ 700 (918)
..+++-.+.|-.+.|-. +...++ -.-|.+.|||++ .|+....+ ......+.-|.|+| +..++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 44567788888888854 222222 334678999986 44433322 23344556666665 5667777778
Q ss_pred CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002471 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 756 (918)
+++|++..+++ .....+.+|...++.++|...|-.+|..-+-||+|..|-+..|
T Consensus 204 ~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 204 GGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 89999888775 2335666799999999888776555656566666666655544
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.18 Score=50.49 Aligned_cols=106 Identities=11% Similarity=0.004 Sum_probs=63.7
Q ss_pred CCCEEEEEeC--CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceE
Q 002471 691 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 768 (918)
Q Consensus 691 dg~~Lasgs~--Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~ 768 (918)
+|.++.+.+. ...|++||+++ +..+....-....+..=-...-++.+..-.-.||.-.++|.++.+++..+.-....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~-gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT-GQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccC-ceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556666554 45699999997 44443322112222211111224445555667899999999999888777544444
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceE
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQAC 797 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 797 (918)
-....++..++.+....+++.-|.++...
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhh
Confidence 44455666677777777777777766543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.49 Score=54.47 Aligned_cols=145 Identities=11% Similarity=0.220 Sum_probs=89.5
Q ss_pred CCCeEEEEECCCCCEE-EEEe--CCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEE
Q 002471 680 SSLITDVRFSPSMPRL-ATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWS 752 (918)
Q Consensus 680 ~~~V~~l~fspdg~~L-asgs--~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwd 752 (918)
-.+|..++|. ||+.+ +|.- .+|.+++=|- ..+. .-..|..++|.|- ...++ +.-....|.||-
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds----~viG----qFEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWq 88 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS----KVIG----QFEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQ 88 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc----cEee----ccceeeeeeecCcccCCCCceE-EEeccceEEEEE
Confidence 3468899998 55544 4432 2444443221 2233 3345888999885 33566 455678999998
Q ss_pred cCC-----CeeeEEeec--------CceEEEEecCCCEEEEEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCCC
Q 002471 753 INN-----GSCTRVFKG--------GTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 753 l~~-----~~~~~~~~~--------~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spdg 817 (918)
+.- .+.+..-.. -...+.|+|....+.+-.....-.+++++.. .....+ ...+.|.|.||..||
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDG 167 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcC
Confidence 752 222221111 1234679999888777776665566666543 333334 356789999999999
Q ss_pred CEEEEEeCC--eEEEEECCC
Q 002471 818 ELLASVSED--SVRVWTVGS 835 (918)
Q Consensus 818 ~~Las~s~d--~I~iwdl~s 835 (918)
..|+++-.. .-+|||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 976665555 788998643
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.97 Score=55.76 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.2
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeecCce---------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 002471 738 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL 790 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---------------~v~~sp--~~~~ll~~~~----------dg~I~i~ 790 (918)
.|+.++.|+.|.-.|.++++.+..|..... .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 344777899999999999998876642110 001111 2356676643 5789999
Q ss_pred ECCCceEEEEecC
Q 002471 791 DAETQACRLSLQG 803 (918)
Q Consensus 791 D~~t~~~~~~l~~ 803 (918)
|.++++.+..+..
T Consensus 342 Da~TGkl~W~~~~ 354 (764)
T TIGR03074 342 DVNTGALVWAWDP 354 (764)
T ss_pred ECCCCcEeeEEec
Confidence 9999999988753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.36 Score=57.75 Aligned_cols=150 Identities=9% Similarity=0.057 Sum_probs=73.8
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEE--eecCc-eEEEEecCCCEEEEEEcC------CeEEEEECCCceEEEE
Q 002471 735 KDDLICSCDGD-----GEIRYWSINNGSCTRV--FKGGT-AQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLS 800 (918)
Q Consensus 735 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~--~~~~~-~~v~~sp~~~~ll~~~~d------g~I~i~D~~t~~~~~~ 800 (918)
++.+++.|+.+ ..+.+||..+.+.... +.... .......++..++.|+.+ +.+..||..+.+-...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 35566677765 3477888877653321 11111 111222344455555531 4688899887643321
Q ss_pred --ecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc
Q 002471 801 --LQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 869 (918)
Q Consensus 801 --l~~h~~~V~si~~spdg~~Las~s~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~ 869 (918)
+..... -.+++. .++.+++.|+.+ .+.+||..+.. ...+..+.........+.+ ++..+++||.
T Consensus 422 ~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred CCCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 111111 112222 346666666532 37888887642 1222111111111122222 5666666665
Q ss_pred C-----CeEEEEECCCCcEEEEccc
Q 002471 870 Y-----QSLELWNMSENKTMTLTAH 889 (918)
Q Consensus 870 d-----g~I~vwd~~~~~~~~~~~h 889 (918)
+ +.|.+||..+++...+...
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCCC
Confidence 4 4788999888876544443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.8 Score=56.00 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVL 664 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~i 664 (918)
.-.|..|.++++|++||..|..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 346899999999999999987654443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.9 Score=52.79 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
.-.|..|.++++|++|+..|..| |.|-.+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 34688999999999999998866 5555553
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.99 Score=46.08 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=40.9
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---C---eEEEE
Q 002471 651 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---K---TVRVW 707 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g---~V~Iw 707 (918)
+.|+.+...++|.+|++. ......+|..- +.|..+.++..|++|+|--.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 455554667789999988 44556666644 789999999999999997432 2 56766
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.59 E-value=4.1 Score=43.72 Aligned_cols=197 Identities=17% Similarity=0.146 Sum_probs=112.4
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECC-------CCceeeEecc-----CCCCeEEEEECCCCC------------EE
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RL 695 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~-------~~~~~~~l~~-----h~~~V~~l~fspdg~------------~L 695 (918)
.-+.|+|+|.+.+-++....++..+||.. ....+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888788999999986 1123334432 234678888875322 36
Q ss_pred EEEeCCCeEEEEeCCCCCc----eeEEec-cCCCCe-eEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeee--EEeecC
Q 002471 696 ATSSFDKTVRVWDADNPGY----SLRTFM-GHSASV-MSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCT--RVFKGG 765 (918)
Q Consensus 696 asgs~Dg~V~Iwdl~~~~~----~~~~~~-~h~~~V-~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~--~~~~~~ 765 (918)
+.+++||+|.-|.-.-... .+..+. .....| ..+++... +..|.++--..++|.+||-.-.+.. ..|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998532111 112222 112333 34555433 4556655556799999986543321 111111
Q ss_pred c-----eEEEEecCCCEE--------------EEEEcCCeEEEEECCCceEEEEec--CCCCCeEEEEEcC------CCC
Q 002471 766 T-----AQMRFQPHLGRY--------------LAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGE 818 (918)
Q Consensus 766 ~-----~~v~~sp~~~~l--------------l~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~si~~sp------dg~ 818 (918)
. ....+..-++.+ +.+..-|.|.+||..- ..+.++. +.-..-+.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 001111112222 2333346899998764 4444442 2233445666655 466
Q ss_pred EEEEEeCC-eEEEEECCCCC
Q 002471 819 LLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 819 ~Las~s~d-~I~iwdl~s~~ 837 (918)
+|+.--.| +|.+||..++.
T Consensus 263 lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eEEeecCCceeEEecCCCCc
Confidence 77765556 99999998773
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.2 Score=49.75 Aligned_cols=174 Identities=8% Similarity=-0.006 Sum_probs=80.2
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEE--e-----ecCc-eEEEEecCCCEEEEEEcC-----------CeEEEE
Q 002471 735 KDDLICSCDGD-----GEIRYWSINNGSCTRV--F-----KGGT-AQMRFQPHLGRYLAAAAE-----------NVVSIL 790 (918)
Q Consensus 735 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~--~-----~~~~-~~v~~sp~~~~ll~~~~d-----------g~I~i~ 790 (918)
++.+++.|+.+ ..|.+||+.+.+-... + .... .......++..++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 35566677653 3578899887654322 1 1111 111222334445555542 257788
Q ss_pred ECCCceEEEEecC----CCCCeEEEEEcCCCCEEEEEeC--------------CeEEEEECCCCCCcceEEEecc-C-CC
Q 002471 791 DAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELSC-N-GN 850 (918)
Q Consensus 791 D~~t~~~~~~l~~----h~~~V~si~~spdg~~Las~s~--------------d~I~iwdl~s~~~~~~i~~~~~-~-~~ 850 (918)
|.++.+-...-.. ....-.+++. -++++++.++. +.|.+||+.+.. ...+..... . ..
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r 242 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR 242 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence 8887643321100 0111112222 24565554431 257888887642 222211100 0 11
Q ss_pred ceEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEEccc------CCC--eEEEEEeCCCCEEEEE
Q 002471 851 KFHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAH------EGL--IAALAVSTETGYVASA 908 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~d--------------g~I~vwd~~~~~~~~~~~h------~~~--V~~la~spdg~~Lasg 908 (918)
...++ ..-++..++.|+.. +.|+.||..+.+-..+... ... ..++.+.-++++++.|
T Consensus 243 ~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~g 321 (341)
T PLN02153 243 SVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG 321 (341)
T ss_pred ceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEc
Confidence 11222 22346666676641 2678888887765433211 111 1233334445677777
Q ss_pred ecC
Q 002471 909 SHD 911 (918)
Q Consensus 909 s~D 911 (918)
+.+
T Consensus 322 G~~ 324 (341)
T PLN02153 322 GKL 324 (341)
T ss_pred CcC
Confidence 764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.58 Score=55.99 Aligned_cols=181 Identities=10% Similarity=0.055 Sum_probs=86.9
Q ss_pred cCCCEEEEEeCCC------cEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCCc
Q 002471 648 SDGKLLATGGHDK------KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY 714 (918)
Q Consensus 648 pdg~~Latgs~Dg------~V~iwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~Iwdl~~~~~ 714 (918)
.++.+++.||.++ .+..||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556677776542 57778876544322 11111222222222 56777888765 3477888876322
Q ss_pred eeEEecc--CCCCeeEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeeEEee--cCc-eEEEEecCCCEEEEEEc
Q 002471 715 SLRTFMG--HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 715 ~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~ll~~~~ 783 (918)
. .... +...-.+++.. ++.+++.|+.+ ..|.+||+.+.+....-. ... .......++..++.|+.
T Consensus 371 ~--~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 371 R--EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred e--eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc
Confidence 1 1111 11111122222 34566666632 458889988765433211 111 11122234444555543
Q ss_pred C--------CeEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCC
Q 002471 784 E--------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSG 836 (918)
Q Consensus 784 d--------g~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~ 836 (918)
+ ..+.+||..+.+-... +.........+.+ ++++++.|+.+ .|.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2 2388899887654322 1111111112222 56666666643 5777777653
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.46 Score=58.33 Aligned_cols=139 Identities=10% Similarity=0.099 Sum_probs=88.0
Q ss_pred CeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceee-----Eec------cCCCCeEEEEECCCCC-EEEEEeCCCeEE
Q 002471 640 KVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKT-----NLE------EHSSLITDVRFSPSMP-RLATSSFDKTVR 705 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs--~Dg~V~iwd~~~~~~~~-----~l~------~h~~~V~~l~fspdg~-~Lasgs~Dg~V~ 705 (918)
.|..+.+.+|++..++.. .+-.|++||+++..... -|. ....-+.|+.|+|.-. ..+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455566667776655543 33478889987532211 122 2234567888998533 456677799999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-------ecCceEEEEecCCCEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPHLGRY 778 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------~~~~~~v~~sp~~~~l 778 (918)
|..+.-....+..+ .....++|++|+|.|..++ .|...|++.-|...-. ..+.+ ...+.+++|.....++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceee-EecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 99876433333332 3556789999999988776 8888999998876533 22222 1356778887766555
Q ss_pred EEE
Q 002471 779 LAA 781 (918)
Q Consensus 779 l~~ 781 (918)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.11 Score=63.13 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=56.9
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE---ECCCCCEEEEEeCCCeEEEEeC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR---FSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~---fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.-.++|+|++|+.||++++.|-.+|.|.+||+..++.++.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4568999999999999999999999999999999999998887766655544 4445556777766665 5544
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.28 E-value=6.9 Score=44.34 Aligned_cols=187 Identities=10% Similarity=0.009 Sum_probs=97.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCCceeEEeccC--CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce---
Q 002471 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--- 767 (918)
Q Consensus 693 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~--- 767 (918)
..++++..||.|.-.|.++. ..+.....- ...+.+-.+..+|. |+.++.+|.++.+|.++++.+..+.....
T Consensus 69 g~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 35555677888888888773 322211111 12222222333544 44788899999999999988887776551
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCC---CeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcce
Q 002471 768 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK---PIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 768 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~---~V~si~~spdg~~Las~s~--d-~I~iwdl~s~~~~~~ 841 (918)
.-........++..+.++.+...|..+++.+........ .+..--...++ .++.+.. + .+.-+|.+++...-.
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 111122234455555789999999999988777543221 11111111222 3333433 3 566666655532111
Q ss_pred EEE-eccCCCce------EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 842 VHE-LSCNGNKF------HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 842 i~~-~~~~~~~i------~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
.+. .......+ ..-...-+ ..++.++.++.+..+|..+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceE
Confidence 100 00000000 00001111 22466677778888898888877
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.0054 Score=68.11 Aligned_cols=140 Identities=12% Similarity=0.184 Sum_probs=102.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002471 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~ 760 (918)
..-....|-+++..++.++.+-.|..||-.. ..+.. ...++....++|..+++.+++.+-..+.+.+||+.+...-.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAG--QVILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhc--ceecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 3344567788887899999999999998763 22222 23456677799999888888888889999999998653221
Q ss_pred EeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 002471 761 VFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 761 ~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~ 823 (918)
.-.++ ..-+.|++....++.+...+.+.|+...+.+.+.....|...+++++|.+.+..+...
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 11111 1225688888888888889999999998887776666689999999999876544433
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.2 Score=44.32 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=86.7
Q ss_pred CeEEEEEccCCCEEEEEe-CC--CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe-CCCCCce
Q 002471 640 KVICCHFSSDGKLLATGG-HD--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYS 715 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs-~D--g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd-l~~~~~~ 715 (918)
.+.+.++++||..+|... .+ ..|+++... .....+. ....++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 689999999999877665 23 345555433 3222221 223788889999987777766677677774 2222222
Q ss_pred eEEeccC--CCCeeEEEEcCCCCeEEEEE--eCCCcEEEEEcCC---C--e----eeEEe---ecCceEEEEecCCCEEE
Q 002471 716 LRTFMGH--SASVMSLDFHPNKDDLICSC--DGDGEIRYWSINN---G--S----CTRVF---KGGTAQMRFQPHLGRYL 779 (918)
Q Consensus 716 ~~~~~~h--~~~V~sl~fsp~~~~ll~sg--s~Dg~I~iwdl~~---~--~----~~~~~---~~~~~~v~~sp~~~~ll 779 (918)
...+... ...|.++.++|||.++++.. ..++.|.+--+.. + . .+... ...+..+.|..+...++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222211 12899999999999987665 3356777665532 2 0 11111 13456788999887666
Q ss_pred EEEcCC
Q 002471 780 AAAAEN 785 (918)
Q Consensus 780 ~~~~dg 785 (918)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665533
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=5.3 Score=44.57 Aligned_cols=147 Identities=11% Similarity=0.083 Sum_probs=82.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
...+.++.+.+++.+++++. .|.+.. ..+..+.... ....-...++++.+.+++. ++++ +..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCCCCc
Confidence 45789999999887666554 454432 2222222222 2233456789999999865 4434 4467665433444432
Q ss_pred eEEee-------cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 002471 759 TRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSEDSV 828 (918)
Q Consensus 759 ~~~~~-------~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~si~~spdg~~Las~s~d~I 828 (918)
-.... .....+.+.+++ .+++++.+|.|.. ....++.-... ..-...+..+.|..+++.+++|..+.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 22111 123456677754 4666667776553 23333322222 222345788888888888888888877
Q ss_pred EEEE
Q 002471 829 RVWT 832 (918)
Q Consensus 829 ~iwd 832 (918)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6665
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=95.05 E-value=6.8 Score=43.05 Aligned_cols=228 Identities=12% Similarity=0.038 Sum_probs=108.8
Q ss_pred CCCEEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCCc-----------
Q 002471 649 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY----------- 714 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~Iwdl~~~~~----------- 714 (918)
++++|+.|+++|...+. +.. .+..+.+ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 34689999988855544 553 2333333 466899999998777766655 344599999842110
Q ss_pred ---eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEe---e---cCceEEEE-ecC--CCEE
Q 002471 715 ---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVF---K---GGTAQMRF-QPH--LGRY 778 (918)
Q Consensus 715 ---~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~---~---~~~~~v~~-sp~--~~~l 778 (918)
......++...+.-++.......+++++.....|.++.+... ...+.+ . .......+ +.. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122344434334443222223334444566666544322 112211 0 11111222 222 3456
Q ss_pred EEEEcCCeEEEEECCC--ce-----EEEEecCCC-CCeEEEEEcCCCCEEEEEeCCeEEEEECCC-CCCcceEEEeccCC
Q 002471 779 LAAAAENVVSILDAET--QA-----CRLSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGS-GSEGECVHELSCNG 849 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t--~~-----~~~~l~~h~-~~V~si~~spdg~~Las~s~d~I~iwdl~s-~~~~~~i~~~~~~~ 849 (918)
++|+..+...++++.. .. .-....... .++ ++...+++.+|+ +-++...+.|... .......-.+ .
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l~w---~ 243 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLL-CYDEFGVFVNLYGKRRSRNPILHW---E 243 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEE-EECcEEEEEeCCCCccccceEEEc---C
Confidence 6666543344444422 10 000011111 333 333334454544 4444444555542 1111111112 3
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 887 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~ 887 (918)
....++++. ..+|++-+ ++.|.|+++.+++.+...
T Consensus 244 ~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 244 FMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred CcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEE
Confidence 345566666 35666665 556999999999877433
|
Unpublished observations. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.89 Score=51.54 Aligned_cols=105 Identities=10% Similarity=0.016 Sum_probs=61.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEE-ECCCCC----Cc-ceEEEeccC----CCceEEEEEeCCCCEEEEEEcC----
Q 002471 805 TKPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EG-ECVHELSCN----GNKFHSCVFHPTYPSLLVIGCY---- 870 (918)
Q Consensus 805 ~~~V~si~~spdg~~Las~s~d~I~iw-dl~s~~----~~-~~i~~~~~~----~~~i~~i~~sp~g~~l~s~s~d---- 870 (918)
....+.++|.++| +++ ++...|..| |..... .. ..+..+... ......++|.|||.+.++.+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 3456788998888 444 444555544 443211 11 222333322 3446788999999866655521
Q ss_pred ---------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 871 ---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 871 ---------------g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
+.|.-+|..+++...+.........++|+++|.++++-..+
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 34666666665544443334456789999999887764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.4 Score=50.36 Aligned_cols=191 Identities=12% Similarity=0.051 Sum_probs=92.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
.+.+.+|..+|....=+. +.--.|+||++ +|..+.++.-....+..+.|+.+. .|++...||+|+||++.. ..+.
T Consensus 43 ~gGpIAV~r~p~~~~~~~-~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g--e~ie 117 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY-SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG--EFIE 117 (829)
T ss_pred cCCceEEEeccccccccc-ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch--hhhc
Confidence 444555555553211111 33346888876 455555554444478899999654 677778899999999974 2222
Q ss_pred E----eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec------CceEEEEecCC-C-EEEEEEc-C
Q 002471 718 T----FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------GTAQMRFQPHL-G-RYLAAAA-E 784 (918)
Q Consensus 718 ~----~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------~~~~v~~sp~~-~-~ll~~~~-d 784 (918)
. +......|..+.|..+| ++ .-..+|.|.+.+-......+.++. ...+-...+.+ . .++..-. .
T Consensus 118 ~~svg~e~~~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 118 SNSVGFESQMSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA 194 (829)
T ss_pred ccccccccccCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechh
Confidence 2 12223345555555443 22 233355555544332222333322 11111111111 1 1111100 0
Q ss_pred CeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002471 785 NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 836 (918)
Q Consensus 785 g~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 836 (918)
-...++-.++. .....+......+..+..+|++++|+-..+. .|.+-++...
T Consensus 195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 00011111111 1111122223567788899999988887776 7777766543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.63 Score=52.43 Aligned_cols=189 Identities=15% Similarity=0.202 Sum_probs=109.8
Q ss_pred cEEEEcCCCeeeccCCCeeEeCC---CcchhhhcccccccCCCcCceeeeeccCCC-------CCCCCCCcccccccCcc
Q 002471 558 LMMFGTDGAGTLTSPSNQLWDDK---DLELRADMDRLVEDGSLDDNVESFLSHDDT-------DPRDAGGRGMDVSQGFS 627 (918)
Q Consensus 558 ~~~fs~dg~~~~~~~~~~lwd~~---~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~-------~~~~~~~~~~d~~~~~s 627 (918)
.+-|-.+..|+.-++.+.++-.. ..++.+.+..+..+|+..-......-++.. +........+|+..+
T Consensus 423 ~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErG-- 500 (776)
T COG5167 423 VVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERG-- 500 (776)
T ss_pred EEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccc--
Confidence 34444666677777777775432 356666776666665443333222222221 111122234555544
Q ss_pred ceeeeeeecCCCCeEEEEEccCCC-------EEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECC----CCCEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGK-------LLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP----SMPRL 695 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~-------~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fsp----dg~~L 695 (918)
+.+..+..|.+. -|.|.|+.+ --++|-.+..|.-.|.. .+..+.. ......++.-.|+. ...+|
T Consensus 501 -kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~esKdY~tKn~Fss~~tTesGyI 576 (776)
T COG5167 501 -KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-VESKDYKTKNKFSSGMTTESGYI 576 (776)
T ss_pred -eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-eeehhccccccccccccccCceE
Confidence 455556666654 567777543 12344456566555644 3322222 12233334344443 34599
Q ss_pred EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002471 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (918)
Q Consensus 696 asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~ 755 (918)
|+||..|.||+||.-. ......+.+....|..|....+|+++||+| ...|.+.|++-
T Consensus 577 a~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 577 AAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred EEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence 9999999999999764 333445667778899999999999999888 57788888753
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.21 Score=61.14 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=92.6
Q ss_pred CeEEEEECCCCCEEEEE--eCCCeEEEEeCCCCCce----eE------EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEE
Q 002471 682 LITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LR------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasg--s~Dg~V~Iwdl~~~~~~----~~------~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 749 (918)
.|..+...+|+...++. +.+-.|.+||+++-... .+ +.......+.++.|.|.=...++.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555666676655444 34557899999752111 11 11122345667889887555566788899999
Q ss_pred EEEcCCCee-eE--EeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC---C-CCCeEEEEEcCCCCEEEE
Q 002471 750 YWSINNGSC-TR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---H-TKPIDSVCWDPSGELLAS 822 (918)
Q Consensus 750 iwdl~~~~~-~~--~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~---h-~~~V~si~~spdg~~Las 822 (918)
+..+..... +. .+....++++|+|.|..++++-..|++.-|...-. .+..+.+ . ...|.+|+|.....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 988764322 12 23346789999999999999999999988865432 2222221 1 367999999988887776
Q ss_pred Ee
Q 002471 823 VS 824 (918)
Q Consensus 823 ~s 824 (918)
.+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=94.82 E-value=11 Score=44.28 Aligned_cols=172 Identities=8% Similarity=-0.007 Sum_probs=81.3
Q ss_pred CeEEEEEeCC-------CcEEEEEcCCCeeeEEee-c--C---ceEE-EEecCCCEEEEEEcC-----CeEEEEECCCce
Q 002471 736 DDLICSCDGD-------GEIRYWSINNGSCTRVFK-G--G---TAQM-RFQPHLGRYLAAAAE-----NVVSILDAETQA 796 (918)
Q Consensus 736 ~~ll~sgs~D-------g~I~iwdl~~~~~~~~~~-~--~---~~~v-~~sp~~~~ll~~~~d-----g~I~i~D~~t~~ 796 (918)
+.+++.|+.+ ..+.+||+++.+-...-. + . .... .....+..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666643 347788887765432110 0 0 0111 122233444555543 468889988765
Q ss_pred EEEEecC----CCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEec--cCCCceEEEEEeCCCCEE
Q 002471 797 CRLSLQG----HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 797 ~~~~l~~----h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~sp~g~~l 864 (918)
-...-.. ....-.+++. -++++++.|+.+ .+.+||+.+.. ...+.... .....-..++. -+++.+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~~~~~~-~~gkiy 332 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGGAGLEV-VQGKVW 332 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCCcEEEE-ECCcEE
Confidence 4332111 1111122222 245666666542 46778876541 11111000 00011112222 256667
Q ss_pred EEEEcC----CeEEEEECCCCcEEEEccc-----CCCeEEEEEeCCCCEEEEEecC
Q 002471 865 LVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 865 ~s~s~d----g~I~vwd~~~~~~~~~~~h-----~~~V~~la~spdg~~Lasgs~D 911 (918)
++++.+ ..|.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 777655 4689999998876644322 1112222 23356677777753
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.80 E-value=3 Score=46.53 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=42.9
Q ss_pred EEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCcceEEE-eccCCCceEEEEEeCCCCEEEEEE
Q 002471 798 RLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHE-LSCNGNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 798 ~~~l~~h~~~V~si~~sp-------dg~~Las~s~d-~I~iwdl~s~~~~~~i~~-~~~~~~~i~~i~~sp~g~~l~s~s 868 (918)
+..+..| ..+..+.|-. .|.+|++.-.. .|...++........... +......+..+++.|||.++++..
T Consensus 246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 246 VFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred ceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence 3344433 4566666653 34466655555 777777754422222222 233444789999999998777777
Q ss_pred cCCeEE
Q 002471 869 CYQSLE 874 (918)
Q Consensus 869 ~dg~I~ 874 (918)
.+|.|+
T Consensus 325 ~~G~iy 330 (331)
T PF07995_consen 325 SDGKIY 330 (331)
T ss_dssp TTTTEE
T ss_pred CCCeEe
Confidence 777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.017 Score=68.41 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=77.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE-----------ECCCCCEEEEEeCCCeEEEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~-----------fspdg~~Lasgs~Dg~V~Iw 707 (918)
..|..|-|-++.-++..+-.+++|++..+++... ..|++|...+++++ .+|||+.|++++.||.|+.|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 3445555555667888888899999887765432 55666877777665 58899999999999999998
Q ss_pred eCCCCC----ceeEEeccCC-CCeeEEEEcCC-------C--CeEEEEEeCCCcEEEEEcCCCeee
Q 002471 708 DADNPG----YSLRTFMGHS-ASVMSLDFHPN-------K--DDLICSCDGDGEIRYWSINNGSCT 759 (918)
Q Consensus 708 dl~~~~----~~~~~~~~h~-~~V~sl~fsp~-------~--~~ll~sgs~Dg~I~iwdl~~~~~~ 759 (918)
-+.-.+ .|+..++.|+ .+-.|.-|+.. + ..+|-+...+..+++|.....+|.
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 765322 3344555565 23222223321 1 123333444677999988877776
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=94.72 E-value=12 Score=44.33 Aligned_cols=244 Identities=15% Similarity=0.147 Sum_probs=118.9
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCc---eeeEeccC-CCCeEEEEECCCC-CEEEEEeC--CCeEEEEeCCCCCceeEEe
Q 002471 647 SSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEH-SSLITDVRFSPSM-PRLATSSF--DKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 647 spdg~~Latgs~Dg~V~iwd~~~~~---~~~~l~~h-~~~V~~l~fspdg-~~Lasgs~--Dg~V~Iwdl~~~~~~~~~~ 719 (918)
..++..++.+..+|.++...+.... .+..+ +. ....+++.+..++ .+|+.||. |+.+.-|.... -..+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~-l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN-LEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESES-EEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC-cEEEEec
Confidence 4567789999999999988776433 12222 22 4556677776554 47777877 44444454322 2223333
Q ss_pred ccCCCCeeEEEEcCC---CC-------eEEEEEe--CCCcEEEEEcCCCe---eeEEeec-CceEEEEecCC---CEEEE
Q 002471 720 MGHSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGS---CTRVFKG-GTAQMRFQPHL---GRYLA 780 (918)
Q Consensus 720 ~~h~~~V~sl~fsp~---~~-------~ll~sgs--~Dg~I~iwdl~~~~---~~~~~~~-~~~~v~~sp~~---~~ll~ 780 (918)
. .-++|.++++... +. .++++++ .+|.++++.-.-+- ....... ++..+-..+.. ..+++
T Consensus 297 ~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 297 P-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp -----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred c-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 3 4578888888532 12 4554443 46788887432111 1111111 12222222221 33444
Q ss_pred EEcCCeEEEEECC---CceEEEEec--CC---CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEecc-CCCc
Q 002471 781 AAAENVVSILDAE---TQACRLSLQ--GH---TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNK 851 (918)
Q Consensus 781 ~~~dg~I~i~D~~---t~~~~~~l~--~h---~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~-~~~~ 851 (918)
.+....-+++.+. ..+.+..+. +. ...+.+..+. +..++=.....|++.+.... .....+.. ....
T Consensus 376 ~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 376 LSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSI 450 (504)
T ss_dssp EEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS--
T ss_pred EEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCe
Confidence 4444444444442 333332221 11 2223333333 56777777778899987654 33333322 2334
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-----ccCCCeEEEEEeC
Q 002471 852 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST 900 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~-----~h~~~V~~la~sp 900 (918)
|.++++ ++.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 451 I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 444444 3467888888899999988877765 211 2567888888766
|
... |
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.67 E-value=6.4 Score=40.90 Aligned_cols=191 Identities=18% Similarity=0.203 Sum_probs=104.8
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC--CCCC--EEEEEeC--CCeEEEEeCCCCCc
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS--PSMP--RLATSSF--DKTVRVWDADNPGY 714 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs--pdg~--~Lasgs~--Dg~V~Iwdl~~~~~ 714 (918)
|+--.-+|+...+++....+-++|||+. ++.+..+....-.-.++.+- -.|. .|+.+|. ...|.+|.++....
T Consensus 58 IwVh~t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~ 136 (364)
T COG4247 58 IWVHATNPDKSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQ 136 (364)
T ss_pred eEeccCCcCcceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCcc
Confidence 4444456777888888889999999986 44455544322222222221 1333 2455543 45788898876444
Q ss_pred eeEEeccC-------CCCeeEEEEc--CC-CCeEEEEEeCCCcEEEEEcCC-------CeeeEEeecCc--eEEEEecCC
Q 002471 715 SLRTFMGH-------SASVMSLDFH--PN-KDDLICSCDGDGEIRYWSINN-------GSCTRVFKGGT--AQMRFQPHL 775 (918)
Q Consensus 715 ~~~~~~~h-------~~~V~sl~fs--p~-~~~ll~sgs~Dg~I~iwdl~~-------~~~~~~~~~~~--~~v~~sp~~ 775 (918)
.+..+... ...++.++.. +. +..+++....+|.|+-|.+.. .+.++.|+... ..+......
T Consensus 137 ~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEt 216 (364)
T COG4247 137 YLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDET 216 (364)
T ss_pred ceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeecccc
Confidence 44444432 2345566664 33 566777788899998887653 24555555432 223333334
Q ss_pred CEEEEEEcCCeEEEEECC-------CceEEEEecCC---CCCe--EEEEEcCCCC-EEEEEeCC--eEEEEECC
Q 002471 776 GRYLAAAAENVVSILDAE-------TQACRLSLQGH---TKPI--DSVCWDPSGE-LLASVSED--SVRVWTVG 834 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~-------t~~~~~~l~~h---~~~V--~si~~spdg~-~Las~s~d--~I~iwdl~ 834 (918)
+.++.+-.| +.||..+ +++.+.++.+. ...| ..|-+-|+|+ ||+..+.+ +..+|..+
T Consensus 217 G~LYIaeEd--vaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGnNtya~y~Re 288 (364)
T COG4247 217 GFLYIAEED--VAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGNNTYAAYTRE 288 (364)
T ss_pred ceEEEeecc--ceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCCceEEEEEee
Confidence 555555444 4455432 23344333321 1222 2456778887 66666655 55566543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.9 Score=46.42 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=49.2
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeee---EEe---ecCce-EEEEecCCCEEEEEEc-----CCeEEEEECCCceEE
Q 002471 736 DDLICSCDGD-----GEIRYWSINNGSCT---RVF---KGGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR 798 (918)
Q Consensus 736 ~~ll~sgs~D-----g~I~iwdl~~~~~~---~~~---~~~~~-~v~~sp~~~~ll~~~~-----dg~I~i~D~~t~~~~ 798 (918)
+.+++.|+.+ ..+..||+.+.+.. ..+ ..... ......++..++.++. ...+.+||+.+.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566667654 35677777765531 111 11111 1122233445555553 246888998876433
Q ss_pred E--EecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCC
Q 002471 799 L--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG 836 (918)
Q Consensus 799 ~--~l~~h~~~V~si~~spdg~~Las~s~d-----~I~iwdl~s~ 836 (918)
. .+... ......+..-++++++.|+.+ .+.+||..+.
T Consensus 153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 12111 112222223356777777654 3567888764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.11 Score=39.71 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=29.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 671 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~ 671 (918)
...|.+++|+|...+||.|..||.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.47 E-value=6.9 Score=42.64 Aligned_cols=185 Identities=12% Similarity=0.124 Sum_probs=100.6
Q ss_pred eEEEEeCCCCCceeEEecc------CCCCeeEEEEcCCC-----CeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEE
Q 002471 703 TVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 771 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~------h~~~V~sl~fsp~~-----~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~ 771 (918)
.|.+||+.+ ...++.+.- ....+..+.+.... ....++=...+.|.|+|+.+++..+...... ..
T Consensus 35 KLv~~Dl~t-~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~---~~ 110 (287)
T PF03022_consen 35 KLVAFDLKT-NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSF---SP 110 (287)
T ss_dssp EEEEEETTT-TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGC---TT
T ss_pred EEEEEECCC-CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCc---ce
Confidence 577778877 445554432 24557777776532 2334454555789999999998877765411 11
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcC---CCCEEEEEeCCeEEEEECCCC-----CC-----
Q 002471 772 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP---SGELLASVSEDSVRVWTVGSG-----SE----- 838 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp---dg~~Las~s~d~I~iwdl~s~-----~~----- 838 (918)
.|+...+.. +|... ... ..+..++.+| ++++|+-......++|.+.+. ..
T Consensus 111 ~p~~~~~~i---~g~~~-----------~~~---dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~ 173 (287)
T PF03022_consen 111 DPDAGPFTI---GGESF-----------QWP---DGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQA 173 (287)
T ss_dssp S-SSEEEEE---TTEEE-----------EET---TSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-
T ss_pred eccccceec---cCceE-----------ecC---CCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcccccccc
Confidence 111111111 11111 111 2277778766 777887776654455554321 11
Q ss_pred -cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----cE-EEEc-cc-CCCeEEEEEeC--CCCEEEEE
Q 002471 839 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----KT-MTLT-AH-EGLIAALAVST--ETGYVASA 908 (918)
Q Consensus 839 -~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~----~~-~~~~-~h-~~~V~~la~sp--dg~~Lasg 908 (918)
...+..+-........++++++|..+++--..+.|..|+..+. .. +... .. -..+..+.+.+ +|.+.+.+
T Consensus 174 ~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 174 LASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 1122232222345667889999988888888899999999872 22 2222 22 35778899988 77665554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.91 Score=54.09 Aligned_cols=125 Identities=12% Similarity=0.155 Sum_probs=84.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECC--CCCEEEEEeCCCe
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKT 703 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~ 703 (918)
.|....+++.....+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.. ++..+++.|....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 556667777777777777777766665565556689999998776444333 4578899999964 8889999999999
Q ss_pred EEEEeCC-----CCC---ceeEE--eccCC-CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002471 704 VRVWDAD-----NPG---YSLRT--FMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (918)
Q Consensus 704 V~Iwdl~-----~~~---~~~~~--~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 754 (918)
|.+|.-. +.+ ..++. +..|+ .+|.+.+|.++|. +++++ ++.+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 9998542 111 12222 22333 6799999999875 33233 4678888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.83 E-value=4.5 Score=48.18 Aligned_cols=175 Identities=12% Similarity=0.220 Sum_probs=88.6
Q ss_pred CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE------EeecCceEEEEecCC
Q 002471 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------VFKGGTAQMRFQPHL 775 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~------~~~~~~~~v~~sp~~ 775 (918)
-.|+||++. +..+..+.-....+..+.|+.+. .|| +...||++++|++-...... .....+..+.+.. +
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~ 138 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-N 138 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEec-C
Confidence 458888876 45554444444478889999774 455 67789999999986432221 1111222333333 2
Q ss_pred CEEEEEEcCCeEEEEECCCceEEEEecC-CCCCeEEEEEc--CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeccC
Q 002471 776 GRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWD--PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~~~V~si~~s--pdg~---~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
+ +++-..+|.|.+..-.....++++.. ......+.||. +++. .++-...- ...++-..... .....+...
T Consensus 139 G-Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--~q~~~~~~~ 215 (829)
T KOG2280|consen 139 G-VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--VQLHALSWP 215 (829)
T ss_pred c-eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--ccccccCCC
Confidence 3 34444445544443322222222222 11111112222 2211 11111100 11122221111 112222222
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
...+..|..+|+.++|+.-..+|.|.+-+++..+++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 466888999999999999999999999888766554
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.82 E-value=11 Score=41.98 Aligned_cols=141 Identities=12% Similarity=0.219 Sum_probs=79.2
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCc------EEEEEcCCC----eeeE-----Eee-----------cCceEEEEecCCCE
Q 002471 724 ASVMSLDFHPNKDDLICSCDGDGE------IRYWSINNG----SCTR-----VFK-----------GGTAQMRFQPHLGR 777 (918)
Q Consensus 724 ~~V~sl~fsp~~~~ll~sgs~Dg~------I~iwdl~~~----~~~~-----~~~-----------~~~~~v~~sp~~~~ 777 (918)
+.+..|.+.+++..++ +.+++|. ++.+++... ..+. .+. .....+++.+++..
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4466777776555544 4555666 555555431 0000 010 13345777555555
Q ss_pred EEEEEcC------CeEEEEECCCceEEEEec---------------CCCCCeEEEEEcCCCCEEEEEeCC--------e-
Q 002471 778 YLAAAAE------NVVSILDAETQACRLSLQ---------------GHTKPIDSVCWDPSGELLASVSED--------S- 827 (918)
Q Consensus 778 ll~~~~d------g~I~i~D~~t~~~~~~l~---------------~h~~~V~si~~spdg~~Las~s~d--------~- 827 (918)
+++.-.+ ..|+.++.. ++.+..+. .....+.+++++|+|+.|+++.+. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5554456 688888876 54443331 133468899999999966555322 1
Q ss_pred ------EEEEECCCCC----CcceEEEecc-----CCCceEEEEEeCCCCEEEE
Q 002471 828 ------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPTYPSLLV 866 (918)
Q Consensus 828 ------I~iwdl~s~~----~~~~i~~~~~-----~~~~i~~i~~sp~g~~l~s 866 (918)
++|+.+.... .....+.+.. ....+..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5555554322 1222333332 4677899999999986654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.80 E-value=1.4 Score=52.64 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECC---
Q 002471 806 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--HPTYPSLLVIGCYQSLELWNMS--- 879 (918)
Q Consensus 806 ~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~--sp~g~~l~s~s~dg~I~vwd~~--- 879 (918)
....-+.-+.-++..++-+.. .+.|||.+.+. .+....+ .....|.++.| .|++..+++.|..+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344455555555555554444 99999998763 2222222 34677888887 5689999999999999998531
Q ss_pred --CC-------cEEEEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 880 --EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 880 --~~-------~~~~~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.. +.+.+..|+ .+|.+.+|.++|.+++.++ +.+.|++
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 122344555 6899999999997665543 3466654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.75 E-value=3 Score=48.08 Aligned_cols=267 Identities=15% Similarity=0.056 Sum_probs=124.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
..+|.++.|.-.| .|.+|+.|| +..||..+++.+..-.... ..|..+..+-.+ .|.+|+++| |.+.+.+.....-
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 4568888888887 556666665 5667777777665544433 556666555444 577777777 7777766411111
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceE-EE-EecCCCEEEEEEcCCeEEEEEC
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQ-MR-FQPHLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~-v~-~sp~~~~ll~~~~dg~I~i~D~ 792 (918)
.-..-....|..+.-...|... .|+..|..+.---+.+-.....+ ..... .. +....+.+.++..++.+++-+.
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~lW--iGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a 317 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGELW--IGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTA 317 (671)
T ss_pred cCCCCcchheeeeecccCCCEE--EeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecc
Confidence 1111123344444444444322 45555544332222221111111 11111 11 2223456666776666666543
Q ss_pred CCceEEEEecCCCC-CeEEEEEcC---CCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE
Q 002471 793 ETQACRLSLQGHTK-PIDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 793 ~t~~~~~~l~~h~~-~V~si~~sp---dg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s 868 (918)
. ......+...++ .+-.++..| +.......+.+.+.+-+-.++.....++.+. ...|+.+++..++ .+..++
T Consensus 318 ~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R--g~nit~~~~d~~g-~lWlgs 393 (671)
T COG3292 318 D-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR--GMNITTTLEDSRG-RLWLGS 393 (671)
T ss_pred h-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc--ccccchhhhccCC-cEEEEe
Confidence 2 111111111111 011111111 0000000011111122222222112222222 3445666666644 467777
Q ss_pred cCCeEEEEECCC-CcEEEEc--ccCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002471 869 CYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVK 915 (918)
Q Consensus 869 ~dg~I~vwd~~~-~~~~~~~--~h~~~V~~la~spdg~~Lasgs~Dg~I~ 915 (918)
..+-+..|+..+ +...... -..+.|..|.=.|+++ |..|+.+|.++
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 776677777766 3333221 2356788888888888 66777788765
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.5 Score=49.66 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=93.4
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC-------eEEEEEeCCCcEEEEEcCCCe-ee--
Q 002471 691 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINNGS-CT-- 759 (918)
Q Consensus 691 dg~~La-sgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~-------~ll~sgs~Dg~I~iwdl~~~~-~~-- 759 (918)
+..+|+ .|+....++-.|++. ++.+..+.-|... -+.|.|..+ .-| .|-.+..|.-.|.+-.. .+
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444444 344455677778876 7777777777665 366666522 123 45557777777766432 12
Q ss_pred EEeecCceEEEEe----cCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002471 760 RVFKGGTAQMRFQ----PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 834 (918)
Q Consensus 760 ~~~~~~~~~v~~s----p~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~ 834 (918)
..++.-.+.-.|+ ...+++++++..|.|++||.-.......+.+....|..|..+.+|++|++.|...+.+.|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2222222222232 34589999999999999997666555566777788999999999999999998888888875
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=4.8 Score=45.15 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=87.3
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCC--CceeeEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC---ceeE
Q 002471 644 CHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLR 717 (918)
Q Consensus 644 l~fspdg~~Latgs~Dg~V~iwd~~~--~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~---~~~~ 717 (918)
+-|. |.+.++.+...|.+.=|-+.. ....-.+ ....++|.+|.|++|.+.||+--.|++|.+++..... ....
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 3343 333333334455565565542 1222222 2356699999999999999999999999999984321 1122
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC----CeeeEEeecCceEEEEecCCCEEEEEEc--CCeEEEEE
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSILD 791 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~----~~~~~~~~~~~~~v~~sp~~~~ll~~~~--dg~I~i~D 791 (918)
..+..+..|..++|....+ +. ... +..|-+|-+.. -+.+++.+..+....|.++...++.++. .+++.-+-
T Consensus 107 ~ck~k~~~IlGF~W~~s~e-~A-~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSSTE-IA-FIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred HhccCcceeEEEEEecCee-EE-EEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 3333455688899986633 32 222 34456665433 2345566677788888888777665554 34444444
Q ss_pred CCCc
Q 002471 792 AETQ 795 (918)
Q Consensus 792 ~~t~ 795 (918)
++++
T Consensus 184 ~~~~ 187 (657)
T KOG2377|consen 184 FRAG 187 (657)
T ss_pred Eeec
Confidence 4443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.4 Score=51.85 Aligned_cols=177 Identities=7% Similarity=-0.033 Sum_probs=82.5
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEeCCCCCceeEEe
Q 002471 649 DGKLLATGGHDK-----KAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 649 dg~~Latgs~Dg-----~V~iwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~Iwdl~~~~~~~~~~ 719 (918)
++.++++||.++ ++..||..+.+- +..+.........+. -++...+.|+.+ ..+..||..+... ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence 345667776543 566788765432 222222111222222 367777777764 4578888765221 111
Q ss_pred ccCCCCee--EEEEcCCCCeEEEEEeCCC---cEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002471 720 MGHSASVM--SLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 720 ~~h~~~V~--sl~fsp~~~~ll~sgs~Dg---~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~ 792 (918)
..-..+.. +++.. ++.+.+.|+.++ .+..||.++.+-...- ...........-++.+++.+ |.+.+||.
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp 422 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCE 422 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecC
Confidence 11111111 12222 355666777553 4778888776543321 11111111112234444443 45778888
Q ss_pred CCceEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 002471 793 ETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 835 (918)
Q Consensus 793 ~t~~~~~--~l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s 835 (918)
++.+-.. .+....... +++. -++++.++|+.+ .|.+||..+
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 7664332 221111222 2222 256777766642 455666554
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=93.60 E-value=7.4 Score=43.59 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=23.1
Q ss_pred eEEEEECCCCcEEEEcccCCC-eEEEEEeCCCCEEEEEecCC
Q 002471 872 SLELWNMSENKTMTLTAHEGL-IAALAVSTETGYVASASHDK 912 (918)
Q Consensus 872 ~I~vwd~~~~~~~~~~~h~~~-V~~la~spdg~~Lasgs~Dg 912 (918)
.+.+||..+.+...+...... -.+.+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 577888887664433222222 12233445777888887653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.24 Score=37.78 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=93.30 E-value=22 Score=42.78 Aligned_cols=152 Identities=13% Similarity=0.174 Sum_probs=78.3
Q ss_pred eecCceEEEEecCCCEEEEEEcCCeEEEEECCCce--EEEEecC-CCCCeEEEEEcC-----C-CCEEEEEeC---C--e
Q 002471 762 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQG-HTKPIDSVCWDP-----S-GELLASVSE---D--S 827 (918)
Q Consensus 762 ~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~-h~~~V~si~~sp-----d-g~~Las~s~---d--~ 827 (918)
++..+..+.+..++..+++....|.|.+||...+. .+..+.. +...|.--+|-+ + ..++++.+. + .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 45667778899999999999999999999993322 1112221 221111112222 2 234444333 2 7
Q ss_pred EEEEECCCCCCcceEEEec---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEc---ccC-CCeEEEE
Q 002471 828 VRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---AHE-GLIAALA 897 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~~~---~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~---~~~---~h~-~~V~~la 897 (918)
.+++.+... ...+.++. .+......+.|.-....|+.- .++.|.+|++...+.. .+. ... ..+.++.
T Consensus 208 ykL~~l~~~--~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNE--SSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccC--CcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 888988221 12222222 222223333333333334444 7789999999887655 222 111 2344444
Q ss_pred EeCCCCEEEEEecCCcEEEeC
Q 002471 898 VSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 898 ~spdg~~Lasgs~Dg~I~IWd 918 (918)
--...+.|++ .+..|++.|
T Consensus 285 ~~s~nRvLLs--~~nkIyLld 303 (670)
T PF10395_consen 285 PPSPNRVLLS--VNNKIYLLD 303 (670)
T ss_pred cCCCCeEEEE--cCCEEEEEe
Confidence 3223344444 355677654
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.13 E-value=8.8 Score=45.09 Aligned_cols=148 Identities=6% Similarity=-0.059 Sum_probs=72.6
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEEeec-----Cce-EEEEecCCCEEEEEEcC-----CeEEEEECCCceEE
Q 002471 735 KDDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GTA-QMRFQPHLGRYLAAAAE-----NVVSILDAETQACR 798 (918)
Q Consensus 735 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~-----~~~-~v~~sp~~~~ll~~~~d-----g~I~i~D~~t~~~~ 798 (918)
++.+++.|+.+ ..+.+||+.+.+....... ... ......++..++.++.+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 35566677655 4588899887654432111 111 11122334445555543 35778888776433
Q ss_pred EEec-----CCCCCeEEEEEcCCCCEEEEEeC-----CeEEEEECCCCCCcceEEEec--cCCCceEEEEEeCCCCEEEE
Q 002471 799 LSLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLV 866 (918)
Q Consensus 799 ~~l~-----~h~~~V~si~~spdg~~Las~s~-----d~I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~sp~g~~l~s 866 (918)
..-. ..... ..++. -++++++.++. +.|.+||+.+.. ...+.... .......++ ..-+++.++.
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~ 383 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFAS-AAVGKHIVIF 383 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEE-EEECCEEEEE
Confidence 2110 01111 12222 24666666553 258899987642 22222110 001112222 2335566667
Q ss_pred EEcC--------------CeEEEEECCCCcEEEE
Q 002471 867 IGCY--------------QSLELWNMSENKTMTL 886 (918)
Q Consensus 867 ~s~d--------------g~I~vwd~~~~~~~~~ 886 (918)
|+.+ ..+.+||..+.+...+
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 7643 2588999988776543
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=12 Score=42.46 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=9.4
Q ss_pred cEEEEEcCCCeee
Q 002471 747 EIRYWSINNGSCT 759 (918)
Q Consensus 747 ~I~iwdl~~~~~~ 759 (918)
.|.+||..+.+-.
T Consensus 190 ~v~~YD~~t~~W~ 202 (376)
T PRK14131 190 EVLSYDPSTNQWK 202 (376)
T ss_pred eEEEEECCCCeee
Confidence 5888998876543
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=8.1 Score=43.91 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=20.1
Q ss_pred EEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEecC
Q 002471 873 LELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHD 911 (918)
Q Consensus 873 I~vwd~~~~~~~~~~~h~~-~V~~la~spdg~~Lasgs~D 911 (918)
+.+||..+++...+..-.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 5678888776542221111 11222344467777777753
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.65 E-value=4 Score=41.77 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=76.1
Q ss_pred CEEEEEEcCCeEEEEECCC--ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEE---ECCC-CCCcce-
Q 002471 776 GRYLAAAAENVVSILDAET--QACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVW---TVGS-GSEGEC- 841 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t--~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-------~I~iw---dl~s-~~~~~~- 841 (918)
+.++++...+.|.+|++.. ...+.+|.. -+.|..+.++..|+||++--.+ .+|+| +... .....+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 5566667788899999883 345555553 4788899999999999987543 34554 3221 111111
Q ss_pred --------------------EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-------EEE----ccc-
Q 002471 842 --------------------VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-------MTL----TAH- 889 (918)
Q Consensus 842 --------------------i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~-------~~~----~~h- 889 (918)
+-++.. .....+++..|-...|++|+. +.+.||.+..... +.+ ..|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 111111 334566666665555666554 5677776644332 111 112
Q ss_pred CC-CeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 890 EG-LIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 890 ~~-~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.+ .+..++|. +.|||..+ |-.++|+
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vl 211 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVL 211 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEE
Confidence 22 24455554 34787766 4456665
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=92.65 E-value=27 Score=41.43 Aligned_cols=224 Identities=15% Similarity=0.165 Sum_probs=106.8
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCc-eeEEeccC-CCCeeEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeEEee-
Q 002471 689 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK- 763 (918)
Q Consensus 689 spdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h-~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~~~~- 763 (918)
..++..++.+..+|.+....+...+. ......+. .....++++..++..+++.|+. |+.+..|....-+++..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 45677899999999999888875332 12222233 5566788888776345556665 5556666644445555554
Q ss_pred -cCceEEEEecC----CC------EEEEEEc---CCeEEEEECCCceE--EEEecCC--CCCeEEEEEcC-CCCEEEEEe
Q 002471 764 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS 824 (918)
Q Consensus 764 -~~~~~v~~sp~----~~------~ll~~~~---dg~I~i~D~~t~~~--~~~l~~h--~~~V~si~~sp-dg~~Las~s 824 (918)
+++..+++... .. .+++++. +|.++++.-.-+-. ....... -..++.+.... ++.+|+...
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 35555555422 12 6666654 67888874321111 1111111 22344444322 255888777
Q ss_pred CCeEEEEECCCCCCcceEEE-----eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-E-cccCCCeEEEE
Q 002471 825 EDSVRVWTVGSGSEGECVHE-----LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-L-TAHEGLIAALA 897 (918)
Q Consensus 825 ~d~I~iwdl~s~~~~~~i~~-----~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~-~-~~h~~~V~~la 897 (918)
.+.-+|+.+..++....+.. +......+.+..+. +..++=.. ...|++.+...++... + ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 77555666642111122211 11112222222222 33333333 3468888887777663 2 23344455555
Q ss_pred EeCCCCEEEEEecCCcEEEe
Q 002471 898 VSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 898 ~spdg~~Lasgs~Dg~I~IW 917 (918)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 3355555556666554
|
... |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=92.51 E-value=6.2 Score=45.61 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECC-------CCceeeEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-------~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
....+..|...|..+++ .|..++||+.. ++.....+ .++...+.+ .+++....|.|+.|+--
T Consensus 27 ~~~~~gi~~e~g~Aw~~--~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~--------v~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 27 SPCSMGIFPEIGRAWIV--VDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPG--------VGLVKPKTGRVVFWESI 96 (422)
T ss_dssp TS-EEEEE-TTSEEEEE--ETTEEEEEE--SS--GG--EEEEE-----------S--------EEEEE-TT-EEEEES-T
T ss_pred cceEEEEEcccCEEEEE--ECCEEEEEeccCCCCCcCcccccceecCCCCCCCce--------EEEEEcCCCCEEecccc
Confidence 34555556555544444 37899999984 23333333 333333333 24555668899999754
Q ss_pred C
Q 002471 711 N 711 (918)
Q Consensus 711 ~ 711 (918)
.
T Consensus 97 ~ 97 (422)
T PF08801_consen 97 S 97 (422)
T ss_dssp T
T ss_pred h
Confidence 3
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=92.40 E-value=7.6 Score=43.43 Aligned_cols=40 Identities=3% Similarity=0.006 Sum_probs=21.7
Q ss_pred CeEEEEECCCCcEEEEccc----CCCeEEEEEeCCCCEEEEEec
Q 002471 871 QSLELWNMSENKTMTLTAH----EGLIAALAVSTETGYVASASH 910 (918)
Q Consensus 871 g~I~vwd~~~~~~~~~~~h----~~~V~~la~spdg~~Lasgs~ 910 (918)
+.|.+||..+.+-..+... .......+...++++++.|+.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 4688999988876644321 111111122335667777774
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.33 E-value=4.4 Score=38.19 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=74.2
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCC-------ceeEEeccCCCCeeEEEEcC----CCCeEEEEEeCCCcEEEEE
Q 002471 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPG-------YSLRTFMGHSASVMSLDFHP----NKDDLICSCDGDGEIRYWS 752 (918)
Q Consensus 684 ~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-------~~~~~~~~h~~~V~sl~fsp----~~~~ll~sgs~Dg~I~iwd 752 (918)
..-+|......|++++.-|.|.|++..... ..++.+ .....|++|+--+ ++..+|+.|+ ...|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344666666788999999999999876422 123333 3566788886544 2344665555 67899999
Q ss_pred cCCCeee--EEeecCceEEEEec---CCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002471 753 INNGSCT--RVFKGGTAQMRFQP---HLGRYLAAAAENVVSILDAETQACRLSL 801 (918)
Q Consensus 753 l~~~~~~--~~~~~~~~~v~~sp---~~~~ll~~~~dg~I~i~D~~t~~~~~~l 801 (918)
+....-+ +.+..++.++.+-. ....++..+.+..|.-||.+-.+..++.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9876543 34556666665432 2345666677777777777666655544
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.33 E-value=4.9 Score=40.65 Aligned_cols=169 Identities=13% Similarity=0.133 Sum_probs=90.7
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCCceeEEeccCCCC
Q 002471 649 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS 725 (918)
Q Consensus 649 dg~~Latgs~--Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~ 725 (918)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++..- =.||.-.++|.++ -+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 4566666654 3479999999888776654321111111111113333332 3378888888886 34444433 3344
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----c----CceEEEEecCCCEEEEE-EcCCeEEEEECCCce
Q 002471 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G----GTAQMRFQPHLGRYLAA-AAENVVSILDAETQA 796 (918)
Q Consensus 726 V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~----~~~~v~~sp~~~~ll~~-~~dg~I~i~D~~t~~ 796 (918)
=+.++. ++.+++ .++...+++.-|.++.....+.. + ....+.|. .+.+++- -.+..|...|..+|+
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCc
Confidence 555654 455566 55556677777776654333321 1 11122222 2333333 235566677777777
Q ss_pred EEEEec------------CCCCCeEEEEEcCCCCEEEEEe
Q 002471 797 CRLSLQ------------GHTKPIDSVCWDPSGELLASVS 824 (918)
Q Consensus 797 ~~~~l~------------~h~~~V~si~~spdg~~Las~s 824 (918)
.+..+. .+....+.|++.|++..|+..+
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 665542 2445678899999885444433
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.20 E-value=3.3 Score=52.76 Aligned_cols=227 Identities=11% Similarity=0.020 Sum_probs=107.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
.....++|++.-.++|.+..+|.|++|-..-.+.+.....-. -.+..+.|-.....+.....+..+.+|.....+.+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-- 113 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV-- 113 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence 356678899999999999999999999754333222221111 01222222222223333344555666655432111
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----ecCceEE-EEecCCCEEEEEEcCCeEEEEEC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQM-RFQPHLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v-~~sp~~~~ll~~~~dg~I~i~D~ 792 (918)
-+...+++....+- -.++.+ ..+.+++||+.-....... ....... .+.+..-.+..--.+-.-.++-+
T Consensus 114 ---~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 114 ---FLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred ---ecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 12223333332221 112244 7888888887543211111 1111000 11110000000000000011111
Q ss_pred CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCe
Q 002471 793 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 872 (918)
Q Consensus 793 ~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~ 872 (918)
.... ..+..+..++.+..+......+..+....+.+|+...... .+.+. +....+..++..++++..||.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYV---QSAYL-----PNGQLESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccc---hhhcc-----cccccCccCCceEEEEEecCC
Confidence 1001 1222345556666666566666666666666776543311 11111 111122778999999999999
Q ss_pred EEEEECCCCcE
Q 002471 873 LELWNMSENKT 883 (918)
Q Consensus 873 I~vwd~~~~~~ 883 (918)
+.+||+..++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999998754
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=26 Score=40.06 Aligned_cols=108 Identities=13% Similarity=-0.004 Sum_probs=59.3
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCce-----EEEEecC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 002471 765 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 837 (918)
Q Consensus 765 ~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~-----~~~~l~~--h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~ 837 (918)
....+.+.+++..+++ +..|.+..- ...++ ....+.. ....+..+.|.+++..+++|..+.+.+. ...++
T Consensus 282 ~l~~v~~~~dg~l~l~-g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 282 RIQNMGWRADGGLWLL-TRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK 358 (398)
T ss_pred ceeeeeEcCCCCEEEE-eCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence 3456677766655554 455655443 22222 1222211 1235889999998888888777644443 33343
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 3333322222245677888877655 5666677766554
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.06 E-value=13 Score=42.48 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=49.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--------CCce---eEEec--------cCCCCeeEEEEcCCC--CeEE
Q 002471 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADN--------PGYS---LRTFM--------GHSASVMSLDFHPNK--DDLI 739 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--------~~~~---~~~~~--------~h~~~V~sl~fsp~~--~~ll 739 (918)
-.|..|..++.|..++.++.+|.+.++=.+. .++. .+++. ...-.+.-++|+|+. +..+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 3477888999999999999999655442110 1211 11111 112235567888875 4344
Q ss_pred EEEeCCCcEEEEEcCCCeeeEE
Q 002471 740 CSCDGDGEIRYWSINNGSCTRV 761 (918)
Q Consensus 740 ~sgs~Dg~I~iwdl~~~~~~~~ 761 (918)
..-..|.+||+||+...+.+..
T Consensus 184 ~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEEecCcEEEEEecCCcchhhc
Confidence 4566689999999877655533
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.022 Score=63.42 Aligned_cols=141 Identities=20% Similarity=0.293 Sum_probs=94.9
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEE
Q 002471 767 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHE 844 (918)
Q Consensus 767 ~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~ 844 (918)
....|.+.+..+++++.+..|..||-...... ... .......++|+.++..++...+. .+.+||+.+.........
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34567777777888888888888886543222 111 33455678899888855554443 899999976422111111
Q ss_pred eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-cCCCeEEEEEeCCCCEEEEEecCCc
Q 002471 845 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF 913 (918)
Q Consensus 845 ~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~-h~~~V~~la~spdg~~Lasgs~Dg~ 913 (918)
+ ...-.-+.|++.+..++.+...+.+.||+..+.+.+...+ |...+++++|.+.+ +++.++.|..
T Consensus 116 --g-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 116 --G-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred --C-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 1 1111125799999999999999999999999888775555 99999999999887 4555555543
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=91.98 E-value=4.3 Score=48.46 Aligned_cols=163 Identities=16% Similarity=0.147 Sum_probs=92.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeeEecc-CCC------CeEEEEECCCCCEEEEEeC-C---CeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEE-HSS------LITDVRFSPSMPRLATSSF-D---KTV 704 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~~l~~-h~~------~V~~l~fspdg~~Lasgs~-D---g~V 704 (918)
.+.|..|.|..+++.+++.-.+|.|.+||...+ +.+..+.. +.. -|.....-....++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 678999999999999999999999999999322 22112221 222 2222221122345544444 2 246
Q ss_pred EEEeCCCCCceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC-------ceEEEEecC
Q 002471 705 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQPH 774 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~~~v~~sp~ 774 (918)
+++.+......+..+. .+........|+-..+.+..- .+++|.+|++...+..+++.-. ...+.+.+-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7788732222232222 122222333333333434322 6889999999887766665422 233455554
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEec
Q 002471 775 LGRYLAAAAENVVSILDAETQACRLSLQ 802 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 802 (918)
...-+.-+.++.|+++|+.-...+.++.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 4444555677899999987655555444
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.97 E-value=33 Score=40.93 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=104.1
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc----EEEEE
Q 002471 682 LITDVRFSPSMPRLATSSF-----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----IRYWS 752 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~----I~iwd 752 (918)
.+-.++.+||.+++|-+-+ .=+++|-|+.++......+. +...+++|..|+..++++...++. |....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3556778899988876633 34689999988554444333 345678999999999888776652 33333
Q ss_pred cCC--CeeeEEeecC--c--eEEEEecCCCEEEEEEc---CCeEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEE
Q 002471 753 INN--GSCTRVFKGG--T--AQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLA 821 (918)
Q Consensus 753 l~~--~~~~~~~~~~--~--~~v~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~La 821 (918)
+.+ ..-...+... . ..+.-+....+++.... ...+++++......... .....+--..+ ...+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~--eh~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSV--EHGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEee--eecCcEEE
Confidence 333 1111222221 1 22223344455555543 34677777765432211 11111111111 12244333
Q ss_pred EEeCC---eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEE
Q 002471 822 SVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTM 884 (918)
Q Consensus 822 s~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~ 884 (918)
.-+.+ ..+|+.............+..|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 33322 455555433111122334444555555555666667777776654 7888888876654
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=5.9 Score=46.68 Aligned_cols=167 Identities=8% Similarity=-0.103 Sum_probs=79.0
Q ss_pred CeEEEEEeCCC-----cEEEEEcCCCeeeEEe--ecCc-eEEEEecCCCEEEEEEcC--CeEEEEECCCceEEE--EecC
Q 002471 736 DDLICSCDGDG-----EIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAE--NVVSILDAETQACRL--SLQG 803 (918)
Q Consensus 736 ~~ll~sgs~Dg-----~I~iwdl~~~~~~~~~--~~~~-~~v~~sp~~~~ll~~~~d--g~I~i~D~~t~~~~~--~l~~ 803 (918)
+.+++.|+.++ .+..||..+.+....- .... .......++..+++|+.+ ..+..||..+.+-.. .+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 45666676542 5777888876543322 1111 111123344455555543 468888877654322 1211
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 804 HTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 804 h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
..... +++ .-+|++.+.|+.+ .+..||.++. ....+..+...... .+ +..-++...++| |.+.+||..
T Consensus 352 ~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~-~~-~~~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 352 PRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYK-SC-ALVFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCcccc-ce-EEEECCEEEEEC---CceEEecCC
Confidence 11111 222 2357777776643 4778887654 11111111111111 12 222345444444 357889998
Q ss_pred CCcEEEEcccC--CCeEEEEEeCCCCEEEEEecC
Q 002471 880 ENKTMTLTAHE--GLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 880 ~~~~~~~~~h~--~~V~~la~spdg~~Lasgs~D 911 (918)
+++...+..-. ..-.+++ .-++++.+.||.+
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFY 456 (480)
T ss_pred CCcEeEcCCCCCCccccEEE-EECCEEEEECCcC
Confidence 87765433211 1111222 2466777777754
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.8 Score=44.25 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=75.6
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCC-cceEEE--eccCCCceEEEEEeC
Q 002471 787 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE-GECVHE--LSCNGNKFHSCVFHP 859 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~-~~~i~~--~~~~~~~i~~i~~sp 859 (918)
-.+||+.+++..-........+.+-.+.+||++|.+|+.. .+++|+...... ...... .-.......++..-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578888876543322233344445678999999998863 688988654111 111110 012234455666778
Q ss_pred CCCEEEEEEcCC-eEEEEECCC--CcEEEE--cc------cCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002471 860 TYPSLLVIGCYQ-SLELWNMSE--NKTMTL--TA------HEGLIAALAVSTETGYVASASHDKFVK 915 (918)
Q Consensus 860 ~g~~l~s~s~dg-~I~vwd~~~--~~~~~~--~~------h~~~V~~la~spdg~~Lasgs~Dg~I~ 915 (918)
||+.|++|+.+. ...+|.-.. .....+ .. ....--.+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999999886 566776532 222211 11 111222455679999999988776554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.86 E-value=3.7 Score=49.59 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=48.0
Q ss_pred CCCeEEEEEc--CCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC------CEEEEEEcCCeEEE
Q 002471 805 TKPIDSVCWD--PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY------PSLLVIGCYQSLEL 875 (918)
Q Consensus 805 ~~~V~si~~s--pdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g------~~l~s~s~dg~I~v 875 (918)
...+++++++ ...++||+++.. .|.||-+...........-..+...|.+|.|-++. .+|++++-.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 3478889988 677788888877 77776554321111111111256678888886644 26778888898888
Q ss_pred EEC
Q 002471 876 WNM 878 (918)
Q Consensus 876 wd~ 878 (918)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 777
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=91.72 E-value=9.2 Score=42.37 Aligned_cols=106 Identities=9% Similarity=0.054 Sum_probs=51.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCce---eeEec---cCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCC
Q 002471 649 DGKLLATGGHD-----KKAVLWHTDTLKS---KTNLE---EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 712 (918)
Q Consensus 649 dg~~Latgs~D-----g~V~iwd~~~~~~---~~~l~---~h~~~V~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~~ 712 (918)
++.+++.|+.+ ..|..||+.+.+- ...+. .......++.+ ++++.+.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55677777754 3566777765442 12221 11111112222 5666677764 245888888763
Q ss_pred CceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCee
Q 002471 713 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSC 758 (918)
Q Consensus 713 ~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg----~I~iwdl~~~~~ 758 (918)
..... .+... ......+..- ++.+++.|+.++ .+.+||+++.+.
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCee
Confidence 32211 11111 1111111112 345666777654 356888887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=91.54 E-value=34 Score=40.24 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=61.2
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCC---eeEEEEcCCCCeEEEEEe-------C-----CCcEEE
Q 002471 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS---VMSLDFHPNKDDLICSCD-------G-----DGEIRY 750 (918)
Q Consensus 686 l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~---V~sl~fsp~~~~ll~sgs-------~-----Dg~I~i 750 (918)
+.+.++|.+++... ..++.+|+. ++.+..+...... =.++.+.|+|+.|+++.. . +..|..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC--CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence 66778888877665 778888886 3444433321111 234677788776664441 0 123555
Q ss_pred EEcCCCeeeEEee------------------------------cCceEEEEecCCCEEEEEEcC-CeEEEEECCCceEEE
Q 002471 751 WSINNGSCTRVFK------------------------------GGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRL 799 (918)
Q Consensus 751 wdl~~~~~~~~~~------------------------------~~~~~v~~sp~~~~ll~~~~d-g~I~i~D~~t~~~~~ 799 (918)
+| .+|+.+..+. .|..++.+.+.++.+++++.. ..|..+|.++++...
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 55 5555443321 145678888977888888875 489999999998888
Q ss_pred EecCC
Q 002471 800 SLQGH 804 (918)
Q Consensus 800 ~l~~h 804 (918)
.+..+
T Consensus 308 ilg~~ 312 (477)
T PF05935_consen 308 ILGPP 312 (477)
T ss_dssp EES-S
T ss_pred EeCCC
Confidence 77654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.36 E-value=2.1 Score=53.96 Aligned_cols=160 Identities=17% Similarity=0.278 Sum_probs=87.1
Q ss_pred CCCcEEEEECCCCceeeEeccCCCCeEEEEE--------CCCCCEEEEEeCCCeEEEEeCCCCCc--eeEEec------c
Q 002471 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--------SPSMPRLATSSFDKTVRVWDADNPGY--SLRTFM------G 721 (918)
Q Consensus 658 ~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~f--------spdg~~Lasgs~Dg~V~Iwdl~~~~~--~~~~~~------~ 721 (918)
.|+.+.+|+.+++.....+.+-+..|..|.. .|.=++|++.+.--.|.|+-+.-... ....+. .
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 5889999999998888888888888887764 33334555555555577775532111 111111 2
Q ss_pred CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002471 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 801 (918)
Q Consensus 722 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 801 (918)
....|.||....+|+ +| -++.|| .+|.+--...-.-|......++.+ .+.-..+. .. +..+
T Consensus 177 dg~~V~~I~~t~nGR-IF-~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt--------~s~ls~lv------Ps-~~~~ 237 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGR-IF-FAGRDG--NLYELVYQAEDGWFGSRCRKICLT--------KSVLSSLV------PS-LLSV 237 (1311)
T ss_pred CCceEEEEEeccCCc-EE-EeecCC--CEEEEEEeccCchhhcccccccCc--------hhHHHHhh------hh-hhcC
Confidence 245688888666654 55 345566 444432110000000000000000 00000000 00 1112
Q ss_pred -cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002471 802 -QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 836 (918)
Q Consensus 802 -~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 836 (918)
..+.++|..+..+....++.+-++. +|.+||+...
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 2467789999998888888888877 8999999763
|
|
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.44 Score=55.33 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=54.3
Q ss_pred ccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCcee-----eEeccC-----CCCeEEEEECCCCCE
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSK-----TNLEEH-----SSLITDVRFSPSMPR 694 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg-~V~iwd~~~~~~~-----~~l~~h-----~~~V~~l~fspdg~~ 694 (918)
.++..+..++.|..+|..++|.+.|.+|++++..| .|.++.+....+. ..+..| ...|-.++|+....+
T Consensus 303 ~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~ 382 (788)
T KOG2109|consen 303 DSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTI 382 (788)
T ss_pred cchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcce
Confidence 36777888999999999999999999999998765 4666654321111 111111 234556788888888
Q ss_pred EEEEeCCCe
Q 002471 695 LATSSFDKT 703 (918)
Q Consensus 695 Lasgs~Dg~ 703 (918)
++.++.+|+
T Consensus 383 r~~gsc~Ge 391 (788)
T KOG2109|consen 383 RTAGSCEGE 391 (788)
T ss_pred EeecccCCC
Confidence 888887764
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.16 E-value=31 Score=42.11 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=41.5
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCe--EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEE
Q 002471 676 LEEHSSLITDVRFSPSMPRLATSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (918)
Q Consensus 676 l~~h~~~V~~l~fspdg~~Lasgs~Dg~--V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 740 (918)
...+...+..+.|+|++..++..+.++. ..+|-+...+ .+..+...|..+.|++++..+++
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence 4456778899999999999988874332 4555444322 33345566777888888877664
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=90.97 E-value=17 Score=45.99 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=13.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC
Q 002471 804 HTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 804 h~~~V~si~~spdg~~Las~s~ 825 (918)
|-..+.++|.+|||.++++-..
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~g 681 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSG 681 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCC
Confidence 4455667777777775554433
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.91 E-value=9.9 Score=47.05 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=32.9
Q ss_pred CCeEEEEeCCCCCceeEEecc--CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002471 701 DKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 763 (918)
+|.++.|++...+..+..+.. -.+.| .+.+|..++++ ++....+++||+...+.++..+
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~L--agvG~~l~~YdlG~K~lLRk~e 971 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVL--AGVGRFLRLYDLGKKKLLRKCE 971 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEE--EecccEEEEeeCChHHHHhhhh
Confidence 455777776554554433332 22333 34455556555 3345788888888776665543
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=90.79 E-value=31 Score=38.48 Aligned_cols=61 Identities=7% Similarity=-0.003 Sum_probs=29.8
Q ss_pred CCCEEEEEeCC-CcEEEEECCC----CceeeEecc-CCCCeEEEEECCCCCEEEEEeCC-----------CeEEEEeCCC
Q 002471 649 DGKLLATGGHD-KKAVLWHTDT----LKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-----------KTVRVWDADN 711 (918)
Q Consensus 649 dg~~Latgs~D-g~V~iwd~~~----~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D-----------g~V~Iwdl~~ 711 (918)
++++.++|+.. ..+.++|++. ...+..+.. .......+. -++++.+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~--~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA--IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE--ECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 45555555543 4567777632 222222221 111122222 256677777753 2477788775
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=90.75 E-value=3.9 Score=48.18 Aligned_cols=176 Identities=15% Similarity=0.173 Sum_probs=94.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 718 (918)
..+++|.-+|.|..++.+..||.|++|++...+..+... ...+-..+.|...| |+++..|..+.-|.-+ +..-..
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d--gvvqqq 89 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED--GVVQQQ 89 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc--Ccchhh
Confidence 357788888999999999999999999986544322221 12233345555433 6677778888888654 222222
Q ss_pred ec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC--CeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 719 FM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 719 ~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~--~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
|. .......++...|...+++ |.--|.|.-+|.-- +-....|. ++-..-..|.+-|+.
T Consensus 90 fdyndqsekefss~~cdptaqnvv--gtlcggv~q~dcclrr~i~knkfe---------------~tyv~pshvilkdls 152 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVV--GTLCGGVEQFDCCLRRGILKNKFE---------------LTYVAPSHVILKDLS 152 (1636)
T ss_pred ccccchhhhhccceecCchhhhhh--hhhccceeeehHHHHhHHHhccce---------------eEEeccceeeeeccc
Confidence 21 1122344455555544433 44445565555311 11111111 111112344555555
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 836 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~ 836 (918)
++.....+....-.|..+.+--..+|++.-...+|.|=|+++.
T Consensus 153 n~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~ 195 (1636)
T KOG3616|consen 153 NDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESN 195 (1636)
T ss_pred CCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccc
Confidence 5544433332233455555555566777666668888888764
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.72 E-value=38 Score=39.30 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=40.7
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eeEec-----cCCCCeEEEEECCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM 692 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~--~~~l~-----~h~~~V~~l~fspdg 692 (918)
+-..-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344566789999999998777765579999998654432 22121 125678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG2006 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.54 E-value=2.2 Score=52.35 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=52.9
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCC--CceeeEe---ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNL---EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~--~~~~~~l---~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
-.|+........+++|..-|.+.+|+... +..+... .++...+..+.|.|+.+.++.+-.-|...+|....
T Consensus 151 Avc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g 226 (1023)
T KOG2006|consen 151 AVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQG 226 (1023)
T ss_pred ceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccc
Confidence 45566667788999999999999998762 3222222 23444788889999999999998888899997754
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.45 E-value=33 Score=38.13 Aligned_cols=142 Identities=17% Similarity=0.233 Sum_probs=83.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe------EEEEeCCCCC---cee-----EEeccCCC--------CeeEEEEcCCCCe
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKT------VRVWDADNPG---YSL-----RTFMGHSA--------SVMSLDFHPNKDD 737 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~------V~Iwdl~~~~---~~~-----~~~~~h~~--------~V~sl~fsp~~~~ 737 (918)
-+.+..|.+.+++..+++.+++|. +..+++.... ..+ ..+....+ ..-+|++.+++ .
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-S 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-C
Confidence 355778888876667777777777 5555554310 011 11111111 34478885554 4
Q ss_pred EEEEEeCC------CcEEEEEcCCCeeeEEe------------------ecCceEEEEecCCCEEEEEEc-----CC---
Q 002471 738 LICSCDGD------GEIRYWSINNGSCTRVF------------------KGGTAQMRFQPHLGRYLAAAA-----EN--- 785 (918)
Q Consensus 738 ll~sgs~D------g~I~iwdl~~~~~~~~~------------------~~~~~~v~~sp~~~~ll~~~~-----dg--- 785 (918)
++++.-.+ ..|+.++.. ++....+ ..+...+++++++..++++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 55466556 678888876 5544333 123466899999997777654 22
Q ss_pred --------eEEEEECCC-c----eEEEEecC-----CCCCeEEEEEcCCCCEEEEE
Q 002471 786 --------VVSILDAET-Q----ACRLSLQG-----HTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 786 --------~I~i~D~~t-~----~~~~~l~~-----h~~~V~si~~spdg~~Las~ 823 (918)
.|..||..+ + ...+.+.. ....|..+.+.+++++|+.-
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 244456654 2 22333332 35678899999999977753
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=90.44 E-value=55 Score=41.85 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=41.1
Q ss_pred ceeeeeeecCCCCeEEEEEcc--CCC-EE----EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC---CC-CCEEE
Q 002471 628 FKEANSVRASTSKVICCHFSS--DGK-LL----ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS---PS-MPRLA 696 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fsp--dg~-~L----atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs---pd-g~~La 696 (918)
........||...|.|..+.- ++. +| ++.+-||.+.|=|..- ++.+.......+-+.+. +. .-+||
T Consensus 337 vitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy---IRRI~~dg~v~tIl~L~~t~~sh~Yy~A 413 (1899)
T KOG4659|consen 337 VITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY---IRRISQDGQVSTILTLGLTDTSHSYYIA 413 (1899)
T ss_pred eEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh---eeeecCCCceEEEEEecCCCccceeEEE
Confidence 334444568888888877653 222 22 2455789998877542 22222111111112222 11 12455
Q ss_pred EEeCCCeEEEEeCCC
Q 002471 697 TSSFDKTVRVWDADN 711 (918)
Q Consensus 697 sgs~Dg~V~Iwdl~~ 711 (918)
..-.||++.|=|..+
T Consensus 414 vsPvdgtlyvSdp~s 428 (1899)
T KOG4659|consen 414 VSPVDGTLYVSDPLS 428 (1899)
T ss_pred ecCcCceEEecCCCc
Confidence 555677776666554
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.31 E-value=2.9 Score=47.55 Aligned_cols=9 Identities=22% Similarity=0.911 Sum_probs=6.2
Q ss_pred eEEEEeCCC
Q 002471 703 TVRVWDADN 711 (918)
Q Consensus 703 ~V~Iwdl~~ 711 (918)
.+..||-+.
T Consensus 62 ~lf~Wd~~d 70 (741)
T KOG4460|consen 62 ELFLWDGED 70 (741)
T ss_pred EEEEEecCc
Confidence 677777664
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.19 E-value=3 Score=50.33 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=74.9
Q ss_pred eEEEEEcc--CCCEEEEEeCCCcEEEEECCC-------C-------------ceeeEeccCCCCeEEEEEC--CCCCEEE
Q 002471 641 VICCHFSS--DGKLLATGGHDKKAVLWHTDT-------L-------------KSKTNLEEHSSLITDVRFS--PSMPRLA 696 (918)
Q Consensus 641 V~~l~fsp--dg~~Latgs~Dg~V~iwd~~~-------~-------------~~~~~l~~h~~~V~~l~fs--pdg~~La 696 (918)
|+-|.... +..+|+.|..||.|.+|.+++ . ++...+. ....++.|+++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444433 446899999999999997631 0 0112222 34478999998 7788889
Q ss_pred EEeCCCeEEEEeCCCC--CceeEEeccCCCCeeEEEEcCCC--C---eEEEEEeCCCcEEEEEc
Q 002471 697 TSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNK--D---DLICSCDGDGEIRYWSI 753 (918)
Q Consensus 697 sgs~Dg~V~Iwdl~~~--~~~~~~~~~h~~~V~sl~fsp~~--~---~ll~sgs~Dg~I~iwdl 753 (918)
+++....|.||-.... ......-..|...|-+|+|.++. . ..|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888865431 11111122366789999998764 2 26778889999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=90.18 E-value=33 Score=37.69 Aligned_cols=195 Identities=10% Similarity=0.035 Sum_probs=90.0
Q ss_pred CCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCce---------------eeEeccCCCCeEEEEECCCC-CEEEEEe
Q 002471 637 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS---------------KTNLEEHSSLITDVRFSPSM-PRLATSS 699 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs-~Dg~V~iwd~~~~~~---------------~~~l~~h~~~V~~l~fspdg-~~Lasgs 699 (918)
+...|+++...+.-+.|++-+ ....|+++++..... ....-.|......+.+.... ..++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 455899999998777766654 333499999853221 01111343333333333222 2344555
Q ss_pred CCCeEEEEeCCCCCceeEEec-------cCCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCC--CeeeE-----Eeec
Q 002471 700 FDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN--GSCTR-----VFKG 764 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~~~~~~~~~-------~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~--~~~~~-----~~~~ 764 (918)
...+|.++...........++ .-..++..+..+++. ...++.|+..+...++++.. ..... ....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 566777765543211111111 112233333333321 22444555433444455432 11000 0011
Q ss_pred ---CceEEEEecCCCEEEEEEcCCeEEEEECCC-ce-EEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002471 765 ---GTAQMRFQPHLGRYLAAAAENVVSILDAET-QA-CRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 836 (918)
Q Consensus 765 ---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t-~~-~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~ 836 (918)
...++...++ +.++.+-.+. ..+.|... .. ....+. -.....++++. ..+|++...+.|.|+++.++
T Consensus 201 ~~~~p~~i~~l~~-~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~ 272 (302)
T smart00036 201 TSLKPISVVQVPR-DEFLLCYDEF-GVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTG 272 (302)
T ss_pred cccCceEEEEECC-CeEEEEECcE-EEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCC
Confidence 1122222222 3444444333 33444432 11 111121 23445667776 46777777779999999887
|
Unpublished observations. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.75 E-value=9.1 Score=36.14 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=69.1
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCc--------eeeEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEe
Q 002471 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 642 ~~l~fspdg~~Latgs~Dg~V~iwd~~~~~--------~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iwd 708 (918)
..-.|......|++++.-|+|.|++..... .+..+ .-...|++|+--+ +...|+.|+ ...|.+||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344566666788899999999999865322 22233 3455677775433 234566666 55699999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCeeeEE
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCTRV 761 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~iwdl~~~~~~~~ 761 (918)
++.... ..++.-.+.|.+|.+-. ....+++.| .+..|.-||.+..+...+
T Consensus 80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cccCch--hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 987332 22334456677777632 123355444 467777777765554433
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=89.33 E-value=69 Score=40.24 Aligned_cols=259 Identities=9% Similarity=0.053 Sum_probs=126.5
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCce---------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---
Q 002471 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKS---------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--- 711 (918)
Q Consensus 644 l~fspdg~~Latgs~Dg~V~iwd~~~~~~---------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--- 711 (918)
-.+-++...+++-+.+|.|+-.++.+... ...++. .+.+..+........|+..+.+|.+.......
T Consensus 490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~ 568 (800)
T TIGR01063 490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE 568 (800)
T ss_pred hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Confidence 34456667888899999998886653321 111222 33455555555566677777778766655432
Q ss_pred C-----Ccee---EEeccCCCCeeEEEEcC-CCCeEEEEEeCCCcEEEEEcCCCeee-------EEeecC--ceEEEEec
Q 002471 712 P-----GYSL---RTFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCT-------RVFKGG--TAQMRFQP 773 (918)
Q Consensus 712 ~-----~~~~---~~~~~h~~~V~sl~fsp-~~~~ll~sgs~Dg~I~iwdl~~~~~~-------~~~~~~--~~~v~~sp 773 (918)
. +..+ ..+.....-|.++.+.. +....++..+.+|.|+..++...... ..++.. ...+....
T Consensus 569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~ 648 (800)
T TIGR01063 569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS 648 (800)
T ss_pred CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC
Confidence 1 1111 11222222344444322 12234557888999999887543211 111111 22222333
Q ss_pred CCCEEEEEEcCCeEEEEECCC---------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------C
Q 002471 774 HLGRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------S 837 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t---------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~------~ 837 (918)
....+++.+..|.+..+.+.. |.....+.. ...|.++....+...++..+.. .++...+... .
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 445677777777666665432 122222222 2334444443444444544444 5665554311 1
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 907 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Las 907 (918)
.......+......+..+....+...++..+.+|.+..++...-.. ...-...|..+....+ ..+++
T Consensus 728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~--~gR~a~GVk~i~L~~~-D~vv~ 794 (800)
T TIGR01063 728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSE--QGRNTQGVRLIRLDED-DKLVS 794 (800)
T ss_pred cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCc--cccCCCCeeeeeeCCC-CEEEE
Confidence 1122223333234444444444445677778888777777653221 1112334566665433 34443
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.2 Score=44.45 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc---------------ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT---------------AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~---------------~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+.+...+.+|++.+.+|.+++||+.+++.+.-. .....|..+.++.+|.-|++-+. |..+.|+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~ 93 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYS 93 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEec
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.09 E-value=2.5 Score=44.06 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=0.0
Q ss_pred eeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe------c--------CCCCCeEEEEEcCCCCEEEE
Q 002471 757 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL------Q--------GHTKPIDSVCWDPSGELLAS 822 (918)
Q Consensus 757 ~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l------~--------~h~~~V~si~~spdg~~Las 822 (918)
..+..+.-+...+.+...+.++++.+.+|.+++||+.+++.+..- - .....|..+.++.+|.-|++
T Consensus 4 rl~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 4 RLLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred cccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE
Q ss_pred EeCCeEEEEECC
Q 002471 823 VSEDSVRVWTVG 834 (918)
Q Consensus 823 ~s~d~I~iwdl~ 834 (918)
-+.+..+.|+..
T Consensus 84 lsng~~y~y~~~ 95 (219)
T PF07569_consen 84 LSNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEeccc
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 918 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-27 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-20 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-20 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-20 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-20 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-20 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 9e-20 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 4e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-19 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-19 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-19 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-19 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-19 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-19 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 7e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-19 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-18 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-17 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-17 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-17 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-17 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 5e-16 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-14 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 5e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 7e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 9e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 9e-14 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-13 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-13 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 9e-08 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-11 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-09 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-11 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-11 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-11 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-11 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-11 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-06 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-10 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-09 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 6e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-09 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 7e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-09 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-09 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-09 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 7e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-09 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 6e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-09 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-08 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 4e-09 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-07 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 4e-09 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-07 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 4e-09 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-07 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-08 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-08 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 5e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 7e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 5e-08 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 7e-08 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-07 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 1e-07 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 3e-07 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 6e-07 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 6e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-06 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-06 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 7e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 3e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 9e-06 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 3e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 6e-05 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 2e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 2e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 9e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 918 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-35 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-33 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-23 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-17 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-20 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-20 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-16 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-18 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-17 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-16 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-16 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-16 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-12 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 3e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 8e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-08 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-06 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 2e-06 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 0.004 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 6e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| g1pnb.1 | 106 | a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) | 5e-04 | |
| d1fxza1 | 239 | b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe | 6e-04 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 0.002 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 0.002 | |
| d2crua1 | 105 | a.5.6.1 (A:8-112) Programmed cell death protein 5 | 0.002 | |
| d1psya_ | 125 | a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricin | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 134 bits (337), Expect = 5e-35
Identities = 59/340 (17%), Positives = 122/340 (35%), Gaps = 11/340 (3%)
Query: 583 ELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVI 642
+LR + ++L + D ++ D V + + ++R +K+
Sbjct: 6 QLRQEAEQLKN--QIRDARKA---CADATLSQITNNIDPVGR-IQMRTRRTLRGHLAKIY 59
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
H+ +D +LL + D K ++W + T + SS + ++PS +A D
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119
Query: 703 TVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759
+++ + R GH+ + F + + S D + + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 760 RVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 818
G R + + + D CR + GH I+++C+ P+G
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 819 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878
A+ S+D+ + + S F + LL + +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 879 -SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
++ L H+ ++ L V+ + VA+ S D F+K+W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.4 bits (181), Expect = 9e-15
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
+ FS G+LL G D +W L H + ++ + + +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 699 SFDKTVRVWD 708
S+D +++W+
Sbjct: 331 SWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (179), Expect = 2e-14
Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 43/221 (19%)
Query: 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717
D LW +T + T H+ + + +P + + D + ++WD G +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ 220
Query: 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 777
TF GH + + ++ F PN + + D R + +
Sbjct: 221 TFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQEL------------------ 261
Query: 778 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 836
S I SV + SG LL + +D + VW
Sbjct: 262 -------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 837 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 877
+ L+ + N+ ++ L++WN
Sbjct: 303 ---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666
A + ++V C + DG +ATG D +W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 127 bits (319), Expect = 9e-33
Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 30/315 (9%)
Query: 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688
E ++ S V F ++ + D +W +T + L+ H+ + D+ F
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748
S LA+ S D T+++WD RT GH +V S+ PN D I S D I
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECI-RTMHGHDHNVSSVSIMPN-GDHIVSASRDKTI 125
Query: 749 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 805
+ W + G C + F G +R + + + V + T+ C+ L+ H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 806 KPIDSVCW--------------------DPSGELLASVSED-SVRVWTVGSGSEGECVHE 844
++ + W G L S S D ++++W S G C+
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW---DVSTGMCLMT 242
Query: 845 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 903
L + N +FH +L ++L +W+ + M TL AHE + +L
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302
Query: 904 YVASASHDKFVKLWK 918
YV + S D+ VK+W+
Sbjct: 303 YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.0 bits (237), Expect = 4e-22
Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 62/226 (27%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
+ + V + DG L+A+ +D+ +W T + K L EH ++ +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 687 RF--------------------SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV 726
+ P L + S DKT+++WD G L T +GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV 250
Query: 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 786
+ FH I SC D +R W N C +
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLN----------------------- 286
Query: 787 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 831
H + S+ + + + + S D +V+VW
Sbjct: 287 ----------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.8 bits (234), Expect = 1e-21
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 3/164 (1%)
Query: 589 DRLVEDGSLDDNVESFLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 647
L+ S D V ++ + R + ++ + + S + +
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707
G L +G DK +W T L H + + V F + + + DKT+RVW
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751
D N ++T H V SLDFH + + D ++ W
Sbjct: 275 DYKN-KRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.7 bits (187), Expect = 1e-15
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
+ ++ + V F S GK + + DK +W + L H +T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 687 RFSPSMPRLATSSFDKTVRVWD 708
F + P + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 7e-04
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 874 ELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
+ W + L+ H + + + SAS D +K+W
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (280), Expect = 4e-27
Identities = 72/324 (22%), Positives = 115/324 (35%), Gaps = 44/324 (13%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------H 679
TS V C FS+DG+ LATG +K ++ L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 739
I V FSP LAT + D+ +R+WD +N + F +
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 740 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACR 798
S D I S T + G + P G+Y+AA + V + D+ET
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 799 LSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---------GEC 841
L GH + SV + G+ + S S D SV++W + + + G C
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVST 900
+ + S +L + + W+ S N + L H + ++AV+
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360
Query: 901 ------ETGYVASASHDKFVKLWK 918
E A+ S D ++WK
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 4e-17
Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 53/210 (25%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRL 695
DGK +A G D+ +W ++T L+ H + V F+ +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 696 ATSSFDKTVRVWDADNPG-----------YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 744
+ S D++V++W+ N T++GH V+S+ N D+ I S
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSK 328
Query: 745 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 804
D + +W +G+ + +G H ++ A N
Sbjct: 329 DRGVLFWDKKSGNPLLMLQG---------HRNSVISVAVAN------------------- 360
Query: 805 TKPIDSVCWDPSGELLASVSED-SVRVWTV 833
P + A+ S D R+W
Sbjct: 361 -----GSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.6 bits (197), Expect = 1e-16
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----------- 678
E S V F+ DG+ + +G D+ LW+ +K++ +
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 679 -HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--- 734
H + V + + + + S D+ V WD + G L GH SV+S+
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSL 364
Query: 735 --KDDLICSCDGDGEIRYWSI 753
+ ++ + GD + R W
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 5e-10
Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 689 SPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745
S S+P + +++ P L + H++ V + F + + L C+
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT 84
Query: 746 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 805
+ + +++GS +A + +L S
Sbjct: 85 --TQVYRVSDGSLVARLSDDSAANKDPENL---------------------NTSSSPSSD 121
Query: 806 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 865
I SVC+ P G+ LA+ +ED + + + + + + F +
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRL-IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 866 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
G + ++TL+ +G+ + Y+A+ S D+ V++W
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (250), Expect = 1e-23
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 18/295 (6%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
K ++ VI C G + +G D +W T K L H+ +
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Query: 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746
+ ++ + + ++ + + S D
Sbjct: 64 QMRDNII------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 747 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHT 805
+R W I G C V G A +R + GR + + A +V + D ET+ C +LQGHT
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 806 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864
+ S+ +D G + S S D S+RVW V G C+H L+ + + L
Sbjct: 178 NRVYSLQFD--GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--L 230
Query: 865 LVIGCYQSLELWNMSENKTMTLTAHEGL--IAALAVSTETGYVASASHDKFVKLW 917
+ ++++W++ + + A + +V ++S D VKLW
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (202), Expect = 2e-17
Identities = 35/203 (17%), Positives = 76/203 (37%), Gaps = 20/203 (9%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
DG+ + +G +D +W +T L+ H++ + ++F + + S D
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDT 197
Query: 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762
++RVWD + + T GH + ++ N ++ S + D ++ W I G C +
Sbjct: 198 SIRVWDVETG-NCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTL 253
Query: 763 KGGTA----QMRFQPHLGRYLAAAAENVVSILDAETQAC-----RLSLQGHTKPIDSVCW 813
+G Q + + ++ + V + D +T L G + +
Sbjct: 254 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 814 DPSGELLASVSED-----SVRVW 831
+ + A S + + V
Sbjct: 314 SNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 3e-09
Identities = 45/254 (17%), Positives = 81/254 (31%), Gaps = 53/254 (20%)
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 766
W S + GH V++ + I S D ++ WS G C R G T
Sbjct: 1 WRR-GELKSPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 767 AQ-----------------------------------------MRFQPHLGRYLAAAAEN 785
H R ++ + +
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 845
+ + D ET C L GH + +++ + V+VW C+H L
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDP---ETETCLHTL 173
Query: 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIAALAVSTETGY 904
+ N+ +S F + ++ S+ +W++ TLT H+ L + + +
Sbjct: 174 QGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI 229
Query: 905 VASASHDKFVKLWK 918
+ S + D VK+W
Sbjct: 230 LVSGNADSTVKIWD 243
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 9e-09
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATS 698
+ + +L +G D +W T + L+ + + V TS
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 699 SFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLIC-SCDG--DGEIRY 750
S D TV++WD G +R + G V + K S +G + ++
Sbjct: 277 SDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Query: 751 WSIN 754
+
Sbjct: 336 LDFD 339
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 3e-20
Identities = 49/301 (16%), Positives = 101/301 (33%), Gaps = 33/301 (10%)
Query: 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692
R+ TSK + C D + + +G D +W +TL+ K L H+ + +++ +
Sbjct: 9 HCRSETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Query: 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
+ + ++ + ++ +C D I W
Sbjct: 68 I------ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 753 INNGSCTRVFKGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 808
+ + + + + A ++A+ + + + + T +L GH + I
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 809 DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 867
C L+ S S D ++R+W + EC L +V
Sbjct: 182 A--CLQYRDRLVVSGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVS 233
Query: 868 GCYQ-SLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916
G Y +++W++ TL H G + L + S+SHD + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291
Query: 917 W 917
W
Sbjct: 292 W 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 8/204 (3%)
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 775
+ S V L + I S D I+ W N C R+ G T + +
Sbjct: 8 IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 835
R + + + + L+ H +G ++ + S+ VW + S
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIA 894
++ L + + F Y ++ +++++WN S + TL H+ IA
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182
Query: 895 ALAVSTETGYVASASHDKFVKLWK 918
L V S S D ++LW
Sbjct: 183 CLQYRDR--LVVSGSSDNTIRLWD 204
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 7e-07
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSPSM 692
+ D K + +G +D K +W L EHS + ++F
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF- 278
Query: 693 PRLATSSFDKTVRVWD 708
++ +SS D T+ +WD
Sbjct: 279 -QIVSSSHDDTILIWD 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.5 bits (220), Expect = 9e-20
Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 11/288 (3%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSM 692
V S+ + + TGG +W +K+ + + I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRY 750
L T+ +WD P ++ + S A +K C DG+ +
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 751 WSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDS 810
A + G L + + +L T I S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 811 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 870
+ + P+GE LA E S ++L + + S F + G
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLH---VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 871 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918
L W ++ + + + +S + Y+ + S DK +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (195), Expect = 1e-16
Identities = 43/283 (15%), Positives = 87/283 (30%), Gaps = 14/283 (4%)
Query: 645 HFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
H ++DG++ D + L H ++ V S + T
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGC 73
Query: 704 VRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICS----CDGDGEIRYWSINN 755
V+VWD +PG S + + S P+ LI ++ +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 756 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 815
+ + P + ++ +++ D Q QGHT +
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 816 SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 875
G L + D+ + ++ S + PT L V ++E+
Sbjct: 194 DGTKLWTGGLDN---TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 876 WNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918
++++ L HE + +L + + S D + W+
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 1e-12
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
S++ + G+ LA G + H + K L H S + ++F+ ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKWFVST 283
Query: 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D + W G S+ S+SV+S D + D I + GD + + +
Sbjct: 284 GKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.8 bits (213), Expect = 1e-18
Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 21/279 (7%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATS 698
+ C ++ D +A ++ + ++ L+EH+ +T V ++P R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
D+ VW + + + G I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 759 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 818
V K +R ++L + + L + + +
Sbjct: 130 WWVCKHIKKPIRS----------------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173
Query: 819 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878
V E GE + E S + H F + + ++ L +
Sbjct: 174 ---EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Query: 879 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
+ + A E L + +A HD F L+
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.1 bits (185), Expect = 3e-15
Identities = 39/323 (12%), Positives = 98/323 (30%), Gaps = 32/323 (9%)
Query: 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW--HTDTLKSKTNLEEHSS 681
G + + + ++ +V ++ D + T G D+ A +W T K + +
Sbjct: 37 SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96
Query: 682 LITDVRFSPSMPRLATSSFDKTVRVWD--ADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 739
VR++P+ + A S + + + +N + + S + L+
Sbjct: 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156
Query: 740 CSCDGDGEIRYWSINNGSCTRV---------------------FKGGTAQMRFQPHLGRY 778
+ D + R +S G + F + R
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216
Query: 779 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 838
+ ++ V + DA+ + +L T P+ +V + L+A+ + ++T S +
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA- 275
Query: 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 898
+ + + + H+ ++ ++V
Sbjct: 276 --GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333
Query: 899 STETGY----VASASHDKFVKLW 917
+ + D + +W
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
F ++ L+A G HD VL+ D+ K + + R + DK
Sbjct: 248 AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306
Query: 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGS 757
+ G L + H SV + K C+ DG + W + +
Sbjct: 307 KASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 802 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860
+PI W+ +A + V ++ SG++ VHEL + + + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 861 YPSLLVIGCYQSLELWNM 878
++ G ++ +W +
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP----SMPRLATSSFD 701
DKKA H + ++ + + T+ D
Sbjct: 292 QRGLTARERFQNLDKKASSE-GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 702 KTVRVWDADNPGYSLRTF 719
+ +WD + +L+
Sbjct: 351 GGMSIWDVRSLESALKDL 368
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 82.3 bits (201), Expect = 1e-17
Identities = 50/285 (17%), Positives = 92/285 (32%), Gaps = 6/285 (2%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLA 696
+ S+DGK L + + W T S + + H+++IT ++ S L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKGDLF 70
Query: 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
T S+D ++V A G + + S L + D I I +S
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 757 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 816
+ + + + V + + H I SV + +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 817 GELLASVS-EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 875
G L + V ++V + E + + + K + P L S+ +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 876 WNM---SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
WNM S++ + AH + + SA D +K W
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 65.0 bits (156), Expect = 7e-12
Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 8/247 (3%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 734
H+ IT + S L ++ + + WD G S R F H+ + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSK 66
Query: 735 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 794
D + + D ++ L
Sbjct: 67 GD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 795 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHS 854
+ + S + + +V +V + + + S
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 855 CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST----ETGYVASASH 910
F L+ + + ++++ N + T A + +A+ S
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244
Query: 911 DKFVKLW 917
D V +W
Sbjct: 245 DNSVIVW 251
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 39/163 (23%)
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 775
+ GH+ ++ +L + + S D +G I W I+ G RVF
Sbjct: 5 DQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPD----------- 52
Query: 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 835
H I + G+L +D ++V G
Sbjct: 53 ---------------------------VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85
Query: 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878
+ ++ + +
Sbjct: 86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (107), Expect = 9e-06
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSF 700
C +S D LATG D ++W+ + H+ + + + ++
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Query: 701 DKTVRVWD 708
D ++ W+
Sbjct: 289 DSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.003
Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 5/107 (4%)
Query: 731 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 790
D + + + + A + + P R + +N V +
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251
Query: 791 DAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 833
+ + + ++SV W + + S +D +++ W V
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.9 bits (195), Expect = 1e-16
Identities = 35/307 (11%), Positives = 70/307 (22%), Gaps = 29/307 (9%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLAT 697
+ LL D ++ D +L + + F +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+ + S + + A++ DD + + DG I N
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 758 CTRVFKGGT---------AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--- 805
+ + R + + V +
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 806 -KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GECVHELSCNGNK 851
+ D E A S D V V + + +
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253
Query: 852 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 911
+S F P + L G + WN+ K + A + + ++ + A+ D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313
Query: 912 KFVKLWK 918
K
Sbjct: 314 DTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.4 bits (191), Expect = 5e-16
Identities = 33/272 (12%), Positives = 67/272 (24%), Gaps = 30/272 (11%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHP 733
+ I+D++ PS L +S+D ++ V+ D L + + ++ +F
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVV------ 787
N D I GEI + + A +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 788 ----SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECV 842
+ D L+ D + L +S V+ + + +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 843 HELSCNGNKFHSCVFHPTYPSLLVIGCY-----------------QSLELWNMSENKTMT 885
E S + P S +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 886 LTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
T + ++ S ++ +A D + W
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
FS K L T G D W+ T K N + + + V+ + S L ++ D
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDD 314
Query: 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734
T + A + +T +++S+ + + N
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIFDYEN 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 11/169 (6%), Positives = 33/169 (19%), Gaps = 37/169 (21%)
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 775
++ + + P+ L+ DG + + + +
Sbjct: 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQ----------- 51
Query: 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 835
+ P+ + + +L V + V
Sbjct: 52 -------------------------SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86
Query: 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884
+ N + L+ +E+ +
Sbjct: 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.9 bits (195), Expect = 2e-16
Identities = 45/310 (14%), Positives = 93/310 (30%), Gaps = 33/310 (10%)
Query: 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692
++R + VI C + + TG DK ++ + K L H + ++++
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
L + S D+TVRVWD + +S I + D + W
Sbjct: 66 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 753 INNGSCTRVFKGGTAQ------------------------MRFQPHLGRYLAAAAENVVS 788
+ S H ++ + +N +
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184
Query: 789 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 847
+ D C L GHT I S +D + S S D ++R+W + +G + +
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244
Query: 848 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 907
V + + + + H ++A+ + +
Sbjct: 245 LVGLLRLSDKFL------VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298
Query: 908 ASHDKFVKLW 917
+ + ++
Sbjct: 299 SGSENQFNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 9e-09
Identities = 6/72 (8%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC 742
++ + + S + +++ + + + + S++F L+ +
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAV 341
Query: 743 DGDGEIRYWSIN 754
+ DG+ ++
Sbjct: 342 EKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 6e-08
Identities = 18/126 (14%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 798 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856
R +L+GH + + C + + ++D +RV+ + + + +LS + +
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN---KKFLLQLSGHDGGVWALK 60
Query: 857 FHPTYPSLLVIG----CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 912
+ +LV G + ++ + Y+ + S D
Sbjct: 61 YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 913 FVKLWK 918
+ +WK
Sbjct: 119 TLHVWK 124
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 10/250 (4%)
Query: 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693
V S + + G + L ++ + + VR
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171
Query: 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
+ S + L GH+ + S + + I + D IR W +
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DTTIRIWDL 230
Query: 754 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 813
NG +G TA + ++L +AA + R HT +
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 814 DPSGELLASVSEDSVRVWTVGSGSEGECVH-ELSCNGNKFHSCVFHPTYPSLLVIGCYQS 872
S +L S SE+ ++ + S G+ VH + + ++ S F L+
Sbjct: 291 YVSDNILVSGSENQFNIYNLRS---GKLVHANILKDADQIWSVNFKGKT--LVAAVEKDG 345
Query: 873 ---LELWNMS 879
LE+ + S
Sbjct: 346 QSFLEILDFS 355
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 78.8 bits (192), Expect = 3e-16
Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 14/291 (4%)
Query: 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699
+ + G + + +L EHS T + SPS A+
Sbjct: 19 TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 700 FDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
VR+WD + L+T + S V + + + +G + + +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 759 TRVFKGGTA-----QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 813
+ G A R ++ + +N V+I + + + HTK + SV +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 814 DPSGELLASVSEDSVRVWTVGSGSEGECVH-----ELSCNGNKFHSCVFHPTYPSLLVIG 868
+P G L AS D V G V + + + P +
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257
Query: 869 CYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 917
+++++WN++ K T+ + L + + S S + F+
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.4 bits (134), Expect = 6e-09
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFD 701
+S DG +A+ DK +W+ TLK + + + + + + L + S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302
Query: 702 KTVRVWDAD 710
+ + +
Sbjct: 303 GFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 5e-07
Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 18/256 (7%)
Query: 638 TSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695
+ + S G A+G + T KT + S + D+ + R+
Sbjct: 58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
Query: 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
A + + + A M+ D
Sbjct: 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177
Query: 756 G----SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-------QACRLSLQGH 804
S +R+ P + + + + + + + L H
Sbjct: 178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237
Query: 805 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYP 862
+ + + W P G +AS S D ++++W V + + + + T
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 863 SLLVIGCYQSLELWNM 878
+L+ I + N
Sbjct: 295 ALVSISANGFINFVNP 310
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.3 bits (188), Expect = 9e-16
Identities = 34/307 (11%), Positives = 81/307 (26%), Gaps = 27/307 (8%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAV----LWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 693
+ + +A V + SS++T V+FSP
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 694 -RLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDG 744
L + V VW F + + + + + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 745 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQAC 797
D + S ++G+ G + ++ + + A
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 798 RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV--WTVGSGSEGECVHELSCNGNKFHSC 855
+ + V + P ++ + SG + + +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 856 VFHPTYPSLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVS-TETGYVASASHD 911
+ +G ++ +W+++ +K TL + + V T G + S S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 912 KFVKLWK 918
+ ++
Sbjct: 318 GTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGEIRYW 751
+ AT D T+RVWD ++ + + + + I S DG + ++
Sbjct: 265 KFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 752 SI 753
+
Sbjct: 324 EL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 9e-08
Identities = 30/266 (11%), Positives = 65/266 (24%), Gaps = 28/266 (10%)
Query: 638 TSKVICCHFS--SDGKLLATGGHDKKAVLWHTDT--------LKSKTNLEEHSSLITDVR 687
+S V FS + L +G K ++W + K+ + + I+D+
Sbjct: 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Query: 688 FSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745
+ RL D D+ + D
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182
Query: 746 GEIRYWSINNGSC---------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 796
+ Y + + + + E
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242
Query: 797 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF--H 853
Q + + A+V D ++RVW V + +CV + + + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQ 299
Query: 854 SCVFHPTYPSLLVIGCY-QSLELWNM 878
T ++ +L + +
Sbjct: 300 QVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 16/179 (8%)
Query: 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKGGTAQ----MRFQPHL 775
L + P + + C +R + F G + ++F P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 776 -GRYLAAAAEN-VVSILDAETQACRLSL--------QGHTKPIDSVCWDPSGELLASVSE 825
+YL + E+ V + S+ Q PI + WD G L V E
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 826 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884
S G + E+S + + ++C + P + ++
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 74.0 bits (180), Expect = 1e-14
Identities = 20/316 (6%), Positives = 74/316 (23%), Gaps = 45/316 (14%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKT 703
+ + + + + + K+ + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 704 VRVWDADNPGYSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
+ D D + + S+ S P+ ++ + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 759 TRVFKGGTAQMRFQPHLGRY-------------LAAAAENVVSILDAETQACRLSLQGHT 805
VF A + +D +T ++L
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 806 KP------------------------IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 841
+ ++ + + ++ +V +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 901
E + + + + P P+ + L +++ + K + + +A +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK 302
Query: 902 TGYVASASHDKFVKLW 917
+ + ++
Sbjct: 303 GDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.4 bits (111), Expect = 5e-06
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T S G ++ A + K V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 698 SSFDKTVRVWDAD 710
+ V++ D
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 5/130 (3%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSS 699
F D + AT + T K+ T + L SP P
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270
Query: 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759
+ + +D ++ + + F D + ++ ++ +
Sbjct: 271 LN-RLAKYDLKQ-RKLIKAA-NLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 760 RVFKGGTAQM 769
+ K M
Sbjct: 327 KNIKLPGGDM 336
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.1 bits (180), Expect = 1e-14
Identities = 35/316 (11%), Positives = 81/316 (25%), Gaps = 71/316 (22%)
Query: 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-----------PGYSLRT 718
+ + + H + I V + S D ++VWD + ++
Sbjct: 4 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM--------- 769
+ H + +++ + L+ + G++ ++ I T+ +
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121
Query: 770 --------RFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQ 802
L L A + E Q S
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181
Query: 803 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862
++ SV G L+A+ + + S E + + + +
Sbjct: 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240
Query: 863 SLLVIGCYQS---------------------LELWNMSENKTMTLTAHEGLIAALAVSTE 901
+ L + S ++ AH + +L+ +
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300
Query: 902 TGYVASASHDKFVKLW 917
+ SA D ++ W
Sbjct: 301 GETLCSAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 5e-11
Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 44/231 (19%)
Query: 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVL------WHTDTLKSKTNLEEHSSL 682
S + S G L+ATG ++ + +S+ ++ +S+
Sbjct: 175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 683 ITDVRFSPSMPRLATSSFDKTVRVW---------------DADNPGYSLRTFMGHSASVM 727
I V+FSP LA + + + + HS+ VM
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 728 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL------GRYLAA 781
SL F+ + + L + DG++R+W + + + + G LA
Sbjct: 294 SLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 352
Query: 782 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 831
V L K S E L V D S+R +
Sbjct: 353 PGVFDVKFLK--------------KGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 6e-10
Identities = 27/200 (13%), Positives = 49/200 (24%), Gaps = 28/200 (14%)
Query: 665 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 724
+ + + S T V S +AT + TV++ + HS
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227
Query: 725 SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTR-------------------V 761
S + L+ ++
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287
Query: 762 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI----DSVCWDPSG 817
+ F +A + + D +T+ +L H I D + D G
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 818 ELLASVSEDSVRVWTVGSGS 837
+ LA V+ G S
Sbjct: 348 DSLAEPGVFDVKFLKKGWRS 367
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 16/174 (9%)
Query: 589 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648
L+ G + V+ + S + SV+ S +
Sbjct: 195 RGLIATGFNNGTVQISELSTLRPLYN---FESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251
Query: 649 DGKLLATGGHDKKAVLW------HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
++ + T + ++ HSS + + F+ S L ++ +D
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311
Query: 703 TVRVWDADNPGYSLRTFMGHSASV----MSLDFHPNKDDLICSCDGDGEIRYWS 752
+R WD + T H + L + G ++++
Sbjct: 312 KLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDE--HGDSLAEPGVFDVKFLK 362
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 607 HDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666
+ G S + + A +S V+ F+ G+ L + G D K W
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317
Query: 667 TDTLKSKTNLEEHSS----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 722
T + T L H + LA V+D R+ MG
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVKFLKKGWRSGMGA 371
Query: 723 SASVMSLDFHPNKDDLICSCDGDGEIRYW 751
+ ++ +C D IR++
Sbjct: 372 -----------DLNESLCCVCLDRSIRWF 389
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 69.5 bits (168), Expect = 4e-13
Identities = 21/227 (9%), Positives = 46/227 (20%), Gaps = 21/227 (9%)
Query: 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691
S + + G + ++ + K E+S F
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDAD 189
Query: 692 MPRLATSSFDKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745
L S+ D S P
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 746 GEIRYWSI------NNGSCTRVFKGGTAQMRFQPH--LGRYLAAAAEN-VVSILDAETQA 796
++ S + + H Y A E V+ D +T+
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308
Query: 797 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 842
+ + + + + +D + + + + V
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 68.4 bits (165), Expect = 1e-12
Identities = 26/305 (8%), Positives = 62/305 (20%), Gaps = 26/305 (8%)
Query: 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695
++ D K+ G + L D K E + +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP---------NKDDLICSCDGDG 746
A + D+ + G A +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 747 EIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAE-NVVSILDAETQACR------ 798
I + + + + L + ++ D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 799 -LSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-----SGSEGECVHELSCNGNKF 852
+ + P + D ++ + + L + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 853 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 912
V L +++ KT +T + + L +S + V D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDV---KTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 913 FVKLW 917
+ +
Sbjct: 337 KIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.0 bits (159), Expect = 5e-12
Identities = 26/298 (8%), Positives = 57/298 (19%), Gaps = 30/298 (10%)
Query: 646 FS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704
FS DG L+A + + D + I VR +
Sbjct: 10 FSPLDGDLIAFVSRGQ---AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 764
+ D F + +V ++ N + + D +
Sbjct: 67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126
Query: 765 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----------CRLSLQGHTKPIDSVCW 813
F A + + + +
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186
Query: 814 DPSGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTYPSLLVIG 868
D + L +S + + + P G
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR-SMTSEAG 245
Query: 869 CYQSLELWNM---------SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
Y +++ + L + + + Y A + +
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 59.9 bits (143), Expect = 6e-10
Identities = 16/166 (9%), Positives = 36/166 (21%), Gaps = 17/166 (10%)
Query: 604 FLSHDDTDP-RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKA 662
+LS+ DP D + + G +D
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVV---SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 663 VLWHT-------DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715
+ + + LE + + + + +D
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---- 307
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 761
R ++ L + + DG+I + + R
Sbjct: 308 -RKVTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 16/181 (8%), Positives = 41/181 (22%), Gaps = 15/181 (8%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMP 693
F +D K L + L + + P
Sbjct: 181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240
Query: 694 RLATSSFDKT---VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEI 748
+D R + R + +S++ + + G +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 749 RYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHTKP 807
+ + T K +R + + + + E +++ +P
Sbjct: 301 LKYDVKTRKVT-EVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358
Query: 808 I 808
+
Sbjct: 359 L 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 22/250 (8%), Positives = 56/250 (22%), Gaps = 21/250 (8%)
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745
FSP L + D + + + + + +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 746 GE-IRYWSINNGSCTRVFKGGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 802
G+ + + G + + M + + A + +D ET + +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 803 GHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKFHSC 855
I + +A V EG + + + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 856 VFHPTYPSLLVIGCYQSLELWN--------MSENKTMTLTAHEGLIAALAVSTETGYVAS 907
F +L + + +K + G + + +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 908 ASHDKFVKLW 917
+D
Sbjct: 245 GEYDLNDMYK 254
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.0 bits (159), Expect = 5e-12
Identities = 28/305 (9%), Positives = 66/305 (21%), Gaps = 38/305 (12%)
Query: 651 KLLATGGHDKKAVLW--HTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVW 707
+ K V+ + + + +P AT + +++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 708 DADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
D L T S+ P+ L + ++
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 764 GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKP----- 807
T R R + A + ++D E +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 808 -IDSVCWDPSGELLASVSEDSVRVWTVG----SGSEGECVHELSCNGNKFHSCVFHPTYP 862
D + E ++ + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 863 ----------SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 912
G Y LE +++ +N ++ ++ VST+ V
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 913 FVKLW 917
+ +
Sbjct: 302 DLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 19/232 (8%), Positives = 49/232 (21%), Gaps = 28/232 (12%)
Query: 606 SHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW 665
+ ++ ++ DG L G D +
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161
Query: 666 HTDTLKSK---------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704
TL + + +++ +
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221
Query: 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 764
D + ++R S +P K + + + + + +
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPL 278
Query: 765 GTA--QMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCW 813
+ + G + A ++ DAET + + S+
Sbjct: 279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.4 bits (157), Expect = 5e-12
Identities = 29/288 (10%), Positives = 69/288 (23%), Gaps = 56/288 (19%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735
+ H+ IT + +P L + S+D + W + + HS ++SLD +
Sbjct: 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ 58
Query: 736 ----------------------------------DDLICSCDGDGEIRYWSINNGSCTRV 761
+ + D D I + +
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 762 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 821
+ + + + ++ + + PS +A
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 822 SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------S 872
+ + E + + +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 873 LELWNMSENKT--MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918
+ ++++ L AH+ + L T + S+ D +K W
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.8 bits (153), Expect = 2e-11
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747
+AT S D + ++ P ++ H V +L + + S D
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADAC 280
Query: 748 IRYWSI 753
I+ W++
Sbjct: 281 IKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 9/128 (7%), Positives = 33/128 (25%), Gaps = 1/128 (0%)
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 766
+ + + S + + + +
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218
Query: 767 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSE 825
+ + + + I + + L H ++++ W+ L++S ++
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278
Query: 826 DSVRVWTV 833
++ W V
Sbjct: 279 ACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 5e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
L+T GH+ + +L +P + S DG I WS ++
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 8e-05
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 800 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG--ECVHELSCNGNKFHSCV 856
++ GH K I ++ +P L S S D + W+ S + + L + + +S +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 63
Query: 857 FHPTYPSLLVIGCYQSLELWNM 878
+ I ++ +
Sbjct: 64 SWDDTLKVNGITKHEFGSQPKV 85
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 62.5 bits (151), Expect = 1e-10
Identities = 30/298 (10%), Positives = 69/298 (23%), Gaps = 29/298 (9%)
Query: 646 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
D + T + L T + KT L+ + + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGK 84
Query: 704 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759
V + D ++ + S I +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 760 RVFKGGTAQMRFQP-------------HLGRYLAAAAE--NVVSILDAETQACRLSLQGH 804
++ Q H + + ++D + +
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204
Query: 805 T-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863
+ + D S + + ++ + + EG+ V G H +
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVIDT-KEGKLVAIEDTGGQTPHPG-RGANFVH 262
Query: 864 LLVIGCYQSLELWN----MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917
+ + + + + + I + G + +H L+
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 28/290 (9%), Positives = 71/290 (24%), Gaps = 33/290 (11%)
Query: 646 FSSDGKLLAT----------GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695
+ DG +A G ++ TL ++E + V P M
Sbjct: 54 VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM--T 111
Query: 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH------PNKDDLICSCDGDGEIR 749
+ + KT+ + + A LD P D DG +
Sbjct: 112 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA 171
Query: 750 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 809
+ + + + + + +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH------------ 219
Query: 810 SVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 869
SG+ + +++ G +++ + +
Sbjct: 220 -QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 870 YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLW 917
+ + + + + + I ++ VS + A ++ DK + +
Sbjct: 279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (126), Expect = 7e-08
Identities = 22/211 (10%), Positives = 43/211 (20%), Gaps = 7/211 (3%)
Query: 529 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 588
P GT + + +
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205
Query: 589 DRLVEDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH 645
+ + + P + + G+ V +
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--ATSSFDKT 703
+ V+ T + E I + S L A S+ DKT
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734
+ + DA++ G LR+ +
Sbjct: 325 LYIHDAES-GEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 25/210 (11%), Positives = 48/210 (22%), Gaps = 28/210 (13%)
Query: 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691
T+ DG L + ++ E LI +S
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTEVFHPEDEFLINHPAYSQK 205
Query: 692 MPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPN---------------- 734
RL ++ + D + L + + + + P
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 735 ---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAA--ENVV 787
+ D + G F+ G + L A + + +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 788 SILDAETQACRLSLQGHTKPIDSVCWDPSG 817
I DAE+ S+ + G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 2e-08
Identities = 16/108 (14%), Positives = 43/108 (39%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ 123
I +T++ +E ++ Q + + Q++ +Q Q+ Q+ +Q ++
Sbjct: 192 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 251
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ LL+ + Q+ +Q ++ Q + + + Q Q +
Sbjct: 252 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 2e-08
Identities = 13/104 (12%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
++ + E ++ R + + Q + + Q++++Q +Q+++ Q+ Q+ +
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ--MMEQKERSYQEHLKQLTE 250
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q ++ ++ + Q+Q+Q ++ Q++ + +
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (129), Expect = 3e-08
Identities = 12/88 (13%), Positives = 39/88 (44%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ + + Q + + Q++ + ++ Q+ +Q +M+ +Q +Q++
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q+Q+Q ++ Q+ + + Q +
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 1e-07
Identities = 13/118 (11%), Positives = 46/118 (38%)
Query: 56 WSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ 115
+ + T+ + + I+ + + Q + + Q+ + +Q+
Sbjct: 178 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 237
Query: 116 QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ Q+ + +++ R ++Q + + Q+Q+Q + Q++ + + +D
Sbjct: 238 ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (118), Expect = 8e-07
Identities = 14/102 (13%), Positives = 45/102 (44%)
Query: 54 EWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ 113
+ + I K AS ++ + +Q +Q+++ Q+ +Q +++ +
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q ++Q++ L ++ ++ ++ Q + + + + Q Q
Sbjct: 256 RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.1 bits (126), Expect = 8e-08
Identities = 25/319 (7%), Positives = 71/319 (22%), Gaps = 50/319 (15%)
Query: 646 FSSDGK---LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---------- 692
+ + + W + T + ++ S
Sbjct: 27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSF 86
Query: 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-------SLDFHPNKDDLICSCDGD 745
R A V V+D + A + + L+ G
Sbjct: 87 ARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145
Query: 746 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS----- 800
S+ S ++ K + + + ++ D
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205
Query: 801 -LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859
+ + G L+ +V+ + + + + N + + F
Sbjct: 206 CTGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAIDGNESGRKADNFRS 263
Query: 860 TYPSLLVIGCYQSLELWNMSENKTMTLTA-------------------HEGLIAALAVST 900
++ + E+ L A + A+ +
Sbjct: 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ 323
Query: 901 --ETGYVASASHDKFVKLW 917
+ A+++ + + ++
Sbjct: 324 DGASDNYANSAGTEVLDIY 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.4 bits (88), Expect = 0.003
Identities = 11/214 (5%), Positives = 44/214 (20%), Gaps = 20/214 (9%)
Query: 534 PSTHTPGDVISMPALPHSGTTSKP-LMMFGTDGAG---TLTSPSNQLWDDKDLELRADMD 589
+ + + H + + + L + A
Sbjct: 153 VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212
Query: 590 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE--ANSVRASTSKVICCHFS 647
+ + + D G + E + ++
Sbjct: 213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272
Query: 648 SDGKLLATGGHDKKAV---------LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--A 696
+ + + ++ + + + + A
Sbjct: 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYA 331
Query: 697 TSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSL 729
S+ + + ++DA + + + +S+
Sbjct: 332 NSAGTEVLDIYDAAS-DQDQSSVELDKGPESLSV 364
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 697 TSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
S + + VW+ ++ G +L + V + P+K L + + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 756 GSCTRVF 762
F
Sbjct: 69 DDGALTF 75
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 47.9 bits (114), Expect = 2e-06
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 28/122 (22%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-----------------QQQQLQMQQ 129
E ++ QQQ ++ + QQ Q HQ+ + + + +
Sbjct: 80 PETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAIS 139
Query: 130 ILLQRHAQQQQQ-----------HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+L + Q +H + QQQQQ ++Q Q QQQ +G +L
Sbjct: 140 LLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVL 199
Query: 179 NG 180
+G
Sbjct: 200 SG 201
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 37.5 bits (87), Expect = 0.004
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 62 IFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
I + T+ ++++ + L + + + QQQQQQ+ +Q HQQQ+++
Sbjct: 138 ISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGG 196
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.3 bits (111), Expect = 6e-06
Identities = 31/314 (9%), Positives = 67/314 (21%), Gaps = 44/314 (14%)
Query: 646 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
D T + L D+ K ++ + + R S S L D
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84
Query: 704 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759
+ + D ++ + + S I +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 760 RVFKGGTAQ---MRFQPHLGRYLAAAAEN-------------VVSILDAETQACRLSLQG 803
++ + P A+ V+ + + ++ G
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204
Query: 804 HTKPIDSVCWDPSGELLASV-------------SEDSVRVWTVGSGSEGECVHELSCNGN 850
+ WD S + + VG
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264
Query: 851 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA---- 906
H S+ +IG + K L G + ++ ++
Sbjct: 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWK-KVAELQGQGGGSLFIKTHPKSSHLYVDTT 323
Query: 907 ---SASHDKFVKLW 917
A + V ++
Sbjct: 324 FNPDARISQSVAVF 337
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.0 bits (87), Expect = 0.004
Identities = 21/153 (13%), Positives = 39/153 (25%), Gaps = 22/153 (14%)
Query: 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690
AN V V DG + G K + K L+ ++ P
Sbjct: 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFIKTHP 313
Query: 691 -------SMPRLATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNK 735
+ ++V V+D N P + V+ +++
Sbjct: 314 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 373
Query: 736 DDLICSC----DGDGEIRYWSINNGSCTRVFKG 764
D++ S + + V K
Sbjct: 374 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 28/267 (10%), Positives = 70/267 (26%), Gaps = 6/267 (2%)
Query: 655 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPG 713
+ + K + S+ SP ++ ++ V + D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT-N 64
Query: 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 773
+ T S+ K + + + +N V G +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 774 HLGRYL--AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 831
G+ L + VS+++ T+A ++ P ++ + +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 832 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 891
+ ++ + V + ++ + + NK
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 892 LIAALAVSTETGYV-ASASHDKFVKLW 917
A +AV+ + V + S V +
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 778 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS--VRVWTVGS 835
Y+A + + +S++D + ++ + P+ P G + + S V + +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884
+ V S S Y + + ++ + + T+
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112
|
| >d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), proglycinin [TaxId: 3847]
Score = 40.3 bits (94), Expect = 6e-04
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQ-------------------QQQQQLQMQQILLQ 133
++ QQ QQ+ QS +P + Q+ + + I+
Sbjct: 81 STFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDT 140
Query: 134 RHAQQQQQHQQQ--------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
+ Q + Q+ + QQ+ Q+ QQ++ +G +L+G
Sbjct: 141 NSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSG 195
|
| >d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: STAT-like superfamily: STAT family: STAT domain: STAT-1, coiled coil domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (89), Expect = 0.002
Identities = 12/87 (13%), Positives = 32/87 (36%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
IK+ E Q + + + Q ++ + Q+Q+Q + + +R +
Sbjct: 23 HEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKI 82
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQ 168
+ + + Q + + + +QQ
Sbjct: 83 IELLNVTELTQNALINDELVEWKRRQQ 109
|
| >d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: STAT-like superfamily: STAT family: STAT domain: STAT-1, coiled coil domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (88), Expect = 0.002
Identities = 10/84 (11%), Positives = 32/84 (38%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
+ + Q + + + Q + + + Q+Q+Q L+ ++L ++ +
Sbjct: 26 KSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIEL 85
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q + + +++QQ
Sbjct: 86 LNVTELTQNALINDELVEWKRRQQ 109
|
| >d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: Double-stranded DNA-binding domain family: Double-stranded DNA-binding domain domain: Programmed cell death protein 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (85), Expect = 0.002
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
R Q+ + Q + Q Q+ + ++ + + + Q+L Q
Sbjct: 2 RRQRLAELQAKHGDPGDAAQ------QEAKHREAEMRNSILAQVLDQ 42
|
| >d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 125 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin family: Seed storage protein, 2S albumin domain: 2S albumin RicC3 species: Castor bean (Ricinus communis) [TaxId: 3988]
Score = 36.8 bits (85), Expect = 0.002
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
RE QQ +Q+ Q++ ++ Q ++ ++ L+M Q+ QQ Q
Sbjct: 10 REGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQ 69
Query: 147 QQQQQQQQQPP-------QQPQQQQPQQQQQRR 172
+Q + + Q Q QQ Q ++ R
Sbjct: 70 VKQVRDECQCEAIKYIAEDQIQQGQLHGEESER 102
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 918 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.98 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.91 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.9 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.9 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.82 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.81 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.75 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.65 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.62 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.58 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.57 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.55 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.5 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.47 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.47 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.43 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.41 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.38 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.37 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.28 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.28 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.27 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.24 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.17 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.15 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.14 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.77 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.61 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.54 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.52 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.44 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.42 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.29 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.12 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.05 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.01 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.98 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.92 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.89 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.75 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.71 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.63 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.47 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.45 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.37 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.14 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.0 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.52 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.28 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.13 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.08 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.06 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.89 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 94.3 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.92 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.73 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.6 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.48 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 89.38 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 87.21 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 80.25 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-44 Score=295.00 Aligned_cols=284 Identities=19% Similarity=0.283 Sum_probs=248.7
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----EEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 3035446306999858999916999999996899399998899823-----46741379876999998999989998489
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-----KTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~-----~~~l~~h~~~V~~i~fspdg~~Lasgs~D 701 (918)
..+.+..+ .|...|+|++|+++|++||+|+ ||.|+|||+.+... .....+|...|.+++|+|++++|++++.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 75499987-9999289999989999999997-998899773677633116876404889968999986799889886123
Q ss_pred CEEEEEECCCCC-CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCE
Q ss_conf 809999579999-545885157887369997389990999981799299997579904578526---8118999129997
Q 002471 702 KTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR 777 (918)
Q Consensus 702 g~I~Iwdl~~~~-~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ 777 (918)
|.|++||+.... .....+..|...|.+++|+|++. ++++++.|+.|++|++.++++...... .+.++.|++++..
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 321111111111111111111111111111111111-1111111111111111111111111111111110123444321
Q ss_pred EEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEE
Q ss_conf 9999749919999789960899950799893799992999999999599-399998898998623798304899539999
Q 002471 778 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 778 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
+++++.|+.|++||+++++.+..+. +...|.+++|+|++++|++++.| .+++||++.+. . .....|...+.++.
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~i~~v~ 272 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---K-YQLHLHESCVLSLK 272 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---E-EEECCCSSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCC---C-CCCCCCCCCCCEEE
T ss_conf 1223566553211111100000246-66615799971530300000025642111111111---0-00012456541699
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 92799989999849919999899991899816679768999947999999996698399939
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
|+|++.+|++++.|+.|++||+.+++.+....|...|++++|+|++++|++|+.||.|+|||
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 98999999999489969999899997999926999879999927999999990899699997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.6e-44 Score=292.44 Aligned_cols=285 Identities=26% Similarity=0.495 Sum_probs=262.7
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 35446306999858999916999999996899399998899823467413798769999989999899984898099995
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwd 708 (918)
.+..+|++|.+.|++|+|+|++++|++|+.||+|+|||+.+++.+.++.+|...|.+++|++++.++++++.++.+.+|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 84489858888768999938989999993899299998999979999957888677776301111011111111101110
Q ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECCC
Q ss_conf 79999545885157887369997389990999981799299997579904578526---811899912999799997499
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~dg 785 (918)
... ......+.+|...+.++.|++++.. +++++.|+.+++||++++.....+.. .+.++.|++++..+++++.|+
T Consensus 88 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 165 (317)
T d1vyhc1 88 FQG-FECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165 (317)
T ss_dssp TTS-SCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC-CCCCCCCCCCCCCCEEEECCCCCCE-EEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECCC
T ss_conf 011-1111110000000000001699855-77652675235751144303468716777630000166799999992798
Q ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEECCC--------------------CCEEEEEECC-EEEEEECCCCCCCCEEEE
Q ss_conf 1999978996089995079989379999299--------------------9999999599-399998898998623798
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHE 844 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~I~si~~spd--------------------g~~Las~s~d-~I~iwdl~s~~~~~~i~~ 844 (918)
.|++|+..+......+.+|...+.++.|+++ +.++++++.| .|++|+++++ .++..
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~ 242 (317)
T d1vyhc1 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMT 242 (317)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEE
T ss_pred EEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCC---CEEEE
T ss_conf 299975125403478824778733799863256411103456303430258861475169978999888999---68899
Q ss_pred ECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 3048995399999279998999984991999989999189-9816679768999947999999996698399939
Q 002471 845 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 845 ~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
+..|...+.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 968899879999879999999997989499999999919999928999889999949999999992899499829
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6e-44 Score=291.05 Aligned_cols=282 Identities=27% Similarity=0.440 Sum_probs=243.1
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC------------------CCCCCEEEEEECCCCCEE
Q ss_conf 30699985899991699999999689939999889982346741------------------379876999998999989
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------------------EHSSLITDVRFSPSMPRL 695 (918)
Q Consensus 634 l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~------------------~h~~~V~~i~fspdg~~L 695 (918)
..+|.+.|+||+|++||++||+|+ |++|+|||+.+++.+..+. .|...|++++|+|++++|
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 079999689999999999999994-9948999813640576631665443244321110146778988999988999801
Q ss_pred EEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEEC
Q ss_conf 998489809999579999545885157887369997389990999981799299997579904578526--811899912
Q 002471 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQP 773 (918)
Q Consensus 696 asgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp 773 (918)
++|+.||.|++|+... +..+..+.+|...|.++.|++++.. +++++.++.|++||.++......... ....+.+.+
T Consensus 137 ~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
T d1erja_ 137 ATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214 (388)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred EECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 2134441111211111-1111111111111111011111111-1122210156541011111100001245442112368
Q ss_pred -CCCEEEEEECCCEEEEEECCCCEEEEEE-------CCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCC------
Q ss_conf -9997999974991999978996089995-------0799893799992999999999599-399998898998------
Q 002471 774 -HLGRYLAAAAENVVSILDAETQACRLSL-------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------ 838 (918)
Q Consensus 774 -~~~~ll~~~~dg~I~i~D~~t~~~~~~l-------~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~------ 838 (918)
++..+++++.|+.|++||.+++.....+ .+|...|.+++|+|++.+|++++.| .|++||++....
T Consensus 215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 294 (388)
T d1erja_ 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294 (388)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf 87875899738981999634557300010244333457789878999979999999997899289875157764321013
Q ss_pred ---CCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEE------ECCCCEEEEE
Q ss_conf ---6237983048995399999279998999984991999989999189-98166797689999------4799999999
Q 002471 839 ---GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV------STETGYVASA 908 (918)
Q Consensus 839 ---~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~------spdg~~Lasg 908 (918)
..+......|...+.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|.+.|.++++ +|++.+|++|
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~ 374 (388)
T d1erja_ 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374 (388)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred CCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEE
T ss_conf 44420011012455327899988999999999698979999999996999996889978999984674258999999999
Q ss_pred ECCCCEEEEC
Q ss_conf 6698399939
Q 002471 909 SHDKFVKLWK 918 (918)
Q Consensus 909 s~Dg~I~iWd 918 (918)
+.||.|+|||
T Consensus 375 s~Dg~I~iW~ 384 (388)
T d1erja_ 375 SGDCKARIWK 384 (388)
T ss_dssp ETTSEEEEEE
T ss_pred ECCCEEEEEE
T ss_conf 1899799976
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.6e-43 Score=284.45 Aligned_cols=288 Identities=21% Similarity=0.420 Sum_probs=252.7
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53035446306999858999916999999996899399998899823467413798769999989999899984898099
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~ 705 (918)
..++..++|++|.+.|+|++|+|++.+||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.++++++.|+.|+
T Consensus 43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~ 122 (340)
T d1tbga_ 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred CCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEE
T ss_conf 43065279888789888999989999999997899555631021025799724653377567601211443101332010
Q ss_pred EEECCCCC---CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---CCCEEEEEECCCCEEE
Q ss_conf 99579999---54588515788736999738999099998179929999757990457852---6811899912999799
Q 002471 706 VWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYL 779 (918)
Q Consensus 706 Iwdl~~~~---~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~---~~~~~i~~sp~~~~ll 779 (918)
+|+..... .....+.+|...+....+... . .+.....|.....|............ ..+....+.+....++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (340)
T d1tbga_ 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEESSSSCSCCCEEEEECCCSSCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE
T ss_conf 13322221222111001354211011111111-1-111112445432001232211111233101576300124421268
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEE--ECCCCCCEEEEE
Q ss_conf 99749919999789960899950799893799992999999999599-399998898998623798--304899539999
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCV 856 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~--~~~~~~~i~~i~ 856 (918)
++..|+.|++||+++++++..+.+|...|++++|+|++.+|++++.| .|++|+++.. ..+.. ...+...+.++.
T Consensus 201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEE
T ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCC---CCCCCCCCCCCCCCEEEEE
T ss_conf 7605736999999999488999578898589999799899999969996999752122---1111111224457458999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9279998999984991999989999189-9816679768999947999999996698399939
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
|++++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 989999999997979899999999939899848999789999908999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.3e-41 Score=271.84 Aligned_cols=278 Identities=16% Similarity=0.249 Sum_probs=221.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE
Q ss_conf 69998589999169999999968993999988998234674137987699999899998999848980999957999954
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 636 ~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~ 715 (918)
.+.+.+.+++++|+|+.|+.+. ++.|.+|++++......+.+|...|++++|+|++++|++|+.||+|+|||+.+....
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCC
T ss_conf 7788759999969989999996-999999999999661797478888899999489996722556736746631011110
Q ss_pred -EEEECCCCCCEEEEEECCCCCEEEEEEEC--CCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCE-EEEEECCCEEE
Q ss_conf -58851578873699973899909999817--99299997579904578526---8118999129997-99997499199
Q 002471 716 -LRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAAAAENVVS 788 (918)
Q Consensus 716 -~~~~~~h~~~V~si~fsp~~~~ll~sgs~--Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~-ll~~~~dg~I~ 788 (918)
...+.+|...|.+++|+|++..++ +++. +..+++|++++++....+.+ .+.++.|+|++.. +++++.|+.|+
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~-~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIA-AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEE-EEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 0001343357543323331110001-111221111111111111111111111111111111211101200011221111
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEE-------CCCCCCEEEEEEECC
Q ss_conf 99789960899950799893799992999999999599-3999988989986237983-------048995399999279
Q 002471 789 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-------SCNGNKFHSCVFHPT 860 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~-------~~~~~~i~~i~~sp~ 860 (918)
+||.++.+....+..|...|+++.|+|++++|++++.| .|++||+.++. .+..+ .+|...|.+++|+|+
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~s~~ 249 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPD 249 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111112347642212111111111000124464---112221111111002465321024788
Q ss_pred CCEEEEEECCCEEEEEECCCCCEE-EECCCCC-CEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 998999984991999989999189-9816679-768999947999999996698399939
Q 002471 861 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 861 g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~-~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
+.+|++++.|+.|+|||+.+++++ .+..+.. ....+.+.+++.+|++++.||.|++||
T Consensus 250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309 (311)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEE
T ss_conf 999999937996999999999699999799986332999995199999998999799995
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.4e-40 Score=266.48 Aligned_cols=274 Identities=16% Similarity=0.234 Sum_probs=227.8
Q ss_pred CCCEEEECCCCEEEC--CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 661899738980211--699726738882054300001126887675455101589998788885432456853035446
Q 002471 556 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 556 k~~~~fs~dg~~~~~--~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
.-.+.++|+|..++. ++.+.+||+.++ +....
T Consensus 20 ~~~~a~~~~g~~l~~~~~~~v~i~~~~~~----------------------------------------------~~~~~ 53 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSL----------------------------------------------TDTEI 53 (311)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCS----------------------------------------------SCCEE
T ss_pred EEEEEECCCCCEEEEEECCEEEEEECCCC----------------------------------------------CEEEE
T ss_conf 59999969989999996999999999999----------------------------------------------66179
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEEC--CCEEEEEEC
Q ss_conf 306999858999916999999996899399998899823--4674137987699999899998999848--980999957
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVRVWDA 709 (918)
Q Consensus 634 l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~I~Iwdl 709 (918)
+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+... ...+..|...|.+++|++++.+|++++. +..++||++
T Consensus 54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~ 133 (311)
T d1nr0a1 54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 133 (311)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred ECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 74788888999994899967225567367466310111100001343357543323331110001111221111111111
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECCCE
Q ss_conf 9999545885157887369997389990999981799299997579904578526---8118999129997999974991
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~dg~ 786 (918)
++ +.....+.+|...|++++|+|++..++++|+.|+.|++||+++.++...+.. .+.++.|+|++..+++++.|+.
T Consensus 134 ~~-~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~ 212 (311)
T d1nr0a1 134 DT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 212 (311)
T ss_dssp TT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11-11111111111111111112111012000112211111111111111111111111111234764221211111111
Q ss_pred EEEEECCCCEEEEEEC-------CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCC-CEEEEEE
Q ss_conf 9999789960899950-------799893799992999999999599-399998898998623798304899-5399999
Q 002471 787 VSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN-KFHSCVF 857 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~-------~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~-~i~~i~~ 857 (918)
|++||.+++.....+. +|...|++++|+|++++|++++.| .|+|||++++ +++..+..+.. ....+.+
T Consensus 213 v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~~~~~ 289 (311)
T d1nr0a1 213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIEDQQLGI 289 (311)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGGCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCCCCCEEEEE
T ss_conf 1000124464112221111111002465321024788999999937996999999999---6999997999863329999
Q ss_pred ECCCCEEEEEECCCEEEEEECC
Q ss_conf 2799989999849919999899
Q 002471 858 HPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~iwd~~ 879 (918)
.+++..|++++.||.|++||.+
T Consensus 290 ~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 290 IWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EECSSCEEEEETTCCEEEEETT
T ss_pred EECCCEEEEEECCCEEEEEECC
T ss_conf 9519999999899979999588
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-39 Score=263.95 Aligned_cols=282 Identities=16% Similarity=0.255 Sum_probs=238.3
Q ss_pred CCCCCCCCCCCCEEEECCCCEEEC--CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 778999999661899738980211--699726738882054300001126887675455101589998788885432456
Q 002471 547 ALPHSGTTSKPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQ 624 (918)
Q Consensus 547 ~~~~~~~~~k~~~~fs~dg~~~~~--~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~ 624 (918)
.+.|... ...+.|+++|.++++ ++.++|||+.......
T Consensus 47 ~~~H~~~--V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~-------------------------------------- 86 (337)
T d1gxra_ 47 TLNHGEV--VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS-------------------------------------- 86 (337)
T ss_dssp EECCSSC--CCEEEECSSSSEEEEECBSEEEEEETTSTTCCS--------------------------------------
T ss_pred ECCCCCC--EEEEEECCCCCEEEEEECCEEEEEECCCCCCCC--------------------------------------
T ss_conf 8799992--899999899999999979988997736776331--------------------------------------
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC--CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 85303544630699985899991699999999689939999889--9823467413798769999989999899984898
Q 002471 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 625 ~~s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~--~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg 702 (918)
........+|.+.|.+++|+|++++|++|+.|+.|++||+. +.+....+..|...|.++.|++++.++++++.|+
T Consensus 87 ---~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 163 (337)
T d1gxra_ 87 ---PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp ---CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ---EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ---16876404889968999986799889886123321111111111111111111111111111111111111111111
Q ss_pred EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEE
Q ss_conf 0999957999954588515788736999738999099998179929999757990457852--68118999129997999
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 703 ~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~ 780 (918)
.|++|++.+ +.+.....+|...|.+++|++++.. +++++.|+.|++||+++++.+..+. ..+.++.|++++..+++
T Consensus 164 ~i~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~-~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 241 (337)
T d1gxra_ 164 NIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTK-LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp CEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCE
T ss_conf 111111111-1111111111111110123444321-12235665532111111000002466661579997153030000
Q ss_pred EECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEEC
Q ss_conf 9749919999789960899950799893799992999999999599-399998898998623798304899539999927
Q 002471 781 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 859 (918)
++.++.|++||+++..... ...|...|++++|+|++++|++++.| .|++||+.++ .++..+. |...|.+++|+|
T Consensus 242 ~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~s~ 316 (337)
T d1gxra_ 242 GMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISV 316 (337)
T ss_dssp EETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE-CSSCEEEEEECT
T ss_pred ECCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEECC-CCCCEEEEEEEC
T ss_conf 0025642111111111000-0124565416999899999999948996999989999---7999926-999879999927
Q ss_pred CCCEEEEEECCCEEEEEEC
Q ss_conf 9998999984991999989
Q 002471 860 TYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~iwd~ 878 (918)
++++|++++.|+.|+|||+
T Consensus 317 d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 317 DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEECCCEEEEEEE
T ss_conf 9999999908996999977
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-40 Score=269.02 Aligned_cols=276 Identities=15% Similarity=0.224 Sum_probs=182.1
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC-C
Q ss_conf 9985899991699999999689939999889982--346741379876999998999989998489809999579999-5
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-Y 714 (918)
Q Consensus 638 ~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~-~ 714 (918)
.++|+|++|+||+++||+|+.|+.|+|||+.+.+ .+..+++|.+.|++++|+|++++|++++.|++|+|||+.+.. .
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCC
T ss_conf 98838999989999999994889899998889978999995588998889999799999999979993999862033211
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE-------ECCCEEEEEECCCCEEEEEECCCEE
Q ss_conf 458851578873699973899909999817992999975799045785-------2681189991299979999749919
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 715 ~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~-------~~~~~~i~~sp~~~~ll~~~~dg~I 787 (918)
....+.+|...|.+++|+|++. .+++++.|+.|++|++......... ...+.++.|+|++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
T ss_conf 0012232211000111111121-100000257630254420334331110010111222111111111110001347679
Q ss_pred EEEECCC------------------CEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCC
Q ss_conf 9997899------------------60899950799893799992999999999599-3999988989986237983048
Q 002471 788 SILDAET------------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 788 ~i~D~~t------------------~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
++|+... +........|...|.+++|+|++++|++++.| .|++||+..+ ..+..+..|
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~ 242 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLASE 242 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEECS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECC---CCEEEEECC
T ss_conf 99840157643100122111111110112440476674789875123321000014786058864101---210000014
Q ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEE--ECCCCCEE----------------------------------------EE
Q ss_conf 9953999992799989999849919999--89999189----------------------------------------98
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTM----------------------------------------TL 886 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~iw--d~~~~~~~----------------------------------------~~ 886 (918)
..++.+++|++++.+|+ ++.|+.+++| +....... ..
T Consensus 243 ~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (371)
T d1k8kc_ 243 TLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 321 (371)
T ss_dssp SCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCCCEEEEECCCCCEEE-EECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEEC
T ss_conf 66520365469997999-98199267877608986288720206765421246220016850652058712455661412
Q ss_pred CCCCCCEEEEEEECCC----CEEEEEECCCCEEEEC
Q ss_conf 1667976899994799----9999996698399939
Q 002471 887 TAHEGLIAALAVSTET----GYVASASHDKFVKLWK 918 (918)
Q Consensus 887 ~~h~~~V~~la~spdg----~~Lasgs~Dg~I~iWd 918 (918)
..|.+.|+++++.+.+ ..|+|++.||.|+||+
T Consensus 322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred CCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 555698899999489986567999991899399996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.1e-40 Score=268.51 Aligned_cols=285 Identities=17% Similarity=0.192 Sum_probs=231.8
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 3544630699985899991699999999689939999889982346741-379876999998999989998489809999
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iw 707 (918)
+..+.+.||.+.|+|++|+|++++|++|+.||+|++||+.+++.+..+. .|...|++++|++++. +++++.|+.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred CCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE-EECCCCEEEEEEE
T ss_conf 613684888878289999799999999908992999999999688998378877489988403311-2102310268873
Q ss_pred ECCCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCC
Q ss_conf 5799995--45885157887369997389990999981799299997579904578526811899912999799997499
Q 002471 708 DADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 708 dl~~~~~--~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~dg 785 (918)
++..... .......+...+.+++|++++..++ + +.++.+++|+.... ..........++.|++++..+++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~-~~~~~i~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-A-ACYKHIAIYSHGKL-TEVPISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-E-EESSEEEEEETTEE-EEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1677620111000111134432100112211111-2-22222211111111-1101111233221111111111111111
Q ss_pred EEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCE
Q ss_conf 19999789960899-950799893799992999999999599-3999988989986237983048995399999279998
Q 002471 786 VVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 786 ~I~i~D~~t~~~~~-~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
.|++||+++..... ....|...|++++|+|++.+|++++.+ .|++||+.++........+..|...|.+++|+|++.+
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 238 (299)
T d1nr0a2 159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238 (299)
T ss_dssp EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111124666451
Q ss_pred EEEEECCCEEEEEECCCCCEE---EECCC-CCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 999984991999989999189---98166-79768999947999999996698399939
Q 002471 864 LLVIGCYQSLELWNMSENKTM---TLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 864 l~s~s~dg~I~iwd~~~~~~~---~~~~h-~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
|++++.|+.|++||+.+.... ....| ...|.++.| +++.+|++++.||.|++||
T Consensus 239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEE
T ss_conf 388828997999989999731489834898896899997-7989999992899799994
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-38 Score=257.52 Aligned_cols=291 Identities=22% Similarity=0.317 Sum_probs=237.9
Q ss_pred CCCEEEECCCCEEEC--CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 661899738980211--699726738882054300001126887675455101589998788885432456853035446
Q 002471 556 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 556 k~~~~fs~dg~~~~~--~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
..++.|++||.++++ ++.++|||+.+++....+...... ... ........
T Consensus 65 V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~---~~~-------------------------~~~~~~~~ 116 (388)
T d1erja_ 65 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAA---NKD-------------------------PENLNTSS 116 (388)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-------------------------------------------
T ss_pred EEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCC---CCC-------------------------CCCCCCCC
T ss_conf 89999999999999994994899981364057663166544---324-------------------------43211101
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 30699985899991699999999689939999889982346741379876999998999989998489809999579999
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 634 l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~ 713 (918)
...|...|++++|++++++|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.|++||..+ .
T Consensus 117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~ 195 (388)
T d1erja_ 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-G 195 (388)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-T
T ss_pred CCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-C
T ss_conf 467789889999889998012134441111211111111111111111111101111111111222101565410111-1
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----------CCCEEEEEECCCCEEEEEEC
Q ss_conf 54588515788736999738999099998179929999757990457852----------68118999129997999974
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 714 ~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----------~~~~~i~~sp~~~~ll~~~~ 783 (918)
....... +.....++.+.+....++++++.|+.|++|++.++.....+. ..+.++.|++++..+++++.
T Consensus 196 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 274 (388)
T d1erja_ 196 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274 (388)
T ss_dssp EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCC-CCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 1100001-245442112368878758997389819996345573000102443334577898789999799999999978
Q ss_pred CCEEEEEECCCCE------------EEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCC
Q ss_conf 9919999789960------------899950799893799992999999999599-399998898998623798304899
Q 002471 784 ENVVSILDAETQA------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 784 dg~I~i~D~~t~~------------~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
|+.|++||+++.. +......|...|.+++|+|++++|++++.| .|++||++++ +++..+..|..
T Consensus 275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~ 351 (388)
T d1erja_ 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRN 351 (388)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCC
T ss_conf 992898751577643210134442001101245532789998899999999969897999999999---69999968899
Q ss_pred CEEEEEE------ECCCCEEEEEECCCEEEEEECC
Q ss_conf 5399999------2799989999849919999899
Q 002471 851 KFHSCVF------HPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 851 ~i~~i~~------sp~g~~l~s~s~dg~I~iwd~~ 879 (918)
.|.++++ +|++.+|++++.|+.|+||+++
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 78999984674258999999999189979997621
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-37 Score=250.38 Aligned_cols=283 Identities=17% Similarity=0.310 Sum_probs=214.9
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 30354463069998589999169999999968993999988998234674137987699999899998999848980999
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~I 706 (918)
.+++...+++|.+.|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|...|.+++|+++ +|++++.|+.+++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV 81 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred CCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCC
T ss_conf 88758898886875099-99978999999918990999989999799999488999899994798--6321000001111
Q ss_pred EECCCCCCEEEEECCCCCCEEE--------------------------------------EEECCCCCEEEEEEECCCCE
Q ss_conf 9579999545885157887369--------------------------------------99738999099998179929
Q 002471 707 WDADNPGYSLRTFMGHSASVMS--------------------------------------LDFHPNKDDLICSCDGDGEI 748 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~s--------------------------------------i~fsp~~~~ll~sgs~Dg~I 748 (918)
|+... .........+...+.. ..+..... ++++++.|+.|
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i 159 (342)
T d2ovrb2 82 WNAET-GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMV 159 (342)
T ss_dssp EETTT-TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS-CEEEEETTSCE
T ss_pred CCCCC-CCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCC-EEEEECCCCEE
T ss_conf 11110-00000012333047652024652212344403787403556300111001111000001333-02433589869
Q ss_pred EEEECCCCEEEEEEECC-CEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-
Q ss_conf 99975799045785268-1189991299979999749919999789960899950799893799992999999999599-
Q 002471 749 RYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 826 (918)
Q Consensus 749 ~iwdi~~~~~~~~~~~~-~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d- 826 (918)
++||.+...++..+.++ .....+..++..+++++.|+.|++||++..+++..+.+|...+.++.++ +++|++++.|
T Consensus 160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~ 237 (342)
T d2ovrb2 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS 237 (342)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECC--CCEEEEECCCC
T ss_conf 9952523436678727544421006899999999589939995255653656741665320577068--99999974898
Q ss_pred EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EE-----CCCCCCEEEEEEEC
Q ss_conf 3999988989986237983048995399999279998999984991999989999189-98-----16679768999947
Q 002471 827 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVST 900 (918)
Q Consensus 827 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~-----~~h~~~V~~la~sp 900 (918)
.|++||+........+.....|...+.++.+ ++.++++++.|+.|++||+++++.+ .+ .+|.+.|++++|+|
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred EEEEEECCCCCCCCCCCCCCEEEECEEECCC--CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC
T ss_conf 8999865544221112210001101000013--79844999089989999999997989986234789889789999879
Q ss_pred CCCEEEEEECCCC----EEEEC
Q ss_conf 9999999966983----99939
Q 002471 901 ETGYVASASHDKF----VKLWK 918 (918)
Q Consensus 901 dg~~Lasgs~Dg~----I~iWd 918 (918)
++.+|++|+.||+ |++||
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEEE
T ss_conf 9989999968999704899993
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-36 Score=242.14 Aligned_cols=271 Identities=23% Similarity=0.465 Sum_probs=239.1
Q ss_pred CCCEEEECCCCEEEC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 661899738980211---69972673888205430000112688767545510158999878888543245685303544
Q 002471 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 556 k~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~ 632 (918)
...+.|+|++.++++ ++.++|||+.+++ .+.
T Consensus 20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~----------------------------------------------~~~ 53 (317)
T d1vyhc1 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGD----------------------------------------------FER 53 (317)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCC----------------------------------------------CCE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCC----------------------------------------------EEE
T ss_conf 6899993898999999389929999899997----------------------------------------------999
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 63069998589999169999999968993999988998234674137987699999899998999848980999957999
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 633 ~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~ 712 (918)
++.+|.+.|.+++|++++.+++++..++.+.+|+.........+..|...+.++.|++++..+++++.|+.+++||+++
T Consensus 54 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~- 132 (317)
T d1vyhc1 54 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT- 132 (317)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-
T ss_pred EEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCC-
T ss_conf 9957888677776301111011111111101110011111111000000000000169985577652675235751144-
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECC---------------
Q ss_conf 9545885157887369997389990999981799299997579904578526---8118999129---------------
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH--------------- 774 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~--------------- 774 (918)
+..+..+.+|...+.+++|++++. ++++++.|+.|++|++...+....+.. .+..+.+.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 211 (317)
T d1vyhc1 133 GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211 (317)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred CEEEEEECCCCCCCEEEECCCCCC-EEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEE
T ss_conf 303468716777630000166799-9999927982999751254034788247787337998632564111034563034
Q ss_pred -----CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCC
Q ss_conf -----9979999749919999789960899950799893799992999999999599-3999988989986237983048
Q 002471 775 -----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 775 -----~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
+..+++++.|+.|++||.++++++..+.+|...|.+++|+|++++|++++.| .|++||+.++ +++..+..|
T Consensus 212 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h 288 (317)
T d1vyhc1 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAH 288 (317)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECC
T ss_pred EECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEECCC
T ss_conf 30258861475169978999888999688999688998799998799999999979894999999999---199999289
Q ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 99539999927999899998499199998
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELWN 877 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~iwd 877 (918)
...|++++|+|++.+|++++.|+.|++||
T Consensus 289 ~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 99889999949999999992899499829
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.7e-36 Score=240.80 Aligned_cols=277 Identities=20% Similarity=0.308 Sum_probs=217.1
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC--CCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 03544630699985899991699999999689939999889982346741379--8769999989999899984898099
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS--SLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~--~~V~~i~fspdg~~Lasgs~Dg~I~ 705 (918)
.+.+.++++|.+.|++++|++++ +|++|+.|++|++|+.............. ..+..+.+.+++.++++++.|+.|+
T Consensus 43 ~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 121 (355)
T d1nexb2 43 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121 (355)
T ss_dssp TEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEE
T ss_conf 93999997899988999986999-99999645244321111111111110011111111111112322045543888689
Q ss_pred EEECCCCCCE----------------------EEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE
Q ss_conf 9957999954----------------------588515788736999738999099998179929999757990457852
Q 002471 706 VWDADNPGYS----------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 706 Iwdl~~~~~~----------------------~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~ 763 (918)
+|++...... +.....|...+..... ++ .+++++..|+.|++||+++++.+..+.
T Consensus 122 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~ 198 (355)
T d1nexb2 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--HG-NIVVSGSYDNTLIVWDVAQMKCLYILS 198 (355)
T ss_dssp EEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE--ET-TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCC--CC-CEEEEECCCCEEEEEECCCCCCEEEEE
T ss_conf 998567730012465200010000011234012101100222100002--56-334421144204443013110001100
Q ss_pred C---CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCC
Q ss_conf 6---81189991299979999749919999789960899950799893799992999999999599-3999988989986
Q 002471 764 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 839 (918)
Q Consensus 764 ~---~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~ 839 (918)
. ....+.+++.+..+++++.|+.|++||.+++..+..+.+|...|.++.|+ +++|++++.| .|++||+++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-- 274 (355)
T d1nexb2 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-- 274 (355)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC--
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCC--
T ss_conf 012332111111210021012456368763012211111111111111111232--1003332011111111111111--
Q ss_pred CEEEEECCCCCCEEEE-EEECCCCEEEEEECCCEEEEEECCCCCEE--EECCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 2379830489953999-99279998999984991999989999189--98166797689999479999999966983999
Q 002471 840 ECVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i-~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~i 916 (918)
. .+..|...+..+ .+++++. +++++.|+.|++||+++++++ .+.+|.+.|++++|+++ .++++++.||.++|
T Consensus 275 -~--~~~~~~~~~~~~~~~~~~~~-~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l 349 (355)
T d1nexb2 275 -R--KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFL 349 (355)
T ss_dssp -E--EEEEECTTCCCCCEEEECSS-EEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEE
T ss_pred -E--ECCCCCCCCEEEEEECCCCC-EEEEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEE
T ss_conf -0--00124688229999849998-9999809979999999997988884589998999998399-19999989890999
Q ss_pred E
Q ss_conf 3
Q 002471 917 W 917 (918)
Q Consensus 917 W 917 (918)
|
T Consensus 350 ~ 350 (355)
T d1nexb2 350 E 350 (355)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-36 Score=242.19 Aligned_cols=277 Identities=20% Similarity=0.338 Sum_probs=223.2
Q ss_pred EEEEEECCCCCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 544630699985-8999916999999996899399998899823467413798769999989999899984898099995
Q 002471 630 EANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 630 ~~~~l~~H~~~V-~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwd 708 (918)
+..+|++|.+.| +|++| ++++||+|+.||+|+|||+.+++++.++.+|.+.|++++|+++ .+|++++.|++|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CCEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf 758889837886999998--8999999918990999989999399999789998899998699-9999996452443211
Q ss_pred CCCCCCEEEEECCCCC--CEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----------------------
Q ss_conf 7999954588515788--736999738999099998179929999757990457852-----------------------
Q 002471 709 ADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------------------- 763 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~--~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----------------------- 763 (918)
+.. ............ .+....+.+++ .++++++.|+.|++||++.........
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 81 IKK-GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp TTT-TEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEE
T ss_conf 111-1111111001111111111111232-20455438886899985677300124652000100000112340121011
Q ss_pred C-CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCE
Q ss_conf 6-81189991299979999749919999789960899950799893799992999999999599-399998898998623
Q 002471 764 G-GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 764 ~-~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~ 841 (918)
. ......+.+++..++.+..|+.|++||+++.+.+..+.++...+.++.|++++.++++++.| .|++||++++ .+
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~ 235 (355)
T d1nexb2 159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL 235 (355)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CE
T ss_pred ECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCC---CC
T ss_conf 002221000025633442114420444301311000110001233211111121002101245636876301221---11
Q ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEE-EEECCCCEEEEEECCCCEEEEC
Q ss_conf 7983048995399999279998999984991999989999189981667976899-9947999999996698399939
Q 002471 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL-AVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l-a~spdg~~Lasgs~Dg~I~iWd 918 (918)
+..+..|...+.++.+++ .+|++++.|+.|++||+.+.... +..|...+.++ .+++++.+|++| .||.|+|||
T Consensus 236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd 309 (355)
T d1nexb2 236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN 309 (355)
T ss_dssp EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE-EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEE-CCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEE
T ss_conf 111111111111112321--00333201111111111111100-012468822999984999899998-099799999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.6e-37 Score=246.25 Aligned_cols=280 Identities=15% Similarity=0.180 Sum_probs=219.6
Q ss_pred CCCEEEECCCCEEECC---CCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 6618997389802116---9972673888205430000112688767545510158999878888543245685303544
Q 002471 556 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 556 k~~~~fs~dg~~~~~~---~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~ 632 (918)
..++.|++||..++++ +.++|||...+ .+..+.
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~--------------------------------------------~~~~~~ 45 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------------------------KWVQVH 45 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------------------------EEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCC--------------------------------------------CEEEEE
T ss_conf 389999899999999948898999988899--------------------------------------------789999
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 6306999858999916999999996899399998899823--46741379876999998999989998489809999579
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 633 ~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~ 710 (918)
.+++|.+.|++++|+|++++|++++.|++|+|||+.+... ...+.+|...|++++|+|+++.|++++.|++|++|+++
T Consensus 46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~ 125 (371)
T d1k8kc_ 46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125 (371)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
T ss_conf 95588998889999799999999979993999862033211001223221100011111112110000025763025442
Q ss_pred CCCCE---EEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCE------------------EEEEEE---CCC
Q ss_conf 99954---588515788736999738999099998179929999757990------------------457852---681
Q 002471 711 NPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------CTRVFK---GGT 766 (918)
Q Consensus 711 ~~~~~---~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~------------------~~~~~~---~~~ 766 (918)
..... ......|...|.+++|+|++. ++++++.|+.|++|+..... ...... ..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 204 (371)
T d1k8kc_ 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204 (371)
T ss_dssp TTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE
T ss_conf 03343311100101112221111111111-10001347679998401576431001221111111101124404766747
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCC------
Q ss_conf 18999129997999974991999978996089995079989379999299999999959939999889899862------
Q 002471 767 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE------ 840 (918)
Q Consensus 767 ~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d~I~iwdl~s~~~~~------ 840 (918)
.+++|+|++..+++++.|+.|++||..++..+..+..|..+|.+++|++++.+|+++.++.+++|.........
T Consensus 205 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~ 284 (371)
T d1k8kc_ 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 284 (371)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEEE
T ss_conf 89875123321000014786058864101210000014665203654699979999819926787760898628872020
Q ss_pred --------------------------------EEEEECCCCCCEEEEEEECCC----CEEEEEECCCEEEEEECCC
Q ss_conf --------------------------------379830489953999992799----9899998499199998999
Q 002471 841 --------------------------------CVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 841 --------------------------------~i~~~~~~~~~i~~i~~sp~g----~~l~s~s~dg~I~iwd~~~ 880 (918)
.......|.+.|.++++.+.+ ..|++++.||.|++||+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 6765421246220016850652058712455661412555698899999489986567999991899399996986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-35 Score=237.86 Aligned_cols=250 Identities=17% Similarity=0.263 Sum_probs=175.3
Q ss_pred EEEEEEECC-CCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCEE--------EEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 354463069-99858999916--9999999968993999988998234--------674137987699999899998999
Q 002471 629 KEANSVRAS-TSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVRFSPSMPRLAT 697 (918)
Q Consensus 629 ~~~~~l~~H-~~~V~~i~fsp--dg~~Latgs~Dg~I~iwd~~~~~~~--------~~l~~h~~~V~~i~fspdg~~Las 697 (918)
.....+.+| ...|++++|+| ++.+|++|+.||+|+|||+...+.. ..+..|...|.+++|++++++|++
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 132 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCE
T ss_conf 50289907899988999981179997999994899779854058862156510025411365673779998999882201
Q ss_pred EEC--CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCC
Q ss_conf 848--980999957999954588515788736999738999099998179929999757990457852681189991299
Q 002471 698 SSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 775 (918)
Q Consensus 698 gs~--Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~ 775 (918)
++. ++.+++|+.++ +.++..+.+|...|.+++|+|++..++++++.|+.|++||+...+....+..
T Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~----------- 200 (325)
T d1pgua1 133 VGEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----------- 200 (325)
T ss_dssp EECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-----------
T ss_pred EECCCCCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCC-----------
T ss_conf 0012440478885023-3110012001234321111234320688862111221111221100000000-----------
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCC-CCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEE
Q ss_conf 97999974991999978996089995079989379999299-9999999599-399998898998623798304899539
Q 002471 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spd-g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
+..|...|.+++|+|+ +.+|++++.| .|++||++++ .++..+..|...+.
T Consensus 201 -------------------------~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~ 252 (325)
T d1pgua1 201 -------------------------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQ 252 (325)
T ss_dssp -------------------------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCC
T ss_pred -------------------------CCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCC---CCCCCCCCCCCCCC
T ss_conf -------------------------15777752776303453100001123321013430012---22111111111111
Q ss_pred EEEEE---CCCCEEEEEECCCEEEEEECCCCCEE-EECCCCC--CEEEEEEEC-CCCEEEEEECCCCEEEEC
Q ss_conf 99992---79998999984991999989999189-9816679--768999947-999999996698399939
Q 002471 854 SCVFH---PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG--LIAALAVST-ETGYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~s---p~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~--~V~~la~sp-dg~~Lasgs~Dg~I~iWd 918 (918)
.+.|+ +++.+|++++.|+.|+|||+.+++++ .+..|.. .+..+++.+ .+.+|++++.||.|++||
T Consensus 253 ~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp SCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 100000036899999995899399999999978899995487406769999988999999997999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.4e-34 Score=226.17 Aligned_cols=275 Identities=21% Similarity=0.428 Sum_probs=219.2
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 30354463069998589999169999999968993999988998234674137987699999899998999848980999
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~I 706 (918)
.+..+....+|...|+|++| |+++||+|+.||+|+|||+.+++++.++.+|...|++++| ++++|++|+.|+.|++
T Consensus 4 ~~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 4 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 79 (293)
T ss_dssp CCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred EEEEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCC
T ss_conf 67898432899998899987--6999999928993999999999199999267787763423--6300210011101100
Q ss_pred EECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE---EECCC-EEEEEECCCCEEEEEE
Q ss_conf 9579999545885157887369997389990999981799299997579904578---52681-1899912999799997
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGT-AQMRFQPHLGRYLAAA 782 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~---~~~~~-~~i~~sp~~~~ll~~~ 782 (918)
|++.. +........+...... +..... .++++..++.+++|+......... +..+. ....+......+++++
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s 155 (293)
T d1p22a2 80 WDVNT-GEMLNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 155 (293)
T ss_dssp EESSS-CCEEEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred CCCCC-CCCCCCCCCCCCCCCC--CCCCCC-CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 00024-6410011111100001--111110-0000135663068613445444212100011354311000002201106
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCC
Q ss_conf 49919999789960899950799893799992999999999599-39999889899862379830489953999992799
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
.|+.|++||.++.+.+..+.++...+..+.++ +.++++++.| .|++||+++. ..+..+..+...+.. +.+++
T Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~~ 228 (293)
T d1p22a2 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFDN 228 (293)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECCS
T ss_pred CCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCC---EEEEEECCCCEEEEE--CCCCC
T ss_conf 99860410078883889971554453221689--875887658998999866556---146652143100000--14541
Q ss_pred CEEEEEECCCEEEEEECCC---------CCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9899998499199998999---------9189-9816679768999947999999996698399939
Q 002471 862 PSLLVIGCYQSLELWNMSE---------NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 862 ~~l~s~s~dg~I~iwd~~~---------~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
.+|++++.|+.|++||+.. ...+ .+.+|.+.|++++|+ +.+|++++.||.|+|||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf 079998679979999888886444567754557845889988999971--99999992299899959
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-35 Score=234.66 Aligned_cols=288 Identities=13% Similarity=0.074 Sum_probs=214.8
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE---EEECCCCCCEEEEEECCC-CCEEEEEECCCEE
Q ss_conf 354463069998589999169999999968993999988998234---674137987699999899-9989998489809
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPS-MPRLATSSFDKTV 704 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~---~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg~I 704 (918)
+.+....+|.+.|++|+|+|++++||+|+.||+|+|||+...... ....+|...|++++|+++ +.+|++|+.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999789981265311
Q ss_pred EEEECCCCCCEEEEECCCCCCE-EEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE----E-----CCCEEEEEECC
Q ss_conf 9995799995458851578873-699973899909999817992999975799045785----2-----68118999129
Q 002471 705 RVWDADNPGYSLRTFMGHSASV-MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K-----GGTAQMRFQPH 774 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V-~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~----~-----~~~~~i~~sp~ 774 (918)
++|++..... ......+...+ ....+.++ ...+++++.|+.+++||++........ . .......+.+.
T Consensus 82 ~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
T d1yfqa_ 82 LKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp EEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEEECCCCCC-CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECC
T ss_conf 4542044320-00001111111111111111-111111012221110202344433023000243001200000100016
Q ss_pred CCEEEEEECCCEEEEEECCCCEE---EEEECCCCCCEEEEEECC-CCCEEEEEECC-EEEEEECCCCCCCC------EE-
Q ss_conf 99799997499199997899608---999507998937999929-99999999599-39999889899862------37-
Q 002471 775 LGRYLAAAAENVVSILDAETQAC---RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGE------CV- 842 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~---~~~l~~h~~~I~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~------~i- 842 (918)
...+++++.|+.|++||++.... ..........+.++.+.+ ++..+++++.| .+.+|++....... ..
T Consensus 160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred CCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEE
T ss_conf 87024651798478876056763411121025422101467636999878865489959999805986401112351256
Q ss_pred -----EEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf -----983048995399999279998999984991999989999189981667976899994799999999669839993
Q 002471 843 -----HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 843 -----~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iW 917 (918)
.....+...+.+++|+|++.+|++++.||.|++||+.+++.+....+...+..++|++++.++++++.|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~ 319 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred EEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCEEEE
T ss_conf 55531477762354315996698447999879998999999989498870589998799999479999999919927883
Q ss_pred C
Q ss_conf 9
Q 002471 918 K 918 (918)
Q Consensus 918 d 918 (918)
.
T Consensus 320 ~ 320 (342)
T d1yfqa_ 320 A 320 (342)
T ss_dssp S
T ss_pred E
T ss_conf 0
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.4e-35 Score=232.87 Aligned_cols=269 Identities=12% Similarity=0.177 Sum_probs=222.4
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 30354463069998589999169999999968993999988998234674137987699999899998999848980999
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~I 706 (918)
.-++++++++|.+.|+|++|++ |++|+.||+|++||+.+. ..+|...|.++.|+++ ..+++++.|++|++
T Consensus 2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~ 71 (287)
T d1pgua2 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEE
T ss_pred CCCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCC-CEEEEEEECCCCCC
T ss_conf 9603499988798649999895----789848991999989998-----8887787899996599-72898861012221
Q ss_pred EECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCC-
Q ss_conf 9579999545885157887369997389990999981799299997579904578526811899912999799997499-
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN- 785 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~dg- 785 (918)
|++... .....+.++.+.+++. ++ ....++.+.+|+...++.+..+........+.+++..+++++.++
T Consensus 72 w~~~~~--------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 72 NGITKH--------EFGSQPKVASANNDGF-TA-VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp TTEEEE--------ECSSCEEEEEECSSSE-EE-EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred CCCCCC--------CCCCCEEEEEECCCCC-EE-EEEECCCCEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 111111--------1122101466416785-69-9960332100001100354310122203565214751110002210
Q ss_pred EEEEEECCCCEEEEEECC-CCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECC---
Q ss_conf 199997899608999507-99893799992999999999599-3999988989986237983048995399999279---
Q 002471 786 VVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT--- 860 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~-h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~--- 860 (918)
.+++|++........+.. +...+++++|+|++.+|++++.| .|++||+.++. .....+..|...+.+++|+|.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--VKTSRWAFRTSKINAISWKPAEKG 219 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEECCSCCCSSCEEEEEECCCC--
T ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCC--CCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 002100012210001210247853699951676521101111110000002332--110001111111100000136541
Q ss_pred -------CCEEEEEECCCEEEEEECCC-CCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf -------99899998499199998999-9189-9816679768999947999999996698399939
Q 002471 861 -------YPSLLVIGCYQSLELWNMSE-NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 861 -------g~~l~s~s~dg~I~iwd~~~-~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
+.+|++++.|+.|++||+.. .+.+ .+.+|...|++++|++++ .|++++.|+.|++|+
T Consensus 220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEE
T ss_conf 001267887027664999599988899975899927878985899998999-899997999299999
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-32 Score=218.91 Aligned_cols=270 Identities=23% Similarity=0.419 Sum_probs=228.6
Q ss_pred CCCEEEECCCCEEEC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 661899738980211---69972673888205430000112688767545510158999878888543245685303544
Q 002471 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 556 k~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~ 632 (918)
...+.|++++.++++ ++.++|||..++ +.+.
T Consensus 58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~----------------------------------------------~~~~ 91 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTT----------------------------------------------NKVH 91 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTT----------------------------------------------EEEE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCC----------------------------------------------EEEE
T ss_conf 889999899999999978995556310210----------------------------------------------2579
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC----CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 6306999858999916999999996899399998899----823467413798769999989999899984898099995
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 633 ~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~----~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwd 708 (918)
.+..|...|.+++|+|++.++++|+.|+.+++|+... ......+.+|...+.+..+.. +..++....|..+..|.
T Consensus 92 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 170 (340)
T d1tbga_ 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
T ss_conf 97246533775676012114431013320101332222122211100135421101111111-11111112445432001
Q ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECCC
Q ss_conf 79999545885157887369997389990999981799299997579904578526---811899912999799997499
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~dg 785 (918)
... .........+...+..+.+.+... ++++++.|+.|++||+++++++..+.+ .+.+++|+|++..+++++.|+
T Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~ 248 (340)
T d1tbga_ 171 IET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp TTT-TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC-CCCCCCCCCCCEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 232-211111233101576300124421-268760573699999999948899957889858999979989999996999
Q ss_pred EEEEEECCCCEEEEEEC--CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCC
Q ss_conf 19999789960899950--799893799992999999999599-399998898998623798304899539999927999
Q 002471 786 VVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~--~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
.|++||.+.......+. .+...|.+++|++++.+|++++.| .|++||+.++ .++..+..|...|.+++|+|++.
T Consensus 249 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s~d~~ 325 (340)
T d1tbga_ 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGM 325 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEECCCCCCEEEEEEECCCC
T ss_conf 699975212211111112244574589999899999999979798999999999---39899848999789999908999
Q ss_pred EEEEEECCCEEEEEE
Q ss_conf 899998499199998
Q 002471 863 SLLVIGCYQSLELWN 877 (918)
Q Consensus 863 ~l~s~s~dg~I~iwd 877 (918)
+|++++.|+.|++||
T Consensus 326 ~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEECCCCEEEEEC
T ss_conf 999990699799859
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-33 Score=223.25 Aligned_cols=284 Identities=15% Similarity=0.208 Sum_probs=209.7
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE------EEEECCCCCCEEEEEE------CC-CCCEE
Q ss_conf 35446306999858999916999999996899399998899823------4674137987699999------89-99989
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRF------SP-SMPRL 695 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~------~~~l~~h~~~V~~i~f------sp-dg~~L 695 (918)
......++|.+.|+++++++ ++|++++.|++|+|||..+... ......|...+..+.+ .. +..++
T Consensus 5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred EEEECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEE
T ss_conf 24520876367127999969--9999997999699878987887765404676542047716766675001579987689
Q ss_pred EEEECCCEEEEEECCCCCCEEEE---------ECCCCCCEEEEEECCCC----CEEEEEEECCCCEEEEECCCCE-----
Q ss_conf 99848980999957999954588---------51578873699973899----9099998179929999757990-----
Q 002471 696 ATSSFDKTVRVWDADNPGYSLRT---------FMGHSASVMSLDFHPNK----DDLICSCDGDGEIRYWSINNGS----- 757 (918)
Q Consensus 696 asgs~Dg~I~Iwdl~~~~~~~~~---------~~~h~~~V~si~fsp~~----~~ll~sgs~Dg~I~iwdi~~~~----- 757 (918)
++++.||.|++|++......... ...+...+..++|.++. ..++++++.||.|++|++....
T Consensus 83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~ 162 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162 (393)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCE
T ss_conf 99948991999982289820565124563243115789668999844788654217999838981999874047753410
Q ss_pred ----------EEEEE------ECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECC
Q ss_conf ----------45785------268118999129997999974991999978996089995------07998937999929
Q 002471 758 ----------CTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDP 815 (918)
Q Consensus 758 ----------~~~~~------~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l------~~h~~~I~si~~sp 815 (918)
..... ...+.++.|++++ .+++++.|+.|++||+++++++..+ .+|..+|++++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred EEEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 2331032000145100025789867899978999-899993898299986023321100001111124256387700466
Q ss_pred CCCEEEEEECC-E---EEEEECCCCCCCCEEEEE-------------CCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 99999999599-3---999988989986237983-------------048995399999279998999984991999989
Q 002471 816 SGELLASVSED-S---VRVWTVGSGSEGECVHEL-------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 816 dg~~Las~s~d-~---I~iwdl~s~~~~~~i~~~-------------~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 878 (918)
++++|++++.| + |++||+.++ .++..+ .+|...|++++|+|++++|++++.|+.|++||+
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g---~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEECCCCCCCEEEECCCCCC---EEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEEC
T ss_conf 5320112428988421001035321---3444311566664310232023586660013898880698779998999999
Q ss_pred CCCCEE-EECCCCC---------------------CEEEEEEECCC----------CEEEEEECCCCEEEEC
Q ss_conf 999189-9816679---------------------76899994799----------9999996698399939
Q 002471 879 SENKTM-TLTAHEG---------------------LIAALAVSTET----------GYVASASHDKFVKLWK 918 (918)
Q Consensus 879 ~~~~~~-~~~~h~~---------------------~V~~la~spdg----------~~Lasgs~Dg~I~iWd 918 (918)
.+++++ ++.+|.. .+.++.|.+.+ ..|++++.|+.|++|+
T Consensus 319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEE
T ss_conf 999799999886876137734899999999999831246998866766312368899799999199089990
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-32 Score=218.63 Aligned_cols=269 Identities=16% Similarity=0.177 Sum_probs=205.1
Q ss_pred CCCEEEECCCCEEEC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 661899738980211---69972673888205430000112688767545510158999878888543245685303544
Q 002471 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 556 k~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~ 632 (918)
...+.|+|||.++++ ++.+++||+.++.. ..
T Consensus 15 V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~----------------------------------------------~~ 48 (299)
T d1nr0a2 15 ITALSSSADGKTLFSADAEGHINSWDISTGIS----------------------------------------------NR 48 (299)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCE----------------------------------------------EE
T ss_pred CEEEEECCCCCEEEEECCCCEEEEEECCCCCE----------------------------------------------EE
T ss_conf 28999979999999990899299999999968----------------------------------------------89
Q ss_pred EE-ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC---EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 63-0699985899991699999999689939999889982---3467413798769999989999899984898099995
Q 002471 633 SV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 633 ~l-~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~---~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwd 708 (918)
.+ .+|...|++++|++++.++ +++.|+.+++|+..... .......+...+.+++|++++.++++++ ++.+++|+
T Consensus 49 ~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~ 126 (299)
T d1nr0a2 49 VFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYS 126 (299)
T ss_dssp CSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEE
T ss_pred EECCCCCCCEEEEEEECCCEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 9837887748998840331121-023102688731677620111000111134432100112211111222-22221111
Q ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE----ECCCEEEEEECCCCEEEEEECC
Q ss_conf 799995458851578873699973899909999817992999975799045785----2681189991299979999749
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~----~~~~~~i~~sp~~~~ll~~~~d 784 (918)
... ..... ....+.+++|+|++. ++++++.|+.|++||+++.+..... ...+.++.|++++..+++++.+
T Consensus 127 ~~~---~~~~~--~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 200 (299)
T d1nr0a2 127 HGK---LTEVP--ISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 200 (299)
T ss_dssp TTE---EEEEE--CSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCC---CCCCC--CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 111---11101--111233221111111-111111111111111111111111111111111111111111111111111
Q ss_pred CEEEEEECCCCEEE---EEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECC
Q ss_conf 91999978996089---9950799893799992999999999599-3999988989986237983048995399999279
Q 002471 785 NVVSILDAETQACR---LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 785 g~I~i~D~~t~~~~---~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
+.|++||..+.... ..+.+|...|++++|+|++.+|++++.| .|++||++++.....+.....+...+.++.| ++
T Consensus 201 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~ 279 (299)
T d1nr0a2 201 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LN 279 (299)
T ss_dssp SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CC
T ss_conf 11111111111111111111111111111124666451388828997999989999731489834898896899997-79
Q ss_pred CCEEEEEECCCEEEEEECC
Q ss_conf 9989999849919999899
Q 002471 861 YPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 861 g~~l~s~s~dg~I~iwd~~ 879 (918)
+.+|++++.|+.|++||+.
T Consensus 280 ~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 280 ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTEEEEEETTSCEEEEECC
T ss_pred CCEEEEEECCCEEEEEECC
T ss_conf 8999999289979999444
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=8.4e-33 Score=220.11 Aligned_cols=308 Identities=9% Similarity=-0.029 Sum_probs=225.0
Q ss_pred CCCEEEEC-CCCEEEC--CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 66189973-8980211--69972673888205430000112688767545510158999878888543245685303544
Q 002471 556 KPLMMFGT-DGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 556 k~~~~fs~-dg~~~~~--~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~ 632 (918)
+-..-||| ||+.++. .+.+.+||...+.. .
T Consensus 5 ~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~-----------------------------------------------~ 37 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYV-----------------------------------------------L 37 (360)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECTTSSBE-----------------------------------------------E
T ss_pred HHCCCCCCCCCCEEEEEECCEEEEEECCCCCE-----------------------------------------------E
T ss_conf 10051468899999999899699998999948-----------------------------------------------9
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 6306999858999916999999996899--39999889982346741379876999998999989998489809999579
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 633 ~l~~H~~~V~~i~fspdg~~Latgs~Dg--~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~ 710 (918)
.+ +|...|.+++|+|||++|++++.+. .|++||+++++ ...+..|...|.+++|+|++++|++++.++.+++|++.
T Consensus 38 ~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 115 (360)
T d1k32a3 38 KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 115 (360)
T ss_dssp EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EC-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC-EEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCC
T ss_conf 91-69998888999899999999992899899999899994-88750897127741211454321000111110000012
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEE---------ECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEE
Q ss_conf 99954588515788736999738999099998---------1799299997579904578526--811899912999799
Q 002471 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSC---------DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYL 779 (918)
Q Consensus 711 ~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sg---------s~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll 779 (918)
+ +.....+..+...+.+++|+|++..++++. ..++.+++|++.+++....... ....+.|++++..++
T Consensus 116 ~-~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 194 (360)
T d1k32a3 116 T-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 194 (360)
T ss_dssp T-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred C-CCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 2-210000001355202301213225665212331211000256542663045571353035432211001257799999
Q ss_pred EEECCCEEEEEECCCCEE-------EEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEECCC
Q ss_conf 997499199997899608-------99950799893799992999999999599----3999988989986237983048
Q 002471 780 AAAAENVVSILDAETQAC-------RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~-------~~~l~~h~~~I~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
+++.++.+.+|+...... ...+..+...+..+.|++++..++++..+ ..++|.+.... .....+..+
T Consensus 195 ~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 272 (360)
T d1k32a3 195 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMIIPL 272 (360)
T ss_dssp EEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEEEEC
T ss_pred EEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCC--CCEEEEEEC
T ss_conf 995998557533354402320364117985246960120687776715531136526654001012476--752675413
Q ss_pred CCCEEEEEEECCC---CEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9953999992799---989999849919999899991899816679768999947999999996698399939
Q 002471 849 GNKFHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 849 ~~~i~~i~~sp~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
...+..+.+...+ .+++.++.++.|++||+.+++...+. +.|.+++|+|||++|++++.||.|++|+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC---CCCCEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 898569999735997069996489987999979997498864---8868799999898999997899499999
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-30 Score=205.07 Aligned_cols=209 Identities=16% Similarity=0.275 Sum_probs=149.6
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEC--CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEE
Q ss_conf 354463069998589999169999999968--993999988998234674137987699999899998-99984898099
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVR 705 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~--Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~-Lasgs~Dg~I~ 705 (918)
.....+..|.+.|.+++|++++++|++++. ++.+++|+.++++.+..+.+|...|++++|++++.+ +++++.|+.|+
T Consensus 106 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~ 185 (325)
T d1pgua1 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185 (325)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 02541136567377999899988220100124404788850233110012001234321111234320688862111221
Q ss_pred EEECCCCCCEEEE---ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 9957999954588---5157887369997389990999981799299997579904578526811899912999799997
Q 002471 706 VWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 706 Iwdl~~~~~~~~~---~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~ 782 (918)
+|+... ...... ...|...|++++|+|++..++++++.|+.|++||+++++++..+.++..
T Consensus 186 ~~d~~~-~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~--------------- 249 (325)
T d1pgua1 186 FYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--------------- 249 (325)
T ss_dssp EEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB---------------
T ss_pred CCCCCC-CCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCC---------------
T ss_conf 111221-1000000001577775277630345310000112332101343001222111111111---------------
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCC--EE--EEEE
Q ss_conf 49919999789960899950799893799992999999999599-3999988989986237983048995--39--9999
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FH--SCVF 857 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~--i~--~i~~ 857 (918)
.+...+.++.| +++.+|++++.| .|+|||++++ .++..+..+... +. ++.+
T Consensus 250 --------------------~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 305 (325)
T d1pgua1 250 --------------------PVQGGIFALSW-LDSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVA 305 (325)
T ss_dssp --------------------CCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEE
T ss_pred --------------------CCCCCEEEEEC-CCCCEEEEEECCCEEEEEECCCC---CEEEEEEECCCCCCCEEEEEEE
T ss_conf --------------------11110000003-68999999958993999999999---7889999548740676999998
Q ss_pred ECCCCEEEEEECCCEEEEEEC
Q ss_conf 279998999984991999989
Q 002471 858 HPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~iwd~ 878 (918)
.+ ..+|++++.|+.|++||+
T Consensus 306 ~~-~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 306 TG-NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EE-TTEEEEEETTSCEEEEET
T ss_pred CC-CCEEEEEECCCEEEEEEC
T ss_conf 89-999999979999999979
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-29 Score=199.19 Aligned_cols=262 Identities=20% Similarity=0.366 Sum_probs=188.5
Q ss_pred EEECCCCEEEC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 99738980211---699726738882054300001126887675455101589998788885432456853035446306
Q 002471 560 MFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRA 636 (918)
Q Consensus 560 ~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l~~ 636 (918)
+++++|.++++ ++.++|||+.+++ ++.++.+
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~----------------------------------------------~~~~~~~ 55 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGK----------------------------------------------CLRTLVG 55 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCC----------------------------------------------EEEECCC
T ss_pred EEEECCCEEEEEECCCEEEEEECCCCC----------------------------------------------EEEEEEC
T ss_conf 999789999999189909999899997----------------------------------------------9999948
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC----------------------------------------EEEEE
Q ss_conf 99985899991699999999689939999889982----------------------------------------34674
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----------------------------------------SKTNL 676 (918)
Q Consensus 637 H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~----------------------------------------~~~~l 676 (918)
|.+.|.+++|+++ +|++++.|+.+++|+..... ....+
T Consensus 56 h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 133 (342)
T d2ovrb2 56 HTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 133 (342)
T ss_dssp CSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEE
T ss_conf 8999899994798--63210000011111111000000012333047652024652212344403787403556300111
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 13798769999989999899984898099995799995458851578873699973899909999817992999975799
Q 002471 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 677 ~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~ 756 (918)
........ .+......+++++.|+.|++||... ...+..+.+|...+..+.+. +. .+++++.||.|++||++..
T Consensus 134 ~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~ 207 (342)
T d2ovrb2 134 MGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETG 207 (342)
T ss_dssp ECCSSCEE--EEEECSSCEEEEETTSCEEEEEGGG-TEEEEEECCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTC
T ss_pred ECCCCCCE--EECCCCCEEEEECCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCC--CC-EEEEEECCCEEEEEECCCC
T ss_conf 00111100--0001333024335898699952523-43667872754442100689--99-9999958993999525565
Q ss_pred EEEEEEECCC-EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECC---CCCCEEEEEECCCCCEEEEEECC-EEEEE
Q ss_conf 0457852681-1899912999799997499199997899608999507---99893799992999999999599-39999
Q 002471 757 SCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVW 831 (918)
Q Consensus 757 ~~~~~~~~~~-~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~---h~~~I~si~~spdg~~Las~s~d-~I~iw 831 (918)
+++..+..+. ....+.++++.+++++.|+.|++||....+....+.. |...+.++.++ ++++++++.| .|++|
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iw 285 (342)
T d2ovrb2 208 NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 285 (342)
T ss_dssp CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred EEEEEECCCCCCEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEE
T ss_conf 36567416653205770689999997489889998655442211122100011010000137--9844999089989999
Q ss_pred ECCCCCCCCEEEEE-----CCCCCCEEEEEEECCCCEEEEEECCC----EEEEEECCC
Q ss_conf 88989986237983-----04899539999927999899998499----199998999
Q 002471 832 TVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSE 880 (918)
Q Consensus 832 dl~s~~~~~~i~~~-----~~~~~~i~~i~~sp~g~~l~s~s~dg----~I~iwd~~~ 880 (918)
|++++ +++..+ ..|...|++++|+|++.++++++.|| .|++||+..
T Consensus 286 d~~tg---~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 286 DLKTG---EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ETTTC---CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ECCCC---CEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 99999---79899862347898897899998799989999968999704899993899
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.7e-27 Score=186.39 Aligned_cols=266 Identities=21% Similarity=0.404 Sum_probs=211.2
Q ss_pred CCCCEEEECCCCEEEC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9661899738980211---6997267388820543000011268876754551015899987888854324568530354
Q 002471 555 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 631 (918)
Q Consensus 555 ~k~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~ 631 (918)
.+.+.++++||.++++ ++.++|||+.++ +++
T Consensus 15 ~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~----------------------------------------------~~~ 48 (293)
T d1p22a2 15 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL----------------------------------------------ECK 48 (293)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSC----------------------------------------------CEE
T ss_pred CCCEEEEEECCCEEEEEECCCEEEEEECCCC----------------------------------------------CEE
T ss_conf 9988999876999999928993999999999----------------------------------------------199
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 46306999858999916999999996899399998899823467413798769999989999899984898099995799
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 632 ~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~ 711 (918)
.++++|.+.|+|++| ++++|++|+.|+.|++|++..+........+.....+ +......++++..++.+++|+...
T Consensus 49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 124 (293)
T d1p22a2 49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMAS 124 (293)
T ss_dssp EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEEEECSS
T ss_pred EEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCEEEEECCC
T ss_conf 999267787763423--6300210011101100000246410011111100001--111110000013566306861344
Q ss_pred CCC--EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEE-EEEECCCCEEEEEECCCEEE
Q ss_conf 995--458851578873699973899909999817992999975799045785268118-99912999799997499199
Q 002471 712 PGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-MRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 712 ~~~--~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~-i~~sp~~~~ll~~~~dg~I~ 788 (918)
... ....+..|...|.++.+.+. .+++++.|+.|++||+++.+++..+.+.... ..+.+.+..+++++.|+.|+
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 201 (293)
T d1p22a2 125 PTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 201 (293)
T ss_dssp SSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCC---CCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf 5444212100011354311000002---2011069986041007888388997155445322168987588765899899
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCC------CCCCEEEEECCCCCCEEEEEEECCC
Q ss_conf 99789960899950799893799992999999999599-3999988989------9862379830489953999992799
Q 002471 789 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~------~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
+||+++...+..+.++...+.. +.+++.+|++++.| .|++||+... ....++..+..|...|.+++|+ +
T Consensus 202 i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~ 277 (293)
T d1p22a2 202 LWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--E 277 (293)
T ss_dssp EEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--S
T ss_pred EEECCCCEEEEEECCCCEEEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--C
T ss_conf 9866556146652143100000--14541079998679979999888886444567754557845889988999971--9
Q ss_pred CEEEEEECCCEEEEEE
Q ss_conf 9899998499199998
Q 002471 862 PSLLVIGCYQSLELWN 877 (918)
Q Consensus 862 ~~l~s~s~dg~I~iwd 877 (918)
.+|++++.|+.|++||
T Consensus 278 ~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 278 FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEECCSSSEEEEEC
T ss_pred CEEEEEECCCEEEEEC
T ss_conf 9999992299899959
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2.1e-29 Score=198.52 Aligned_cols=290 Identities=10% Similarity=0.074 Sum_probs=201.2
Q ss_pred CCCCEEEECCCCEEEC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9661899738980211---6997267388820543000011268876754551015899987888854324568530354
Q 002471 555 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 631 (918)
Q Consensus 555 ~k~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~ 631 (918)
....+.|+|++.++++ ++.++|||+..... . ...
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~------------------------------------------~-~~~ 49 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------------------------------N-VDL 49 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------------------------------E-EEE
T ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCCCC------------------------------------------C-EEE
T ss_conf 788899958999999997999299997569986------------------------------------------3-689
Q ss_pred EEEECCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCEEEEECCCCC-CEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 463069998589999169-99999996899399998899823467413798-7699999899998999848980999957
Q 002471 632 NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 632 ~~l~~H~~~V~~i~fspd-g~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~-~V~~i~fspdg~~Lasgs~Dg~I~Iwdl 709 (918)
....+|.+.|.|++|+++ +.+|++|+.|+.|++|++...........+.. ......+.++...+++++.|+.+++||+
T Consensus 50 ~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~ 129 (342)
T d1yfqa_ 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred EEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 88558999889999958999789981265311454204432000001111111111111111111111012221110202
Q ss_pred CCCCCEE---EEECCC--CCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE------CCCEEEEEE-CCCCE
Q ss_conf 9999545---885157--88736999738999099998179929999757990457852------681189991-29997
Q 002471 710 DNPGYSL---RTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------GGTAQMRFQ-PHLGR 777 (918)
Q Consensus 710 ~~~~~~~---~~~~~h--~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~------~~~~~i~~s-p~~~~ 777 (918)
+...... .....+ ......+.+.+.+. .+++++.|+.|++|++.......... .......+. .+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T d1yfqa_ 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp HHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred CCCCCCEEEECCCCCCCCCCEEEEEEEECCCC-CEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCE
T ss_conf 34443302300024300120000010001687-02465179847887605676341112102542210146763699987
Q ss_pred EEEEECCCEEEEEECCCCEE---------EE------EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCE
Q ss_conf 99997499199997899608---------99------950799893799992999999999599-399998898998623
Q 002471 778 YLAAAAENVVSILDAETQAC---------RL------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 778 ll~~~~dg~I~i~D~~t~~~---------~~------~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~ 841 (918)
+++++.|+.+.+|+...... .. ....|...|++++|+|++.+|++++.| .|++||+.++ ++
T Consensus 209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~---~~ 285 (342)
T d1yfqa_ 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KK 285 (342)
T ss_dssp EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EE
T ss_pred EEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCC---CE
T ss_conf 886548995999980598640111235125655531477762354315996698447999879998999999989---49
Q ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEE
Q ss_conf 798304899539999927999899998499199998999918998166797689
Q 002471 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 895 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~ 895 (918)
+..+.. ......++|++++..+++++.|+.+++|...... +..|...|..
T Consensus 286 l~~~~~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~---~~~~~~~i~~ 335 (342)
T d1yfqa_ 286 IKNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT---IELNASSIYI 335 (342)
T ss_dssp EEECCC-CSSSEEEEEEECSSEEEEEEECTHHHHCSSSCTT---SCCCCCEEEE
T ss_pred EEEECC-CCCCEEEEEEECCCEEEEEECCCCEEEEEEECCC---CCCCCCEEEE
T ss_conf 887058-9998799999479999999919927883012787---6689986999
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2e-29 Score=198.66 Aligned_cols=214 Identities=18% Similarity=0.228 Sum_probs=160.7
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEE----------CCCCCCEEEEEECCC-----CCEEEEEECCCEEEEEECCCCC
Q ss_conf 9999999968993999988998234674----------137987699999899-----9989998489809999579999
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNL----------EEHSSLITDVRFSPS-----MPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 649 dg~~Latgs~Dg~I~iwd~~~~~~~~~l----------~~h~~~V~~i~fspd-----g~~Lasgs~Dg~I~Iwdl~~~~ 713 (918)
++.++++++.||.|++|++........+ ..+...+..++|.++ +.++++++.||+|++|++....
T Consensus 78 ~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~ 157 (393)
T d1sq9a_ 78 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 157 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred CCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 87689999489919999822898205651245632431157896689998447886542179998389819998740477
Q ss_pred C-----------------EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---------CCCE
Q ss_conf 5-----------------4588515788736999738999099998179929999757990457852---------6811
Q 002471 714 Y-----------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTA 767 (918)
Q Consensus 714 ~-----------------~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~---------~~~~ 767 (918)
. .......+...+.+++|+|++ ++++|+.|+.|++||+.+++.+..+. ..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~ 235 (393)
T d1sq9a_ 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235 (393)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred CCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 534102331032000145100025789867899978999--899993898299986023321100001111124256387
Q ss_pred EEEEECCCCEEEEEECCC---EEEEEECCCCEEEEEEC-------------CCCCCEEEEEECCCCCEEEEEECC-EEEE
Q ss_conf 899912999799997499---19999789960899950-------------799893799992999999999599-3999
Q 002471 768 QMRFQPHLGRYLAAAAEN---VVSILDAETQACRLSLQ-------------GHTKPIDSVCWDPSGELLASVSED-SVRV 830 (918)
Q Consensus 768 ~i~~sp~~~~ll~~~~dg---~I~i~D~~t~~~~~~l~-------------~h~~~I~si~~spdg~~Las~s~d-~I~i 830 (918)
+++|+|++..+++++.|+ .|++||++++.++..+. +|...|++++|+|++++|++++.| +|++
T Consensus 236 ~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~v 315 (393)
T d1sq9a_ 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 315 (393)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEE
T ss_conf 70046653201124289884210010353213444311566664310232023586660013898880698779998999
Q ss_pred EECCCCCCCCEEEEECCCCCCEE----EEEEECCCCEEEEE
Q ss_conf 98898998623798304899539----99992799989999
Q 002471 831 WTVGSGSEGECVHELSCNGNKFH----SCVFHPTYPSLLVI 867 (918)
Q Consensus 831 wdl~s~~~~~~i~~~~~~~~~i~----~i~~sp~g~~l~s~ 867 (918)
||+.++ .++..+.+|...|. .++|++++..++++
T Consensus 316 Wd~~~g---~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 316 WDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred EECCCC---CEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 999999---79999988687613773489999999999983
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.6e-27 Score=186.55 Aligned_cols=290 Identities=12% Similarity=0.063 Sum_probs=200.1
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-----CCCCCCEEEEEECCCCCEEEEE-EC
Q ss_conf 30354463069998589999169999999968993999988998234674-----1379876999998999989998-48
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-----EEHSSLITDVRFSPSMPRLATS-SF 700 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l-----~~h~~~V~~i~fspdg~~Lasg-s~ 700 (918)
+.+.+.++..|. .+..++|||||++|++++.|++|++||+.+++..... .+|...+.++.|+|||++|+++ ..
T Consensus 51 t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~ 129 (426)
T d1hzua2 51 SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 129 (426)
T ss_dssp TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 995999996899-8038999899999999958998899975688604899986788876458850026889879996358
Q ss_pred CCEEEEEECCCCCCEEEEECCCCCCE-----------EEEEECCCCCEEEEEEECCCCEEEEECCCCEEEE--EE--ECC
Q ss_conf 98099995799995458851578873-----------6999738999099998179929999757990457--85--268
Q 002471 701 DKTVRVWDADNPGYSLRTFMGHSASV-----------MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VF--KGG 765 (918)
Q Consensus 701 Dg~I~Iwdl~~~~~~~~~~~~h~~~V-----------~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~--~~--~~~ 765 (918)
++.+++||..+ ..+...+..+...+ ..+.+++++..++++....+.+.+++........ .. ...
T Consensus 130 ~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (426)
T d1hzua2 130 PPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF 208 (426)
T ss_dssp SSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSS
T ss_pred CCEEEEECCCC-CCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf 97699985776-41257862267773643642788503899878787888852789769999924665204577566775
Q ss_pred CEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECCC--CCCEEEEEECCCCC--EEEE-EECC-EEEEEECCCCC-
Q ss_conf 118999129997999974-991999978996089995079--98937999929999--9999-9599-39999889899-
Q 002471 766 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGE--LLAS-VSED-SVRVWTVGSGS- 837 (918)
Q Consensus 766 ~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h--~~~I~si~~spdg~--~Las-~s~d-~I~iwdl~s~~- 837 (918)
...+.+.+++.+++++.. +..+.+++..+.+.+..+... ........+...+. .++. ...+ .+.+|+.....
T Consensus 209 ~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~ 288 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 288 (426)
T ss_dssp EEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC
T ss_pred CEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCC
T ss_conf 37613778886788642011000000025562788750587444342011006987745774157896598852256652
Q ss_pred ---CCCEEEEECCCCCCEEEEEEECCCCEEEEE-------ECCCEEEEEECCCCCEE-EE---------CCCCCCEEEEE
Q ss_conf ---862379830489953999992799989999-------84991999989999189-98---------16679768999
Q 002471 838 ---EGECVHELSCNGNKFHSCVFHPTYPSLLVI-------GCYQSLELWNMSENKTM-TL---------TAHEGLIAALA 897 (918)
Q Consensus 838 ---~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~-------s~dg~I~iwd~~~~~~~-~~---------~~h~~~V~~la 897 (918)
...+...+..|...+..++|+|++.+|++. ..+++|++||+.+++.. ++ ..+...|..++
T Consensus 289 ~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~ 368 (426)
T d1hzua2 289 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 368 (426)
T ss_dssp TTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE
T ss_pred CCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEE
T ss_conf 03302586898668876367874899861888506798802288799998987876708950211025677885189879
Q ss_pred EECCCCEEEEE-----ECCCCEEEEC
Q ss_conf 94799999999-----6698399939
Q 002471 898 VSTETGYVASA-----SHDKFVKLWK 918 (918)
Q Consensus 898 ~spdg~~Lasg-----s~Dg~I~iWd 918 (918)
|+|||++|+.. +.||.|+|||
T Consensus 369 fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 369 YNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp ECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred ECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 99999999999724888898299999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=3.5e-25 Score=171.60 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=185.5
Q ss_pred CCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCCEE
Q ss_conf 9858999916999999-99689939999889982346741379876999998999989998-489809999579999545
Q 002471 639 SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 639 ~~V~~i~fspdg~~La-tgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~I~Iwdl~~~~~~~ 716 (918)
..+..++|+|||++|+ +++.++.|++||+.+++.+.++..+.. +..+.|++++..++++ ..++.+++|+..+ +...
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVA 109 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCEEEECCCCC-CEEE
T ss_conf 98369999289899999978999899999998941032000246-431100011111111111110011001243-0243
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEECC-CEEEEEECC
Q ss_conf 885157887369997389990999981799299997579904578526--81189991299979999749-919999789
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-NVVSILDAE 793 (918)
Q Consensus 717 ~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~d-g~I~i~D~~ 793 (918)
..+. +...+.+++|+|++..+++++..++.+.+|+..+......+.. ....+.+.+++..++++..+ +.+.+++..
T Consensus 110 ~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 110 GTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp EEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EECC-CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 2024-444423787605897155420111100110001463035315678842888604654013101211111111111
Q ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEEEC---C-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEE-EE
Q ss_conf 96089995079989379999299999999959---9-3999988989986237983048995399999279998999-98
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV-IG 868 (918)
Q Consensus 794 t~~~~~~l~~h~~~I~si~~spdg~~Las~s~---d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s-~s 868 (918)
.......+.. ...+..++|++++..++++.. + .|++||+.++ +++..+.. ...+..++|+|++++|++ ++
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~va~spdg~~l~va~~ 263 (301)
T d1l0qa2 189 TNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIPV-GPDPAGIAVTPDGKKVYVALS 263 (301)
T ss_dssp TTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEEC-CSSEEEEEECTTSSEEEEEET
T ss_pred CEEEEECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCC---EEEEEECC-CCCEEEEEEECCCCEEEEEEC
T ss_conf 0001110133-577503110111101111002100002323656998---19999848-998779999189899999989
Q ss_pred CCCEEEEEECCCCCEEE
Q ss_conf 49919999899991899
Q 002471 869 CYQSLELWNMSENKTMT 885 (918)
Q Consensus 869 ~dg~I~iwd~~~~~~~~ 885 (918)
.++.|++||+.+++++.
T Consensus 264 ~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 264 FCNTVSVIDTATNTITA 280 (301)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCEEEE
T ss_conf 99969999999995999
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=4.9e-28 Score=189.77 Aligned_cols=288 Identities=11% Similarity=0.038 Sum_probs=195.6
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE--EEE---CCCCCCEEEEEECCCCCEE-EEEEC
Q ss_conf 30354463069998589999169999999968993999988998234--674---1379876999998999989-99848
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL---EEHSSLITDVRFSPSMPRL-ATSSF 700 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~--~~l---~~h~~~V~~i~fspdg~~L-asgs~ 700 (918)
+.+.+..+..+. .+..++|||||++|++++.|++|++||+.+++.. ..+ .+|...+.+..|+|||++| ++++.
T Consensus 51 t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~ 129 (432)
T d1qksa2 51 TYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW 129 (432)
T ss_dssp TCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CCCEEEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCC
T ss_conf 983999973799-7137998899999999828999789981089812889984488987769843218888889998178
Q ss_pred CCEEEEEECCCCCCEEEEECC-----------CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE--EE--CC
Q ss_conf 980999957999954588515-----------7887369997389990999981799299997579904578--52--68
Q 002471 701 DKTVRVWDADNPGYSLRTFMG-----------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GG 765 (918)
Q Consensus 701 Dg~I~Iwdl~~~~~~~~~~~~-----------h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~--~~--~~ 765 (918)
+++|+|||..+ +.++..+.. +......+.+++++..++++...++.|.+|+....+.... +. ..
T Consensus 130 ~~~v~i~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~ 208 (432)
T d1qksa2 130 PPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208 (432)
T ss_dssp TTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred CCEEEEEECCC-CCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCC
T ss_conf 98279990765-54225402477643522016888505899878999899998168829999843787522799833675
Q ss_pred CEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECC-----CCCCEEEEEECCCCCEEEEEEC-C-EEEEEECCCCC
Q ss_conf 118999129997999974-99199997899608999507-----9989379999299999999959-9-39999889899
Q 002471 766 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGS 837 (918)
Q Consensus 766 ~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~-----h~~~I~si~~spdg~~Las~s~-d-~I~iwdl~s~~ 837 (918)
...+.|+|++.++++++. ++.+.++|..+.+.+..+.. +........+...+...++... + .|.+|......
T Consensus 209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~ 288 (432)
T d1qksa2 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288 (432)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred CCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCC
T ss_conf 42653889887999951666367776144526888721486224567664101489883102135688358762456655
Q ss_pred C----CCEEEEECCCCCCEEEEEE------------------------ECCCCEEEEEECCCEEEEEECCCCCEEEECCC
Q ss_conf 8----6237983048995399999------------------------27999899998499199998999918998166
Q 002471 838 E----GECVHELSCNGNKFHSCVF------------------------HPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 889 (918)
Q Consensus 838 ~----~~~i~~~~~~~~~i~~i~~------------------------sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h 889 (918)
. ......+.........+.. .|++..+++++.|+.+++|++.++. .+..|
T Consensus 289 ~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~--~l~~~ 366 (432)
T d1qksa2 289 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA--GITEG 366 (432)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH--TCCSS
T ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCCCCCCEEECCCCCCC--CCCCC
T ss_conf 5465657779988689976888726886410211267888770359999962461045567844863343444--45789
Q ss_pred CCCEEEEEEECCCCEEEEEE-----CCCCEEEEC
Q ss_conf 79768999947999999996-----698399939
Q 002471 890 EGLIAALAVSTETGYVASAS-----HDKFVKLWK 918 (918)
Q Consensus 890 ~~~V~~la~spdg~~Lasgs-----~Dg~I~iWd 918 (918)
...|..++|+|||++|+.+. .+|.|+|||
T Consensus 367 ~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 367 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 9868976798999999999704888888689999
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-26 Score=181.22 Aligned_cols=228 Identities=11% Similarity=0.161 Sum_probs=179.4
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 06999858999916999999996899399998899823467413798769999989999899984898099995799995
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 635 ~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~ 714 (918)
++|...|.+++|+++. .+++++.|++|++|++...+ ....+.++.+.+++..++++ .++.+.+|+..+ +.
T Consensus 43 ~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 112 (287)
T d1pgua2 43 QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFT-GD 112 (287)
T ss_dssp CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTT-CC
T ss_pred CCCCCCEEEEEECCCC-EEEEEEECCCCCCCCCCCCC-------CCCCEEEEEECCCCCEEEEE-ECCCCEEEECCC-EE
T ss_conf 8877878999965997-28988610122211111111-------12210146641678569996-033210000110-03
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----CCCEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 4588515788736999738999099998179929999757990457852----681189991299979999749919999
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 715 ~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----~~~~~i~~sp~~~~ll~~~~dg~I~i~ 790 (918)
.+..+.. ...+. ++++++..+++++..++.|++|++........+. ..+.+++|++++.++++++.++.|++|
T Consensus 113 ~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~ 189 (287)
T d1pgua2 113 IIKSVRL-NSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189 (287)
T ss_dssp EEEEEEC-SSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEECCC-CCEEE--EEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 5431012-22035--65214751110002210002100012210001210247853699951676521101111110000
Q ss_pred ECCCCEEEEE-ECCCCCCEEEEEECCC----------CCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEE
Q ss_conf 7899608999-5079989379999299----------9999999599-39999889899862379830489953999992
Q 002471 791 DAETQACRLS-LQGHTKPIDSVCWDPS----------GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 791 D~~t~~~~~~-l~~h~~~I~si~~spd----------g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
|..++..... +.+|...|.+++|+|. +.+|++++.| .|++||++.. ...+..+..|...|.++.|+
T Consensus 190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~--~~~~~~~~~h~~~V~~v~~~ 267 (287)
T d1pgua2 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNLLWE 267 (287)
T ss_dssp ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT--TCCEEETTSSTTCEEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC--CEEEEEECCCCCCEEEEEEC
T ss_conf 0023321100011111111000001365410012678870276649995999888999--75899927878985899998
Q ss_pred CCCCEEEEEECCCEEEEEEC
Q ss_conf 79998999984991999989
Q 002471 859 PTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~iwd~ 878 (918)
+++ .|++++.|+.|++|++
T Consensus 268 ~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETTSCEEEEEE
T ss_pred CCC-EEEEEECCCEEEEEEE
T ss_conf 999-8999979992999997
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.95 E-value=2.2e-23 Score=160.22 Aligned_cols=258 Identities=12% Similarity=0.134 Sum_probs=209.2
Q ss_pred EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 99996899399998899823467413798769999989999899-98489809999579999545885157887369997
Q 002471 653 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 731 (918)
Q Consensus 653 Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~f 731 (918)
+++++.|++|.+||+++++.+.++... ..+..++|+||+++|+ +++.++.|++||+.+ ...+..+..+. .+..+.|
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCC-CCCCCCC
T ss_conf 999789998999999999599999889-98369999289899999978999899999998-94103200024-6431100
Q ss_pred CCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf 389990999981799299997579904578526--8118999129997999974-9919999789960899950799893
Q 002471 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPI 808 (918)
Q Consensus 732 sp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~~~I 808 (918)
++++..+++++..++.+.+|+..+++....+.. ....+.+++++..++++.. +..+.+|+..+......+.. ...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSP 160 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSE
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCC-CCCC
T ss_conf 011111111111110011001243024320244444237876058971554201111001100014630353156-7884
Q ss_pred EEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCE
Q ss_conf 799992999999999599--39999889899862379830489953999992799989999849---9199998999918
Q 002471 809 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 883 (918)
Q Consensus 809 ~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~ 883 (918)
..+.+++++..++++..+ .+.+|+.... .....+.. ......++|++++..++++..+ +.|++||..+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEECCCCCCCCCCCCCCE---EEEECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEE
T ss_conf 288860465401310121111111111100---01110133-57750311011110111100210000232365699819
Q ss_pred EEECCCCCCEEEEEEECCCCEE-EEEECCCCEEEEC
Q ss_conf 9981667976899994799999-9996698399939
Q 002471 884 MTLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK 918 (918)
Q Consensus 884 ~~~~~h~~~V~~la~spdg~~L-asgs~Dg~I~iWd 918 (918)
.....+...+.+++|+||+++| ++++.|+.|++||
T Consensus 237 ~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 237 TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 999848998779999189899999989999699999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1.1e-24 Score=168.41 Aligned_cols=322 Identities=11% Similarity=0.052 Sum_probs=216.3
Q ss_pred CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEE-EEECCCCCC----CCCCCCCCCCCCCCCC--CEEEEEEECCCCCEEE
Q ss_conf 69972673888205430000112688767545-510158999----8788885432456853--0354463069998589
Q 002471 571 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDDTD----PRDAGGRGMDVSQGFS--FKEANSVRASTSKVIC 643 (918)
Q Consensus 571 ~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~-~~~~~~~~~----~~~~~~~~~d~~~~~s--~~~~~~l~~H~~~V~~ 643 (918)
++.++|||..++++...+.. + ..+. ..+++|+.. ..+...+.|+...+-. ...+....+|.+.+.+
T Consensus 41 dg~v~vwD~~t~~~~~~l~~----g---~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s 113 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDT----G---YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113 (426)
T ss_dssp TTEEEEEETTTCSEEEEEEC----C---SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEC----C---CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEE
T ss_conf 99799999999959999968----9---9803899989999999995899889997568860489998678887645885
Q ss_pred EEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCC-----------CEEEEEECCCCCEEEEEEC-CCEEEEEECC
Q ss_conf 9991699999999-6899399998899823467413798-----------7699999899998999848-9809999579
Q 002471 644 CHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSS-----------LITDVRFSPSMPRLATSSF-DKTVRVWDAD 710 (918)
Q Consensus 644 i~fspdg~~Latg-s~Dg~I~iwd~~~~~~~~~l~~h~~-----------~V~~i~fspdg~~Lasgs~-Dg~I~Iwdl~ 710 (918)
++|+|||++|+++ ..++.+++||..++.++..+..+.. ....+.+++++..++.... .+.+.+++..
T Consensus 114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~ 193 (426)
T d1hzua2 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193 (426)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 00268898799963589769998577641257862267773643642788503899878787888852789769999924
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-----CEEEEEECCCC-EEEEEE--
Q ss_conf 9995458851578873699973899909999817992999975799045785268-----11899912999-799997--
Q 002471 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLG-RYLAAA-- 782 (918)
Q Consensus 711 ~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~-----~~~i~~sp~~~-~ll~~~-- 782 (918)
...........+...+..+.|.|++..++++...+..+.+|+..+++.+..+... .....+..... ...+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (426)
T d1hzua2 194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273 (426)
T ss_dssp SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred CCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCC
T ss_conf 66520457756677537613778886788642011000000025562788750587444342011006987745774157
Q ss_pred CCCEEEEEECCC-------CEEEEEECCCCCCEEEEEECCCCCEEEE-------EECC-EEEEEECCCCCCCCEEEE---
Q ss_conf 499199997899-------6089995079989379999299999999-------9599-399998898998623798---
Q 002471 783 AENVVSILDAET-------QACRLSLQGHTKPIDSVCWDPSGELLAS-------VSED-SVRVWTVGSGSEGECVHE--- 844 (918)
Q Consensus 783 ~dg~I~i~D~~t-------~~~~~~l~~h~~~I~si~~spdg~~Las-------~s~d-~I~iwdl~s~~~~~~i~~--- 844 (918)
.++.+.+|+... .+....+.+|...+..++|+|++++|++ +..+ +|+|||+.+++....+..
T Consensus 274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~ 353 (426)
T d1hzua2 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 353 (426)
T ss_dssp TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCH
T ss_conf 89659885225665203302586898668876367874899861888506798802288799998987876708950211
Q ss_pred ---ECCCCCCEEEEEEECCCCEEEEEE-----CCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEE
Q ss_conf ---304899539999927999899998-----4991999989999189-981667976899994799999
Q 002471 845 ---LSCNGNKFHSCVFHPTYPSLLVIG-----CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 905 (918)
Q Consensus 845 ---~~~~~~~i~~i~~sp~g~~l~s~s-----~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~spdg~~L 905 (918)
+..+...+..++|+|||+++++.+ .++.|+|||..+.++. .+.++. .++|+|+|.
T Consensus 354 ~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 354 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred HCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEEE
T ss_conf 0256778851898799999999999972488889829999999873899987898------419995575
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=3.1e-26 Score=178.34 Aligned_cols=279 Identities=11% Similarity=0.070 Sum_probs=196.3
Q ss_pred CCCEEEECCCCEEECCC-----CCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 66189973898021169-----9726738882054300001126887675455101589998788885432456853035
Q 002471 556 KPLMMFGTDGAGTLTSP-----SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (918)
Q Consensus 556 k~~~~fs~dg~~~~~~~-----~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~ 630 (918)
...+.|+|||..++..+ .+.+||...++
T Consensus 45 v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~----------------------------------------------- 77 (360)
T d1k32a3 45 IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK----------------------------------------------- 77 (360)
T ss_dssp EEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----------------------------------------------
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCC-----------------------------------------------
T ss_conf 888999899999999992899899999899994-----------------------------------------------
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------C
Q ss_conf 446306999858999916999999996899399998899823467413798769999989999899984----------8
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------F 700 (918)
Q Consensus 631 ~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~ 700 (918)
...+..|...|.+++|+||+++|++++.++.+++|++.+.+....+..+...+.+++|+|++++|+.+. .
T Consensus 78 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 157 (360)
T d1k32a3 78 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157 (360)
T ss_dssp EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred EEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECC
T ss_conf 88750897127741211454321000111110000012221000000135520230121322566521233121100025
Q ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----------CCCEEEE
Q ss_conf 980999957999954588515788736999738999099998179929999757990457852----------6811899
Q 002471 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMR 770 (918)
Q Consensus 701 Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----------~~~~~i~ 770 (918)
++.+++|++.+ +. ...+..+...+.++.|+|++..+ ++++.++.+++|+........... .....+.
T Consensus 158 ~~~~~v~d~~~-~~-~~~~~~~~~~~~~~~~spdg~~l-~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T d1k32a3 158 MQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234 (360)
T ss_dssp EEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred CCCEEEECCCC-CC-EEEECCCCCCCCCCCCCCCCCEE-EEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCE
T ss_conf 65426630455-71-35303543221100125779999-99959985575333544023203641179852469601206
Q ss_pred EECCCCEEEEEECC-----CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCC---EEEEEECC-EEEEEECCCCCCCCE
Q ss_conf 91299979999749-----9199997899608999507998937999929999---99999599-399998898998623
Q 002471 771 FQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 771 ~sp~~~~ll~~~~d-----g~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~---~Las~s~d-~I~iwdl~s~~~~~~ 841 (918)
+++++..+..+..+ ..+..++...+... .+..+...+..+.+...+. ++++++.+ .|++||+.+++ .
T Consensus 235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~ 310 (360)
T d1k32a3 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR-MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---V 310 (360)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---E
T ss_pred ECCCCCCCCCCCEEECCCCCCEEECCCCCCCEE-EEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCE---E
T ss_conf 877767155311365266540010124767526-754138985699997359970699964899879999799974---9
Q ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCC
Q ss_conf 7983048995399999279998999984991999989999189-98166797
Q 002471 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL 892 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~ 892 (918)
..+ ...+..++|+||+++|++++.||.|++||+.+++.. ++..+..+
T Consensus 311 -~~~---~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~ 358 (360)
T d1k32a3 311 -TEV---KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358 (360)
T ss_dssp -EEE---EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred -EEE---CCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCC
T ss_conf -886---488687999998989999978994999999999854599841622
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=7.1e-24 Score=163.28 Aligned_cols=273 Identities=10% Similarity=0.032 Sum_probs=169.6
Q ss_pred CCCCCCCCCCCCC--CCEEEEEEECCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEECC-----------C
Q ss_conf 8888543245685--303544630699985899991699999-9996899399998899823467413-----------7
Q 002471 614 DAGGRGMDVSQGF--SFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEE-----------H 679 (918)
Q Consensus 614 ~~~~~~~d~~~~~--s~~~~~~l~~H~~~V~~i~fspdg~~L-atgs~Dg~I~iwd~~~~~~~~~l~~-----------h 679 (918)
+...+.|+...+- ...++....+|.+.+.+..|+|||++| +++..+++|+|||..+++.+..+.. +
T Consensus 82 dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~ 161 (432)
T d1qksa2 82 DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP 161 (432)
T ss_dssp TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred CCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCC
T ss_conf 99978998108981288998448898776984321888888999817898279990765542254024776435220168
Q ss_pred CCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEE
Q ss_conf 98769999989999899-98489809999579999545885157887369997389990999981799299997579904
Q 002471 680 SSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 680 ~~~V~~i~fspdg~~La-sgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~ 758 (918)
......+.+++++..++ +...++.|.+|+..+..........+...+.++.|+|++.++++++..++.|.++|....+.
T Consensus 162 ~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~ 241 (432)
T d1qksa2 162 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241 (432)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEE
T ss_conf 88505899878999899998168829999843787522799833675426538898879999516663677761445268
Q ss_pred EEEEECCC-------EEEEEECCCCEEEEEEC--CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EE
Q ss_conf 57852681-------18999129997999974--9919999789960899950799893799992999999999599-39
Q 002471 759 TRVFKGGT-------AQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SV 828 (918)
Q Consensus 759 ~~~~~~~~-------~~i~~sp~~~~ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I 828 (918)
+..+..+. ......+..+.+..... ++.|.+|+...... ..+...+....+.+++..+++++.+ .+
T Consensus 242 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----~~~~~~v~~~~~~~~g~~~~~~s~p~~~ 317 (432)
T d1qksa2 242 VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----PDNAWKILDSFPALGGGSLFIKTHPNSQ 317 (432)
T ss_dssp EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----TTTBTSEEEEEECSCSCCCCEECCTTCS
T ss_pred EEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCCC----CCCCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf 887214862245676641014898831021356883587624566555----4656577799886899768887268864
Q ss_pred EEEECCCCC---------------------CCCEEE--------EECCCCCCEEEEEEECCCCEEEEEEC-----CCEEE
Q ss_conf 999889899---------------------862379--------83048995399999279998999984-----99199
Q 002471 829 RVWTVGSGS---------------------EGECVH--------ELSCNGNKFHSCVFHPTYPSLLVIGC-----YQSLE 874 (918)
Q Consensus 829 ~iwdl~s~~---------------------~~~~i~--------~~~~~~~~i~~i~~sp~g~~l~s~s~-----dg~I~ 874 (918)
++|+..+.. ....+. .+..+...+..++|+|||++++++.. ++.|.
T Consensus 318 ~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~ 397 (432)
T d1qksa2 318 YLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALV 397 (432)
T ss_dssp EEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEE
T ss_pred CEEECCCCCCCCCEEEEEEEEECHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEE
T ss_conf 10211267888770359999962461045567844863343444457899868976798999999999704888888689
Q ss_pred EEECCCCCEEEECCCC
Q ss_conf 9989999189981667
Q 002471 875 LWNMSENKTMTLTAHE 890 (918)
Q Consensus 875 iwd~~~~~~~~~~~h~ 890 (918)
|||..+.++.......
T Consensus 398 i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 398 VVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEETTTTEEEEEECCT
T ss_pred EEECCCCEEEEEECCC
T ss_conf 9999995588684688
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=4.8e-24 Score=164.35 Aligned_cols=238 Identities=11% Similarity=0.097 Sum_probs=150.7
Q ss_pred CCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCC-----CEEEEEECCCCCEEEEEE-----------
Q ss_conf 999858999916999999-996899399998899823467413798-----769999989999899984-----------
Q 002471 637 STSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSS----------- 699 (918)
Q Consensus 637 H~~~V~~i~fspdg~~La-tgs~Dg~I~iwd~~~~~~~~~l~~h~~-----~V~~i~fspdg~~Lasgs----------- 699 (918)
+...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+.. .+..++|+|+++++++++
T Consensus 32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEECC
T ss_conf 89982379999998999999789994999999999298887247773125402548986877579995047762034203
Q ss_pred -CCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC--EEEEEECCC-
Q ss_conf -8980999957999954588515788736999738999099998179929999757990457852681--189991299-
Q 002471 700 -FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--AQMRFQPHL- 775 (918)
Q Consensus 700 -~Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~--~~i~~sp~~- 775 (918)
.+..+.+||..+ ......+. +...+.+++|++++..++ +++ +.+.+||..+++....+.... ....+.+++
T Consensus 112 ~~~~~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (337)
T d1pbyb_ 112 VQPTRVALYDAET-LSRRKAFE-APRQITMLAWARDGSKLY-GLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL 186 (337)
T ss_dssp ECCCEEEEEETTT-TEEEEEEE-CCSSCCCEEECTTSSCEE-EES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred CCCCCEEECCCCC-CEEEEECC-CCCCCEEEEECCCCCEEE-EEC--CCCCEEEEECCCEEEEEECCCCCCCCEECCCCC
T ss_conf 4555212035667-75988414-568721899868888899-971--775056630372788861477543311357763
Q ss_pred -----------------------CEEEEEECCCEEEEEECCCCEEEEE-ECCCCCCEEEEEECCCCCEEEEEECCEEEEE
Q ss_conf -----------------------9799997499199997899608999-5079989379999299999999959939999
Q 002471 776 -----------------------GRYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSEDSVRVW 831 (918)
Q Consensus 776 -----------------------~~ll~~~~dg~I~i~D~~t~~~~~~-l~~h~~~I~si~~spdg~~Las~s~d~I~iw 831 (918)
........++.+.+|+..++..... +..+...+..+.+++++.++++.. +.|++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~ 265 (337)
T d1pbyb_ 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESF 265 (337)
T ss_dssp CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEE
T ss_pred EEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC-CCEEEE
T ss_conf 1401466531246632444103660454036761799986888588898328875058887426613999735-528999
Q ss_pred ECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 88989986237983048995399999279998999984991999989999189
Q 002471 832 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 832 dl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 884 (918)
|+.++ ..+..+.. ...+.+++|+|++++|++++.++.|++||..+.+.+
T Consensus 266 d~~~~---~~~~~~~~-~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 266 DLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 89889---69999748-998899999789999999949992999999987698
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.94 E-value=8.9e-25 Score=169.03 Aligned_cols=266 Identities=9% Similarity=0.029 Sum_probs=123.3
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCCCCEEEEECCC
Q ss_conf 9916999999996899399998899823467413-7987699999899998999-8489809999579999545885157
Q 002471 645 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMGH 722 (918)
Q Consensus 645 ~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~-h~~~V~~i~fspdg~~Las-gs~Dg~I~Iwdl~~~~~~~~~~~~h 722 (918)
+|++++++|++++.|++|.+||+.+++.+.++.. +...+.+++|+||++++++ ++.++.|++||+.+ ++.+..+...
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~~~~~~~~~ 81 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLS 81 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESC
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCC-CEEEEEECCC
T ss_conf 588999699998699979999999998999999489997045999789899999978999399996756-7131231036
Q ss_pred C------CCEEEEEECCCCCEEEEEE-----------ECCCCEEEEECCCCEEEEEEE-----CCCEEEEEECCCCEEEE
Q ss_conf 8------8736999738999099998-----------179929999757990457852-----68118999129997999
Q 002471 723 S------ASVMSLDFHPNKDDLICSC-----------DGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 723 ~------~~V~si~fsp~~~~ll~sg-----------s~Dg~I~iwdi~~~~~~~~~~-----~~~~~i~~sp~~~~ll~ 780 (918)
. ..+..+.|+|++..++++. ..++.+.+|+..+++....+. .....+.+.++ +.+++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLYV 160 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-SCEEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCC-CEEEE
T ss_conf 54345477417999905888899970577521565146762489985256326568873102474399995278-78998
Q ss_pred EECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE--------------------------EEEEECC-EEEEEEC
Q ss_conf 974991999978996089995079989379999299999--------------------------9999599-3999988
Q 002471 781 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL--------------------------LASVSED-SVRVWTV 833 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~--------------------------Las~s~d-~I~iwdl 833 (918)
. ++.+.+|+..+.+.+..+..+.. ...+.++|++.. +++...+ .+.+|++
T Consensus 161 ~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 161 A--GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp E--SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred E--CCCCEEEECCCCCEEEEEECCCC-CCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 4--79626998069978999964898-66237712552899986499816765123111267325754047834999977
Q ss_pred CCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCC
Q ss_conf 98998623798304899539999927999899998499199998999918998166797689999479999999966983
Q 002471 834 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 913 (918)
Q Consensus 834 ~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~ 913 (918)
.++. ........+...+..+.+++++.+++.... +.|++||..+++.+....+...+.+++|+||+++|++++.|+.
T Consensus 238 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~ 314 (346)
T d1jmxb_ 238 KTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314 (346)
T ss_dssp TTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE
T ss_pred CCCC--EEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 7883--687876315660688897179978999429-8389998999939999749997789999689999999948992
Q ss_pred EEEEC
Q ss_conf 99939
Q 002471 914 VKLWK 918 (918)
Q Consensus 914 I~iWd 918 (918)
|++||
T Consensus 315 v~v~D 319 (346)
T d1jmxb_ 315 LAVFN 319 (346)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.93 E-value=3.4e-21 Score=146.22 Aligned_cols=261 Identities=11% Similarity=0.038 Sum_probs=177.6
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCCCE-------EEEEECCC
Q ss_conf 35446306999858999916999999996----------89939999889982346741379876-------99999899
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSSLI-------TDVRFSPS 691 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~i~fspdg~~Latgs----------~Dg~I~iwd~~~~~~~~~l~~h~~~V-------~~i~fspd 691 (918)
+.+.++..+... .++|+|||++|++++ .++.|.+||..+++.+..+..+.... ..+.|+++
T Consensus 58 ~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 135 (373)
T d2madh_ 58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN 135 (373)
T ss_pred CEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEEC
T ss_conf 799999579886--079868999899996057753212453189999777893888972688513685168970899858
Q ss_pred CCEEEEEEC--CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC---
Q ss_conf 998999848--980999957999954588515788736999738999099998179929999757990457852681---
Q 002471 692 MPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--- 766 (918)
Q Consensus 692 g~~Lasgs~--Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~--- 766 (918)
++.+++... ++.+.+|+... ..... +.....++.|++++..++++.+.|+.+.+|+..............
T Consensus 136 g~~~~v~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 210 (373)
T d2madh_ 136 NADLLFFQFAAGPAVGLVVQGG-SSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA 210 (373)
T ss_pred CCCEEEEEECCCCCEEEEECCC-CEEEE----EECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCC
T ss_conf 9937999986987467762368-72899----824520699962899199999479939999747742667886300366
Q ss_pred ------EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEE--ECCCC----------CCEEEEEECCCCCEEE-------
Q ss_conf ------1899912999799997499199997899608999--50799----------8937999929999999-------
Q 002471 767 ------AQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--LQGHT----------KPIDSVCWDPSGELLA------- 821 (918)
Q Consensus 767 ------~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~--l~~h~----------~~I~si~~spdg~~La------- 821 (918)
....+. ..+.++....++.+.+|+......... +..+. .....+++++++..++
T Consensus 211 ~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 289 (373)
T d2madh_ 211 AQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred CCCCEEEEEEEC-CCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 753043458878-9942999258965999976899078977630564757866413674133577149975999548882
Q ss_pred ---EEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEE--EEEECCCEEEEEECCCCCEE-EECCCCCCEE
Q ss_conf ---99599-39999889899862379830489953999992799989--99984991999989999189-9816679768
Q 002471 822 ---SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL--LVIGCYQSLELWNMSENKTM-TLTAHEGLIA 894 (918)
Q Consensus 822 ---s~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l--~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~ 894 (918)
....+ .+.+||..++ +.+..+. +...+..++|+||++.+ ++++.|+.|++||+.+++.+ .+..+.....
T Consensus 290 ~~~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~ 365 (373)
T d2madh_ 290 AWKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQ 365 (373)
T ss_pred EEEEECCCCEEEEEECCCC---CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 4786258986999989999---6989866-89982589999899989999967999299999999989999888898981
Q ss_pred EEEEECC
Q ss_conf 9999479
Q 002471 895 ALAVSTE 901 (918)
Q Consensus 895 ~la~spd 901 (918)
.+++..+
T Consensus 366 ~l~~~~~ 372 (373)
T d2madh_ 366 VLSVMNE 372 (373)
T ss_pred EEEEECC
T ss_conf 8998468
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=2e-21 Score=147.73 Aligned_cols=260 Identities=11% Similarity=0.084 Sum_probs=197.3
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCC--CCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEEEECCCC----
Q ss_conf 99999968993999988998234674137--98769999989999899-984898099995799995458851578----
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHS---- 723 (918)
Q Consensus 651 ~~Latgs~Dg~I~iwd~~~~~~~~~l~~h--~~~V~~i~fspdg~~La-sgs~Dg~I~Iwdl~~~~~~~~~~~~h~---- 723 (918)
++|++++.|++|+|||+.+.+.+.++..+ ...+.+++|+||+++++ +++.++.|++||+.+ ++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCCC
T ss_conf 6999976799899999999949999987788998237999999899999978999499999999-929888724777312
Q ss_pred -CCEEEEEECCCCCEEEEEEE-----------CCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEECCCEEEE
Q ss_conf -87369997389990999981-----------799299997579904578526--8118999129997999974991999
Q 002471 724 -ASVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI 789 (918)
Q Consensus 724 -~~V~si~fsp~~~~ll~sgs-----------~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~dg~I~i 789 (918)
..+..+.|+|+++.++++.. .+..+.+||..++++...+.. ....+.|++++..+++++ +.+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEC--CCCCE
T ss_conf 5402548986877579995047762034203455521203566775988414568721899868888899971--77505
Q ss_pred EECCCCEEEEEECCCCCCEEEEEECCCCC------------------------EEEEEECC-EEEEEECCCCCCCCEEEE
Q ss_conf 97899608999507998937999929999------------------------99999599-399998898998623798
Q 002471 790 LDAETQACRLSLQGHTKPIDSVCWDPSGE------------------------LLASVSED-SVRVWTVGSGSEGECVHE 844 (918)
Q Consensus 790 ~D~~t~~~~~~l~~h~~~I~si~~spdg~------------------------~Las~s~d-~I~iwdl~s~~~~~~i~~ 844 (918)
||..+++....+..+... ....+.+++. .+.....+ .+.+|+..++. .....
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred EEEECCCEEEEEECCCCC-CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCC--EEEEE
T ss_conf 663037278886147754-331135776314014665312466324441036604540367617999868885--88898
Q ss_pred ECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 30489953999992799989999849919999899991899816679768999947999999996698399939
Q 002471 845 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 845 ~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
+..+...+..+.+++++.++++. ++.|++||+.+++.+....+...+.+++|+|+|++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 32887505888742661399973--5528999898896999974899889999978999999994999299999
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2e-20 Score=141.31 Aligned_cols=249 Identities=11% Similarity=0.131 Sum_probs=171.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEC---CCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECC
Q ss_conf 6999858999916999999996-89939999889982346741---37987699999899998999848-9809999579
Q 002471 636 ASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATSSF-DKTVRVWDAD 710 (918)
Q Consensus 636 ~H~~~V~~i~fspdg~~Latgs-~Dg~I~iwd~~~~~~~~~l~---~h~~~V~~i~fspdg~~Lasgs~-Dg~I~Iwdl~ 710 (918)
.|.+.|.+++|+|||++|++++ .|+.|++|++.......++. .+...+..++|+||+++|++++. ++.|.+|+..
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~ 113 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 113 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCEEEECCC
T ss_conf 57998868999589799999977899699999968987079853013699854999959998874205688830220011
Q ss_pred CCCC-EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE-----E----CCCEEEEEECCCCEEEE
Q ss_conf 9995-458851578873699973899909999817992999975799045785-----2----68118999129997999
Q 002471 711 NPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----K----GGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 711 ~~~~-~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~-----~----~~~~~i~~sp~~~~ll~ 780 (918)
.... .......+...+.++.+++++..+++....+..|.+|+.......... . .....+.|++++..++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~ 193 (333)
T d1ri6a_ 114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC 193 (333)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred CCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEEE
T ss_conf 10000001003778531498863010131025655420568973268741001000133403887527999602014786
Q ss_pred EEC-CCEEEEEECCCC----EEEEEEC------CCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEECC
Q ss_conf 974-991999978996----0899950------799893799992999999999599--399998898998623798304
Q 002471 781 AAA-ENVVSILDAETQ----ACRLSLQ------GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC 847 (918)
Q Consensus 781 ~~~-dg~I~i~D~~t~----~~~~~l~------~h~~~I~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~ 847 (918)
... .+...+++.... .....+. ........+++++++++++..... .+.+|++........+.....
T Consensus 194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (333)
T d1ri6a_ 194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 273 (333)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred ECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEEC
T ss_conf 20466721788510355520210022343068776553126899515672055045688278788739997899999967
Q ss_pred CCCCEEEEEEECCCCEEEEEECC-CEEEEE--ECCCCCEE
Q ss_conf 89953999992799989999849-919999--89999189
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGCY-QSLELW--NMSENKTM 884 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~d-g~I~iw--d~~~~~~~ 884 (918)
....+..++|+|+|++|++++.+ +.|.+| |..++++.
T Consensus 274 ~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEE
T ss_conf 8997628999079899999988999399999979999689
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.92 E-value=1.1e-19 Score=136.70 Aligned_cols=279 Identities=10% Similarity=0.031 Sum_probs=197.4
Q ss_pred ECCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------
Q ss_conf 06999858999916999999996-----899399998899823467413798769999989999899984----------
Q 002471 635 RASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS---------- 699 (918)
Q Consensus 635 ~~H~~~V~~i~fspdg~~Latgs-----~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs---------- 699 (918)
..+..++.+++++|||+.+++.. .++.|.+||..+++.+.++..+... .+.|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 56789865630189997899973422578765999989999799999579886--0798689998999960577532124
Q ss_pred CCCEEEEEECCCCCCEEEEECCCCCCE-------EEEEECCCCCEEEEEE-ECCCCEEEEECCCCEEEEEEECCCEEEEE
Q ss_conf 898099995799995458851578873-------6999738999099998-17992999975799045785268118999
Q 002471 700 FDKTVRVWDADNPGYSLRTFMGHSASV-------MSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRF 771 (918)
Q Consensus 700 ~Dg~I~Iwdl~~~~~~~~~~~~h~~~V-------~si~fsp~~~~ll~sg-s~Dg~I~iwdi~~~~~~~~~~~~~~~i~~ 771 (918)
.++.|.+||..+ +..+..+..+.... ..+.|+++++.+++.. ..++.+.+|+....+....... ..++.+
T Consensus 95 ~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 172 (373)
T d2madh_ 95 RTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PTCYHI 172 (373)
T ss_pred CCEEEEEEECCC-CCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEECC-CEEEEE
T ss_conf 531899997778-938889726885136851689708998589937999986987467762368728998245-206999
Q ss_pred ECCCCEE-EEEECCCEEEEEECCCCEEEEEECCC------CCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEE
Q ss_conf 1299979-99974991999978996089995079------9893799992999999999599399998898998623798
Q 002471 772 QPHLGRY-LAAAAENVVSILDAETQACRLSLQGH------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHE 844 (918)
Q Consensus 772 sp~~~~l-l~~~~dg~I~i~D~~t~~~~~~l~~h------~~~I~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~ 844 (918)
++++..+ ++...|+.+.+|+............+ ......+.+.+++.+++....+.+++|+...... ..+..
T Consensus 173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 251 (373)
T d2madh_ 173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAP 251 (373)
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEE-EEEEE
T ss_conf 62899199999479939999747742667886300366753043458878994299925896599997689907-89776
Q ss_pred ECCC----------CCCEEEEEEECCCCEEE----------EEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCE
Q ss_conf 3048----------99539999927999899----------998499199998999918998166797689999479999
Q 002471 845 LSCN----------GNKFHSCVFHPTYPSLL----------VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGY 904 (918)
Q Consensus 845 ~~~~----------~~~i~~i~~sp~g~~l~----------s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~la~spdg~~ 904 (918)
.... ......+.+++++..++ ....++.|.+||..+++.+....+...+.+++|+|||+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~ 331 (373)
T d2madh_ 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP 331 (373)
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCE
T ss_conf 30564757866413674133577149975999548882478625898699998999969898668998258999989998
Q ss_pred --EEEEECCCCEEEEC
Q ss_conf --99996698399939
Q 002471 905 --VASASHDKFVKLWK 918 (918)
Q Consensus 905 --Lasgs~Dg~I~iWd 918 (918)
+++++.|+.|++||
T Consensus 332 ~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 332 DLYALSAGTEVLHIYD 347 (373)
T ss_pred EEEEEECCCCEEEEEE
T ss_conf 9999967999299999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=1.1e-21 Score=149.24 Aligned_cols=275 Identities=10% Similarity=0.043 Sum_probs=191.9
Q ss_pred EEECCCCEEEC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-
Q ss_conf 99738980211---69972673888205430000112688767545510158999878888543245685303544630-
Q 002471 560 MFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR- 635 (918)
Q Consensus 560 ~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l~- 635 (918)
.|+++++++++ ++.+.+||+++++ .+.++.
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~----------------------------------------------~~~t~~~ 36 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDT----------------------------------------------VYKSCVM 36 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTE----------------------------------------------EEEEEEC
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCC----------------------------------------------EEEEEEC
T ss_conf 588999699998699979999999998----------------------------------------------9999994
Q ss_pred CCCCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCCEEEEECCCC------CCEEEEEECCCCCEEEEEE---------
Q ss_conf 69998589999169999999-9689939999889982346741379------8769999989999899984---------
Q 002471 636 ASTSKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSS--------- 699 (918)
Q Consensus 636 ~H~~~V~~i~fspdg~~Lat-gs~Dg~I~iwd~~~~~~~~~l~~h~------~~V~~i~fspdg~~Lasgs--------- 699 (918)
.|...+.+++|+|||+++++ +..++.|++||+.+++.+..+.... ..+..+.|++|++++++++
T Consensus 37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~ 116 (346)
T d1jmxb_ 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116 (346)
T ss_dssp SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 89997045999789899999978999399996756713123103654345477417999905888899970577521565
Q ss_pred ---CCCEEEEEECCCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC--CEEEEEE
Q ss_conf ---898099995799995458851--578873699973899909999817992999975799045785268--1189991
Q 002471 700 ---FDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQ 772 (918)
Q Consensus 700 ---~Dg~I~Iwdl~~~~~~~~~~~--~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~--~~~i~~s 772 (918)
.++.+.+|+..+ +.....+. .....+..+.+.+++ .++++ ++.+.+|++.+++.+..+..+ ...+.++
T Consensus 117 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (346)
T d1jmxb_ 117 YVVKPPRLEVFSTAD-GLEAKPVRTFPMPRQVYLMRAADDG-SLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSA 191 (346)
T ss_dssp EEECCCEEEEEEGGG-GGGBCCSEEEECCSSCCCEEECTTS-CEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred ECCCCCEEEEEECCC-CEEEEEEEEEECCCCEEEEEECCCC-EEEEE---CCCCEEEECCCCCEEEEEECCCCCCCEEEE
T ss_conf 146762489985256-3265688731024743999952787-89984---796269980699789999648986623771
Q ss_pred CCCC--------------------------EEEEEECCCEEEEEECCCCEEEEE-ECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 2999--------------------------799997499199997899608999-5079989379999299999999959
Q 002471 773 PHLG--------------------------RYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 773 p~~~--------------------------~ll~~~~dg~I~i~D~~t~~~~~~-l~~h~~~I~si~~spdg~~Las~s~ 825 (918)
+++. .+.....+..+.+|+..++..... +..+...+..+.+++++.+++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (346)
T d1jmxb_ 192 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL 271 (346)
T ss_dssp CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC
T ss_conf 25528999864998167651231112673257540478349999777883687876315660688897179978999429
Q ss_pred CEEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCC
Q ss_conf 93999988989986237983048995399999279998999984991999989999189-98166
Q 002471 826 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH 889 (918)
Q Consensus 826 d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h 889 (918)
+.|++||..++ +.+..+.. ...+.+++|+||++++++++.++.|++||..+++.+ .+...
T Consensus 272 ~~v~v~d~~~~---~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 272 NRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp SEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECC
T ss_conf 83899989999---39999749-997789999689999999948992999999658797999889
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.2e-19 Score=136.36 Aligned_cols=267 Identities=12% Similarity=0.178 Sum_probs=186.9
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCCEEE--EECCCCCCE
Q ss_conf 9999968993999988998234674--137987699999899998999848-98099995799995458--851578873
Q 002471 652 LLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLR--TFMGHSASV 726 (918)
Q Consensus 652 ~Latgs~Dg~I~iwd~~~~~~~~~l--~~h~~~V~~i~fspdg~~Lasgs~-Dg~I~Iwdl~~~~~~~~--~~~~h~~~V 726 (918)
.+++++.|++|++|++.....+..+ ..+.+.+.+|+|+||+++|++++. |+.|++|++........ ....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99987899938999983999769999975799886899958979999997789969999996898707985301369985
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----CCCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEE-
Q ss_conf 6999738999099998179929999757990457852-----68118999129997999974-9919999789960899-
Q 002471 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL- 799 (918)
Q Consensus 727 ~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~-----~~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~- 799 (918)
..++|+|+++.+++++..++.|.+|+........... .....+.+++++..++++.. +..|.+|+........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEE
T ss_conf 49999599988742056888302200111000000100377853149886301013102565542056897326874100
Q ss_pred -----EECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCC-CEEEEEC------CCCCCEEEEEEECCCCEEE
Q ss_conf -----950799893799992999999999599--3999988989986-2379830------4899539999927999899
Q 002471 800 -----SLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG-ECVHELS------CNGNKFHSCVFHPTYPSLL 865 (918)
Q Consensus 800 -----~l~~h~~~I~si~~spdg~~Las~s~d--~I~iwdl~s~~~~-~~i~~~~------~~~~~i~~i~~sp~g~~l~ 865 (918)
...........+.|++++.+++..... ...+|++...... ....... ........+++++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred EECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEE
T ss_conf 10001334038875279996020147862046672178851035552021002234306877655312689951567205
Q ss_pred EEEC-CCEEEEEECCCCCEE----EECCCCCCEEEEEEECCCCEEEEEE-CCCCEEEEC
Q ss_conf 9984-991999989999189----9816679768999947999999996-698399939
Q 002471 866 VIGC-YQSLELWNMSENKTM----TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 918 (918)
Q Consensus 866 s~s~-dg~I~iwd~~~~~~~----~~~~h~~~V~~la~spdg~~Lasgs-~Dg~I~iWd 918 (918)
+... ++.+.+|++...... ........+.+++|+|||++|++++ .++.|++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 50456882787887399978999999678997628999079899999988999399999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=2.6e-21 Score=146.98 Aligned_cols=263 Identities=9% Similarity=0.037 Sum_probs=165.5
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEECCCC
Q ss_conf 5446306999858999916999999996----------899399998899823467413798-------76999998999
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSM 692 (918)
Q Consensus 630 ~~~~l~~H~~~V~~i~fspdg~~Latgs----------~Dg~I~iwd~~~~~~~~~l~~h~~-------~V~~i~fspdg 692 (918)
.+.++..+. +..++|+|||++|++.+ .|+.|++||+.+++.+..+..+.. ....+.|++++
T Consensus 40 ~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 117 (355)
T d2bbkh_ 40 VIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 117 (355)
T ss_dssp EEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEEECCC--CCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCC
T ss_conf 999998999--985699489999999967776420158999899999999979889805886403117987349993388
Q ss_pred CEEEEEE--CCCEEEEEECCCCCCEEEEECCCCCC-------EEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE
Q ss_conf 9899984--89809999579999545885157887-------36999738999099998179929999757990457852
Q 002471 693 PRLATSS--FDKTVRVWDADNPGYSLRTFMGHSAS-------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 693 ~~Lasgs--~Dg~I~Iwdl~~~~~~~~~~~~h~~~-------V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~ 763 (918)
+++++++ .+..+.+|+..+ +..+..+..+... ...+.+++++..+++....++.+.+++........ .
T Consensus 118 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~--~ 194 (355)
T d2bbkh_ 118 KTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED--E 194 (355)
T ss_dssp SEEEEEECSSSCEEEEEETTT-TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT--S
T ss_pred CEEEEECCCCCCEEEEEECCC-CCEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEE--C
T ss_conf 715773279882045430578-8376677058740473069963699938999899983478737999624333000--1
Q ss_pred CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEE--ECCC----------CCCEEEEEECCCCCEEEEEEC------
Q ss_conf 6811899912999799997499199997899608999--5079----------989379999299999999959------
Q 002471 764 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--LQGH----------TKPIDSVCWDPSGELLASVSE------ 825 (918)
Q Consensus 764 ~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~--l~~h----------~~~I~si~~spdg~~Las~s~------ 825 (918)
..+....+...+..++.+..++.+++|+...+..... ...+ ......+.+++++..++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~ 274 (355)
T d2bbkh_ 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 274 (355)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred CEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEE
T ss_conf 10610215389973887469982999965899079984457844126854330351089998079976788740687126
Q ss_pred -----CEEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCE--EEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEE
Q ss_conf -----93999988989986237983048995399999279998--999984991999989999189-9816679768999
Q 002471 826 -----DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALA 897 (918)
Q Consensus 826 -----d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~--l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~la 897 (918)
+.|.+||..++ +.+..+.. ...+.+++|+|+++. ++++..++.|++||+.+++.+ .+..+.....++.
T Consensus 275 ~~~~~~~v~v~d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~ 350 (355)
T d2bbkh_ 275 HKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 350 (355)
T ss_dssp TTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred ECCCCCEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEE
T ss_conf 5179975999867888---49899668-9987799992899969999978999899999999989999928697965899
Q ss_pred EECC
Q ss_conf 9479
Q 002471 898 VSTE 901 (918)
Q Consensus 898 ~spd 901 (918)
+..+
T Consensus 351 ~~d~ 354 (355)
T d2bbkh_ 351 TADM 354 (355)
T ss_dssp CCCC
T ss_pred ECCC
T ss_conf 6999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=8.9e-19 Score=130.85 Aligned_cols=275 Identities=8% Similarity=0.050 Sum_probs=188.0
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 858999916999999996-----899399998899823467413798769999989999899984----------89809
Q 002471 640 KVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTV 704 (918)
Q Consensus 640 ~V~~i~fspdg~~Latgs-----~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~I 704 (918)
++.-.+.+||++.+++.. .+..|.+||..+++.+.++..+... .++|+||+++|++++ .|+.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 717476589999999982664777671999999999499999899998--569948999999996777642015899989
Q ss_pred EEEECCCCCCEEEEECCCC-------CCEEEEEECCCCCEEEEEE-ECCCCEEEEECCCCEEEEEEECCCEEEEEECCCC
Q ss_conf 9995799995458851578-------8736999738999099998-1799299997579904578526811899912999
Q 002471 705 RVWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 776 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~-------~~V~si~fsp~~~~ll~sg-s~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~ 776 (918)
++||+.+ +..+..+..+. .....+.|++++..+++.. +.+..+.+|+..+++.+..+........+.....
T Consensus 81 ~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d2bbkh_ 81 EVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD 159 (355)
T ss_dssp EEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred EEEECCC-CCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCC
T ss_conf 9999999-979889805886403117987349993388715773279882045430578837667705874047306996
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCC-
Q ss_conf 7999974991999978996089995------0799893799992999999999599-3999988989986237983048-
Q 002471 777 RYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN- 848 (918)
Q Consensus 777 ~ll~~~~dg~I~i~D~~t~~~~~~l------~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~- 848 (918)
..++.+.|+...++..........+ ..+...+....+.+++..++.++.+ .+++|++..+.. ..+.....+
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~ 238 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALT 238 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSC
T ss_pred CEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCE-EEEECCCCCC
T ss_conf 369993899989998347873799962433300011061021538997388746998299996589907-9984457844
Q ss_pred ---------CCCEEEEEEECCCCEEEEEECC----------CEEEEEECCCCCEEEECCCCCCEEEEEEECCCC--EEEE
Q ss_conf ---------9953999992799989999849----------919999899991899816679768999947999--9999
Q 002471 849 ---------GNKFHSCVFHPTYPSLLVIGCY----------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG--YVAS 907 (918)
Q Consensus 849 ---------~~~i~~i~~sp~g~~l~s~s~d----------g~I~iwd~~~~~~~~~~~h~~~V~~la~spdg~--~Las 907 (918)
......+.+++++..+++...+ ..|.+||..+++.+....+...+.+++|+||++ ++++
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~ 318 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE
T ss_pred CCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 12685433035108999807997678874068712651799759998678884989966899877999928999699999
Q ss_pred EECCCCEEEEC
Q ss_conf 96698399939
Q 002471 908 ASHDKFVKLWK 918 (918)
Q Consensus 908 gs~Dg~I~iWd 918 (918)
++.|+.|++||
T Consensus 319 ~~~d~~i~v~D 329 (355)
T d2bbkh_ 319 STGDKTLYIHD 329 (355)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEE
T ss_conf 78999899999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=2.4e-18 Score=128.07 Aligned_cols=259 Identities=8% Similarity=-0.012 Sum_probs=161.4
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEEC
Q ss_conf 3035446306999858999916999999996----------899399998899823467413798-------76999998
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFS 689 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~i~fspdg~~Latgs----------~Dg~I~iwd~~~~~~~~~l~~h~~-------~V~~i~fs 689 (918)
+.+.+..+..+... .++|+|||+.|++.+ .|+.|.+||..+++.+..+..+.. ....++|+
T Consensus 55 ~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S 132 (368)
T d1mdah_ 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred CCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEEC
T ss_conf 98377888578777--5139899988999755676401035678699998999938306437854210246886405887
Q ss_pred CCCCEEEEEE-CCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----
Q ss_conf 9999899984-8980999957999954588515788736999738999099998179929999757990457852-----
Q 002471 690 PSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 763 (918)
Q Consensus 690 pdg~~Lasgs-~Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----- 763 (918)
||+++|+++. .++.|.+||+.+ .+....+..+.... +.+.+...++..+.||.+.+|++..........
T Consensus 133 pDGk~l~va~~~~~~v~~~d~~~-~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~ 207 (368)
T d1mdah_ 133 ASSACLLFFLFGSSAAAGLSVPG-ASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT 207 (368)
T ss_dssp TTSSCEEEEECSSSCEEEEEETT-TEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred CCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCE----ECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCC
T ss_conf 89989999968998599998998-93867860467523----74699823999948998899982689626665303111
Q ss_pred ----CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEC--CC----------CCCEEEEEECCCCCEEEEEEC--
Q ss_conf ----681189991299979999749919999789960899950--79----------989379999299999999959--
Q 002471 764 ----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GH----------TKPIDSVCWDPSGELLASVSE-- 825 (918)
Q Consensus 764 ----~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h----------~~~I~si~~spdg~~Las~s~-- 825 (918)
.......+.+++ .+.....+.+++++........... .. ......+++++++..++....
T Consensus 208 ~~~~~~~~~~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~ 285 (368)
T d1mdah_ 208 GAQNCSSQAAQANYPG--MLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp TTSCBCSCCEEETTTT--EEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred CCCCCCEEECCCCCCC--EEEEECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCC
T ss_conf 3566646601015586--89993489779996069936997602465430455401278835688717998799983589
Q ss_pred -------C-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCE-EE-EEECCCEEEEEECCCCCEEEECCCCCCEEE
Q ss_conf -------9-3999988989986237983048995399999279998-99-998499199998999918998166797689
Q 002471 826 -------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LL-VIGCYQSLELWNMSENKTMTLTAHEGLIAA 895 (918)
Q Consensus 826 -------d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~-l~-s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~ 895 (918)
. .|.+||..++ +.+..+.. ...+..++|+||++. ++ +...++.|++||..+++.+....-......
T Consensus 286 ~~~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~ 361 (368)
T d1mdah_ 286 SRSCLAAAENTSSVTASVG---QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPES 361 (368)
T ss_dssp SSCTTSCEEEEEEEESSSC---CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCE
T ss_pred CCEEECCCCEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCE
T ss_conf 7334058864999989999---48689558-9965179999899989999948999699998999979999879999878
Q ss_pred EEE
Q ss_conf 999
Q 002471 896 LAV 898 (918)
Q Consensus 896 la~ 898 (918)
|++
T Consensus 362 l~~ 364 (368)
T d1mdah_ 362 LSV 364 (368)
T ss_dssp EEC
T ss_pred EEE
T ss_conf 997
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.81 E-value=2.5e-16 Score=115.29 Aligned_cols=311 Identities=12% Similarity=0.026 Sum_probs=174.9
Q ss_pred CEEEECCCCEEEC-CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 1899738980211-699726738882054300001126887675455101589998788885432456853035446306
Q 002471 558 LMMFGTDGAGTLT-SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRA 636 (918)
Q Consensus 558 ~~~fs~dg~~~~~-~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l~~ 636 (918)
.+.|.+|+.+.+. ++.+.+||+.+++....++ ...+..
T Consensus 21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~-----------------------------------------~~~~~~ 59 (470)
T d2bgra1 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLE-----------------------------------------NSTFDE 59 (470)
T ss_dssp CCEECSSSEEEEESSSCEEEEETTTCCEEEEEC-----------------------------------------TTTTTT
T ss_pred CCEECCCCEEEEECCCCEEEEECCCCCEEEEEC-----------------------------------------HHHHHH
T ss_conf 789689997999759949999889997899970-----------------------------------------156443
Q ss_pred CCCCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 9998589999169999999968---------9939999889982346741379876999998999989998489809999
Q 002471 637 STSKVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 637 H~~~V~~i~fspdg~~Latgs~---------Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iw 707 (918)
|...|.++.|||||++|+.++. ++.+.|||+.+++ ...+..+...+..+.|+|||+.||... ++.+++|
T Consensus 60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~ 137 (470)
T d2bgra1 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVK 137 (470)
T ss_dssp SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEE
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEE
T ss_conf 16765405998988979999777100010467349999898885-131246874231010146764135751-4641379
Q ss_pred ECCCCCCEEEEECC------------------CCCCEEEEEECCCCCEEEEEEECCCCEEEEECC---------------
Q ss_conf 57999954588515------------------788736999738999099998179929999757---------------
Q 002471 708 DADNPGYSLRTFMG------------------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--------------- 754 (918)
Q Consensus 708 dl~~~~~~~~~~~~------------------h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~--------------- 754 (918)
+..++ ...+.... ..+....+.|+|+++.+++....+..|..|.+.
T Consensus 138 ~~~~g-~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (470)
T d2bgra1 138 IEPNL-PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (470)
T ss_dssp SSTTS-CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred ECCCC-CEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 88999-46532101477740535432011210047765307999987220268637767069987660477788713540
Q ss_pred --------------------CCEEEEEEE--------------CCCEEEEEECCCCEEEEEEC-C-C----EEEEEECCC
Q ss_conf --------------------990457852--------------68118999129997999974-9-9----199997899
Q 002471 755 --------------------NGSCTRVFK--------------GGTAQMRFQPHLGRYLAAAA-E-N----VVSILDAET 794 (918)
Q Consensus 755 --------------------~~~~~~~~~--------------~~~~~i~~sp~~~~ll~~~~-d-g----~I~i~D~~t 794 (918)
.+....... ..+..+.|.+++..++.... . + .+..+|..+
T Consensus 217 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~t 296 (470)
T d2bgra1 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (470)
T ss_dssp ECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 36654546886257999988861455203322478633478986677888768783347873046881599999961888
Q ss_pred CEEEEEEC------CCCCC-----EEEEEECCCCC--EEEEEECC---EEEEEECCCCCCCCEEEEECCCCCCEEEEEEE
Q ss_conf 60899950------79989-----37999929999--99999599---39999889899862379830489953999992
Q 002471 795 QACRLSLQ------GHTKP-----IDSVCWDPSGE--LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 795 ~~~~~~l~------~h~~~-----I~si~~spdg~--~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
+....... ..... .....|.+++. +++....+ .|++|+...+ ....+......+..+ ++
T Consensus 297 g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~----~~~~lt~g~~~v~~~-~~ 371 (470)
T d2bgra1 297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK----DCTFITKGTWEVIGI-EA 371 (470)
T ss_dssp TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS----CCEESCCSSSCEEEE-EE
T ss_pred CCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCC----CEEEECCCCEEEEEE-EE
T ss_conf 9478999875146621433531357772454237884798743675764599952687----304511698048787-89
Q ss_pred CCCCEEEEEE-CCC------EEEEEECCCCCEE-E----ECCCCCCEEEEEEECCCCEEEEEE---CCCCEEEE
Q ss_conf 7999899998-499------1999989999189-9----816679768999947999999996---69839993
Q 002471 859 PTYPSLLVIG-CYQ------SLELWNMSENKTM-T----LTAHEGLIAALAVSTETGYVASAS---HDKFVKLW 917 (918)
Q Consensus 859 p~g~~l~s~s-~dg------~I~iwd~~~~~~~-~----~~~h~~~V~~la~spdg~~Lasgs---~Dg~I~iW 917 (918)
.++..++..+ .++ .|+-.++..+... . +..|...+..++|+|||++++..+ ..-.+.+|
T Consensus 372 ~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~ 445 (470)
T d2bgra1 372 LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (470)
T ss_dssp ECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred ECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEE
T ss_conf 77999999995689983517999998889986057035435888987999999899999998328999819999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.75 E-value=3.7e-16 Score=114.17 Aligned_cols=324 Identities=9% Similarity=0.002 Sum_probs=199.9
Q ss_pred CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 69972673888205430000112688767545510158999878888543245685303544630699985899991699
Q 002471 571 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG 650 (918)
Q Consensus 571 ~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~i~fspdg 650 (918)
++.+.+|++.+++....+.-+..++... | ...+...+.+.. .........|.-.+.+..+++||
T Consensus 20 sG~V~V~dlpS~r~l~~IpVfspd~~~g-----~------g~~~es~~vl~~-----~~~~~~gd~hhP~~s~t~gtpDG 83 (441)
T d1qnia2 20 QGEVRVLGVPSMRELMRIPVFNVDSATG-----W------GITNESKEILGG-----DQQYLNGDCHHPHISMTDGRYDG 83 (441)
T ss_dssp TCCEEEEEETTTEEEEEECSSSBCTTTC-----T------TTSHHHHHHHCS-----SSCCSCCCBCCCEEEEETTEEEE
T ss_pred CCCEEEEECCCCCEEEEEEEECCCCCEE-----E------EECCCCCEEEEC-----CCCCCCCCCCCCCCCEECCCCCC
T ss_conf 7748999678980799997675789879-----9------988865047831-----33225675567772210326888
Q ss_pred CEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCCE--EEEEECCC-----------------EEEEEEC
Q ss_conf 9999996-899399998899823467413-7987699999899998--99984898-----------------0999957
Q 002471 651 KLLATGG-HDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPR--LATSSFDK-----------------TVRVWDA 709 (918)
Q Consensus 651 ~~Latgs-~Dg~I~iwd~~~~~~~~~l~~-h~~~V~~i~fspdg~~--Lasgs~Dg-----------------~I~Iwdl 709 (918)
++|++.. .+..|.++|++++++...+.. +...+..++|+++++. ++..+.+. .+..+|.
T Consensus 84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~ 163 (441)
T d1qnia2 84 KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA 163 (441)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 88999738999799998877847557956788786434870569989999566775443676630014555323886637
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEECCCEE
Q ss_conf 999954588515788736999738999099998179929999757990457852--681189991299979999749919
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~dg~I 787 (918)
.+ ......+.. ......+.|+|+++.+++++.....+..++..+......+. .....+.+.++++.+ ..+.++.+
T Consensus 164 ~t-~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~-~v~~~~v~ 240 (441)
T d1qnia2 164 ET-MDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK-TIGDSKVP 240 (441)
T ss_dssp TT-CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB-CCTTCCCC
T ss_pred CC-CEEEEEEEC-CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEE-EECCCCCE
T ss_conf 55-606478736-9986546987999989998517873189851571217899968851107996699999-96999828
Q ss_pred EEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE-CC-EEEEEECCCCC--------CCCEEEEECCCCCCEEEEEE
Q ss_conf 9997899608999507998937999929999999995-99-39999889899--------86237983048995399999
Q 002471 788 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGS--------EGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s-~d-~I~iwdl~s~~--------~~~~i~~~~~~~~~i~~i~~ 857 (918)
.+++......+..+..... ...+.++|||+++++++ .+ +|.+||+.+.. ...++.......-......|
T Consensus 241 vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f 319 (441)
T d1qnia2 241 VVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF 319 (441)
T ss_dssp EEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred EEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEE
T ss_conf 9980368706899717988-667268999878999077599389998322445752568842479960145547665226
Q ss_pred ECCCCEEEEEECCCEEEEEECCC----------CCEE-EE-----CCCCCCEEEEEEECCCCEEEEEE---CCCCE
Q ss_conf 27999899998499199998999----------9189-98-----16679768999947999999996---69839
Q 002471 858 HPTYPSLLVIGCYQSLELWNMSE----------NKTM-TL-----TAHEGLIAALAVSTETGYVASAS---HDKFV 914 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~iwd~~~----------~~~~-~~-----~~h~~~V~~la~spdg~~Lasgs---~Dg~I 914 (918)
.+++..+.+...|..|..|++.. ...+ .+ .+|...+.+.+++|+|+||++++ .|..+
T Consensus 320 d~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~ 395 (441)
T d1qnia2 320 DGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFL 395 (441)
T ss_dssp CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSC
T ss_pred CCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 5785599852443168972354221332267776568645326689877524542238988489965744425576
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=1.4e-15 Score=110.59 Aligned_cols=277 Identities=9% Similarity=-0.027 Sum_probs=166.0
Q ss_pred CCCCEEEEEECCCCCEEEE---EECCC--CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CC
Q ss_conf 9998589999169999999---96899--399998899823467413798769999989999899984----------89
Q 002471 637 STSKVICCHFSSDGKLLAT---GGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FD 701 (918)
Q Consensus 637 H~~~V~~i~fspdg~~Lat---gs~Dg--~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~D 701 (918)
+.+....++..++++.... ...++ .|.+||..+++.+.++..+... .+.|+||++.|++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 679866645589876126972045788621799708998377888578777--513989998899975567640103567
Q ss_pred CEEEEEECCCCCCEEEEECCCC-------CCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECC
Q ss_conf 8099995799995458851578-------873699973899909999817992999975799045785268118999129
Q 002471 702 KTVRVWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 774 (918)
Q Consensus 702 g~I~Iwdl~~~~~~~~~~~~h~-------~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~ 774 (918)
+.|++||..+ .+++..+..+. .....+.|+|+++.++++...++.|.+||+.+.+....+..+.....+...
T Consensus 96 ~~v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T d1mdah_ 96 DYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA 174 (368)
T ss_dssp EEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEE
T ss_pred CEEEEEECCC-CCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCCC
T ss_conf 8699998999-938306437854210246886405887899899999689985999989989386786046752374699
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEECCC
Q ss_conf 997999974991999978996089995------07998937999929999999995993999988989986237983048
Q 002471 775 LGRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~~~~l------~~h~~~I~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
...+++.+.|+.+.+++.......... ..+...+..+.+.+++..+.+... .++++++..... ..+......
T Consensus 175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~v~~~~~~~~~~-~~~~~~~~~ 252 (368)
T d1mdah_ 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS-SILQGDIPAAGA-TMKAAIDGN 252 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS-CCEEEECCSSCC-EEECCCCSS
T ss_pred CCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEECCC-CEEEEEECCCCE-EEEEECCCC
T ss_conf 823999948998899982689626665303111356664660101558689993489-779996069936-997602465
Q ss_pred ----------CCCEEEEEEECCCCEEEEEECCC---------EEEEEECCCCCEEEECCCCCCEEEEEEECCCC-E-EEE
Q ss_conf ----------99539999927999899998499---------19999899991899816679768999947999-9-999
Q 002471 849 ----------GNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETG-Y-VAS 907 (918)
Q Consensus 849 ----------~~~i~~i~~sp~g~~l~s~s~dg---------~I~iwd~~~~~~~~~~~h~~~V~~la~spdg~-~-Las 907 (918)
......+++++++..+++...++ .|.+||..+++.+....+...+.+++|+||++ + +++
T Consensus 253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 43045540127883568871799879998358973340588649999899994868955899651799998999899999
Q ss_pred EECCCCEEEEC
Q ss_conf 96698399939
Q 002471 908 ASHDKFVKLWK 918 (918)
Q Consensus 908 gs~Dg~I~iWd 918 (918)
+..|+.|++||
T Consensus 333 ~~~~~~v~v~D 343 (368)
T d1mdah_ 333 SAGTEVLDIYD 343 (368)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEE
T ss_conf 48999699998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.65 E-value=1.3e-13 Score=97.97 Aligned_cols=252 Identities=12% Similarity=0.079 Sum_probs=141.0
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC------------------CCCCEEEEEECCCC
Q ss_conf 446306999858999916999999996899399998899823467413------------------79876999998999
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------HSSLITDVRFSPSM 692 (918)
Q Consensus 631 ~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~------------------h~~~V~~i~fspdg 692 (918)
...+..+.+.+..+.|||||++||... ++.+++|+..++........ ..+....+.|+|||
T Consensus 104 ~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG 182 (470)
T d2bgra1 104 LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182 (470)
T ss_dssp ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCC
T ss_conf 131246874231010146764135751-4641379889994653210147774053543201121004776530799998
Q ss_pred CEEEEEECCCE-EEEEECC---CCC---C-----------------EEEEE----------------------CCCCCCE
Q ss_conf 98999848980-9999579---999---5-----------------45885----------------------1578873
Q 002471 693 PRLATSSFDKT-VRVWDAD---NPG---Y-----------------SLRTF----------------------MGHSASV 726 (918)
Q Consensus 693 ~~Lasgs~Dg~-I~Iwdl~---~~~---~-----------------~~~~~----------------------~~h~~~V 726 (918)
++|++...|.+ |..|.+. ... . .+..+ ......+
T Consensus 183 k~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (470)
T d2bgra1 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYL 262 (470)
T ss_dssp SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEE
T ss_pred CCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEE
T ss_conf 72202686377670699876604777887135403665454688625799998886145520332247863347898667
Q ss_pred EEEEECCCCCEEEEEEECCC-----CEEEEECCCCEEEEEEEC--------------CCEEEEEECCCCEE--EEEECCC
Q ss_conf 69997389990999981799-----299997579904578526--------------81189991299979--9997499
Q 002471 727 MSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRY--LAAAAEN 785 (918)
Q Consensus 727 ~si~fsp~~~~ll~sgs~Dg-----~I~iwdi~~~~~~~~~~~--------------~~~~i~~sp~~~~l--l~~~~dg 785 (918)
..+.|.+++..++......+ .++.+|..++........ ......+.++++.+ +....++
T Consensus 263 ~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg 342 (470)
T d2bgra1 263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG 342 (470)
T ss_dssp EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCCC
T ss_conf 78887687833478730468815999999618889478999875146621433531357772454237884798743675
Q ss_pred E--EEEEECCCCEEEEEECCCCCCEEEEEECCCCC-EEEEEECC--E-----EEEEECCCCCCCCEE-EEECCCCCCEEE
Q ss_conf 1--99997899608999507998937999929999-99999599--3-----999988989986237-983048995399
Q 002471 786 V--VSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED--S-----VRVWTVGSGSEGECV-HELSCNGNKFHS 854 (918)
Q Consensus 786 ~--I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~-~Las~s~d--~-----I~iwdl~s~~~~~~i-~~~~~~~~~i~~ 854 (918)
. |++|+........ +..+...|..+ +..+++ +++++..+ . |+..++..+....++ ..+..+...+..
T Consensus 343 ~~~ly~~~~~g~~~~~-lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s 420 (470)
T d2bgra1 343 YRHICYFQIDKKDCTF-ITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYS 420 (470)
T ss_dssp CEEEEEEETTCSCCEE-SCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEE
T ss_pred CCEEEEEECCCCCEEE-ECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEE
T ss_conf 7645999526873045-11698048787-897799999999568998351799999888998605703543588898799
Q ss_pred EEEECCCCEEEEEECC---CEEEEEECCCCCEEE
Q ss_conf 9992799989999849---919999899991899
Q 002471 855 CVFHPTYPSLLVIGCY---QSLELWNMSENKTMT 885 (918)
Q Consensus 855 i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~ 885 (918)
++|+|++++++..... -.+.+|+..+++.+.
T Consensus 421 ~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~ 454 (470)
T d2bgra1 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (470)
T ss_dssp EEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEECCCCCCEEEEEECCCCCEEE
T ss_conf 9999899999998328999819999989998999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.62 E-value=2.2e-13 Score=96.52 Aligned_cols=252 Identities=8% Similarity=-0.007 Sum_probs=153.4
Q ss_pred CCEEEEEEE-CCCCCEEEEEECCCCC--EEEEEECCC-----------------CEEEEECCCCCEEEEECCCCCCEEEE
Q ss_conf 303544630-6999858999916999--999996899-----------------39999889982346741379876999
Q 002471 627 SFKEANSVR-ASTSKVICCHFSSDGK--LLATGGHDK-----------------KAVLWHTDTLKSKTNLEEHSSLITDV 686 (918)
Q Consensus 627 s~~~~~~l~-~H~~~V~~i~fspdg~--~Latgs~Dg-----------------~I~iwd~~~~~~~~~l~~h~~~V~~i 686 (918)
++++...++ .+...+..++|+++|+ |++..+.+. .+..+|..+.+....+... .....+
T Consensus 103 t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v 181 (441)
T d1qnia2 103 IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNT 181 (441)
T ss_dssp TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCE
T ss_pred CCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC-CCCCCE
T ss_conf 7847557956788786434870569989999566775443676630014555323886637556064787369-986546
Q ss_pred EECCCCCEEEEEECCC-EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC-
Q ss_conf 9989999899984898-09999579999545885157887369997389990999981799299997579904578526-
Q 002471 687 RFSPSMPRLATSSFDK-TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG- 764 (918)
Q Consensus 687 ~fspdg~~Lasgs~Dg-~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~- 764 (918)
.|+|+++++++++.+. .+..++..+ ......+... ..-..+.+.++++.+ ..+.++.+.+++....+.++.+..
T Consensus 182 ~~spdGk~a~vt~~nse~~~~id~~t-~~~~d~i~v~-n~p~~~~~~~dGk~~--~v~~~~v~vvd~~~~~~v~~~IPvg 257 (441)
T d1qnia2 182 DADYTGKYATSTCYNSERAVDLAGTM-RNDRDWVVVF-NVERIAAAVKAGNFK--TIGDSKVPVVDGRGESEFTRYIPVP 257 (441)
T ss_dssp EECSSSSEEEEEESCTTCCSSHHHHT-CSSBCEEEEE-EHHHHHHHHHTTCCB--CCTTCCCCEEECSSSCSSEEEECCB
T ss_pred EECCCCCEEEEEECCCCCEEEEECCC-CCEEEEEEEC-CCCCEEEEECCCCEE--EECCCCCEEEECCCCCCEEEEEECC
T ss_conf 98799998999851787318985157-1217899968-851107996699999--9699982899803687068997179
Q ss_pred -CCEEEEEECCCCEEEEEEC-CCEEEEEECCCCE-----------EEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEE
Q ss_conf -8118999129997999974-9919999789960-----------899950799893799992999999999599-3999
Q 002471 765 -GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQA-----------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 830 (918)
Q Consensus 765 -~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~-----------~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~i 830 (918)
....+.++|+++++++++. +++|.+||+++.. ++.-.....-......|+++|..+.+...| .|..
T Consensus 258 ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~k 337 (441)
T d1qnia2 258 KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK 337 (441)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEE
T ss_conf 88667268999878999077599389998322445752568842479960145547665226578559985244316897
Q ss_pred EECCC------CC-CCCEEEEEC-----CCCCCEEEEEEECCCCEEEEEEC---CC----------EEEEEECCCCCE
Q ss_conf 98898------99-862379830-----48995399999279998999984---99----------199998999918
Q 002471 831 WTVGS------GS-EGECVHELS-----CNGNKFHSCVFHPTYPSLLVIGC---YQ----------SLELWNMSENKT 883 (918)
Q Consensus 831 wdl~s------~~-~~~~i~~~~-----~~~~~i~~i~~sp~g~~l~s~s~---dg----------~I~iwd~~~~~~ 883 (918)
|++.. +. ....+..+. +|...+.+..++|+|++|++++. |+ .-.++|+...+.
T Consensus 338 w~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~ 415 (441)
T d1qnia2 338 WNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEM 415 (441)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSC
T ss_pred ECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEE
T ss_conf 235422133226777656864532668987752454223898848996574442557678889876442698159757
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=5.9e-11 Score=81.05 Aligned_cols=232 Identities=13% Similarity=0.150 Sum_probs=121.2
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 399998899823467413798769999989999899984898---09999579999545885157887369997389990
Q 002471 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 661 ~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg---~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ 737 (918)
.|+|.|.+ +.....+..+...+...+|+|||+.||....+. .+.+.+... .....+..+........|+|++..
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEECCC-CCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCC--CCEEEEEEEECCCCCCEECCCCCE
T ss_conf 99999289-997679865898426038878999899998152675134431136--750677642024543024488986
Q ss_pred EEEEEECCCCEEEEECC--CCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CC--EEEEEECCCCEEEEEECCCCCCEEE
Q ss_conf 99998179929999757--9904578526--8118999129997999974-99--1999978996089995079989379
Q 002471 738 LICSCDGDGEIRYWSIN--NGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPIDS 810 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdi~--~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~I~s 810 (918)
++.....++...++... .......... ......+......++.... ++ .|.+++........ +.........
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEE
T ss_pred EEEEEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEE-EECCCCCCCC
T ss_conf 467640278641000022212200001014421145434554433000012687438654213310001-0001222234
Q ss_pred EEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCC---EEEEEECCCCCE
Q ss_conf 9992999999999599----399998898998623798304899539999927999899998499---199998999918
Q 002471 811 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 883 (918)
Q Consensus 811 i~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~iwd~~~~~~ 883 (918)
..|+|++..++..+.+ .+.+++...+ . . .............|+|||++|+..+..+ .|+++++..+..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~-~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG---G-V-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTC---C-E-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCC---C-C-EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 322345430577860588012567603564---4-0-5850686544558989999999998179984799999999977
Q ss_pred EEECCCCCCEEEEEEECC
Q ss_conf 998166797689999479
Q 002471 884 MTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 884 ~~~~~h~~~V~~la~spd 901 (918)
..+....+.+...+|+|-
T Consensus 251 ~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EECCCSSSEEEEEEECCC
T ss_pred EEEECCCCCEEEEEECCC
T ss_conf 998579985883782898
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.57 E-value=2.3e-11 Score=83.65 Aligned_cols=246 Identities=8% Similarity=-0.013 Sum_probs=134.1
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEE--EEEEC-CCEEEEEECCC
Q ss_conf 9998589999169999999968993999988998234674--1379876999998999989--99848-98099995799
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRL--ATSSF-DKTVRVWDADN 711 (918)
Q Consensus 637 H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l--~~h~~~V~~i~fspdg~~L--asgs~-Dg~I~Iwdl~~ 711 (918)
....+..++|++++++|+++.. +.+..|.+.....+... .........+.++++++.+ +++.. .+.|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 8999777999489899999938-947899990899769876412899867899878998799999327997899867457
Q ss_pred CCCEEEE----------------ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEE---EE-----ECCCE
Q ss_conf 9954588----------------515788736999738999099998179929999757990457---85-----26811
Q 002471 712 PGYSLRT----------------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VF-----KGGTA 767 (918)
Q Consensus 712 ~~~~~~~----------------~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~---~~-----~~~~~ 767 (918)
.+..... .......+.++.|+|++++++++......|.+|++.....+. .. ..+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEE
T ss_conf 88742068664033004764675568898115978889999899820799879999706887166525111127887408
Q ss_pred EEEEECCCCEEEEEEC-CCEEEEEECCCCEE--EEEEC-----------------CCCCCEEEEEECCCCCEEEEEEC--
Q ss_conf 8999129997999974-99199997899608--99950-----------------79989379999299999999959--
Q 002471 768 QMRFQPHLGRYLAAAA-ENVVSILDAETQAC--RLSLQ-----------------GHTKPIDSVCWDPSGELLASVSE-- 825 (918)
Q Consensus 768 ~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~--~~~l~-----------------~h~~~I~si~~spdg~~Las~s~-- 825 (918)
.+.|+|++..+++... ++.|.+|+...... +.... ........+.++|+|++|++...
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCC
T ss_conf 99988998669995158998999995598753778731240245565566654444357763169989999789971357
Q ss_pred C-----EEEEEECCCCCCCC---EEEEECCCCCCEEEEEEEC-CCCEEEEEEC-CCEEEEEECCCCCE
Q ss_conf 9-----39999889899862---3798304899539999927-9998999984-99199998999918
Q 002471 826 D-----SVRVWTVGSGSEGE---CVHELSCNGNKFHSCVFHP-TYPSLLVIGC-YQSLELWNMSENKT 883 (918)
Q Consensus 826 d-----~I~iwdl~s~~~~~---~i~~~~~~~~~i~~i~~sp-~g~~l~s~s~-dg~I~iwd~~~~~~ 883 (918)
+ .|..|++....... .+......+.....++++| ++++|+++.. ++.|.+|++.....
T Consensus 277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf 87542279999856887144676766777679986478964899999999967999499999828867
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.55 E-value=5.6e-11 Score=81.21 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=30.7
Q ss_pred EEEEEECCCCCEEEEEEC-CCEEEEEECCCCCCEEE--E--ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 699999899998999848-98099995799995458--8--51578873699973899909999817992999975799
Q 002471 683 ITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLR--T--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 683 V~~i~fspdg~~Lasgs~-Dg~I~Iwdl~~~~~~~~--~--~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~ 756 (918)
+.++.|+|+++++++++. ...|.+|+....+.... . ..........+.|+|+++.++++...++.|.+|++...
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 1597888999989982079987999970688716652511112788740899988998669995158998999995598
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.50 E-value=1.3e-10 Score=78.87 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=131.1
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 35446306999858999916999999996899399998899823467413798769999989999899984898099995
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwd 708 (918)
+.+..+.... .+..+++++||+++++...+++|+.|+... + ...+......+.+++|.++++++++...++.+.+|+
T Consensus 19 ~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~ 95 (302)
T d2p4oa1 19 KIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS 95 (302)
T ss_dssp EEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CEEEECCCCC-CCCCEEECCCCCEEEEECCCCEEEEEECCC-C-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEE
T ss_conf 0788888998-847877999988999968899899990899-8-899971799853689867788699832895378887
Q ss_pred CCCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-----------CEEEEEECCC
Q ss_conf 79999545885--1578873699973899909999817992999975799045785268-----------1189991299
Q 002471 709 ADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----------TAQMRFQPHL 775 (918)
Q Consensus 709 l~~~~~~~~~~--~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~-----------~~~i~~sp~~ 775 (918)
..........+ .........+.+.+++. ++++.+.++.|..++...+......... .....+..++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~ 174 (302)
T d2p4oa1 96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG 174 (302)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred ECCCCCCEEECCCCCCCCCCCEEEECCCCC-EEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 101111012102357863221667715797-8750356554102421687303675188640143157632243201169
Q ss_pred CEEEEE-ECCCEEEEEECCCCEEEE--EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCC
Q ss_conf 979999-749919999789960899--950799893799992999999999599-3999988989986237983048995
Q 002471 776 GRYLAA-AAENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 776 ~~ll~~-~~dg~I~i~D~~t~~~~~--~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
+.++++ ...+.|+.++........ ...........++++++|.++++...+ .|..|+.... ...+.........
T Consensus 175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~--~~~~~~~~~~~~~ 252 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS--TTIIAQAEQGVIG 252 (302)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--EEEEECGGGTCTT
T ss_pred CCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCCCC--EEEEEECCCCCCC
T ss_conf 83044037887698634433332345310158998752378799999999748991899878997--8999963789888
Q ss_pred EEEEEE---ECCCCEEEEEECC
Q ss_conf 399999---2799989999849
Q 002471 852 FHSCVF---HPTYPSLLVIGCY 870 (918)
Q Consensus 852 i~~i~~---sp~g~~l~s~s~d 870 (918)
.++++| .+|++.|++++..
T Consensus 253 pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 253 STAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEEEECCSTTTTTEEEEEECT
T ss_pred CEEEEECCCCCCCCEEEEECCC
T ss_conf 2489970878878989999889
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=9.1e-10 Score=73.50 Aligned_cols=261 Identities=10% Similarity=0.081 Sum_probs=113.2
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCC-----------------EEEEEECCCCCEEEEEE
Q ss_conf 9985899991699999999689939999889982346741-37987-----------------69999989999899984
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSL-----------------ITDVRFSPSMPRLATSS 699 (918)
Q Consensus 638 ~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~-~h~~~-----------------V~~i~fspdg~~Lasgs 699 (918)
...+....|||||+.||... ++.|++.+...+..+.... +.... -..+.|+|||++||...
T Consensus 113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred CCCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEE
T ss_conf 64311002426785699996-13299995489965897112676604436643100123036643489779898689999
Q ss_pred C-CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---------CCEEE
Q ss_conf 8-9809999579999545885157887369997389990999981799299997579904578526---------81189
Q 002471 700 F-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------GTAQM 769 (918)
Q Consensus 700 ~-Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---------~~~~i 769 (918)
. +..|..+.+..... .....+..+.+-.-+... ....+.++|+..+........ -+..+
T Consensus 192 ~D~s~V~~~~~~~~~~------~~~p~~~~~~Yp~~G~~n-----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~ 260 (465)
T d1xfda1 192 INDSRVPIMELPTYTG------SIYPTVKPYHYPKAGSEN-----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV 260 (465)
T ss_dssp EECTTSCEEEECCCSS------SSSCCCEEEECCBTTSCC-----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred ECCCCCCEEECCCCCC------CCCCEEEEEECCCCCCCC-----CCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 5366661464123445------444313345302568889-----72137998368981789995257676666304566
Q ss_pred EEECCCCEEEEEEC-C---CEEEEEECCCCEEEEEECC-CCCCE----EEEEECCCCCEE--EEEE----CCEEEEEECC
Q ss_conf 99129997999974-9---9199997899608999507-99893----799992999999--9995----9939999889
Q 002471 770 RFQPHLGRYLAAAA-E---NVVSILDAETQACRLSLQG-HTKPI----DSVCWDPSGELL--ASVS----EDSVRVWTVG 834 (918)
Q Consensus 770 ~~sp~~~~ll~~~~-d---g~I~i~D~~t~~~~~~l~~-h~~~I----~si~~spdg~~L--as~s----~d~I~iwdl~ 834 (918)
.|.+++..++.... + ..|.++|..++++...+.. ....| ....|+++|+.+ +..+ .+.++.+++.
T Consensus 261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~ 340 (465)
T d1xfda1 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (465)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEEEC
T ss_conf 87579938999974100301379970799927877897278517356786057468980577776543166716899831
Q ss_pred CC---CCCCEEEEECCCCCCEEEE-EEECCCCEEEEEECCC-----EEEEEECCCCCEEE-E---CCCCCCEEEEEEECC
Q ss_conf 89---9862379830489953999-9927999899998499-----19999899991899-8---166797689999479
Q 002471 835 SG---SEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQ-----SLELWNMSENKTMT-L---TAHEGLIAALAVSTE 901 (918)
Q Consensus 835 s~---~~~~~i~~~~~~~~~i~~i-~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~~-~---~~h~~~V~~la~spd 901 (918)
.. .....+..+......|..+ .|+.++..|+..+... .|+-.++....... + .........+.|+|+
T Consensus 341 ~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~ 420 (465)
T d1xfda1 341 SSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS 420 (465)
T ss_dssp CSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred CCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEEECCC
T ss_conf 56666788626982269921997789838999999999689998268999977899860553144678898799999999
Q ss_pred CCEEEEEEC
Q ss_conf 999999966
Q 002471 902 TGYVASASH 910 (918)
Q Consensus 902 g~~Lasgs~ 910 (918)
+++++..+.
T Consensus 421 ~~y~v~~~s 429 (465)
T d1xfda1 421 MDFFLLKCE 429 (465)
T ss_dssp SSEEEEECC
T ss_pred CCEEEEEEE
T ss_conf 999999800
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=9.8e-10 Score=73.28 Aligned_cols=222 Identities=14% Similarity=0.147 Sum_probs=141.7
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEE
Q ss_conf 46306999858999916999999996899---3999988998234674137987699999899998999848-9809999
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW 707 (918)
Q Consensus 632 ~~l~~H~~~V~~i~fspdg~~Latgs~Dg---~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~I~Iw 707 (918)
..+..+...+...+|||||+.||....+. .+.+.+..... ...+..+...+.+..|+|+++.++.... ++...++
T Consensus 32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~ 110 (269)
T d2hqsa1 32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 110 (269)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCC-EEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCEE
T ss_conf 7986589842603887899989999815267513443113675-067764202454302448898646764027864100
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCC--EEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEEC
Q ss_conf 5799995458851578873699973899909999817992--9999757990457852--68118999129997999974
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~--I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~ 783 (918)
.......................+.+++..++++...++. |.+.++.......... .......|++++..++....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 190 (269)
T d2hqsa1 111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 190 (269)
T ss_dssp EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 00222122000010144211454345544330000126874386542133100010001222234322345430577860
Q ss_pred CC---EEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC---C-EEEEEECCCCCCCCEEEEECCCCCCEEEEE
Q ss_conf 99---1999978996089995079989379999299999999959---9-399998898998623798304899539999
Q 002471 784 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 784 dg---~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~---d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
++ .+.+++....... +...........|+|||+.|+..+. . .++++++..+ . ...+......+...+
T Consensus 191 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~---~-~~~lt~~~g~~~~p~ 264 (269)
T d2hqsa1 191 NGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR---F-KARLPATDGQVKFPA 264 (269)
T ss_dssp CSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC---C-EEECCCSSSEEEEEE
T ss_pred CCCCEEEEEEECCCCCCE--EEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCC---C-EEEEECCCCCEEEEE
T ss_conf 588012567603564405--8506865445589899999999981799847999999999---7-799857998588378
Q ss_pred EECC
Q ss_conf 9279
Q 002471 857 FHPT 860 (918)
Q Consensus 857 ~sp~ 860 (918)
|+|-
T Consensus 265 WSP~ 268 (269)
T d2hqsa1 265 WSPY 268 (269)
T ss_dssp ECCC
T ss_pred ECCC
T ss_conf 2898
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=9e-10 Score=73.51 Aligned_cols=235 Identities=10% Similarity=-0.006 Sum_probs=122.3
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEE
Q ss_conf 9858999916999999996-899399998899823467413798769999989999899984898099995799995458
Q 002471 639 SKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 639 ~~V~~i~fspdg~~Latgs-~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~ 717 (918)
..-.+++++++|+++++.. ..+.|..++...................+++.+++.++++....+.+++++..+ ...+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-~~~~~ 92 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-NQTVL 92 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS-CCEEC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECC-CEEEE
T ss_conf 98788999699999999718998899993899668974369866840899938998898631000035542112-00000
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE-E--CCCEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 851578873699973899909999817992999975799045785-2--6811899912999799997499199997899
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K--GGTAQMRFQPHLGRYLAAAAENVVSILDAET 794 (918)
Q Consensus 718 ~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~-~--~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t 794 (918)
... ......++++.+++. ++++-..+..+..++.......... . .....+.+.+++..+++...++.|..++...
T Consensus 93 ~~~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~ 170 (260)
T d1rwia_ 93 PFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 170 (260)
T ss_dssp CCC-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred EEE-EEEECCCCCCCCCCE-EEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCC
T ss_conf 010-000000002455320-575033555321123222201223203667752054548998864102564332223431
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEE
Q ss_conf 60899950799893799992999999999599-39999889899862379830489953999992799989999849919
Q 002471 795 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 873 (918)
Q Consensus 795 ~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I 873 (918)
................++++++++++++.... .|..++..... ..............+++++++..+++-..++.|
T Consensus 171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCE---EEEECCCCCCCEEEEEEECCCCEEEEECCCCEE
T ss_conf 00122210114787631231000134321489989999699976---999706998981799990899999997999989
Q ss_pred EEEECC
Q ss_conf 999899
Q 002471 874 ELWNMS 879 (918)
Q Consensus 874 ~iwd~~ 879 (918)
+.++..
T Consensus 248 ~~i~~~ 253 (260)
T d1rwia_ 248 VKLTSL 253 (260)
T ss_dssp EEECCC
T ss_pred EEEECC
T ss_conf 999599
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=1.9e-09 Score=71.47 Aligned_cols=189 Identities=8% Similarity=-0.018 Sum_probs=68.8
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEC
Q ss_conf 58999916999999996899399998899823467413798769999989999899984898099995799995458851
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 641 V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~ 720 (918)
...+++++++.++++....+.+++++..+...+.... ......++++.++++++++-..+..+.+++............
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 137 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT 137 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred CEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEEE-EEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 4089993899889863100003554211200000010-000000002455320575033555321123222201223203
Q ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf 5788736999738999099998179929999757990457852---6811899912999799997499199997899608
Q 002471 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 797 (918)
Q Consensus 721 ~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~---~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 797 (918)
......++++.+++. ++++...++.|..++........... .....+++.+++..+++....+.|..++......
T Consensus 138 -~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~ 215 (260)
T d1rwia_ 138 -GLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 215 (260)
T ss_dssp -SCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC
T ss_pred -CCCCCCEEEECCCCC-EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEE
T ss_conf -667752054548998-864102564332223431001222101147876312310001343214899899996999769
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEE
Q ss_conf 99950799893799992999999999599-399998
Q 002471 798 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 832 (918)
Q Consensus 798 ~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwd 832 (918)
.......-.....|++++++.++++-..+ +|+.++
T Consensus 216 ~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 216 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred EEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 997069989817999908999999979999899995
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.3e-09 Score=70.89 Aligned_cols=234 Identities=12% Similarity=0.149 Sum_probs=122.3
Q ss_pred EEEEECCCCCEEEEEECC-CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEE-
Q ss_conf 899991699999999689-939999889982346741379876999998999989998489809999579999545885-
Q 002471 642 ICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF- 719 (918)
Q Consensus 642 ~~i~fspdg~~Latgs~D-g~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~- 719 (918)
.++.|||||++||....| ..|..+.+.... ......+..+.+-.-|.... ...+.++|+..+.......
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~np----~~~l~v~d~~~~~~~~~~~~ 246 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSENP----SISLHVIGLNGPTHDLEMMP 246 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSCCC----EEEEEEEESSSSCCCEECCC
T ss_pred CEEEECCCCCEEEEEEECCCCCCEEECCCCC-----CCCCCEEEEEECCCCCCCCC----CEEEEEEECCCCCEEEEEEC
T ss_conf 3489779898689999536666146412344-----54443133453025688897----21379983689817899952
Q ss_pred ----CCCCCCEEEEEECCCCCEEEEEEECC---CCEEEEECCCCEEEEEEECC--------CEEEEEECCCCEEEE--EE
Q ss_conf ----15788736999738999099998179---92999975799045785268--------118999129997999--97
Q 002471 720 ----MGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRVFKGG--------TAQMRFQPHLGRYLA--AA 782 (918)
Q Consensus 720 ----~~h~~~V~si~fsp~~~~ll~sgs~D---g~I~iwdi~~~~~~~~~~~~--------~~~i~~sp~~~~ll~--~~ 782 (918)
......+..+.|.+++..++.....+ ..|.++|..++++...+... .....|.+++..++. ..
T Consensus 247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s 326 (465)
T d1xfda1 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (465)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEE
T ss_conf 57676666304566875799389999741003013799707999278778972785173567860574689805777765
Q ss_pred -CC--CEEEEEECC------CCEEEEEECCCCCCEEEE-EECCCCCEEE-EEECC---E--EEEEECCCCCCCCEEEEEC
Q ss_conf -49--919999789------960899950799893799-9929999999-99599---3--9999889899862379830
Q 002471 783 -AE--NVVSILDAE------TQACRLSLQGHTKPIDSV-CWDPSGELLA-SVSED---S--VRVWTVGSGSEGECVHELS 846 (918)
Q Consensus 783 -~d--g~I~i~D~~------t~~~~~~l~~h~~~I~si-~~spdg~~La-s~s~d---~--I~iwdl~s~~~~~~i~~~~ 846 (918)
.+ +.++.+++. .+..+..+....-.|..+ .|+.+++.|+ ++..+ . ++-.++.......|+....
T Consensus 327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~ 406 (465)
T d1xfda1 327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDL 406 (465)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTS
T ss_pred EECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCC
T ss_conf 43166716899831566667886269822699219977898389999999996899982689999778998605531446
Q ss_pred CCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCEE
Q ss_conf 489953999992799989999849---91999989999189
Q 002471 847 CNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTM 884 (918)
Q Consensus 847 ~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~ 884 (918)
........+.|+|++++++..+.. -.+.+++..+++.+
T Consensus 407 ~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~ 447 (465)
T d1xfda1 407 VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (465)
T ss_dssp SSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 78898799999999999999800699984999999999799
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.37 E-value=8.9e-09 Score=67.20 Aligned_cols=237 Identities=12% Similarity=0.102 Sum_probs=123.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEEC-------CCCEEEEECCCCCEEEEECC----CCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 69998589999169999999968-------99399998899823467413----79876999998999989998489809
Q 002471 636 ASTSKVICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEE----HSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 636 ~H~~~V~~i~fspdg~~Latgs~-------Dg~I~iwd~~~~~~~~~l~~----h~~~V~~i~fspdg~~Lasgs~Dg~I 704 (918)
..-.....++|.++|+++++... ++.|..||..++........ ....-..+.|.+++..|+++.....|
T Consensus 15 ~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i 94 (314)
T d1pjxa_ 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEE
T ss_conf 59989717399699999999875402345299999998999959999777655678853069990799989999779839
Q ss_pred EEEECCCCCCEEEEECC-CC----CCEEEEEECCCCCEEEEEEEC---------------CCCEEEEECCCCEEEEEEE-
Q ss_conf 99957999954588515-78----873699973899909999817---------------9929999757990457852-
Q 002471 705 RVWDADNPGYSLRTFMG-HS----ASVMSLDFHPNKDDLICSCDG---------------DGEIRYWSINNGSCTRVFK- 763 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~-h~----~~V~si~fsp~~~~ll~sgs~---------------Dg~I~iwdi~~~~~~~~~~- 763 (918)
..++.+. . ....+.. .. ...+.+.+.+++..++ +-.. +|.|+.++.. ++......
T Consensus 95 ~~~~~~g-~-~~~~~~~~~~g~~~~~pndl~~d~~G~lyv-td~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~ 170 (314)
T d1pjxa_ 95 LVVQTDG-T-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA 170 (314)
T ss_dssp EEEETTS-C-EEECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred EEEECCC-C-EEEEEECCCCCCCCCCCCEEEECCCCCEEE-ECCCCCCCCCCCCCEECCCCCEEEEEEEC-CCEEEEECC
T ss_conf 9994777-4-799973343245457872789888998999-14866754320110002688438999525-740375078
Q ss_pred -CCCEEEEEECCCC----EEEEE-ECCCEEEEEECCCCEEE------EEECC-CCCCEEEEEECCCCCEEEEEECC-EEE
Q ss_conf -6811899912999----79999-74991999978996089------99507-99893799992999999999599-399
Q 002471 764 -GGTAQMRFQPHLG----RYLAA-AAENVVSILDAETQACR------LSLQG-HTKPIDSVCWDPSGELLASVSED-SVR 829 (918)
Q Consensus 764 -~~~~~i~~sp~~~----~ll~~-~~dg~I~i~D~~t~~~~------~~l~~-h~~~I~si~~spdg~~Las~s~d-~I~ 829 (918)
.....+.|++++. .++++ ...+.|..||+.....+ ..+.+ .......++++.+|+++++.... .|.
T Consensus 171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~ 250 (314)
T d1pjxa_ 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEE
T ss_conf 53221369978877630379998602431177611676543015689971335666410257834785799982799999
Q ss_pred EEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECC
Q ss_conf 998898998623798304899539999927999899998-49919999899
Q 002471 830 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 879 (918)
Q Consensus 830 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~ 879 (918)
+||...+ ..+..+........+++|.++++.|++.. .++.|..+++.
T Consensus 251 ~~dp~~g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 251 VFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEECCCC---EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 9969999---79999979999878999928989999998789919999789
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.28 E-value=2.7e-08 Score=64.08 Aligned_cols=229 Identities=10% Similarity=0.133 Sum_probs=104.8
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC------CCCCEEEEEECCCCC-EEEEE-ECCCEEEEEECCC
Q ss_conf 858999916999999996899399998899823467413------798769999989999-89998-4898099995799
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------HSSLITDVRFSPSMP-RLATS-SFDKTVRVWDADN 711 (918)
Q Consensus 640 ~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~------h~~~V~~i~fspdg~-~Lasg-s~Dg~I~Iwdl~~ 711 (918)
....++++++++++++-...+.|++||.+ ++.+..+.. ....-..+.+..+.. .+++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-
T ss_conf 90079994999899997998989999699-9999981665788664226630001234455200004775310000025-
Q ss_pred CCCEEEEEC-CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC-----CCEEEEEECCCCEEEEEECCC
Q ss_conf 995458851-57887369997389990999981799299997579904578526-----811899912999799997499
Q 002471 712 PGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 712 ~~~~~~~~~-~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~-----~~~~i~~sp~~~~ll~~~~dg 785 (918)
+.....+. ........+++.+++. ++++....+.+.+++.. ++.+..+.. ....+.+.+++..+++....+
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~ 178 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 178 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred -CCCEEECCCCCCCCCCEECCCCCCC-EEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCC
T ss_conf -6302403888642542000014784-79996326325676268-75010022001025662432012001786201355
Q ss_pred EEEEEECCCCEEEEEEC--CCCCCEEEEEECCCCCEEEEEEC-C-EEEEEECCCCCCCCEEEEEC--CCCCCEEEEEEEC
Q ss_conf 19999789960899950--79989379999299999999959-9-39999889899862379830--4899539999927
Q 002471 786 VVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHP 859 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~--~h~~~I~si~~spdg~~Las~s~-d-~I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~sp 859 (918)
.|.+||.. ++.+..+. +.......|+++++|+++++-.. + .|.+|+.. + +.+..+. ........+++.+
T Consensus 179 ~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 179 CVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp EEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEET
T ss_pred CEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-C---CEEEEEECCCCCCCEEEEEEEC
T ss_conf 10023047-94445301132114876232314786999978998089999999-9---9999996888889883799908
Q ss_pred CCCEEEEEECCCEEEEEECC
Q ss_conf 99989999849919999899
Q 002471 860 TYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~iwd~~ 879 (918)
++. |++...++.|++|...
T Consensus 254 dG~-l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 254 DGS-VVLASKDYRLYIYRYV 272 (279)
T ss_dssp TTE-EEEEETTTEEEEEECS
T ss_pred CCC-EEEEECCCEEEEEEEE
T ss_conf 991-9999189969998722
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.28 E-value=2.8e-08 Score=64.03 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=111.3
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--CEEEEEECCCCCC
Q ss_conf 99985899991699999999689939999889982346741379876999998999989998489--8099995799995
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGY 714 (918)
Q Consensus 637 H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D--g~I~Iwdl~~~~~ 714 (918)
....+..++|.++|+++++-...+.|+.|+.+.......+.........++|.++++++++...+ ....++.+.....
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCC
T ss_conf 88674707899999999997799999999899995999994899870389999999999995689731104998738996
Q ss_pred EEEEECCC---CCCEEEEEECCCCCEEEEEEEC------CCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEEC
Q ss_conf 45885157---8873699973899909999817------9929999757990457852--68118999129997999974
Q 002471 715 SLRTFMGH---SASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 715 ~~~~~~~h---~~~V~si~fsp~~~~ll~sgs~------Dg~I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~ 783 (918)
.+..+..+ ......+.+.+++. ++++... .+.+..++........... .....+.|+++++.++++..
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred EEEEECCCCCCCCCCCCEEEEECCC-EEECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCEEEEECC
T ss_conf 3644426777555875226773065-320013540025742157884166335788612330100010122212787404
Q ss_pred -CCEEEEEECCCC-E---EE----EEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECC------
Q ss_conf -991999978996-0---89----9950799893799992999999999599-399998898998623798304------
Q 002471 784 -ENVVSILDAETQ-A---CR----LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC------ 847 (918)
Q Consensus 784 -dg~I~i~D~~t~-~---~~----~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~------ 847 (918)
.+.|+.|++... . .. ............++++.+|++.++...+ .|.+|+. .+ +.+..+..
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~~~~ 272 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGRDEG 272 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTGGGT
T ss_pred CCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CC---CEEEEEECCCCCCC
T ss_conf 689147999769983620246333312577641036417389999999848998999979-99---59889968875778
Q ss_pred CCCCEEEEEEECCCCEEEEEEC
Q ss_conf 8995399999279998999984
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGC 869 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~ 869 (918)
+...+.+++|.++...+++...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 273 HMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CSCBCCEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEECC
T ss_conf 6750466778079988999857
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.27 E-value=3.4e-08 Score=63.50 Aligned_cols=195 Identities=11% Similarity=0.114 Sum_probs=119.5
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC----CCEEEEEECCCCCEEEEEECC-------------C
Q ss_conf 85899991699999999689939999889982346741379----876999998999989998489-------------8
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITDVRFSPSMPRLATSSFD-------------K 702 (918)
Q Consensus 640 ~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~----~~V~~i~fspdg~~Lasgs~D-------------g 702 (918)
.-..++|.+++..|+++.....|..++.+............ ...+++++.++|.+.++-... .
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCC
T ss_conf 53069990799989999779839999477747999733432454578727898889989991486675432011000268
Q ss_pred EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCC----EEEEEEECCCCEEEEECCCCEEEE------EEEC----CCEE
Q ss_conf 0999957999954588515788736999738999----099998179929999757990457------8526----8118
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD----DLICSCDGDGEIRYWSINNGSCTR------VFKG----GTAQ 768 (918)
Q Consensus 703 ~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~----~ll~sgs~Dg~I~iwdi~~~~~~~------~~~~----~~~~ 768 (918)
.-+||.+...+....... .-..-+.++|+++++ .++++-...+.|..|++.....+. .+.. ....
T Consensus 152 ~G~v~~~~~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG 230 (314)
T d1pjxa_ 152 FGSIYCFTTDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp CEEEEEECTTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CCEEEEEEECCCEEEEEC-CCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEE
T ss_conf 843899952574037507-8532213699788776303799986024311776116765430156899713356664102
Q ss_pred EEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECC-EEEEEECCC
Q ss_conf 9991299979999749919999789960899950799893799992999999-999599-399998898
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSED-SVRVWTVGS 835 (918)
Q Consensus 769 i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~L-as~s~d-~I~iwdl~s 835 (918)
+++..+++.+++....+.|.+||.+.+..+..+.......++++|.++++.| ++.+.+ .|..+++..
T Consensus 231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf 578347857999827999999969999799999799998789999289899999987899199997899
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.24 E-value=2.5e-08 Score=64.37 Aligned_cols=187 Identities=14% Similarity=0.096 Sum_probs=98.2
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-EEEEE--CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 99985899991699999999689939999889982-34674--1379876999998999989998489809999579999
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 637 H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~-~~~~l--~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~ 713 (918)
....+.+++|+++|+++++...++.+.+|+..... ....+ .........+.+.+++.++++.+.++.+..++.....
T Consensus 66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 145 (302)
T ss_dssp CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCC
T ss_conf 79985368986778869983289537888710111101210235786322166771579787503565541024216873
Q ss_pred CEEEEEC---------CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE---E--ECCCEEEEEECCCCEEE
Q ss_conf 5458851---------57887369997389990999981799299997579904578---5--26811899912999799
Q 002471 714 YSLRTFM---------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---F--KGGTAQMRFQPHLGRYL 779 (918)
Q Consensus 714 ~~~~~~~---------~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~---~--~~~~~~i~~sp~~~~ll 779 (918)
..+.... ........+.+. +..++++....+.|+.+++........ + ......+++.+++..++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v 223 (302)
T d2p4oa1 146 GSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG 223 (302)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred CEEEECCCCCCEEECCCCCCCCCCCCCC--CCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEE
T ss_conf 0367518864014315763224320116--98304403788769863443333234531015899875237879999999
Q ss_pred EEECCCEEEEEECCCCEE-EEEECCCCCCEEEEEE---CCCCCEEEEEEC
Q ss_conf 997499199997899608-9995079989379999---299999999959
Q 002471 780 AAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW---DPSGELLASVSE 825 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~-~~~l~~h~~~I~si~~---spdg~~Las~s~ 825 (918)
+...++.|..++...... +......-...++++| .+|++.|++++.
T Consensus 224 a~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 224 ATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp ECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EECCCCCEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEECC
T ss_conf 97489918998789978999963789888248997087887898999988
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.17 E-value=1e-07 Score=60.51 Aligned_cols=230 Identities=9% Similarity=0.049 Sum_probs=112.5
Q ss_pred ECCC--CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCCCEEE
Q ss_conf 9169--999999968993999988998234674137987699999899998999848-9-----8099995799995458
Q 002471 646 FSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-D-----KTVRVWDADNPGYSLR 717 (918)
Q Consensus 646 fspd--g~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-D-----g~I~Iwdl~~~~~~~~ 717 (918)
.+|| |+.+|..+ ++.|++.|+..++. ..+..+...+...+|+|||+.||.... + ..|.+++... +. ..
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~-g~-~~ 81 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-GE-IK 81 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-TE-EE
T ss_pred CCCCCCCCEEEEEE-CCCEEEEECCCCCE-EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECC-CC-EE
T ss_conf 58887999999990-99689998999987-99766998526779878999899998628987722899998259-95-28
Q ss_pred EECC-------CCCCEEEEEECCCCCEEEEEEECC-----CCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECC-
Q ss_conf 8515-------788736999738999099998179-----929999757990457852681189991299979999749-
Q 002471 718 TFMG-------HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE- 784 (918)
Q Consensus 718 ~~~~-------h~~~V~si~fsp~~~~ll~sgs~D-----g~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~d- 784 (918)
.+.. .........|+|++..++++...+ ..+..++.............. ...+.+++..++.....
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 160 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA-THILFADGRRVIGRNTFE 160 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC-SEEEEETTEEEEEESCSC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCC-CEEEECCCCEEEEEECCC
T ss_conf 8641688754764443431027988779999713787652024651587760688017865-234646998498862046
Q ss_pred -----------CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEECCCCCC
Q ss_conf -----------919999789960899950799893799992999999999599--3999988989986237983048995
Q 002471 785 -----------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 785 -----------g~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
................ ...........+.++..++.....+ .|.++|+..... + .+... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~---~lt~~-~~ 234 (281)
T d1k32a2 161 LPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-R---KHTSF-TD 234 (281)
T ss_dssp CTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-E---ECCCC-CS
T ss_pred CCEEEEECCCCCCEEEEECCCCCEEEC-CCCCCCCCEEEEECCCCCEECCCCCCCCEEEEECCCCCE-E---EEECC-CC
T ss_conf 640444205886204441136612240-477666421331035320001134552128996899965-9---81058-98
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEC
Q ss_conf 399999279998999984991999989999189981
Q 002471 852 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 887 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 887 (918)
.....|+|+|+.|+.. .++.|+++|+.+++...+.
T Consensus 235 ~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 235 YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred CCCCCCCCCCCEEEEE-ECCEEEEEECCCCCEEEEC
T ss_conf 6443286798999998-5999999989999878842
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.15 E-value=1.2e-07 Score=59.95 Aligned_cols=186 Identities=11% Similarity=0.057 Sum_probs=106.9
Q ss_pred CCCCCEEEEEECCCCCEEEEEECC----CCEEEEECCCCCEEEEECC--CCCCEEEEEECCCCCEEEEEEC------CCE
Q ss_conf 699985899991699999999689----9399998899823467413--7987699999899998999848------980
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSF------DKT 703 (918)
Q Consensus 636 ~H~~~V~~i~fspdg~~Latgs~D----g~I~iwd~~~~~~~~~l~~--h~~~V~~i~fspdg~~Lasgs~------Dg~ 703 (918)
........++|++||+++++...+ +.|...+............ .......+.+.++|++.++... .+.
T Consensus 79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~ 158 (319)
T d2dg1a1 79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 158 (319)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCE
T ss_conf 89987038999999999999568973110499873899636444267775558752267730653200135400257421
Q ss_pred EEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCE-EEEEE--------E--CCCEEEEEE
Q ss_conf 999957999954588515788736999738999099998179929999757990-45785--------2--681189991
Q 002471 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF--------K--GGTAQMRFQ 772 (918)
Q Consensus 704 I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~-~~~~~--------~--~~~~~i~~s 772 (918)
+..++.+ +..+..+...-...+.|+|+++++.++++-...+.|+.|++.... ..... . .....+++.
T Consensus 159 v~~~~~d--g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD 236 (319)
T d2dg1a1 159 VYYVSPD--FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 236 (319)
T ss_dssp EEEECTT--SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred EEEEECC--CCEEEEEEECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEEC
T ss_conf 5788416--63357886123301000101222127874046891479997699836202463333125776410364173
Q ss_pred CCCCEEEEEECCCEEEEEECCCCEEEEEECC------CCCCEEEEEECCCCCEEEEEE
Q ss_conf 2999799997499199997899608999507------998937999929999999995
Q 002471 773 PHLGRYLAAAAENVVSILDAETQACRLSLQG------HTKPIDSVCWDPSGELLASVS 824 (918)
Q Consensus 773 p~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~------h~~~I~si~~spdg~~Las~s 824 (918)
.+++.+++....+.|.+||. .++.+..+.. +...+++++|.++...+++..
T Consensus 237 ~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 237 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEC
T ss_conf 89999999848998999979-9959889968875778675046677807998899985
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.14 E-value=1.4e-07 Score=59.56 Aligned_cols=227 Identities=13% Similarity=0.134 Sum_probs=135.9
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECC------CCCCEEEEEECCCCCEEEEE-EECCCCEEEEECC
Q ss_conf 7699999899998999848980999957999954588515------78873699973899909999-8179929999757
Q 002471 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICS-CDGDGEIRYWSIN 754 (918)
Q Consensus 682 ~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~------h~~~V~si~fsp~~~~ll~s-gs~Dg~I~iwdi~ 754 (918)
....|++.++++++++-..+..|++||.+ +..+..+.. .......+.+..+...++++ .+.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 90079994999899997998989999699--9999981665788664226630001234455200004775310000025
Q ss_pred CCEEEEEEEC----CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE--CCCCCCEEEEEECCCCCEEEEEECC-E
Q ss_conf 9904578526----8118999129997999974991999978996089995--0799893799992999999999599-3
Q 002471 755 NGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPSGELLASVSED-S 827 (918)
Q Consensus 755 ~~~~~~~~~~----~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l--~~h~~~I~si~~spdg~~Las~s~d-~ 827 (918)
+.....+.. ....+.+.+++..+++....+.+.+++.. ++.+..+ ..+......+++.++++++++.... .
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred -CCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCC
T ss_conf -630240388864254200001478479996326325676268-750100220010256624320120017862013551
Q ss_pred EEEEECCCCCCCCEEEEEC--CCCCCEEEEEEECCCCEEEEEECC-CEEEEEECCCCCEE-EEC--CCCCCEEEEEEECC
Q ss_conf 9999889899862379830--489953999992799989999849-91999989999189-981--66797689999479
Q 002471 828 VRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLT--AHEGLIAALAVSTE 901 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~sp~g~~l~s~s~d-g~I~iwd~~~~~~~-~~~--~h~~~V~~la~spd 901 (918)
|++|+... ..+..+. ........+++.+++..+++-..+ +.|.+|+.. ++.+ .+. ......+.+++.++
T Consensus 180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred EEEEECCC----CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCCCEEEEEEECC
T ss_conf 00230479----4445301132114876232314786999978998089999999-999999968888898837999089
Q ss_pred CCEEEEEECCCCEEEEC
Q ss_conf 99999996698399939
Q 002471 902 TGYVASASHDKFVKLWK 918 (918)
Q Consensus 902 g~~Lasgs~Dg~I~iWd 918 (918)
+.++ .++.+.+|++|+
T Consensus 255 G~l~-V~~~n~~v~~fr 270 (279)
T d1q7fa_ 255 GSVV-LASKDYRLYIYR 270 (279)
T ss_dssp TEEE-EEETTTEEEEEE
T ss_pred CCEE-EEECCCEEEEEE
T ss_conf 9199-991899699987
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.77 E-value=3.4e-06 Score=50.74 Aligned_cols=197 Identities=8% Similarity=0.060 Sum_probs=103.9
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEEC-CC-----CEEEEECCCCCEEEEEC------CCCCCEEEEEECCCCCEEEEEE
Q ss_conf 463069998589999169999999968-99-----39999889982346741------3798769999989999899984
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGH-DK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSS 699 (918)
Q Consensus 632 ~~l~~H~~~V~~i~fspdg~~Latgs~-Dg-----~I~iwd~~~~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs 699 (918)
..|..+.+.+...+|||||+.||.... ++ .|.+++...++...... ..........|+|+++.|+...
T Consensus 34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99766998526779878999899998628987722899998259952886416887547644434310279887799997
Q ss_pred CC------CEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCC-----------CEEEEECCCCEEEEEE
Q ss_conf 89------809999579999545885157887369997389990999981799-----------2999975799045785
Q 002471 700 FD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----------EIRYWSINNGSCTRVF 762 (918)
Q Consensus 700 ~D------g~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg-----------~I~iwdi~~~~~~~~~ 762 (918)
.. ..+.+.+... ...... +......+ +.+++..+++....+. ...++...........
T Consensus 114 ~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (281)
T d1k32a2 114 AMQPFSSMTCLYRVENDG--INFVPL--NLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 188 (281)
T ss_dssp TTSSSTTCCEEEEEEGGG--TEEEEC--CSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred CCCCCCCCEEEEEECCCC--CEEEEE--CCCCCCEE-EECCCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCEEECC
T ss_conf 137876520246515877--606880--17865234-6469984988620466404442058862044411366122404
Q ss_pred EC--CCEEEEEECCCCEEEEEEC---CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCC
Q ss_conf 26--8118999129997999974---991999978996089995079989379999299999999959939999889899
Q 002471 763 KG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 837 (918)
Q Consensus 763 ~~--~~~~i~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d~I~iwdl~s~~ 837 (918)
.. ......+.. ..++.... ...|+++|+............. .....|+|||+.|+......|+++|+.+++
T Consensus 189 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~--~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 189 DMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILFSKGGSIYIFNPDTEK 264 (281)
T ss_dssp CCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCEEEEEC--CCCCEECCCCCCCCEEEEECCCCCEEEEECCCC--CCCCCCCCCCCEEEEEECCEEEEEECCCCC
T ss_conf 7766642133103--532000113455212899689996598105898--644328679899999859999999899998
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.61 E-value=1e-05 Score=47.76 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=64.8
Q ss_pred EEEECC---CCCEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCEEEEEECC--CCCEEEEEECCC-------------
Q ss_conf 999916---999999996-899399998899823467413-798769999989--999899984898-------------
Q 002471 643 CCHFSS---DGKLLATGG-HDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSP--SMPRLATSSFDK------------- 702 (918)
Q Consensus 643 ~i~fsp---dg~~Latgs-~Dg~I~iwd~~~~~~~~~l~~-h~~~V~~i~fsp--dg~~Lasgs~Dg------------- 702 (918)
.+.+.. ||++|++.. .+..|.+.|+++.++...+.. ....+..++..+ +..|++..+.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCH
T ss_conf 51444885551289997589863899988540566799667887775012025797479973676544459998513240
Q ss_pred -----EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf -----099995799995458851578873699973899909999817
Q 002471 703 -----TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG 744 (918)
Q Consensus 703 -----~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~ 744 (918)
.+.++|.++ ........ -......+.++++++.+++++..
T Consensus 169 ~~y~~~~t~ID~~t-m~V~~QV~-V~g~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 169 ANYVNVFTAVDADK-WEVAWQVL-VSGNLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp G-EEEEEEEEETTT-TEEEEEEE-ESSCCCCEEECSSSSEEEEEESC
T ss_pred HHCCEEEEEEECCC-CEEEEEEE-ECCCHHCCCCCCCCCEEEEEECC
T ss_conf 11226899996677-66989964-08972015318999989997135
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.54 E-value=1.5e-05 Score=46.59 Aligned_cols=217 Identities=13% Similarity=0.097 Sum_probs=89.8
Q ss_pred EEEECCCC-CEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECC
Q ss_conf 99991699-99999968993999988998234674137987699999899998999848980999957999954588515
Q 002471 643 CCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 721 (918)
Q Consensus 643 ~i~fspdg-~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~ 721 (918)
+..|++.. .++.+--..+.|..||.+++... .+. ....+.++.+.+++.++++ +.+| |.++|..++. .......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~-~~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGV-LTLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCC-EEEEECS
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EECC-CEEEECCCCE-EEEEEEE
T ss_conf 87598999999999878999999989989599-998-9998179899659988999-7376-3895046451-3578664
Q ss_pred ----CCCCEEEEEECCCCCEEEEEEEC---CCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CCEEEEEE
Q ss_conf ----78873699973899909999817---99299997579904578526--8118999129997999974-99199997
Q 002471 722 ----HSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILD 791 (918)
Q Consensus 722 ----h~~~V~si~fsp~~~~ll~sgs~---Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~-dg~I~i~D 791 (918)
....++.+.+.+++..++.+... .+.-.+|.+..++....+.. ....+.|++++..++++.. .+.|+.|+
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 04787661013579799999887426431333305766229968998650687640246587766898515663246764
Q ss_pred CCCC--------EEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEE-CCC
Q ss_conf 8996--------0899950799893799992999999999599-39999889899862379830489953999992-799
Q 002471 792 AETQ--------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH-PTY 861 (918)
Q Consensus 792 ~~t~--------~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s-p~g 861 (918)
+... .....+.+.......++++.+|++.++.... .|..||.. + +.+..+......+++|+|- ++.
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G---~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C---CEEEEEECSCSBEEEEEEESTTS
T ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCC-C---CEEEEECCCCCCEEEEEEECCCC
T ss_conf 5355553245357884167555666326786999989532078846885699-9---28668638998527989828999
Q ss_pred CEEEEEE
Q ss_conf 9899998
Q 002471 862 PSLLVIG 868 (918)
Q Consensus 862 ~~l~s~s 868 (918)
+.|++.+
T Consensus 253 ~~LyvTt 259 (295)
T d2ghsa1 253 SRLLVTS 259 (295)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
T ss_conf 9999997
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.52 E-value=1.8e-05 Score=46.11 Aligned_cols=179 Identities=17% Similarity=0.073 Sum_probs=101.2
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC----CCCCEEEEEECCCCCEEEEEEC----CCEEEEEEC
Q ss_conf 99858999916999999996899399998899823467413----7987699999899998999848----980999957
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRFSPSMPRLATSSF----DKTVRVWDA 709 (918)
Q Consensus 638 ~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~----h~~~V~~i~fspdg~~Lasgs~----Dg~I~Iwdl 709 (918)
...+.++++.++|.++++ +.+ .|.++|..+++....... ....++++.+.++|++.++... .+.-.+|.+
T Consensus 58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEE
T ss_conf 998179899659988999-737-638950464513578664047876610135797999998874264313333057662
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEE-----EEEE------ECCCEEEEEECCCCEE
Q ss_conf 9999545885157887369997389990999981799299997579904-----5785------2681189991299979
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-----TRVF------KGGTAQMRFQPHLGRY 778 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~-----~~~~------~~~~~~i~~sp~~~~l 778 (918)
.. +....... .-.....++|+++++.++++.+..+.|..|++..... ...+ .+....+++..+++..
T Consensus 136 ~~-g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW 213 (295)
T d2ghsa1 136 AK-GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 213 (295)
T ss_dssp ET-TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred CC-CCEEEEEE-CCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEE
T ss_conf 29-96899865-06876402465877668985156632467645355553245357884167555666326786999989
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEC-CCCCEEE
Q ss_conf 999749919999789960899950799893799992-9999999
Q 002471 779 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-PSGELLA 821 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~s-pdg~~La 821 (918)
++.-..+.|..||. .++.+..+......+++++|- ++.+.|+
T Consensus 214 va~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 214 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL 256 (295)
T ss_dssp EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred EEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEE
T ss_conf 53207884688569-99286686389985279898289999999
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.44 E-value=2.9e-05 Score=44.86 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=42.1
Q ss_pred CEEEEEECCCCCEEEEEECC-CCEEEEECCCCCEEEE--ECCCCCCEEEEEECCCCCEEEEEECC------CEEEEEECC
Q ss_conf 85899991699999999689-9399998899823467--41379876999998999989998489------809999579
Q 002471 640 KVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDAD 710 (918)
Q Consensus 640 ~V~~i~fspdg~~Latgs~D-g~I~iwd~~~~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D------g~I~Iwdl~ 710 (918)
.....++.+++++++.|+.+ ..+.+||..+..-... +... ..-.+.+..+|+++++.++.+ ..+.+||..
T Consensus 77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~ 155 (387)
T d1k3ia3 77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 155 (387)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CEEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCC-CCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCC
T ss_conf 2568999468868986368886216756755744215656642-101303553178266521366333543205663488
Q ss_pred CC
Q ss_conf 99
Q 002471 711 NP 712 (918)
Q Consensus 711 ~~ 712 (918)
+.
T Consensus 156 ~~ 157 (387)
T d1k3ia3 156 SK 157 (387)
T ss_dssp TT
T ss_pred CC
T ss_conf 89
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.42 E-value=3.2e-05 Score=44.51 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=32.3
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEECCCCC--CEEEEEEECCCC-EEEEE
Q ss_conf 99989999849919999899991899816679--768999947999-99999
Q 002471 860 TYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTETG-YVASA 908 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~--~V~~la~spdg~-~Lasg 908 (918)
.+..+++++.|+.++.+|.++++.+....... .-.-+.|..+|+ ||++.
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEE
T ss_conf 6997999778996999999998687899899996515648988999999999
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=6.4e-05 Score=42.64 Aligned_cols=203 Identities=10% Similarity=-0.021 Sum_probs=93.1
Q ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCC
Q ss_conf 6999858999916999999996-89939999889982346741379876999998999989998-489809999579999
Q 002471 636 ASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPG 713 (918)
Q Consensus 636 ~H~~~V~~i~fspdg~~Latgs-~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~I~Iwdl~~~~ 713 (918)
.+...|.+++|+...+.|+... .++.|+..+++.......+......+.++++..-+..|+.+ ...+.|.+.+++...
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~ 112 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCE
T ss_conf 68775799999858999999989999199997665872898870126420799963688688842678979988058816
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCC--EEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 5458851578873699973899909999817992--99997579904578526811899912999799997499199997
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 714 ~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~--I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~dg~I~i~D 791 (918)
....+.........+++.|....++.+-...+. |...++........
T Consensus 113 -~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i------------------------------ 161 (263)
T d1npea_ 113 -RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL------------------------------ 161 (263)
T ss_dssp -CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE------------------------------
T ss_pred -EEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEE------------------------------
T ss_conf -7777125666872799925669279953489976899966789972365------------------------------
Q ss_pred CCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-
Q ss_conf 89960899950799893799992999999999599--399998898998623798304899539999927999899998-
Q 002471 792 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG- 868 (918)
Q Consensus 792 ~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s- 868 (918)
....-.....+++++.+..|+.+... .|...++.... ....+... .....+++. +.+|+...
T Consensus 162 ---------~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~~-~~P~~lav~--~~~lYwtd~ 226 (263)
T d1npea_ 162 ---------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---RRKVLEGL-QYPFAVTSY--GKNLYYTDW 226 (263)
T ss_dssp ---------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---EEEEEECC-CSEEEEEEE--TTEEEEEET
T ss_pred ---------EEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCC---EEEEECCC-CCCEEEEEE--CCEEEEEEC
T ss_conf ---------530355553079950475899992899999999999997---69998899-986899999--999999999
Q ss_pred CCCEEEEEECCCCCEE
Q ss_conf 4991999989999189
Q 002471 869 CYQSLELWNMSENKTM 884 (918)
Q Consensus 869 ~dg~I~iwd~~~~~~~ 884 (918)
..+.|...|..+++..
T Consensus 227 ~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 227 KTNSVIAMDLAISKEM 242 (263)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCCCC
T ss_conf 9997999989899510
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.12 E-value=0.00014 Score=40.41 Aligned_cols=79 Identities=8% Similarity=0.156 Sum_probs=41.8
Q ss_pred EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCC-CCEEEEEEECCCC-
Q ss_conf 3999988989986237983048995399999279998999984991999989999189-981667-9768999947999-
Q 002471 827 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE-GLIAALAVSTETG- 903 (918)
Q Consensus 827 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~-~~V~~la~spdg~- 903 (918)
.+.-||+.++ +.+...... .....-...-.+..+++++.|+.++.||..+++++ .+.... ..-.-+.|..+|+
T Consensus 439 ~l~A~D~~tG---k~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 439 ALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp EEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CEEEEECCCC---EEEEECCCC-CCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 4688707788---373102578-888774059879989997789819999999985827998999955167799989999
Q ss_pred EEEEEE
Q ss_conf 999996
Q 002471 904 YVASAS 909 (918)
Q Consensus 904 ~Lasgs 909 (918)
||+...
T Consensus 515 yv~v~a 520 (560)
T d1kv9a2 515 YVAIMA 520 (560)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999991
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.05 E-value=0.0002 Score=39.50 Aligned_cols=50 Identities=8% Similarity=0.001 Sum_probs=31.1
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEE-EECCC-CCCEEEEEEECCCC-EEEE
Q ss_conf 279998999984991999989999189-98166-79768999947999-9999
Q 002471 858 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETG-YVAS 907 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h-~~~V~~la~spdg~-~Las 907 (918)
...+..+++++.|+.++.||.++++.+ .+... ...-.-+.|..+|+ ||+.
T Consensus 481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (596)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEE
T ss_conf 86699799978999599999999848369989999540776899899999999
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.01 E-value=0.00023 Score=39.05 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=30.4
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCC-EEEEEEECCCC-EEEE
Q ss_conf 279998999984991999989999189-98166797-68999947999-9999
Q 002471 858 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETG-YVAS 907 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~-V~~la~spdg~-~Las 907 (918)
.-.+..+++++.|+.++.||.++++.+ .+....+. -.-+.|..+|+ ||+.
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEE
T ss_conf 98699899977999199999998868579989899451677999899999999
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.98 E-value=0.00027 Score=38.62 Aligned_cols=230 Identities=11% Similarity=0.067 Sum_probs=113.8
Q ss_pred CCCEEEEEECC--CCCEEEEEECC------------------CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 99858999916--99999999689------------------93999988998234674137987699999899998999
Q 002471 638 TSKVICCHFSS--DGKLLATGGHD------------------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697 (918)
Q Consensus 638 ~~~V~~i~fsp--dg~~Latgs~D------------------g~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Las 697 (918)
...+..++..+ ...|++.++.+ +.+.++|.++.+....+... .....+.++++|+++++
T Consensus 131 ~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~ 209 (459)
T d1fwxa2 131 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFS 209 (459)
T ss_dssp CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEE
T ss_pred CCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCEEEEEEEEC-CCHHCCCCCCCCCEEEE
T ss_conf 87775012025797479973676544459998513240112268999966776698996408-97201531899998999
Q ss_pred EECCC--EEEEEECCCCCCEEEEECCCCCCEEEEE------ECCCCCEEEEEEECCCCEEEEECCCC---EEEEEE--EC
Q ss_conf 84898--0999957999954588515788736999------73899909999817992999975799---045785--26
Q 002471 698 SSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLD------FHPNKDDLICSCDGDGEIRYWSINNG---SCTRVF--KG 764 (918)
Q Consensus 698 gs~Dg--~I~Iwdl~~~~~~~~~~~~h~~~V~si~------fsp~~~~ll~sgs~Dg~I~iwdi~~~---~~~~~~--~~ 764 (918)
.+.+. .+.+.++.. ... ..+.... +.++++...+ +.+.+.|.+.. ..++.+ ..
T Consensus 210 TsyNSE~g~~l~e~ta-~e~--------D~i~V~n~~rie~av~~Gk~~ei-----ngV~VVD~~~~~~~~v~~yIPVpK 275 (459)
T d1fwxa2 210 TSYNSEKGMTLPEMTA-AEM--------DHIVVFNIAEIEKAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPIAN 275 (459)
T ss_dssp EESCTTCCSSHHHHTC-CSE--------EEEEEEEHHHHHHHHHHTCSEEE-----TTEEEEECSGG--CSSEEEEEEES
T ss_pred EECCCCCCCCHHHCCC-CCC--------EEEEEECHHHHHHHHHCCCCEEE-----CCCEEECCCCCCCCCEEEEEECCC
T ss_conf 7135568853222252-454--------18999634886876405993796-----994661542367852038986589
Q ss_pred CCEEEEEECCCCEEEEEEC-CCEEEEEECCCC------------EEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEE
Q ss_conf 8118999129997999974-991999978996------------0899950799893799992999999999599-3999
Q 002471 765 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 830 (918)
Q Consensus 765 ~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~------------~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~i 830 (918)
....+.++|++.++++++. +.++.++|++.. ....... ..-.-....|+..|....+..-| .|.-
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslfids~v~k 354 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVK 354 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred CCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC-CCCCCCCCCCCCCCEEEEEEECCCEEEE
T ss_conf 877338899997899938858957999822535665046884521796113-5767662033898429998612316999
Q ss_pred EECCCC-------CCCCEEEEECCCCCCEEEEE-----EECCCCEEEEEEC---CC----------EEEEEECCCCCE
Q ss_conf 988989-------98623798304899539999-----9279998999984---99----------199998999918
Q 002471 831 WTVGSG-------SEGECVHELSCNGNKFHSCV-----FHPTYPSLLVIGC---YQ----------SLELWNMSENKT 883 (918)
Q Consensus 831 wdl~s~-------~~~~~i~~~~~~~~~i~~i~-----~sp~g~~l~s~s~---dg----------~I~iwd~~~~~~ 883 (918)
|++... .....+..+..|-..-+.++ ..|+|++|++... |+ .-.++|+...+.
T Consensus 355 w~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m 432 (459)
T d1fwxa2 355 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 432 (459)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred EECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEE
T ss_conf 734405566446667731135433457887745767867888878998034343446678889876553797479815
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.92 E-value=0.00035 Score=37.95 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=8.0
Q ss_pred CEEEEEECC-EEEEEECCCC
Q ss_conf 999999599-3999988989
Q 002471 818 ELLASVSED-SVRVWTVGSG 836 (918)
Q Consensus 818 ~~Las~s~d-~I~iwdl~s~ 836 (918)
.++++++.| .++.+|.+++
T Consensus 476 glVf~G~~dg~l~A~Da~tG 495 (571)
T d2ad6a1 476 GLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp TEEEEECTTSEEEEEETTTC
T ss_pred CEEEEECCCCEEEEEECCCC
T ss_conf 97999778996999999998
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=0.00039 Score=37.67 Aligned_cols=160 Identities=9% Similarity=-0.022 Sum_probs=74.1
Q ss_pred CCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC-CEEEEE--ECCCCC
Q ss_conf 9985899991699999999-689939999889982346741379876999998999989998489-809999--579999
Q 002471 638 TSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVW--DADNPG 713 (918)
Q Consensus 638 ~~~V~~i~fspdg~~Latg-s~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D-g~I~Iw--dl~~~~ 713 (918)
...+.++++..-+..|+.+ ...+.|.+.+++.......+.........+++.|...+|+..... +..+|| +++...
T Consensus 78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (263)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCC
T ss_conf 26420799963688688842678979988058816777712566687279992566927995348997689996678997
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC--CEEEEEECCCCEEEEEEC-CCEEEEE
Q ss_conf 5458851578873699973899909999817992999975799045785268--118999129997999974-9919999
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAA-ENVVSIL 790 (918)
Q Consensus 714 ~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~--~~~i~~sp~~~~ll~~~~-dg~I~i~ 790 (918)
. .......-....+|++.+.++.++++-...+.|...++....+...+.+. ...+++ +++.++.+.. .+.|...
T Consensus 158 ~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav--~~~~lYwtd~~~~~I~~~ 234 (263)
T d1npea_ 158 R-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAM 234 (263)
T ss_dssp C-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEE
T ss_pred C-EEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEE--ECCEEEEEECCCCEEEEE
T ss_conf 2-3655303555530799504758999928999999999999976999889998689999--999999999999979999
Q ss_pred ECCCCEEEEE
Q ss_conf 7899608999
Q 002471 791 DAETQACRLS 800 (918)
Q Consensus 791 D~~t~~~~~~ 800 (918)
|..+++....
T Consensus 235 ~~~~g~~~~~ 244 (263)
T d1npea_ 235 DLAISKEMDT 244 (263)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCCCCEE
T ss_conf 8989951069
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00065 Score=36.23 Aligned_cols=220 Identities=8% Similarity=-0.043 Sum_probs=95.0
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC---CEEEEECCCCCCEEEEEECCCCC
Q ss_conf 399998899823467413798769999989999899984-89809999579999---54588515788736999738999
Q 002471 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 661 ~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~I~Iwdl~~~~---~~~~~~~~h~~~V~si~fsp~~~ 736 (918)
.|+..++++......+. ....+..++|.+....|+... .++.|+..+++... .....+......+.+|++.+.++
T Consensus 11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred EEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf 18999899985266417-99855999998089999999997997999993578887614899848999854689864265
Q ss_pred EEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEEC--CCEEEEEECCCCEEEEEECCCCCCEEEE
Q ss_conf 0999981799299997579904578526---8118999129997999974--9919999789960899950799893799
Q 002471 737 DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSV 811 (918)
Q Consensus 737 ~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~I~si 811 (918)
.+.++....+.|.+.++....+...... ....+.+.+..+.++.+.. .+.|...++............-.....+
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl 169 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEE
T ss_conf 28999548999985764895378887279988336999800394887126997302686368883441200453201699
Q ss_pred EECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEE
Q ss_conf 992999999999599--399998898998623798304899539999927999899998-4991999989999189
Q 002471 812 CWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTM 884 (918)
Q Consensus 812 ~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~ 884 (918)
++++.+..|+.+... .|...++..... ..+............+++. +.+|+... .++.|+..+..++...
T Consensus 170 ~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 242 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEECCCCEEEEECCCCCEEEEEECCCCCE-EEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCE
T ss_conf 86133569999528967999998999977-9999389855664799998--9999999899996999999899615
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.71 E-value=0.00076 Score=35.81 Aligned_cols=240 Identities=8% Similarity=0.033 Sum_probs=127.4
Q ss_pred CEEEEEECCCCCEEEEEEC-----CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC-------------
Q ss_conf 8589999169999999968-----9939999889982346741379876999998999989998489-------------
Q 002471 640 KVICCHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------------- 701 (918)
Q Consensus 640 ~V~~i~fspdg~~Latgs~-----Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D------------- 701 (918)
.+..+++|||++++|.+-. ...|+++|+.+++.+...-. ......+.|.+|+..|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCC-CCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 33425853789879999556667210467741676403144222-43236417857998999997626667654433345
Q ss_pred ---CEEEEEECCCCCCE-EEEECCC--CCCEEEEEECCCCCEEEEEEEC--CCC--EEEEECCCCE--------EEEEEE
Q ss_conf ---80999957999954-5885157--8873699973899909999817--992--9999757990--------457852
Q 002471 702 ---KTVRVWDADNPGYS-LRTFMGH--SASVMSLDFHPNKDDLICSCDG--DGE--IRYWSINNGS--------CTRVFK 763 (918)
Q Consensus 702 ---g~I~Iwdl~~~~~~-~~~~~~h--~~~V~si~fsp~~~~ll~sgs~--Dg~--I~iwdi~~~~--------~~~~~~ 763 (918)
..|..|.+.+.... ...+... ...+..+..+.++..+++.... +.. +.+.++.... ....+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 78633899988988653100223235772577530268762456876436776479999517776455663101258304
Q ss_pred CCCEEEE-EECCCCEEEEEEC----CCEEEEEECCCCEE---EEEECCCCCCEEEEEECCCCCEE-EEEECC---EEEEE
Q ss_conf 6811899-9129997999974----99199997899608---99950799893799992999999-999599---39999
Q 002471 764 GGTAQMR-FQPHLGRYLAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELL-ASVSED---SVRVW 831 (918)
Q Consensus 764 ~~~~~i~-~sp~~~~ll~~~~----dg~I~i~D~~t~~~---~~~l~~h~~~I~si~~spdg~~L-as~s~d---~I~iw 831 (918)
....... +...+..++..+. ++.|...++..... ...+..+...+..-.+...+.+| +....+ .|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~ 364 (430)
T d1qfma1 285 NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (430)
T ss_dssp SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEECCCEEEEEEE
T ss_conf 65562687713773023245765655415873477876554158951367525556789779999999991887089999
Q ss_pred ECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECC----CEEEEEECCCCCE
Q ss_conf 889899862379830489953999992799989999849----9199998999918
Q 002471 832 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKT 883 (918)
Q Consensus 832 dl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d----g~I~iwd~~~~~~ 883 (918)
++..+. .........+.+..+...++...+...-.+ ..++.||+.+++.
T Consensus 365 ~~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 365 DLATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp ETTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred ECCCCC---EEEECCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCC
T ss_conf 899995---88854888716864148988998999981899987699999999985
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.63 E-value=0.00098 Score=35.11 Aligned_cols=246 Identities=11% Similarity=0.159 Sum_probs=127.3
Q ss_pred CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf 93999988998234674137987699999899998999848980999957999954588515788736999738999099
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 739 (918)
Q Consensus 660 g~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll 739 (918)
..|.|.|+.+.....+..- ..-+.-.+|..+.||.-+ ..++.|||+++ +..++.+. ....|.--.|..+. .+
T Consensus 45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnlet-K~klks~~-~~e~VvfWkWis~~--~L 116 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHT-MTDDVTFWKWISLN--TV 116 (327)
T ss_dssp EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTT-TEEEEEEE-CSSCCCEEEESSSS--EE
T ss_pred CEEEEEECCCCCCCEECCC---CHHHHHCCCCCCEEEEEC-CCEEEEEEHHH-HHHHCEEE-CCCCCEEEEECCCC--EE
T ss_conf 4399998899876331443---616653088875799962-88689984468-22111587-68885799944798--89
Q ss_pred EEEECCCCEEEEECCCC-EEEEEEECC-------CEEEEEECCCCEEEEEEC-------CCEEEEEECCCCEEEEEECCC
Q ss_conf 99817992999975799-045785268-------118999129997999974-------991999978996089995079
Q 002471 740 CSCDGDGEIRYWSINNG-SCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQGH 804 (918)
Q Consensus 740 ~sgs~Dg~I~iwdi~~~-~~~~~~~~~-------~~~i~~sp~~~~ll~~~~-------dg~I~i~D~~t~~~~~~l~~h 804 (918)
+.. .+..|+-|+++.. ...+.|..+ +.....+++.++++..+- .|.+.+|..+.. .-..+++|
T Consensus 117 ~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGh 194 (327)
T d1utca2 117 ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 194 (327)
T ss_dssp EEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred EEE-CCCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCC-CCCCCCCE
T ss_conf 999-1881699735699985266232101248638998989999889999571378830588889980228-67523203
Q ss_pred CCCEEEEEECCCC---CEEEEEE---CC-EEEEEECCCCCCC-----CE-EEEECC---CCCCEEEEEEECCCCEEEEEE
Q ss_conf 9893799992999---9999995---99-3999988989986-----23-798304---899539999927999899998
Q 002471 805 TKPIDSVCWDPSG---ELLASVS---ED-SVRVWTVGSGSEG-----EC-VHELSC---NGNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 805 ~~~I~si~~spdg---~~Las~s---~d-~I~iwdl~s~~~~-----~~-i~~~~~---~~~~i~~i~~sp~g~~l~s~s 868 (918)
......+.+..+. .+|+.+. .. ++.|.++...... +. +..+.. ...-..++..++....+++.+
T Consensus 195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT 274 (327)
T d1utca2 195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 274 (327)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEE
T ss_conf 46568887079988730999998789874799998688755788875326887779634688477999643379999996
Q ss_pred CCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEE
Q ss_conf 4991999989999189-9816679768999947999999996698399
Q 002471 869 CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 915 (918)
Q Consensus 869 ~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~ 915 (918)
..|.|++||+.++.++ .-+-....|...+-..+..-++....+|.|.
T Consensus 275 K~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 275 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 675899997566628999404788448962678886089987897699
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.47 E-value=0.0016 Score=33.74 Aligned_cols=81 Identities=10% Similarity=0.135 Sum_probs=45.1
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCC-EEEEEEECCCC
Q ss_conf 919999789960899950799893799992999999999599-3999988989986237983048995-39999927999
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYP 862 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~-i~~i~~sp~g~ 862 (918)
+.|.-+|..+++.+..+.... +..+-...-.+.+++.++.| .++.||.+++ +.+.++...... -.-+.|..+|+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tG---e~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG---EALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEEECCCCEEEEECCCCC-CCCCCEEEECCCEEEEECCCCCEEEEECCCC---CEEEEEECCCCCCCCCEEEEECCE
T ss_conf 646887077883731025788-8877405987998999778981999999998---582799899995516779998999
Q ss_pred -EEEEEEC
Q ss_conf -8999984
Q 002471 863 -SLLVIGC 869 (918)
Q Consensus 863 -~l~s~s~ 869 (918)
||++...
T Consensus 514 qyv~v~aG 521 (560)
T d1kv9a2 514 QYVAIMAG 521 (560)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
T ss_conf 99999917
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.0017 Score=33.54 Aligned_cols=202 Identities=10% Similarity=-0.011 Sum_probs=123.0
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCC----CEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECC
Q ss_conf 999858999916999999996-8993999988998----2346741379876999998999989998-489809999579
Q 002471 637 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDAD 710 (918)
Q Consensus 637 H~~~V~~i~fspdg~~Latgs-~Dg~I~iwd~~~~----~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~I~Iwdl~ 710 (918)
....+.+++|+...+.|+-.. .++.|+..+++.. .....+......+..+++...+..|+.+ ...+.|.+.+++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECC
T ss_conf 99855999998089999999997997999993578887614899848999854689864265289995489999857648
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEEE-CCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEEC-CC
Q ss_conf 999545885157887369997389990999981-799299997579904578526---8118999129997999974-99
Q 002471 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN 785 (918)
Q Consensus 711 ~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs-~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~-dg 785 (918)
. ......+.........+++.|....++++.. ..+.|...++........... ....+++.+..+.++.+.. .+
T Consensus 108 g-~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~ 186 (266)
T d1ijqa1 108 G-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (266)
T ss_dssp S-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred C-CEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEEEEECCCCEEEEECCCCC
T ss_conf 9-537888727998833699980039488712699730268636888344120045320169986133569999528967
Q ss_pred EEEEEECCCCEEEEEECC--CCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCC
Q ss_conf 199997899608999507--99893799992999999999599-39999889899862
Q 002471 786 VVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 840 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~--h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~ 840 (918)
.|...+.........+.. ......++++.. +.++++-..+ .|...+..++....
T Consensus 187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~g~~~~ 243 (266)
T d1ijqa1 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN 243 (266)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEEECCCCCEEEEEECCCCCCCCEEEEEEC-CEEEEEECCCCEEEEEECCCCCCEE
T ss_conf 99999899997799993898556647999989-9999998999969999998996159
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.37 E-value=0.0021 Score=32.95 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=29.7
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEC
Q ss_conf 919999789960899950799893799992999999999599-39999889899862379830
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 846 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~ 846 (918)
|.|.-||..+++.+..... ..++.+-..+-.+.+++.++.| .++.||.+++ +.+.++.
T Consensus 453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG---e~LW~~~ 511 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG---DLLWKFK 511 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEE
T ss_pred CEEEEEECCCCCEECCCCC-CCCCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEE
T ss_conf 5389980788856233278-888744146866997999789995999999998---4836998
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.14 E-value=0.0038 Score=31.36 Aligned_cols=270 Identities=10% Similarity=0.057 Sum_probs=140.5
Q ss_pred CEEEEEECCCCCEEEEEECCC-----------CEEEEECCCCCEE--EEEC-CCCCCEEEEEECCCCCEEEEEECC-CEE
Q ss_conf 858999916999999996899-----------3999988998234--6741-379876999998999989998489-809
Q 002471 640 KVICCHFSSDGKLLATGGHDK-----------KAVLWHTDTLKSK--TNLE-EHSSLITDVRFSPSMPRLATSSFD-KTV 704 (918)
Q Consensus 640 ~V~~i~fspdg~~Latgs~Dg-----------~I~iwd~~~~~~~--~~l~-~h~~~V~~i~fspdg~~Lasgs~D-g~I 704 (918)
.+.......+|++++.|+.+. .+.+||..+..-. .... .+........+.+++.+++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred CCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCE
T ss_conf 01789992599999998405766678877606899998888968666778987445256899946886898636888621
Q ss_pred EEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECC------CCEEEEECCCCEEEEEEEC--------------
Q ss_conf 99957999954588515788736999738999099998179------9299997579904578526--------------
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG-------------- 764 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~D------g~I~iwdi~~~~~~~~~~~-------------- 764 (918)
.+||..+..............-.+.+..+++. +++.++.+ ..+.+||..+.+....-..
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEECCCC-EEEECCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf 67567557442156566421013035531782-66521366333543205663488895511588764431134665136
Q ss_pred ---CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEC--C----CC--CCEEEEEE-CCCCCEEEEEECC------
Q ss_conf ---81189991299979999749919999789960899950--7----99--89379999-2999999999599------
Q 002471 765 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--G----HT--KPIDSVCW-DPSGELLASVSED------ 826 (918)
Q Consensus 765 ---~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~----h~--~~I~si~~-spdg~~Las~s~d------ 826 (918)
....+...+++..++.+...+.+.+++..+........ . +. ..-.++.+ ..++++++.++..
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 50422699970798778746867747814866671731665566766576322263788613588247887536788775
Q ss_pred ---EEEEEECCCCCCCCEEEE-EC--CCCCCEEEEEEECCCCEEEEEECC-----------CEEEEEECCCCCEEEECCC
Q ss_conf ---399998898998623798-30--489953999992799989999849-----------9199998999918998166
Q 002471 827 ---SVRVWTVGSGSEGECVHE-LS--CNGNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTMTLTAH 889 (918)
Q Consensus 827 ---~I~iwdl~s~~~~~~i~~-~~--~~~~~i~~i~~sp~g~~l~s~s~d-----------g~I~iwd~~~~~~~~~~~h 889 (918)
...++++........... .. .......+.+..++++.+++++.+ ..+.+||..+.+-..+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred CCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECCCC
T ss_conf 21000001111135678840603665665434335660587499988845676688994701079897999918878899
Q ss_pred C--CC-EEEEEEECCCCEEEEEEC
Q ss_conf 7--97-689999479999999966
Q 002471 890 E--GL-IAALAVSTETGYVASASH 910 (918)
Q Consensus 890 ~--~~-V~~la~spdg~~Lasgs~ 910 (918)
. .. -....+.+|+++++.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCEEEEEECCCCEEEEEECC
T ss_conf 975531279999889999999698
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.00 E-value=0.005 Score=30.57 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=41.3
Q ss_pred EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCC-CCEEEEEEECCCC-
Q ss_conf 3999988989986237983048995399999279998999984991999989999189-981667-9768999947999-
Q 002471 827 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE-GLIAALAVSTETG- 903 (918)
Q Consensus 827 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~-~~V~~la~spdg~- 903 (918)
.|.-+|+.++ +.+...... .++..-.....+..+++++.|+.++.||.++++++ .+.... ..-.-+.|..+|+
T Consensus 467 ~l~AiD~~TG---~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 467 SLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEECTTTC---CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EEEEECCCCC---CEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 5999807899---587326779-997450169769869996799969999999986867988999962167799989999
Q ss_pred EEEEE
Q ss_conf 99999
Q 002471 904 YVASA 908 (918)
Q Consensus 904 ~Lasg 908 (918)
||+..
T Consensus 543 Yv~i~ 547 (582)
T d1flga_ 543 YLGVT 547 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.52 E-value=0.011 Score=28.30 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=46.0
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCE-EEEEEECCCC
Q ss_conf 919999789960899950799893799992999999999599-39999889899862379830489953-9999927999
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF-HSCVFHPTYP 862 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i-~~i~~sp~g~ 862 (918)
|.|.-||..+++.+..+..... ...-...-.+.++++++.| .++.||.+++ +.+.++....... .-+.|..+|+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lstagglVF~G~~dg~l~A~Da~TG---e~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTTAGNVVFQGTADGRLVAYHAATG---EKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEECCCCCCEEEEECCCCC-CCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCEEEEECCE
T ss_conf 6178757877866705168898-877607986998999779991999999988---685799898994516779998999
Q ss_pred -EEEEEEC
Q ss_conf -8999984
Q 002471 863 -SLLVIGC 869 (918)
Q Consensus 863 -~l~s~s~ 869 (918)
||++...
T Consensus 533 QYv~v~~G 540 (573)
T d1kb0a2 533 QYVSVAVG 540 (573)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
T ss_conf 99999937
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.28 E-value=0.016 Score=27.39 Aligned_cols=186 Identities=16% Similarity=0.218 Sum_probs=105.8
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEC------CCCCEEEEEEC--C--CEEEEEECCCCCCEEE
Q ss_conf 699999999689939999889982346741379876999998------99998999848--9--8099995799995458
Q 002471 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS------PSMPRLATSSF--D--KTVRVWDADNPGYSLR 717 (918)
Q Consensus 648 pdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fs------pdg~~Lasgs~--D--g~I~Iwdl~~~~~~~~ 717 (918)
|+..+++....++-|++||+. ++.+..+.. +.+..|..- .....|++++. + .+|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCEEEECCC-CCEEEECCC--CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCC
T ss_conf 672389997586887999189-968774036--77673243366435775068999957867630599998447666311
Q ss_pred EECCC-------CCCEEEEEE--CCC-CCEEEEEEECCCCEEEEECCC---C----EEEEEEE--CCCEEEEEECCCCEE
Q ss_conf 85157-------887369997--389-990999981799299997579---9----0457852--681189991299979
Q 002471 718 TFMGH-------SASVMSLDF--HPN-KDDLICSCDGDGEIRYWSINN---G----SCTRVFK--GGTAQMRFQPHLGRY 778 (918)
Q Consensus 718 ~~~~h-------~~~V~si~f--sp~-~~~ll~sgs~Dg~I~iwdi~~---~----~~~~~~~--~~~~~i~~sp~~~~l 778 (918)
.+... ...++.+|+ .+. +..+++....+|.+..|.+.. + +.++.+. .....+.+....+.|
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCE
T ss_conf 24665543345667656999774277780799997588608999997478972555763035888862169981788949
Q ss_pred EEEECCCEEEEEECCC-----CEEEEEECC--CCCCEEEEEECC--CCC-EEEEEECC--EEEEEECCCC
Q ss_conf 9997499199997899-----608999507--998937999929--999-99999599--3999988989
Q 002471 779 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG 836 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t-----~~~~~~l~~--h~~~I~si~~sp--dg~-~Las~s~d--~I~iwdl~s~ 836 (918)
+++-.+..|..++.+- ...+....+ ....+..++.-. ++. +|++.+.+ +..+||....
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 9954755238888045777662243113675445785453799847998599997379976999956788
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.13 E-value=0.019 Score=26.93 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=47.6
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCC-EEEEEEECCC
Q ss_conf 9919999789960899950799893799992999999999599-3999988989986237983048995-3999992799
Q 002471 784 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTY 861 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~-i~~i~~sp~g 861 (918)
.|.|.-+|+.+++.+..+.... ++..-.....+.++++++.| .++.||.+++ +.+.++...... -.-+.|..+|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TG---e~LW~~~~~~~~~~~P~ty~~~G 540 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG---KELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETT
T ss_pred CCEEEEECCCCCCEEEECCCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCEEEEECC
T ss_conf 7759998078995873267799-9745016976986999679996999999998---68679889999621677999899
Q ss_pred C-EEEEEE
Q ss_conf 9-899998
Q 002471 862 P-SLLVIG 868 (918)
Q Consensus 862 ~-~l~s~s 868 (918)
+ |+++..
T Consensus 541 ~qYv~i~a 548 (582)
T d1flga_ 541 EQYLGVTV 548 (582)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
T ss_conf 99999993
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.08 E-value=0.02 Score=26.76 Aligned_cols=217 Identities=8% Similarity=0.031 Sum_probs=84.5
Q ss_pred CEEEEEECCCCCEEEEEE-CC----CEEEEEECCCCCCEEE-EECCCCCCEEEEEECCCCCEEEEEEEC-----------
Q ss_conf 769999989999899984-89----8099995799995458-851578873699973899909999817-----------
Q 002471 682 LITDVRFSPSMPRLATSS-FD----KTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDG----------- 744 (918)
Q Consensus 682 ~V~~i~fspdg~~Lasgs-~D----g~I~Iwdl~~~~~~~~-~~~~h~~~V~si~fsp~~~~ll~sgs~----------- 744 (918)
.+..++++|++++|+.+- .+ ..|+++|+.+ +..+. .+.. .....+.|.+++..++++.-.
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t-g~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~ 202 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCC-CEECCCCCCC--CCCCCEEECCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 33425853789879999556667210467741676-4031442224--32364178579989999976266676544333
Q ss_pred ----CCCEEEEECCCCEE--EEEEEC--C---CEEEEEECCCCEEEEEEC---CC--EEEEEECCCCE--------EEEE
Q ss_conf ----99299997579904--578526--8---118999129997999974---99--19999789960--------8999
Q 002471 745 ----DGEIRYWSINNGSC--TRVFKG--G---TAQMRFQPHLGRYLAAAA---EN--VVSILDAETQA--------CRLS 800 (918)
Q Consensus 745 ----Dg~I~iwdi~~~~~--~~~~~~--~---~~~i~~sp~~~~ll~~~~---dg--~I~i~D~~t~~--------~~~~ 800 (918)
...|.+|.+.+... ...+.. . ...+..+.++..++.... .. .+.+.|..... ....
T Consensus 203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 282 (430)
T d1qfma1 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (430)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 45786338999889886531002232357725775302687624568764367764799995177764556631012583
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCC--EE
Q ss_conf 50799893799992999999999599----399998898998623798304899539999927999899998-499--19
Q 002471 801 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQ--SL 873 (918)
Q Consensus 801 l~~h~~~I~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg--~I 873 (918)
+......+..+.. .++.+++....+ .|...++...........+..+...+..-.+...+.+|++.. .++ .|
T Consensus 283 ~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l 361 (430)
T d1qfma1 283 IDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (430)
T ss_dssp ECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred ECCCCCCEEEEEC-CCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEECCCEEEE
T ss_conf 0465562687713-773023245765655415873477876554158951367525556789779999999991887089
Q ss_pred EEEECCCCCEEEE-CCCCCCEEEEEEECCC
Q ss_conf 9998999918998-1667976899994799
Q 002471 874 ELWNMSENKTMTL-TAHEGLIAALAVSTET 902 (918)
Q Consensus 874 ~iwd~~~~~~~~~-~~h~~~V~~la~spdg 902 (918)
++++..++....+ ....+.|..+...++.
T Consensus 362 ~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~ 391 (430)
T d1qfma1 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKD 391 (430)
T ss_dssp EEEETTTCCEEEEECCCSSEEEEEECCTTC
T ss_pred EEEECCCCCEEEECCCCCCEEEECCCCCCC
T ss_conf 999899995888548887168641489889
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.06 E-value=0.02 Score=26.72 Aligned_cols=226 Identities=11% Similarity=0.178 Sum_probs=145.1
Q ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCC
Q ss_conf 99991699999999689939999889982346741379876999998999989998489809999579999545885157
Q 002471 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 722 (918)
Q Consensus 643 ~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~h 722 (918)
+.-.+|..+.||.-+ ..++.+||+++...++.+.-. ..|.--.|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred HHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECC-CCCEEEEECCC-CEEEEEC-CCCEEEECCCCCCCCHHHHHHC
T ss_conf 653088875799962-886899844682211158768-88579994479-8899991-8816997356999852662321
Q ss_pred C----CCEEEEEECCCCCEEEEEEEC------CCCEEEEECCCCEEEEEEECCCEEEE-EECCC----CEEEEEEC----
Q ss_conf 8----873699973899909999817------99299997579904578526811899-91299----97999974----
Q 002471 723 S----ASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA---- 783 (918)
Q Consensus 723 ~----~~V~si~fsp~~~~ll~sgs~------Dg~I~iwdi~~~~~~~~~~~~~~~i~-~sp~~----~~ll~~~~---- 783 (918)
. ..|.....+++.+.++++|=. .|.+.+|..+.. .-..++++..+.. +..++ ..+++-+.
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 221 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 221 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCC-CCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCC
T ss_conf 01248638998989999889999571378830588889980228-67523203465688870799887309999987898
Q ss_pred CCEEEEEECCCC--------EEEEEEC----CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCC
Q ss_conf 991999978996--------0899950----799893799992999999999599-399998898998623798304899
Q 002471 784 ENVVSILDAETQ--------ACRLSLQ----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 784 dg~I~i~D~~t~--------~~~~~l~----~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
.+.+.+.++... +....+. ...+--.++..++...+++..+.. .+.+||+.++ .++..-+....
T Consensus 222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs~~ 298 (327)
T d1utca2 222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE 298 (327)
T ss_dssp EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCC
T ss_conf 747999986887557888753268877796346884779996433799999966758999975666---28999404788
Q ss_pred CEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 53999992799989999849919999
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg~I~iw 876 (918)
.+...+-+.+..-+++...+|.|...
T Consensus 299 ~iF~~a~~~~~~Gi~~VNr~GqVl~v 324 (327)
T d1utca2 299 TIFVTAPHEATAGIIGVNRKGQVLSV 324 (327)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred CEEEECCCCCCCEEEEECCCCEEEEE
T ss_conf 44896267888608998789769999
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.024 Score=26.22 Aligned_cols=94 Identities=9% Similarity=0.050 Sum_probs=56.3
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEE
Q ss_conf 85899991699999999689939999889982346741379876999998999989998489809999579999545885
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 640 ~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~ 719 (918)
.|..++|+.| .|++.. ++.+..++............-...+..+.++|. .++....++.+.++++.+.. .....
T Consensus 88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~-~~~~~ 161 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-TKQLA 161 (381)
T ss_dssp TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-EEEEE
T ss_pred CEEEEEEECC--EEEEEE-CCCEEEEEEECCCCCCCCCCCCCCCCCEECCCC--EEEEEECCCCEEEEEECCCC-CCCCC
T ss_conf 8689986189--899995-897899985100145446554556111021886--06999658977899941586-44444
Q ss_pred C-----CCCCCEEEEEECCCCCEEE
Q ss_conf 1-----5788736999738999099
Q 002471 720 M-----GHSASVMSLDFHPNKDDLI 739 (918)
Q Consensus 720 ~-----~h~~~V~si~fsp~~~~ll 739 (918)
. .-...+.+++|++.+..++
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~v 186 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQSF 186 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCCEEEECCCCEEEEEECCCEEEE
T ss_conf 7752387338926999968968999
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=94.30 E-value=0.071 Score=23.26 Aligned_cols=221 Identities=12% Similarity=0.003 Sum_probs=90.2
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEE
Q ss_conf 85899991699999999689939999889982346741379876999998999989998489809999579999545885
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 640 ~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~ 719 (918)
.|..|+.... ..+.-. ||.|+.|-....-.+-.-......|..|..-. ...++ -.|+.+..|.....+.... .
T Consensus 27 ~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~-~~~~a--l~dg~v~~wG~~~~gq~~~-~ 99 (273)
T d1jtdb_ 27 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-YHSLA--LKDGEVIAWGGNEDGQTTV-P 99 (273)
T ss_dssp SEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS-SEEEE--EETTEEEEEECCTTSTTCC-C
T ss_pred CCEEEECCCC--EEEEEE-CCEEEEEECCCCCCEEEEECCCCCCEEEECCC-CCEEE--EEEEEEECCCCCCCEEECC-C
T ss_conf 8599985679--899998-99899985899986002002346645996599-72551--4320130268873001022-3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 15788736999738999099998179929999757990457852681189991299979999749919999789960899
Q 002471 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 799 (918)
Q Consensus 720 ~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~ 799 (918)
......+..+..... ..+ .. .|+.+..|.................+.........++...++.++.|.........
T Consensus 100 ~~~~~~~~~i~~~~~--~~~-~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~G~~~~g~~~ 175 (273)
T d1jtdb_ 100 AEARSGVDAIAAGAW--ASY-AL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTT 175 (273)
T ss_dssp GGGGSSCCEEEEETT--EEE-EE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECCTTSTTS
T ss_pred CCCCCCEEEEEEECC--CCC-CC-CCCCCEECCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCC
T ss_conf 334420147863011--111-11-23320000127988343403577317887503225645236641675213578655
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 95079989379999299999999959939999889899862379830489953999992799989999849919999899
Q 002471 800 SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 800 ~l~~h~~~I~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 879 (918)
........|..|+... ...+...++.|+.|=......... . ......|..++..... .++. .|+.|+.|-..
T Consensus 176 ~~~~~~~~v~~Is~G~--~h~~~l~dG~v~~WG~n~~Gql~~--~-~~~~~~v~~I~~G~~~--~~~l-~~g~v~~WG~~ 247 (273)
T d1jtdb_ 176 VPAEAQSGVDDVAGGI--FHSLALKDGKVIAWGDNRYKQTTV--P-TEALSGVSAIASGEWY--SLAL-KNGKVIAWGSS 247 (273)
T ss_dssp CCGGGSSSEEEEEECS--SEEEEEETTEEEEEECCTTSTTCC--C-GGGGSSCCEEEECSSC--EEEE-ETTEEEEESTT
T ss_pred CCCCCCCCCCCEECCC--EEEEEEECCCEEECCCCCCCCCCC--C-CCCCCCCEEEEECCCE--EEEE-ECCEEEEECCC
T ss_conf 3332467741110302--036788568489837999896078--7-0578995899959056--9999-89999997899
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.92 E-value=0.084 Score=22.78 Aligned_cols=140 Identities=11% Similarity=0.143 Sum_probs=70.4
Q ss_pred CEEEEECC-CCCEEEEECCC-------CCCEEEEEE--CCC-CC-EEEEEECCCEEEEEECCCC--C----CEEEEECCC
Q ss_conf 39999889-98234674137-------987699999--899-99-8999848980999957999--9----545885157
Q 002471 661 KAVLWHTD-TLKSKTNLEEH-------SSLITDVRF--SPS-MP-RLATSSFDKTVRVWDADNP--G----YSLRTFMGH 722 (918)
Q Consensus 661 ~I~iwd~~-~~~~~~~l~~h-------~~~V~~i~f--spd-g~-~Lasgs~Dg~I~Iwdl~~~--~----~~~~~~~~h 722 (918)
+|.+|.+. ....+..+... ...+..+|+ ++. +. ++++...+|.+..|.+... + ..++.+. .
T Consensus 100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~ 178 (353)
T d1h6la_ 100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-M 178 (353)
T ss_dssp EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-C
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCC-C
T ss_conf 599998447666311246655433456676569997742777807999975886089999974789725557630358-8
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC-----EEEEE-----EECCCEEEEEE--CC-CCEEEEEEC-CCEEE
Q ss_conf 8873699973899909999817992999975799-----04578-----52681189991--29-997999974-99199
Q 002471 723 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----SCTRV-----FKGGTAQMRFQ--PH-LGRYLAAAA-ENVVS 788 (918)
Q Consensus 723 ~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~-----~~~~~-----~~~~~~~i~~s--p~-~~~ll~~~~-dg~I~ 788 (918)
...+..+.+......|+ .+-++..|..++.... ..+.. +...+.-+... .+ .+++++++. +++..
T Consensus 179 ~~q~EGCVvDde~~~Ly-isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~ 257 (353)
T d1h6la_ 179 NSQTEGMAADDEYGSLY-IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA 257 (353)
T ss_dssp SSCEEEEEEETTTTEEE-EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred CCCCCEEEEECCCCCEE-EECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEE
T ss_conf 88621699817889499-95475523888804577766224311367544578545379984799859999737997699
Q ss_pred EEECCCC-EEEEEEC
Q ss_conf 9978996-0899950
Q 002471 789 ILDAETQ-ACRLSLQ 802 (918)
Q Consensus 789 i~D~~t~-~~~~~l~ 802 (918)
+||.... ..+..|.
T Consensus 258 vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 258 IYERQGQNKYVADFQ 272 (353)
T ss_dssp EEESSTTCCEEEEEE
T ss_pred EEECCCCCCCCCEEE
T ss_conf 995678865332599
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.73 E-value=0.13 Score=21.59 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=14.0
Q ss_pred EEEEECCCCCEEEEEEC------------CCCEEEEECCCC
Q ss_conf 89999169999999968------------993999988998
Q 002471 642 ICCHFSSDGKLLATGGH------------DKKAVLWHTDTL 670 (918)
Q Consensus 642 ~~i~fspdg~~Latgs~------------Dg~I~iwd~~~~ 670 (918)
-++...++|..+++++. .|.|.++|+.+.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~ 78 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEK 78 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSS
T ss_pred CEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 20799799869999657557777788788876999966889
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.60 E-value=0.18 Score=20.74 Aligned_cols=221 Identities=10% Similarity=0.019 Sum_probs=116.2
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEE-CCCCCEEEEE------ECCCEEEEEECCCCCCEEEEECC
Q ss_conf 9999999968993999988998234674137987699999-8999989998------48980999957999954588515
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SPSMPRLATS------SFDKTVRVWDADNPGYSLRTFMG 721 (918)
Q Consensus 649 dg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~f-spdg~~Lasg------s~Dg~I~Iwdl~~~~~~~~~~~~ 721 (918)
+.++|+++...|.|.++-+..++.+..-+. +|..... .+.-.++..+ -.-..|.+.++..+++..+.-..
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCCEEEEEECCCEEEEEEEECCEEEEEECC---CCCCCCCCCCCCCEEEEEEEHHCCCCEEEEEEECCCCCCEEEEECCC
T ss_conf 985899983266688999968878997416---66676888667646889760124700024898705888802473377
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEC--CCE--EEEEECCCCEE
Q ss_conf 78873699973899909999817992999975799045785268118999129997999974--991--99997899608
Q 002471 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--ENV--VSILDAETQAC 797 (918)
Q Consensus 722 h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~--dg~--I~i~D~~t~~~ 797 (918)
..-.|.++++. ++.++++|+....+.+|-++.++..+....+.....-.-.++.++-.+. .+. +.+-|+.++..
T Consensus 102 k~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l 179 (313)
T d2hu7a1 102 KPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 179 (313)
T ss_dssp CSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred CEEEEEEEEEC--CCEEEEECCCCCCEEEEEEECCCEEEECCCCCCCEEEECCCCEEEEEEEECCCCCEEEEEECCCCCE
T ss_conf 40799886526--8338996556783379998289554300389940477525776888766459852589984366977
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEEC------CCCCCEEEEEEECCCCEEEEE
Q ss_conf 99950799893799992999999999599----39999889899862379830------489953999992799989999
Q 002471 798 RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELS------CNGNKFHSCVFHPTYPSLLVI 867 (918)
Q Consensus 798 ~~~l~~h~~~I~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~------~~~~~i~~i~~sp~g~~l~s~ 867 (918)
..+....+.++...+.++.+. ++.-+. ....+|++++.-.. .++. -....|.-+-+.|+++.++++
T Consensus 180 -ri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yer--ve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iia 255 (313)
T d2hu7a1 180 -RVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVED--LELPSKDFSSYRPTAITWLGYLPDGRLAVVA 255 (313)
T ss_dssp -EEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEE--CCCSSCHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred -EEECCCCCCCCCEEECCCCEE-EECCCCCCCEEEEEEECCCCCEEE--EECCCCCCEEECCEEEEEEEECCCCCEEEEE
T ss_conf -985478884114057368655-404477771579999456693555--2157444203221377741137877279998
Q ss_pred ECCCEEEEEEC
Q ss_conf 84991999989
Q 002471 868 GCYQSLELWNM 878 (918)
Q Consensus 868 s~dg~I~iwd~ 878 (918)
-.||.-.+|.-
T Consensus 256 krdG~s~lF~n 266 (313)
T d2hu7a1 256 RREGRSAVFID 266 (313)
T ss_dssp EETTEEEEEET
T ss_pred ECCCCHHEEEC
T ss_conf 20770222456
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.48 E-value=0.27 Score=19.56 Aligned_cols=108 Identities=9% Similarity=-0.002 Sum_probs=51.0
Q ss_pred CCCCC-EEEEEE---CCCCEEEEECCCCC--E--EEEECC-CCCCEEEEEECCCCCEEEEEE--C-------------CC
Q ss_conf 16999-999996---89939999889982--3--467413-798769999989999899984--8-------------98
Q 002471 647 SSDGK-LLATGG---HDKKAVLWHTDTLK--S--KTNLEE-HSSLITDVRFSPSMPRLATSS--F-------------DK 702 (918)
Q Consensus 647 spdg~-~Latgs---~Dg~I~iwd~~~~~--~--~~~l~~-h~~~V~~i~fspdg~~Lasgs--~-------------Dg 702 (918)
..++. +|++.. ...+|.+|++.... . +.++.. .....++|.+..++..++|-. . -+
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 58996899998266787606999996799749999603786546755269966997899637667670455556763488
Q ss_pred EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 099995799995458851578873699973899909999817992999975799
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 703 ~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~ 756 (918)
...+|..+. +. .......-...+.|+++|+++.++++-...+.|++|++...
T Consensus 187 ~g~v~~~~~-~~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 187 WSFVTYYSP-ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp CEEEEEECS-SC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CEEEEEECC-CC-EEEECCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 403898769-84-29976788746434888999999999678893999996898
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=89.38 E-value=0.27 Score=19.51 Aligned_cols=165 Identities=15% Similarity=0.081 Sum_probs=71.5
Q ss_pred CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 89939999889982346741379876999998999989998489809999579999545885157887369997389990
Q 002471 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 658 ~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ 737 (918)
.|+.++.|.....-...........+..+..... ..+. -.|+.+..|.......... .......|..++-. ..
T Consensus 81 ~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~-~~~~~~~v~~~~~~---~~ 153 (273)
T d1jtdb_ 81 KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTV-PAEAQSGVTALDGG---VY 153 (273)
T ss_dssp ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSC-CGGGGSSEEEEEEC---SS
T ss_pred EEEEEECCCCCCCEEECCCCCCCCCEEEEEEECC--CCCC-CCCCCCEECCCCCCCCEEE-ECCCCCEEEEEECC---CE
T ss_conf 3201302688730010223334420147863011--1111-1233200001279883434-03577317887503---22
Q ss_pred EEEEEECCCCEEEEECCCCEEEE-EEECCCEEEEEECCCCEEEEEECCCEEEEEECCCC-EEEEEECCCCCCEEEEEECC
Q ss_conf 99998179929999757990457-85268118999129997999974991999978996-08999507998937999929
Q 002471 738 LICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP 815 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdi~~~~~~~-~~~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~I~si~~sp 815 (918)
.+ ....++.++.|......... ..........+.......++. .||.|+.|=.... ..... ......|..|+-..
T Consensus 154 ~~-~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h~~~l-~dG~v~~WG~n~~Gql~~~-~~~~~~v~~I~~G~ 230 (273)
T d1jtdb_ 154 TA-LAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVP-TEALSGVSAIASGE 230 (273)
T ss_dssp EE-EEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCC-GGGGSSCCEEEECS
T ss_pred EE-EEECCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCEEEEEE-ECCCEEECCCCCCCCCCCC-CCCCCCCEEEEECC
T ss_conf 56-452366416752135786553332467741110302036788-5684898379998960787-05789958999590
Q ss_pred CCCEEEEEECCEEEEEECC
Q ss_conf 9999999959939999889
Q 002471 816 SGELLASVSEDSVRVWTVG 834 (918)
Q Consensus 816 dg~~Las~s~d~I~iwdl~ 834 (918)
...++. .++.|..|-..
T Consensus 231 -~~~~~l-~~g~v~~WG~~ 247 (273)
T d1jtdb_ 231 -WYSLAL-KNGKVIAWGSS 247 (273)
T ss_dssp -SCEEEE-ETTEEEEESTT
T ss_pred -CEEEEE-ECCEEEEECCC
T ss_conf -569999-89999997899
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.21 E-value=0.38 Score=18.64 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=14.6
Q ss_pred CCCEEEEEECCC-----EEEEEECCCCCEE
Q ss_conf 999899998499-----1999989999189
Q 002471 860 TYPSLLVIGCYQ-----SLELWNMSENKTM 884 (918)
Q Consensus 860 ~g~~l~s~s~dg-----~I~iwd~~~~~~~ 884 (918)
+++.+++|+.++ .|.+||+.+.+-.
T Consensus 242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 271 (288)
T d1zgka1 242 QGRIYVLGGYDGHTFLDSVECYDPDTDTWS 271 (288)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCCEECCEEEEEECCCCEEE
T ss_conf 999999956799954563999979999898
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.25 E-value=0.33 Score=18.97 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
Q ss_conf 988988778899741589999999963798999
Q 002471 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSD 41 (918)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~ 41 (918)
++=||.=|++||..+++.+++.+|..|..++.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~ 39 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 39 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999999988829999999998778987
|