Citrus Sinensis ID: 002481

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------

MRNRTQPESSSSSSSASKSEPRATDEQIKTSSNDSIHVSSAKRSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF

cccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEccccccccEEEEcccEEEEEEccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHcccccccccEEEEEEccccccccEEEEccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccccccEEEEEEccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEEcccEEEEEEEEEcccccccccccEEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccEEEccccccc

cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcccccccHHHHcccHHHEcccEEEEEEEcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHcccccHHccEEEEEEHHccccccEEEEcccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccEEEEccccccccEEEEEcccEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccHcccHHHHccccccccccEEEEEHHHEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccccHEEHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEccccccccHHHHHcccccEccccccEEEEEEEEEcccccccccccccccccccEEEEEcccccccccccccEEEEEEEcccccEEEEEEcccccccEEEEEEcccccccccEEEEEEccccccccEEEEEEEEEccccccccccccccccccEEEEEcccccccHHHHHHHHHcccccccccccccHHHHHHHHcccccc

mrnrtqpesssssssasksepratdeqiktssndsihvssakrSGLVWTVVFATLICASYGVYyyqyehmpppltaeqagrrGFSELEAMKHVKALtqlgphavgsdALDRALQYVLAASQKIKeskhweadvEVDFfhaksganrvgtgvfkgktLIYSDLNHIVLRILPkyaseagenAILVSShidtvsagegagdcSSCVAVMLELARVMSQWAHEFKNAVIFLFNtgeeeglngahsfvtqhpwsTTIRVAVDLeamgiggrsalfqagpnlwaVENFAavakypsgqiigqdlfasgvfetatdFQVYTEVAglsgldfaytdksavyhtkndrldllkpgslqhLGENMLDFLLQTasstsipkgnaveeegktvheTGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFIlpqissspvpyvaspwltvGLFAAPAFLGALTGQHLGYIVLKAYLANqyskgmqlspVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVppafaygfleatltpvrltrPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVrfdrnpggtpewlGNVIFAVVIAVVSCLTLVYLLSYVhlsgakgpiAFASFILVGLSIIMVssgiippfseetARAVNIVHIVDasgkfggkqepssYIALysatpgkltKEVEQIKEgfvcgrdnVIDFVTSsmkygcltddnseggwsqsdiptihvnsdtvdtegnenerITQVSIDMKGAKRLTLAINAKEIedftfkvprdakssiygwhiiefsggknaaSKFEIALYWAKnstraagnsngkekqqplvklrtdfdrltpktervlsklppwcslfegsissqplsflnslpvnf

mrnrtqpesssssssasksepratdeqiktssndsihvssakrsglVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFfhaksganrvgTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPkgnaveeegktvHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVnsdtvdtegneneritqvsidmkgaKRLTLAINAkeiedftfkvprdAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNstraagnsngkekqqplvklrtdfdrltpktervlsklppWCSLFEgsissqplsflnslpvnf

MRNRTQPEsssssssasksEPRATDEQIKTSSNDSIHVSSAKRSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVglfaapaflgalTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVrltrplklatlllglavpvlVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF

*******************************************SGLVWTVVFATLICASYGVYYYQYEHM******************AMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQT****************KTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDD********************************QVSIDMKGAKRLTLAINAKEIEDFTFKVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAK********************************ERVLSKLPPWCSLFEGS****************

***************************************SAKRSGLVWTVVFATLICASYGVYYYQYE******************LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPK****AGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAV*****TVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVN***************QVSIDMKGAKRLTLAINAKEIEDFTFKVP*****SIYGWHIIEFSGGKNAASKFEIALYWAKNSTR*****NGKEKQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF

******************************************RSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNSTR***********QPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF

***************************************SAKRSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDT**NENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVPRDAKSSIYGWHIIEFSGGKNAASKFEIALYWAKNS************QQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSFLNSLPVNF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		917	2.2.26 [Sep-21-2011]
Q3UVK0		898	Endoplasmic reticulum met	yes	no	0.610	0.623	0.257	8e-53
Q7Z2K6		904	Endoplasmic reticulum met	yes	no	0.607	0.616	0.259	2e-52
Q6UPR8		898	Endoplasmic reticulum met	yes	no	0.610	0.623	0.25	2e-49
Q0VGW4		876	Endoplasmic reticulum met	N/A	no	0.615	0.643	0.247	7e-48
Q09216		895	Uncharacterized protein B	yes	no	0.696	0.713	0.263	1e-47
Q18600		895	Uncharacterized zinc meta	no	no	0.499	0.511	0.263	1e-41
O94702		822	Uncharacterized zinc meta	yes	no	0.387	0.431	0.298	1e-36
Q59RF7		837	Probable zinc metalloprot	N/A	no	0.256	0.280	0.326	3e-27
C4YS59		837	Probable zinc metalloprot	N/A	no	0.256	0.280	0.326	3e-27
Q6CDE6		989	Probable zinc metalloprot	yes	no	0.279	0.258	0.327	5e-27

>sp\|Q3UVK0\|ERMP1_MOUSE Endoplasmic reticulum metallopeptidase 1 OS=Mus musculus GN=Ermp1 PE=1 SV=2	Back alignment and function desciption

 Score =  209 bits (532), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 162/628 (25%), Positives = 287/628 (45%), Gaps = 68/628 (10%)

Query: 76  AEQAGRRG-FSELEAMKHVKALTQLGPHAVGSDALD-RALQYVLAASQKIKESKHWEADV 133
           +  +G +G F   +A  +++ +T +GP   GS   +   +QY+L   + I+   +    +
Sbjct: 92  SRTSGLQGEFDARQARDYLEHITAIGPRTTGSTENEILTVQYLLEQIKLIEAQSNSLHSI 151

Query: 134 EVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA 193
            VD    +            G T  Y ++ ++V+++ P+   +  E+AIL + H D+V+ 
Sbjct: 152 SVDI---QRPTGSFSIDFLGGFTSYYDNITNVVVKLEPR---DGAESAILANCHFDSVAN 205

Query: 194 GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTI 253
             GA D +   AVMLE+ RVMS      ++AV+FLFN  EE  L  +H F+TQHPW++ I
Sbjct: 206 SPGASDDAVSCAVMLEVLRVMSASPEPMQHAVVFLFNGAEENVLQASHGFITQHPWASLI 265

Query: 254 RVAVDLEAMGIGGRSALFQAGP-NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQ 312
           R  ++LEA G+GG+  +FQ GP N W V+ + + AK+P   ++ Q++F SG+  + TDF+
Sbjct: 266 RAFINLEAAGVGGKELVFQTGPENPWLVQAYVSAAKHPFASVVAQEVFQSGIIPSDTDFR 325

Query: 313 VYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKG 372
           +Y +   + G+D A+ +   +YHTK D  D +   S+Q  G+N+L  L   A+S ++   
Sbjct: 326 IYRDFGNIPGIDLAFIENGYIYHTKYDTADRILIDSIQRAGDNILAVLKHLATSDTLASS 385

Query: 373 NAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAA- 431
           +         H + V+FD+LG  ++ Y     ++++  V++  +L     L+   +  A 
Sbjct: 386 SEYR------HGSMVFFDVLGLLVIAYPSRVGSIINYMVVMAVVLYLGKKLLRPKHRNAN 439

Query: 432 ------VSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAF 485
                   L +T +S    LV  +  +V I+ I   +S     Y+A         A   F
Sbjct: 440 YMRDFLCGLGITFISWFTSLVTVLIIAVFISLIGQSLSWYNYFYIAVCLYGTATVAKIIF 499

Query: 486 LGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALG 545
           +  L  +         YL                       E +   S F+    L+AL 
Sbjct: 500 IHTLAKRFYYMNASDLYL----------------------GELFFDTSLFVHCAFLVAL- 536

Query: 546 NYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLK--------LATLLLGLAVPVL 597
            Y    S +M+ VW+V P          LT + + +  K        +A  LLG+ +P L
Sbjct: 537 TYQGFCSAFMSAVWVVFP---------LLTKLCVYKDFKKHGAQGRFVALYLLGMFIPYL 587

Query: 598 VSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGA 657
                I  +  +    L R         E   +V+ A ++AV   +   Y +++++L  +
Sbjct: 588 YGLYLIWAVFEMFTPILGR------SGSEIPPDVVLASILAVCVMILSSYFITFIYLVNS 641

Query: 658 KGPIAFASFILVGLSIIMVSSGIIPPFS 685
                    ++  ++ ++V SG   P+S
Sbjct: 642 TKKTILTLILVCAVTFLLVCSGAFFPYS 669

Within the ovary, required for the organization of somatic cells and oocytes into discrete follicular structures.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -

>sp\|Q7Z2K6\|ERMP1_HUMAN Endoplasmic reticulum metallopeptidase 1 OS=Homo sapiens GN=ERMP1 PE=1 SV=2	Back alignment and function description

>sp\|Q6UPR8\|ERMP1_RAT Endoplasmic reticulum metallopeptidase 1 OS=Rattus norvegicus GN=Ermp1 PE=1 SV=1	Back alignment and function description

>sp\|Q0VGW4\|ERMP1_XENLA Endoplasmic reticulum metallopeptidase 1 OS=Xenopus laevis GN=ermp1 PE=2 SV=1	Back alignment and function description

>sp\|Q09216\|YP67_CAEEL Uncharacterized protein B0495.7 OS=Caenorhabditis elegans GN=B0495.7 PE=1 SV=2	Back alignment and function description

>sp\|Q18600\|YTV2_CAEEL Uncharacterized zinc metalloprotease C44B7.11 OS=Caenorhabditis elegans GN=C44B7.11 PE=1 SV=4	Back alignment and function description

>sp\|O94702\|YC52_SCHPO Uncharacterized zinc metalloprotease C1259.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1259.02c PE=3 SV=1	Back alignment and function description

>sp\|Q59RF7\|M28P1_CANAL Probable zinc metalloprotease CaO19.2163/9709 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CaO19.2163 PE=3 SV=1	Back alignment and function description

>sp\|C4YS59\|M28P1_CANAW Probable zinc metalloprotease CAWG_04918 OS=Candida albicans (strain WO-1) GN=CAWG_04918 PE=3 SV=1	Back alignment and function description

>sp\|Q6CDE6\|M28P1_YARLI Probable zinc metalloprotease YALI0C01133g OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0C01133g PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		917
255584015		921	ATP binding protein, putative [Ricinus c	0.991	0.986	0.653	0.0
225449044		900	PREDICTED: endoplasmic reticulum metallo	0.969	0.987	0.669	0.0
449449477		908	PREDICTED: endoplasmic reticulum metallo	0.978	0.987	0.623	0.0
356533971		912	PREDICTED: endoplasmic reticulum metallo	0.946	0.951	0.645	0.0
357443249		917	Endoplasmic reticulum metallopeptidase [	0.980	0.980	0.609	0.0
297808135		911	hypothetical protein ARALYDRAFT_910108 [	0.970	0.976	0.583	0.0
15242031		910	vacuolar protein / peptidase dimerizatio	0.969	0.976	0.582	0.0
326494824		907	predicted protein [Hordeum vulgare subsp	0.970	0.981	0.556	0.0
357164731		909	PREDICTED: endoplasmic reticulum metallo	0.968	0.976	0.548	0.0
413953477		908	hypothetical protein ZEAMMB73_851599 [Ze	0.973	0.983	0.549	0.0

>gi\|255584015\|ref\|XP_002532753.1\| ATP binding protein, putative [Ricinus communis] gi\|223527504\|gb\|EEF29630.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1259 bits (3258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/929 (65%), Positives = 736/929 (79%), Gaps = 20/929 (2%)

Query: 1   MRNRTQPESSSSSSSASKSEPRATDEQIKTSSNDSIHV--SSAKRSGLVWTVVFATLICA 58
           MR R    SSSS S  S S+    +E I   SN+ + +  S+ +RSG VW ++F   I +
Sbjct: 1   MRKRVDTSSSSSESKPSTSQEAINEESI---SNNVVLINGSTIRRSGFVWLIIFGLTIYS 57

Query: 59  SYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLA 118
           S+ VY YQ++++P PLT EQAG+RGFSE+ AMKH++ALTQLGPH VGSD+LD ALQYVL 
Sbjct: 58  SWAVYTYQFQNLPVPLTPEQAGKRGFSEVAAMKHIRALTQLGPHPVGSDSLDLALQYVLE 117

Query: 119 ASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAG 178
           A++ IK++ HWE DV+VD FH KSG+NR+ +G+FKGKTL+YSDLNHI+LRILPKYASEAG
Sbjct: 118 AAENIKKTAHWEVDVQVDLFHTKSGSNRLASGLFKGKTLVYSDLNHILLRILPKYASEAG 177

Query: 179 ENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLN 238
           ENAIL+SSHIDTV + EGAGDCSSCVAVMLELAR +SQWAH FKN +IFLFNTGEEEGLN
Sbjct: 178 ENAILISSHIDTVFSTEGAGDCSSCVAVMLELARGISQWAHGFKNGIIFLFNTGEEEGLN 237

Query: 239 GAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQD 298
           GAHSF+TQHPWSTTIR+AVDLEAMGIGG+S +FQAGP+ W +EN+A  AKYPSG ++ QD
Sbjct: 238 GAHSFITQHPWSTTIRMAVDLEAMGIGGKSGIFQAGPDPWVIENYATAAKYPSGNVLAQD 297

Query: 299 LFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLD 358
           LFASGV ++ATDFQVY EVAGLSGLDFAYTD S VYHTKND+L+LLKPGSLQHLGENML 
Sbjct: 298 LFASGVIKSATDFQVYKEVAGLSGLDFAYTDNSGVYHTKNDKLELLKPGSLQHLGENMLA 357

Query: 359 FLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLI 418
           FLLQ   ++ +PK     EEGK+  +T V+FDILG YM++Y+Q FA+ML NSVI+QSLLI
Sbjct: 358 FLLQIGPASHLPKDKRTVEEGKSSRDTAVFFDILGTYMIVYNQRFASMLQNSVIMQSLLI 417

Query: 419 WTASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVG 478
           W ASL+MGGY AA+SL L+CLSAIL LV SISFSV +AFILPQ+SSSPVPYVA+PWL VG
Sbjct: 418 WAASLLMGGYSAAISLGLSCLSAILTLVFSISFSVFVAFILPQVSSSPVPYVANPWLVVG 477

Query: 479 LFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQW 538
           LF APA +GA+TGQH GY +L+ YL++ YSK  QLS V QA +VKLE ERWLFKSGFLQW
Sbjct: 478 LFGAPALIGAMTGQHFGYFILRMYLSSVYSKRKQLSSVIQADVVKLETERWLFKSGFLQW 537

Query: 539 LILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLV 598
           L+LL LGNYY+I S+YMAL WLVPPAFAYG LEATLTP RL RPLKLATLL+GLAVP+++
Sbjct: 538 LVLLILGNYYRIVSSYMALFWLVPPAFAYGLLEATLTPARLPRPLKLATLLMGLAVPIVI 597

Query: 599 SAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAK 658
           SAG  IRLA  L+  +VRFDRNPGGTPEWLGNVI +V +AVV C TL Y++SYVHLS AK
Sbjct: 598 SAGTFIRLAGTLIGIVVRFDRNPGGTPEWLGNVIISVFVAVVICFTLSYIISYVHLSDAK 657

Query: 659 GPIAFASFILVGLSIIMVSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYS 718
             I  A+ +L GLS I + SGI+PPF+ + ARAVN+VH+VD +G +G KQ+PSSY++L+S
Sbjct: 658 RSIILATSVLFGLSFIFILSGILPPFTGDAARAVNVVHVVDTTGSYGNKQDPSSYVSLFS 717

Query: 719 ATPGKLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLT--DDNSEGGWSQSDIPTIHVNS 776
           ATPGKLTKE E+I EG  CGRD V+DFVT S++YGC T  D  ++GGW  +D+PT+ VNS
Sbjct: 718 ATPGKLTKEAEEIDEGLSCGRDKVVDFVTFSVEYGCWTYEDPKTKGGWGDADVPTLQVNS 777

Query: 777 DTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFK------VPRDAKSSIYGWH 830
           DT      E++R+T VSID K + R +LAIN  EIEDF         VP   KSSI GWH
Sbjct: 778 DT-----KEDKRMTLVSIDTKASMRWSLAINTDEIEDFILTGNSEELVPSGNKSSIDGWH 832

Query: 831 IIEFSGGKNAASKFEIALYWAKNSTRAAGNSNGK--EKQQPLVKLRTDFDRLTPKTERVL 888
           II+FSGGK A   FE+ L WAK   +   + +G+  + ++PL+KLRTD DR+TPK E +L
Sbjct: 833 IIQFSGGKEAPRNFELTLLWAKKGKKFTHSVDGQTMKDKRPLLKLRTDVDRITPKAESIL 892

Query: 889 SKLPPWCSLFEGSISSQPLSFLNSLPVNF 917
            KLP WCS F  S S   L+FL+S+PV+F
Sbjct: 893 KKLPQWCSQFGKSTSPYNLAFLSSVPVDF 921

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225449044\|ref\|XP_002274159.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera] gi\|296086015\|emb\|CBI31456.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449449477\|ref\|XP_004142491.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356533971\|ref\|XP_003535531.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357443249\|ref\|XP_003591902.1\| Endoplasmic reticulum metallopeptidase [Medicago truncatula] gi\|355480950\|gb\|AES62153.1\| Endoplasmic reticulum metallopeptidase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297808135\|ref\|XP_002871951.1\| hypothetical protein ARALYDRAFT_910108 [Arabidopsis lyrata subsp. lyrata] gi\|297317788\|gb\|EFH48210.1\| hypothetical protein ARALYDRAFT_910108 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15242031\|ref\|NP_197566.1\| vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsis thaliana] gi\|110741500\|dbj\|BAE98701.1\| 24 kDa vacuolar protein - like [Arabidopsis thaliana] gi\|332005489\|gb\|AED92872.1\| vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|326494824\|dbj\|BAJ94531.1\| predicted protein [Hordeum vulgare subsp. vulgare] gi\|326513062\|dbj\|BAK03438.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|357164731\|ref\|XP_003580148.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|413953477\|gb\|AFW86126.1\| hypothetical protein ZEAMMB73_851599 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		917
TAIR\|locus:2180494		910	AT5G20660 [Arabidopsis thalian	0.959	0.967	0.564	1.5e-271
FB\|FBgn0034436		891	CG11961 [Drosophila melanogast	0.407	0.419	0.341	9.3e-49
UNIPROTKB\|E7ER77		841	ERMP1 "Endoplasmic reticulum m	0.406	0.443	0.301	1.3e-48
MGI\|MGI:106250		898	Ermp1 "endoplasmic reticulum m	0.415	0.424	0.305	1.5e-48
UNIPROTKB\|Q7Z2K6		904	ERMP1 "Endoplasmic reticulum m	0.406	0.412	0.301	2.7e-48
UNIPROTKB\|F1MI95		892	ERMP1 "Uncharacterized protein	0.412	0.423	0.292	2e-47
UNIPROTKB\|F1PSG1		896	ERMP1 "Uncharacterized protein	0.402	0.411	0.295	1.5e-46
UNIPROTKB\|F1SMM0		905	ERMP1 "Uncharacterized protein	0.406	0.412	0.291	3.8e-46
RGD\|727831		898	Ermp1 "endoplasmic reticulum m	0.415	0.424	0.295	4.4e-46
FB\|FBgn0034439		862	CG10062 [Drosophila melanogast	0.440	0.468	0.303	3.8e-45

TAIR\|locus:2180494 AT5G20660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2611 (924.2 bits), Expect = 1.5e-271, P = 1.5e-271
 Identities = 514/910 (56%), Positives = 662/910 (72%)

Query:    20 EPRATDEQIKTSSN-DSIHV---SSAKRSGLVWTVVFATLICASYGVYYYQYEHMPPPLT 75
             EP ++ ++   SS+ D++     +  KRSG VW  V   +  +S+ VY YQ  ++P PLT
Sbjct:    13 EPSSSSKETDASSDKDALDKEVQADVKRSGKVWLSVLILITYSSWFVYNYQLGNLPKPLT 72

Query:    76 AEQAGRRGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEV 135
             A+QAG+RGFSE+EA+KHVKALTQ GPH V SDAL  AL+YVLA  +K+KE+ HWE DV V
Sbjct:    73 AKQAGKRGFSEIEAIKHVKALTQFGPHPVSSDALVHALEYVLAEVEKVKETAHWEVDVNV 132

Query:   136 DFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGE 195
             DFF +K G NR+  G+FKGK+L+YSD++HIVLRILPKY S+AG+NAILVSSHIDTV    
Sbjct:   133 DFFESKFGVNRLVGGLFKGKSLVYSDISHIVLRILPKYESDAGDNAILVSSHIDTVFTTG 192

Query:   196 GAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRV 255
             GAGDCSSCVAVMLELAR  SQ AH FKN++IFLFNTGEEEGLNGAHSF+TQHPWS+T+R+
Sbjct:   193 GAGDCSSCVAVMLELARSASQSAHGFKNSIIFLFNTGEEEGLNGAHSFITQHPWSSTVRL 252

Query:   256 AVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYT 315
             A+DLEAMG GG+S++FQAGP+ WA+ENFA  AKYPSGQIIGQDLF SG+ ++ATDFQVY 
Sbjct:   253 AIDLEAMGTGGKSSIFQAGPSPWAIENFALAAKYPSGQIIGQDLFTSGIIKSATDFQVYK 312

Query:   316 EVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAV 375
             EVAGLSGLDFA+ D +AVYHTKND+++L+KPGSLQHLGENML FLL+ ASS+ +PK   +
Sbjct:   313 EVAGLSGLDFAFADNTAVYHTKNDKIELIKPGSLQHLGENMLAFLLRVASSSDLPKDKTL 372

Query:   376 EEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLA 435
             + E ++  ++ VYFD+LGKYM++Y Q  A ML+ SVI+QS+LIW  S+ MGGYPA VSL 
Sbjct:   373 QGEERSNPDSAVYFDVLGKYMIVYRQSLATMLYVSVIMQSILIWVLSVFMGGYPAVVSLI 432

Query:   436 LTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVXXXXXXXXXXXXTGQHLG 495
             L+CLS IL  + S++FSV +AFILP ISSSPVP+ ++PW+ V            +GQH+ 
Sbjct:   433 LSCLSIILSWIFSVAFSVAVAFILPWISSSPVPFASNPWMVVGLFVSPAILGSISGQHVA 492

Query:   496 YIVLKAYLANQYSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYM 555
             +I L+   +N+ S  MQ+SP  +  L +LEAERWLFKSGF+QWL+LLALG YYK+GSTY+
Sbjct:   493 FIFLRKKSSNRNSNKMQVSPRLRDNLARLEAERWLFKSGFIQWLVLLALGTYYKLGSTYL 552

Query:   556 ALVWLVPPAFAYGFLEATLTPVXXXXXXXXXXXXXXXXXXXXVSAGNIIRLANVLVATLV 615
             ALVWLVPPAFAYG LEATL+P+                    VS+G+ I+L   ++  L+
Sbjct:   553 ALVWLVPPAFAYGLLEATLSPIRLPKPLKLATLLISLAVPILVSSGSFIQLTGTMIGMLI 612

Query:   616 RFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIM 675
             RFD NPG TPEWLG+ + AV IA    L++VYLL+Y+HLSGAK  I  A  I+  LS+ +
Sbjct:   613 RFDSNPGVTPEWLGSALIAVAIATFISLSMVYLLAYIHLSGAKKSIVTALCIITALSLAL 672

Query:   676 VSSGIIPPFSEETARAVNIVHIVDASGKFGGKQEPSSYIALYSATPGKLTKEVEQIKEGF 735
             VSSG++P F+E+TARAVN+VH+VD SG     Q+  ++I+L+S TPG L  E EQIKEGF
Sbjct:   673 VSSGVLPAFTEDTARAVNVVHVVDTSG-----QDQVAFISLFSNTPGNLNMEAEQIKEGF 727

Query:   736 VCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIHVNSDTVDTEGNENERITQVSID 795
              CGR+N IDFV+   KY C+T  ++E GW + DIP + V +D  + EG    R+  VS+D
Sbjct:   728 RCGRENKIDFVSFEAKYNCVTKKDAEVGWDKHDIPVLRVINDK-EREGG---RVIAVSMD 783

Query:   796 MKGAKRLTLAINAKEIEDFTFKV----------PRDAKSSIY-GWHIIEFSGGKNAASKF 844
               G+ R TL I+  EIEDFT +V           R  KSS   GWH I+F+GGK A + F
Sbjct:   784 TGGSSRWTLRIDMDEIEDFTMQVGEEEEEELMIERGEKSSNEEGWHQIQFAGGKKAPTSF 843

Query:   845 EIALYWAKNSTRAAGNSNGKEKQQPLVKLRTDFDRLTPKTERVLSKLPPWCSLFEGSISS 904
              + LY  +        S+ K+KQ+PL+KLRTD +R TP+ +RVL +LPP+C++F  S S 
Sbjct:   844 VLKLYKEEEV------SDDKKKQRPLLKLRTDLNRRTPQVQRVLERLPPFCTMFGKSTSP 897

Query:   905 QPLSFLNSLP 914
               L+FL SLP
Sbjct:   898 FTLAFLASLP 907

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

FB\|FBgn0034436 CG11961 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|E7ER77 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:106250 Ermp1 "endoplasmic reticulum metallopeptidase 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7Z2K6 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MI95 ERMP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PSG1 ERMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SMM0 ERMP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|727831 Ermp1 "endoplasmic reticulum metallopeptidase 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

FB\|FBgn0034439 CG10062 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		917
cd03875		307	cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasm	1e-119
pfam04389		173	pfam04389, Peptidase_M28, Peptidase family M28	1e-47
cd02690		252	cd02690, M28, M28 Zn-peptidases include aminopepti	2e-19
COG2234		435	COG2234, Iap, Predicted aminopeptidases [General f	3e-11
cd05642		348	cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas	2e-09
cd03877		254	cd03877, M28_like_PA, M28 Zn-Peptidases containing	3e-09
cd08015		275	cd08015, M28_like_4, M28 Zn-Peptidases	6e-09
cd08656		281	cd08656, M28_like_6, M28 Zn-Peptidases	2e-08
cd05662		267	cd05662, M28_like_2, M28 Zn-Peptidases	1e-07
cd05661		305	cd05661, M28_like_PA_2, M28 Zn-Peptidases containi	3e-07
cd03876		288	cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomy	4e-07
cd05640		279	cd05640, M28_like_1, M28 Zn-Peptidases	2e-06
cd05660		306	cd05660, M28_like_PA_1, M28 Zn-Peptidases containi	2e-05
cd05663		260	cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptid	2e-05
cd08022		286	cd08022, M28_PSMA_like, M28 Zn-peptidase prostate-	6e-05
cd03896		359	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspar	9e-05
cd03883		276	cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma gl	3e-04
cd08659		365	cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo	0.001
cd05683		366	cd05683, M20_peptT_like, M20 Peptidase T like enzy	0.002

>gnl\|CDD\|193497 cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1	Back alignment and domain information

 Score =  364 bits (936), Expect = e-119
 Identities = 128/321 (39%), Positives = 179/321 (55%), Gaps = 16/321 (4%)

Query: 81  RRGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKE--SKHWEADVEVDFF 138
              FSE  A  H++AL  +GPH  GS   D+   Y+L   ++I    S   E +V+ D+ 
Sbjct: 1   PEQFSEERAWSHLRALASIGPHPYGSANEDKVRDYLLERLEEIGGRASNSLEVEVQDDYG 60

Query: 139 HAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAG 198
              S        +  G T +Y +  +IV+RI  K      E A+L+++H D+V    GA 
Sbjct: 61  SGSSD------FLGGGMTSVYFEGTNIVVRISGKNN--GSEGALLLNAHYDSVPTSPGAS 112

Query: 199 DCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVD 258
           D  S VAVMLE+ R +++     K  VIFLFN  EE GL GAH F+TQHPW+  +R  ++
Sbjct: 113 DDGSGVAVMLEVLRALAKSGEPPKRDVIFLFNGAEENGLLGAHGFITQHPWAKNVRAFIN 172

Query: 259 LEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVA 318
           LEA G GGR+ LFQ GP  W VE +   A +P   ++ QD+F SG+  + TDF+V+ E  
Sbjct: 173 LEAAGAGGRAILFQTGPGPWLVEAYYKAAPHPFATVLAQDVFQSGLIPSDTDFRVFREYG 232

Query: 319 GLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASSTSIPKGNAVEEE 378
           GL GLD A+ +   VYHTK D  D + PGSLQH+GEN+L  L   A+S  +        +
Sbjct: 233 GLPGLDIAFIENGYVYHTKYDTADHISPGSLQHMGENLLALLRYLANSDELEN------D 286

Query: 379 GKTVHETGVYFDILGKYMVLY 399
            +      VYFD+LG + V+Y
Sbjct: 287 SEYRGGDAVYFDLLGLFFVVY 307

Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this cluster is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown. Length = 307

>gnl\|CDD\|218057 pfam04389, Peptidase_M28, Peptidase family M28	Back alignment and domain information

>gnl\|CDD\|193493 cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases	Back alignment and domain information

>gnl\|CDD\|225143 COG2234, Iap, Predicted aminopeptidases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|193520 cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase (AAP)-like	Back alignment and domain information

>gnl\|CDD\|193499 cd03877, M28_like_PA, M28 Zn-Peptidases containing a PA domain insert	Back alignment and domain information

>gnl\|CDD\|193563 cd08015, M28_like_4, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193569 cd08656, M28_like_6, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193538 cd05662, M28_like_2, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193537 cd05661, M28_like_PA_2, M28 Zn-Peptidases containing a PA domain insert	Back alignment and domain information

>gnl\|CDD\|193498 cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomyces griseus Aminopeptidase and similar proteins	Back alignment and domain information

>gnl\|CDD\|193519 cd05640, M28_like_1, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193536 cd05660, M28_like_PA_1, M28 Zn-Peptidases containing a PA domain insert	Back alignment and domain information

>gnl\|CDD\|193539 cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptidases containing a PA domain insert and associated with a PDZ domain	Back alignment and domain information

>gnl\|CDD\|193568 cd08022, M28_PSMA_like, M28 Zn-peptidase prostate-specific membrane antigen	Back alignment and domain information

>gnl\|CDD\|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	Back alignment and domain information

>gnl\|CDD\|193504 cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase	Back alignment and domain information

>gnl\|CDD\|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	Back alignment and domain information

>gnl\|CDD\|193558 cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		917
KOG2194		834	consensus Aminopeptidases of the M20 family [Postt	100.0
PRK10199		346	alkaline phosphatase isozyme conversion aminopepti	99.95
PF04389		179	Peptidase_M28: Peptidase family M28; InterPro: IPR	99.95
KOG2195		702	consensus Transferrin receptor and related protein	99.87
KOG3946		338	consensus Glutaminyl cyclase [Posttranslational mo	99.8
COG2234		435	Iap Predicted aminopeptidases [General function pr	99.67
TIGR03176		406	AllC allantoate amidohydrolase. This enzyme cataly	99.5
PRK12890		414	allantoate amidohydrolase; Reviewed	99.41
PRK12891		414	allantoate amidohydrolase; Reviewed	99.4
PRK13590		591	putative bifunctional OHCU decarboxylase/allantoat	99.38
PRK09133		472	hypothetical protein; Provisional	99.38
PRK13799		591	unknown domain/N-carbamoyl-L-amino acid hydrolase	99.37
TIGR01879		401	hydantase amidase, hydantoinase/carbamoylase famil	99.37
PRK09290		413	allantoate amidohydrolase; Reviewed	99.36
PRK08262		486	hypothetical protein; Provisional	99.35
PRK12893		412	allantoate amidohydrolase; Reviewed	99.31
PRK06133		410	glutamate carboxypeptidase; Reviewed	99.31
PRK12892		412	allantoate amidohydrolase; Reviewed	99.31
PRK08596		421	acetylornithine deacetylase; Validated	99.3
PRK07473		376	carboxypeptidase; Provisional	99.27
TIGR01910		375	DapE-ArgE acetylornithine deacetylase or succinyl-	99.26
PRK08588		377	succinyl-diaminopimelate desuccinylase; Reviewed	99.24
PRK07906		426	hypothetical protein; Provisional	99.21
PRK07907		449	hypothetical protein; Provisional	99.2
PRK07338		402	hypothetical protein; Provisional	99.19
PRK13983		400	diaminopimelate aminotransferase; Provisional	99.17
TIGR01893		477	aa-his-dipept aminoacyl-histidine dipeptidase.	99.17
PRK09104		464	hypothetical protein; Validated	99.17
TIGR01880		400	Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	99.17
PRK06446		436	hypothetical protein; Provisional	99.16
PRK13013		427	succinyl-diaminopimelate desuccinylase; Reviewed	99.16
PRK08201		456	hypothetical protein; Provisional	99.15
PRK04443		348	acetyl-lysine deacetylase; Provisional	99.15
COG1363		355	FrvX Cellulase M and related proteins [Carbohydrat	99.13
PF05450		234	Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri	99.12
PRK05469		408	peptidase T; Provisional	99.12
TIGR01883		361	PepT-like peptidase T-like protein. This model rep	99.11
PRK13381		404	peptidase T; Provisional	99.1
PRK06837		427	acetylornithine deacetylase; Provisional	99.09
PRK06915		422	acetylornithine deacetylase; Validated	99.09
PRK13007		352	succinyl-diaminopimelate desuccinylase; Reviewed	99.09
PRK15026		485	aminoacyl-histidine dipeptidase; Provisional	99.09
PRK07079		469	hypothetical protein; Provisional	99.08
KOG2275		420	consensus Aminoacylase ACY1 and related metalloexo	99.08
PRK00466		346	acetyl-lysine deacetylase; Validated	99.07
PRK07522		385	acetylornithine deacetylase; Provisional	99.06
TIGR01892		364	AcOrn-deacetyl acetylornithine deacetylase (ArgE).	99.05
PRK07318		466	dipeptidase PepV; Reviewed	99.05
PRK08652		347	acetylornithine deacetylase; Provisional	99.05
TIGR01882		410	peptidase-T peptidase T. This model represents a t	99.05
PF09940		386	DUF2172: Domain of unknown function (DUF2172); Int	99.04
COG4882		486	Predicted aminopeptidase, Iap family [General func	99.03
PRK07205		444	hypothetical protein; Provisional	99.03
PRK06156		520	hypothetical protein; Provisional	99.01
PRK13009		375	succinyl-diaminopimelate desuccinylase; Reviewed	98.98
PRK05111		383	acetylornithine deacetylase; Provisional	98.98
PF01546		189	Peptidase_M20: Peptidase family M20/M25/M40 This f	98.98
PRK08651		394	succinyl-diaminopimelate desuccinylase; Reviewed	98.97
TIGR03106		343	trio_M42_hydro hydrolase, peptidase M42 family. Th	98.97
KOG2526		555	consensus Predicted aminopeptidases - M20/M25/M40	98.95
COG0624		409	ArgE Acetylornithine deacetylase/Succinyl-diaminop	98.94
TIGR03107		350	glu_aminopep glutamyl aminopeptidase. This model r	98.94
TIGR01886		466	dipeptidase dipeptidase PepV. This model represent	98.94
PRK08554		438	peptidase; Reviewed	98.93
PRK13004		399	peptidase; Reviewed	98.92
TIGR01902		336	dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d	98.9
TIGR01900		373	dapE-gram_pos succinyl-diaminopimelate desuccinyla	98.89
TIGR01246		370	dapE_proteo succinyl-diaminopimelate desuccinylase	98.88
PRK09961		344	exoaminopeptidase; Provisional	98.88
TIGR01891		363	amidohydrolases amidohydrolase. This model represe	98.83
PRK09864		356	putative peptidase; Provisional	98.83
TIGR01887		447	dipeptidaselike dipeptidase, putative. This model	98.81
TIGR03320		395	ygeY M20/DapE family protein YgeY. Members of this	98.73
TIGR03526		395	selenium_YgeY putative selenium metabolism hydrola	98.71
PRK08737		364	acetylornithine deacetylase; Provisional	98.68
COG4187		553	RocB Arginine degradation protein (predicted deacy	98.58
PLN02693		437	IAA-amino acid hydrolase	98.51
PLN02280		478	IAA-amino acid hydrolase	98.5
COG4310		435	Uncharacterized protein conserved in bacteria with	98.25
PF05343		292	Peptidase_M42: M42 glutamyl aminopeptidase; InterP	97.99
KOG2276		473	consensus Metalloexopeptidases [Amino acid transpo	97.95
KOG2657		596	consensus Transmembrane glycoprotein nicastrin [Si	97.22
COG2195		414	PepD Di- and tripeptidases [Amino acid transport a	96.48
PF04114		504	Gaa1: Gaa1-like, GPI transamidase component ; Inte	96.09
COG1473		392	AbgB Metal-dependent amidase/aminoacylase/carboxyp	95.83
PRK02813		428	putative aminopeptidase 2; Provisional	90.18
PTZ00371		465	aspartyl aminopeptidase; Provisional	87.61

>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.8e-134  Score=1182.12  Aligned_cols=792  Identities=31%  Similarity=0.526  Sum_probs=674.2

Q ss_pred             CCCcCcchhhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccccC--CCCCCHHHHHHHHHHHHcCCCCCCCCHHHH
Q 002481           33 NDSIHVSSAKRSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAG--RRGFSELEAMKHVKALTQLGPHAVGSDALD  110 (917)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~v~~~~~~~lP~~~~~~~~~--~~~fs~erA~~~L~~L~~igpr~~GS~~n~  110 (917)
                      .|+..+.+++|..+.++..+..++...  +..+.++++|.|++..++.  +++|+++||++++++++++|||++||++|+
T Consensus         3 ~~~~~~~~~~r~~~~~~~~~~f~~~~~--~~~~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls~~G~~~~gS~~ne   80 (834)
T KOG2194|consen    3 LDKSFRRKRKRNGAPCLAHLIFLLSIA--IVLYLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLSAAGPHPVGSDNNE   80 (834)
T ss_pred             chhHhhhhhhhccchHHHHHHHHHHHH--HHHHHHhhccccCCCcchhcCchhhHHHHHHHHHHHHHhcCCcccCchhhH
Confidence            344555566776666655555444433  3445667777776655444  689999999999999999999999999997


Q ss_pred             -HHHHHHHHHHHhcccccCCc-ceEEEEEEeccCCCcccccccc--cCccccccccceEEEEEcCCCCCCCCCCEEEEEe
Q 002481          111 -RALQYVLAASQKIKESKHWE-ADVEVDFFHAKSGANRVGTGVF--KGKTLIYSDLNHIVLRILPKYASEAGENAILVSS  186 (917)
Q Consensus       111 -~a~~yL~~~l~~ig~~~~~~-~~vevd~f~~~~g~~~~~g~~~--~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~A  186 (917)
                       .+++|+++|++++++++..+ +++|+|.+..+        +.|  ++++++|++++||++|+.+|.  ..++.++|++|
T Consensus        81 ~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~s--------g~~~~~~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlna  150 (834)
T KOG2194|consen   81 MHASSFILKEVNKIRKGSQSDLYDMEVDLQSAS--------GSFILEGMTLVYQNISNIVVKISPKN--GNDKNALLLNA  150 (834)
T ss_pred             HHHHHHHHHHHHHHHhhhhcchhhheeceeecc--------ceeeehhhhheeeeeeeEEEecCCCC--CCccceeeeec
Confidence             99999999999999876553 56777765421        223  678999999999999999973  34456999999


Q ss_pred             eccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCcCCC
Q 002481          187 HIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGG  266 (917)
Q Consensus       187 H~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~gG  266 (917)
                      |+||||++|||+||++|||+|||++|++.+.....+|+|+|+||++||.+++|||+|++||||+++++++||||++|+||
T Consensus       151 HfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGG  230 (834)
T KOG2194|consen  151 HFDSVPTGPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGG  230 (834)
T ss_pred             cccccCCCCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCccc
Confidence            99999999999999999999999999999987778999999999999999999999999999999999999999999999


Q ss_pred             CceeeecCCChHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHhhhcCCCeEEEEeecCCCCCCCCcCCCcCCCCH
Q 002481          267 RSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKP  346 (917)
Q Consensus       267 ~~~lfq~g~~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~  346 (917)
                      ++++||+||++|+++.|.++++||+++++++|+||+|+|||||||++|++|+|+||+|+|+..|++.|||++|.++++.+
T Consensus       231 reiLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~  310 (834)
T KOG2194|consen  231 REILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPP  310 (834)
T ss_pred             ceeEEecCCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCc
Confidence            99999999966999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCCCCeEEecccCceEEEeechhHHHHHHHHHHHHHHHHHHHhhcc
Q 002481          347 GSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMG  426 (917)
Q Consensus       347 ~sLq~~g~~vl~lv~~la~~~~l~~~~~~~~~~~~~~~~~VyFD~lG~~~v~y~~~~~~~l~~~v~~~~l~~~~~~~~~~  426 (917)
                      +++||+|+|++++++.++|+ ++.+      .++++++ +||||++|++|+.|+++++++||++++.   .++ +...++
T Consensus       311 gs~q~tGen~L~~v~~lan~-el~~------~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~~---~i~-l~~~~~  378 (834)
T KOG2194|consen  311 GSLQHTGENILALVRSLANS-ELDN------STERSKG-TVYFDVVGKYFLAYSESTGVILNITICI---SIW-LMSLRS  378 (834)
T ss_pred             chhhhhhhHHHHHHHHHhch-hhcc------ccccCCC-ceehhhhhhhhheeehhhhhhhhhhhhh---hhh-hhhhcc
Confidence            99999999999999999998 5542      3456677 9999999999999999999999933332   222 333444


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcceecchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002481          427 GYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQ  506 (917)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~~~sw~s~~~l~~gLy~~p~~~g~~~~~~~~~~~~~~~~~~~  506 (917)
                      +...++++.++++.+++++++++++++++|++++.++ .+|+||++||+++|||.||+++|+.+++.++....++     
T Consensus       379 g~~~~~~f~~~~~~~i~s~~~~~~l~~~~a~~l~~v~-l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~~~~-----  452 (834)
T KOG2194|consen  379 GSSQLGKFILACLLQILSIVVAIGLPVLVALFLDWVG-LPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKRSKR-----  452 (834)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhHHHHHHHhhccc-ccceeecchHHHHHHHHhHHHHHhhHHHHHHHhhccc-----
Confidence            4335889999999999999999999999999999884 6999999999999999999999999999874321111     


Q ss_pred             ccCCCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhcccccCCCchHHH
Q 002481          507 YSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLA  586 (917)
Q Consensus       507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~t~~~i~S~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (917)
                        ++          +...+.+++++|+   +|++|++++|++||||+|++++|+++++++  ++++....+|.++..|..
T Consensus       453 --~~----------~~~~~~~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~  515 (834)
T KOG2194|consen  453 --HS----------LEYLQHDQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLI  515 (834)
T ss_pred             --cc----------cchhhHHHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeee
Confidence              01          1123456778886   788889999999999999999999999998  557788889999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHH
Q 002481          587 TLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASF  666 (917)
Q Consensus       587 ~~~~~~~~P~~~~~~l~~~~~~~~~p~~gR~g~~~~~~P~~~~D~~ia~~~a~~~~l~~~~l~P~i~~~~~~~~i~~~l~  666 (917)
                      ++++||+.|+.+.+|.+++++.+|+|||||+|.+.  |||    .+||.++++++.+.++|++|++|+|||++.|+.+++
T Consensus       516 ~~~i~~~~p~~~~ay~~~~~~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~  589 (834)
T KOG2194|consen  516 TLLICQVGPFLFAAYSTYSLVRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLF  589 (834)
T ss_pred             eeeeeehHhHHHHHHHHHHHHHeeeccccccCCCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHH
Confidence            99999999999999999999999999999999754  895    999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhcCCCCCCCcCc-cceeEEEEEEeccCC------------CCcccCCCccccccccCCCCchhH---HHh
Q 002481          667 ILVGLSIIMVSSGIIPPFSEET-ARAVNIVHIVDASGK------------FGGKQEPSSYIALYSATPGKLTKE---VEQ  730 (917)
Q Consensus       667 ~~~~~~~~~~~~~~~~Pf~~~~-~~r~~~~h~~r~~~~------------~~~~~d~~~~~~~~~~~~~~l~~~---~~~  730 (917)
                      .++.+++++++|.++|||++++ ++|++++|++|+.++            ++..+|+|......+ +-.+++++   ..+
T Consensus       590 ~I~~~~~~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~-~~~~~~~~~~~~~~  668 (834)
T KOG2194|consen  590 GITAVILIIASTSIGFPYRPKTTVQRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPF-TKSNLTDLSSVQAD  668 (834)
T ss_pred             HHHHHHHHHHhcCCcCCccccccceeEEEEecccceecccCceeecccceeeeecccccccCCcc-hhhccccccccccc
Confidence            8888888888999999999875 679999999999543            233455554433222 22233333   356


Q ss_pred             cccCccCCCCcccccccccccccceeccCCCCccCCCC-------CCeeEeeccceeccCCCCCeEEEEEEEeCCCCcEE
Q 002481          731 IKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSD-------IPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLT  803 (917)
Q Consensus       731 C~~el~CG~p~~~~~~~~~~y~~~~~~~~~~~~Wlp~~-------~p~l~l~sk~~~~~~~~~~~~~~~~~~~~G~~~~s  803 (917)
                      |+.+++||+|         +|+  |.+.+.+++|+|++       +|++++++|+.    .+ +...|+++++.|++|++
T Consensus       669 ~~~~~~c~~p---------~y~--w~~~~~~~~~vp~~~~v~~~~~~~l~l~sk~~----~~-~~~~r~~~~i~~~d~~s  732 (834)
T KOG2194|consen  669 CDDEMMCGMP---------VYN--WIKPREQSLWVPNPEPVIGPYPPNLKLLSKTS----LD-NGNLRYEFSITGTDHIS  732 (834)
T ss_pred             ccccccCCce---------eee--ccccCccceEecCCccccCCCCceEEEeeccc----cC-CCceEEEEEEeccCceE
Confidence            9999999996         875  99999999999995       36899999965    33 55889999999999999


Q ss_pred             EEeec---eeecccccc-ccCCCCCCCCccEEEEEEec-CCCceEEEEEEEeccccccccCCCCCCCCCCCeEEEe----
Q 002481          804 LAINA---KEIEDFTFK-VPRDAKSSIYGWHIIEFSGG-KNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLR----  874 (917)
Q Consensus       804 l~i~p---~~l~~WSf~-~~~~~~~~~~~~y~i~~s~G-~~~P~~F~lel~~~~~~~~~~~~~~~~~~~~p~~~l~----  874 (917)
                      ++|.|   +++.+|||. .|..+.  .+ +|+||++|| ++.|++||+|+++.          + +.+++| +|++    
T Consensus       733 ~~i~p~~d~~~~~wsf~~~~~~~~--~~-~~~i~~~yg~~~~p~~F~lel~~~----------~-~~~~v~-~k~~~~~h  797 (834)
T KOG2194|consen  733 LFISPLNDVKVLDWSFTTSPLTEN--KT-PYHIYFSYGLDSTPLNFWLELEKE----------E-GVTDVP-FKLGVSAH  797 (834)
T ss_pred             EEEEecCCceEEEEeccCCccccc--CC-ceEEEEEeecCCCCceEEEEEeec----------c-CccCCc-eEEeeeee
Confidence            99999   599999997 666442  23 499999999 56999999999997          2 367888 8888    


Q ss_pred             --cCCCCCCHHHHHHHhcCCCCcccccccCCCccccc
Q 002481          875 --TDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSF  909 (917)
Q Consensus       875 --~~~~~~t~~~~~fl~~fP~wa~~~~~~~~~~~~~~  909 (917)
                        +|.+++||++++|+++|||||+.+++|+|+.+..|
T Consensus       798 ~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~~~~~~~  834 (834)
T KOG2194|consen  798 YIHDLELITPEYKEFLETLPSWAATVDWSTSYESWIF  834 (834)
T ss_pred             eccchhhcCHHHHHHHHhCCchhhccccccchhheeC
Confidence              67889999999999999999999999999987654

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional	Back alignment and domain information

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]	Back alignment and domain information

>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG2234 Iap Predicted aminopeptidases [General function prediction only]	Back alignment and domain information

>TIGR03176 AllC allantoate amidohydrolase	Back alignment and domain information

>PRK12890 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK12891 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional	Back alignment and domain information

>PRK09133 hypothetical protein; Provisional	Back alignment and domain information

>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional	Back alignment and domain information

>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family	Back alignment and domain information

>PRK09290 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK08262 hypothetical protein; Provisional	Back alignment and domain information

>PRK12893 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK06133 glutamate carboxypeptidase; Reviewed	Back alignment and domain information

>PRK12892 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK08596 acetylornithine deacetylase; Validated	Back alignment and domain information

>PRK07473 carboxypeptidase; Provisional	Back alignment and domain information

>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase	Back alignment and domain information

>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK07906 hypothetical protein; Provisional	Back alignment and domain information

>PRK07907 hypothetical protein; Provisional	Back alignment and domain information

>PRK07338 hypothetical protein; Provisional	Back alignment and domain information

>PRK13983 diaminopimelate aminotransferase; Provisional	Back alignment and domain information

>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase	Back alignment and domain information

>PRK09104 hypothetical protein; Validated	Back alignment and domain information

>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	Back alignment and domain information

>PRK06446 hypothetical protein; Provisional	Back alignment and domain information

>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK08201 hypothetical protein; Provisional	Back alignment and domain information

>PRK04443 acetyl-lysine deacetylase; Provisional	Back alignment and domain information

>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch	Back alignment and domain information

>PRK05469 peptidase T; Provisional	Back alignment and domain information

>TIGR01883 PepT-like peptidase T-like protein	Back alignment and domain information

>PRK13381 peptidase T; Provisional	Back alignment and domain information

>PRK06837 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK06915 acetylornithine deacetylase; Validated	Back alignment and domain information

>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK15026 aminoacyl-histidine dipeptidase; Provisional	Back alignment and domain information

>PRK07079 hypothetical protein; Provisional	Back alignment and domain information

>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK00466 acetyl-lysine deacetylase; Validated	Back alignment and domain information

>PRK07522 acetylornithine deacetylase; Provisional	Back alignment and domain information

>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE)	Back alignment and domain information

>PRK07318 dipeptidase PepV; Reviewed	Back alignment and domain information

>PRK08652 acetylornithine deacetylase; Provisional	Back alignment and domain information

>TIGR01882 peptidase-T peptidase T	Back alignment and domain information

>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis	Back alignment and domain information

>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]	Back alignment and domain information

>PRK07205 hypothetical protein; Provisional	Back alignment and domain information

>PRK06156 hypothetical protein; Provisional	Back alignment and domain information

>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK05111 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family	Back alignment and domain information

>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]	Back alignment and domain information

>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03107 glu_aminopep glutamyl aminopeptidase	Back alignment and domain information

>TIGR01886 dipeptidase dipeptidase PepV	Back alignment and domain information

>PRK08554 peptidase; Reviewed	Back alignment and domain information

>PRK13004 peptidase; Reviewed	Back alignment and domain information

>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase	Back alignment and domain information

>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase	Back alignment and domain information

>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade	Back alignment and domain information

>PRK09961 exoaminopeptidase; Provisional	Back alignment and domain information

>TIGR01891 amidohydrolases amidohydrolase	Back alignment and domain information

>PRK09864 putative peptidase; Provisional	Back alignment and domain information

>TIGR01887 dipeptidaselike dipeptidase, putative	Back alignment and domain information

>TIGR03320 ygeY M20/DapE family protein YgeY	Back alignment and domain information

>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase	Back alignment and domain information

>PRK08737 acetylornithine deacetylase; Provisional	Back alignment and domain information

>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]	Back alignment and domain information

>PLN02693 IAA-amino acid hydrolase	Back alignment and domain information

>PLN02280 IAA-amino acid hydrolase	Back alignment and domain information

>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]	Back alignment and domain information

>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]	Back alignment and domain information

>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins	Back alignment and domain information

>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]	Back alignment and domain information

>PRK02813 putative aminopeptidase 2; Provisional	Back alignment and domain information

>PTZ00371 aspartyl aminopeptidase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		917
2ek8_A		421	Aminopeptidase From Aneurinibacillus Sp. Strain Am-		1e-04

>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 Length = 421

Back alignment and structure

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 182 ILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAH 241
           I++ SH D+V    GA D +S VAV LELARVMS+   + +  + F+    EE GL G+ 
Sbjct: 223 IIIGSHHDSVEKAPGANDDASGVAVTLELARVMSKLKTDTE--LRFITFGAEENGLIGSK 280
Query: 242 SF 243
            +
Sbjct: 281 KY 282

PyMOL of 2ek8

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		917
3tc8_A		309	Leucine aminopeptidase; phosphorylase/hydrolase-li	7e-27
3gux_A		314	Putative Zn-dependent exopeptidase; aminopeptidase	2e-26
1tkj_A		284	Aminopeptidase, SGAP; double-zinc metalloproteinas	2e-18
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	2e-18
3pb6_X		330	Glutaminyl-peptide cyclotransferase-like protein;	3e-16
3kas_A		640	Transferrin receptor protein 1; transferrin recept	5e-16
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	7e-14
1rtq_A		299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	2e-13
2afw_A		329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	3e-13
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	7e-12
1cg2_A		393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	1e-06
1q7l_A		198	Aminoacylase-1; catalysis, enzyme dimerization, si	4e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3rza_A		396	Tripeptidase; phosphorylase/hydrolase-like, struct	7e-05
3gb0_A		373	Peptidase T; NP_980509.1, aminopeptidase PEPT, pep	7e-05
3ct9_A		356	Acetylornithine deacetylase; NP_812461.1, A putati	9e-05
3tx8_A		369	Succinyl-diaminopimelate desuccinylase; peptidase,	2e-04

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Length = 309	Back alignment and structure

 Score =  110 bits (277), Expect = 7e-27
 Identities = 47/310 (15%), Positives = 91/310 (29%), Gaps = 58/310 (18%)

Query: 84  FSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSG 143
           F+   A  +V      GP    + A      Y+     ++K    + A V        + 
Sbjct: 22  FNADSAYAYVANQVAFGPRVPNTAAHKACGDYLA---SELKR---FGAKVYQQEAILTA- 74

Query: 144 ANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGE-------- 195
                   + G  L          R +           +L+ +H D+    +        
Sbjct: 75  --------YDGTKLE--------ARNIIGSFDPENSKRVLLFAHWDSRPYSDHDPDPSKH 118

Query: 196 -----GAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ---- 246
                GA D  S V  +LE+AR + Q        +  +F   E+ G     +  T     
Sbjct: 119 RTPLDGADDGGSGVGALLEIARQIGQK--APGIGIDIIFFDAEDYGTPEFVTDYTPDSWC 176

Query: 247 ----------HPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIG 296
                     H  + T    + L+ +G    +   +      A      V         G
Sbjct: 177 LGTQFWAKNPHVPNYTAEYGILLDMVGGKNATFFKEQQSLRAAAPIVEMVWSAARDLGYG 236

Query: 297 QDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSA------VYHTKNDRLDLLKPGSLQ 350
           +    +       D Q       +  +D    D  +       +HT+ D ++ +   +L+
Sbjct: 237 KYFINAAGGAITDDHQYVISGRNIPSIDIINYDPESKTGFASYWHTQKDNMENIDRETLK 296

Query: 351 HLGENMLDFL 360
             G+ +L+ +
Sbjct: 297 AAGQTVLEVI 306

PyMOL of 3tc8

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Length = 314	Back alignment and structure

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421	Back alignment and structure

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Length = 330	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Length = 640	Back alignment and structure

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Length = 444	Back alignment and structure

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299	Back alignment and structure

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Length = 329	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Length = 707	Back alignment and structure

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393	Back alignment and structure

>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 198	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Length = 396	Back alignment and structure

>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Length = 373	Back alignment and structure

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356	Back alignment and structure

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		917
d2afwa1		329	c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransf	1e-24
d3bi1a3		304	c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep	2e-24
d1de4c3		294	c.56.5.5 (C:122-189,C:383-608) Transferrin recepto	3e-21
d1rtqa_		291	c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti	4e-20
d1tkja1		277	c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces gr	6e-10
d2grea2		233	c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptid	4e-05
d1lfwa1		272	c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {	2e-04
d1cg2a1		276	c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2,	0.001
g1q7l.1		280	c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain	0.001
d1r3na1		322	c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-	0.003

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Length = 329	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 1e-24
 Identities = 52/349 (14%), Positives = 109/349 (31%), Gaps = 69/349 (19%)

Query: 59  SYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQ--LGPHAVGSDALDRALQYV 116
           +      +  H P  L +    R+        +  +   Q  L     GS     A Q++
Sbjct: 1   ASAWPEEKNYHQPAILNSSAL-RQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQHI 59

Query: 117 LAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASE 176
                 ++  +  +AD  ++     S                Y   ++I+  + P     
Sbjct: 60  ------MQRIQRLQADWVLEIDTFLSQ-----------TPYGYRSFSNIISTLNPTA--- 99

Query: 177 AGENAILVSSHIDTVSAGE-------GAGDCSSCVAVMLELARVMSQW--------AHEF 221
             +  ++++ H D+            GA D +   A+MLELAR + +           + 
Sbjct: 100 --KRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKP 157

Query: 222 KNAVIFLFNTGEEEG--------LNGAHSFVTQHPWS------------TTIRVAVDLEA 261
             ++  +F  GEE          L G+     +   +              + + V L+ 
Sbjct: 158 DLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDL 217

Query: 262 MGIGGRSALFQAGPNLWAVENFAAVAKY--PSGQIIGQDLFASGVFETAT------DFQV 313
           +G    +       +    E   A+       G +    L        +       D   
Sbjct: 218 IGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIP 277

Query: 314 YTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQ 362
           +    G+  L    +    V+HT +D  + L   ++ +L + +  F+L+
Sbjct: 278 FLR-RGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLE 325

PyMOL of d2afwa1

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304	Back information, alignment and structure

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 294	Back information, alignment and structure

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291	Back information, alignment and structure

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Length = 277	Back information, alignment and structure

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Length = 233	Back information, alignment and structure

>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 272	Back information, alignment and structure

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 276	Back information, alignment and structure

>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 322	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		917
d1tkja1		277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	100.0
d2afwa1		329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	100.0
d1rtqa_		291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	100.0
d1de4c3		294	Transferrin receptor ectodomain, protease-like dom	100.0
d3bi1a3		304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	100.0
g1q7l.1		280	Aminoacylase-1, catalytic domain {Human (Homo sapi	99.87
d1vhoa2		248	Putative endoglucanase TM1048, catalytic domain {T	99.85
d1cg2a1		276	Carboxypeptidase G2, catalytic domain {Pseudomonas	99.84
d1yloa2		264	Aminopeptidase YpdE {Shigella flexneri [TaxId: 623	99.84
d1vhea2		275	Hypothetical protein YsdC, catalytic domain {Bacil	99.8
d2fvga2		255	Endoglucanase TM1049 {Thermotoga maritima [TaxId:	99.76
d1fnoa4		295	Peptidase T (tripeptidase), catalytic domain {Salm	99.75
d1z2la1		293	Allantoate amidohydrolase AllC catalytic domain {E	99.75
d2grea2		233	Deblocking aminopeptidase YhfE {Bacillus cereus [T	99.72
d1r3na1		322	Peptidase-like beta-alanine synthase, catalytic do	99.66
d1vgya1		262	Succinyl-diaminopimelate desuccinylase, catalytic	99.47
d1lfwa1		272	Aminopeptidase PepV {Lactobacillus delbrueckii [Ta	99.43
d1xmba1		273	IAA-amino acid hydrolase, catalytic domain {Mouse-	98.73
d1ysja1		261	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	98.58
d1y0ya2		255	Frv operon protein FrvX, catalytic domain {Pyrococ	98.53
d1y7ea2		322	Probable aminopeptidase ApeA {Borrelia burgdorferi	93.87
d1y0ya2		255	Frv operon protein FrvX, catalytic domain {Pyrococ	90.69

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=100.00  E-value=4.5e-40  Score=295.28  Aligned_cols=247  Identities=17%  Similarity=0.226  Sum_probs=201.4

Q ss_pred             CCCCHHHHHHHHHHHHC-----CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99989999999999871-----7998899988999999999999830313588511999977326897434543235710
Q 002481           82 RGFSELEAMKHVKALTQ-----LGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT  156 (917)
Q Consensus        82 ~~fs~erA~~~L~~L~~-----igpR~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~~~~~~g~~~~~~~~~~~~~  156 (917)
                      ++++.+++.++|.+|.+     .|+|..||++++++++||.++|+++|      .+++++.|....              
T Consensus         2 p~i~~~~~~~~l~~l~~~~~~~~g~R~~gs~~~~~a~~yi~~~l~~~G------~~~~~~~~~~~~--------------   61 (277)
T d1tkja1           2 PDIPLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAG------YTTTLQQFTSGG--------------   61 (277)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHT------CEEEEEEEEETT--------------
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEEEECCC--------------
T ss_conf             989999999999999975357898988989999999999999999879------948997400257--------------


Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             11036254999983788898998779997305665799998897259999999999998528989962999980876789
Q 002481          157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEG  236 (917)
Q Consensus       157 ~~y~~~~NII~~i~g~~~~~~~~~~ILi~aH~DSv~~spGA~Dd~sgva~lLEi~r~L~~~~~~~~~~I~Flf~~~EE~g  236 (917)
                         .+..|||++++|+    .+++.|+++|||||++.+|||.||++|||++||++|.|++.+.+|+++|+|+|+++||.|
T Consensus        62 ---~~~~Nvi~~~~g~----~~~~~i~~~aH~D~~~~~~Ga~D~~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g  134 (277)
T d1tkja1          62 ---ATGYNLIANWPGG----DPNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELG  134 (277)
T ss_dssp             ---EEEEEEEEECSCS----EEEEEEEEEEECCCCTTSCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGT
T ss_pred             ---CCCCCEEEEECCC----CCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf             ---6554708998887----899779997341045454344798640289999999988516787753477633544332


Q ss_pred             CCCHHHHHHCCCC--CCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             7665889840997--57940899950476799820561389967899999980---699974333223247997899835
Q 002481          237 LNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVA---KYPSGQIIGQDLFASGVFETATDF  311 (917)
Q Consensus       237 l~GS~~f~~~h~~--a~~v~a~iNLD~~G~gg~~~lfq~g~~~~li~~y~~~a---~~p~~~~l~~e~f~~g~ips~TD~  311 (917)
                      +.||++|+++|++  .+++.++||+||+|.++...+.+. .++.+.+.+.+..   ..+..  ....      ....|||
T Consensus       135 ~~Gs~~~~~~~~~~~~~~i~~~inlD~vG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~SDh  205 (277)
T d1tkja1         135 LIGSKFYVNNLPSADRSKLAGYLNFDMIGSPNPGYFVYD-DDPVIEKTFKNYFAGLNVPTE--IETE------GDGRSDH  205 (277)
T ss_dssp             SHHHHHHHHHSCHHHHTTEEEEEEECCCCCSSCCCEECC-SSHHHHHHHHHHHHHHTCCCE--ECCS------STTCSTH
T ss_pred             CCCCHHHHHHHHCCCHHHEEEEECCCCCCCCCCCEEEEC-CCHHHHHHHHHHHHHCCCCCC--CCCC------CCCCCCC
T ss_conf             345299998732130223013535454547988637853-886789999999985499851--0357------8888650


Q ss_pred             HHHHHCCCCEEEEEEEC-------------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             77520599739998541-------------------8999998968983799988999999999999999863
Q 002481          312 QVYTEVAGLSGLDFAYT-------------------DKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS  365 (917)
Q Consensus       312 ~~F~~~~GIPgld~a~~-------------------~~~~~YHT~~Dt~d~I~~~sLq~~g~~vl~~v~~la~  365 (917)
                      .+|.+ .|||.+.+...                   ...++|||+.||+|+++++.+++.++.++.++++|||
T Consensus       206 ~~F~~-~GIP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~YHt~~Dt~d~l~~~~l~~~~~~v~~~v~~LAn  277 (277)
T d1tkja1         206 APFKN-VGVPVGGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAIWTLSS  277 (277)
T ss_dssp             HHHHH-TTCCEEEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHH-CCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             55998-7987897005875453156665305645563778889974774458999999999999999999859

PyMOL of d1tkja1

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}	Back information, alignment and structure

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}	Back information, alignment and structure

>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}	Back information, alignment and structure

>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}	Back information, alignment and structure

>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}	Back information, alignment and structure

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]}	Back information, alignment and structure

>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure