Citrus Sinensis ID: 002484

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------
Protein Sequence
MESRISDYAVASGGAACVNAVTHDVRSLSGWNTGEPSSRLSSQNQMNDDVLEMEQGWTTSYGDHTGGGPMLEERKLEPTSALFPGRRNFGHSGDRDRSGPSLLLGSSSSHAPQSLNLNAGYMGNSGSVGSLSGNSGFMVEENNDDASLTLGGWGLSCKRKALEGTSGQYCSAGSSSCFQQGENHASACYDTSSSLSLSPPLRNSLGFGMRAVEDCFPSSGSIGNTENCPRSFGRIGVPGHQQESVPFHLSSRGTSGYLNNAAPHSSQIPLPFSNSLELRSTGANTNAAQNLPQDVHVSAFTRNVHRFPWSGASSPRANNLSSSFTSGERDAALQEEGNTSSIPRNNVEQHPMFVRSVEMRNMAQDPTSWGLATGSSSGGIYLTAQVGSNSSSQPSPPPAMSPHHKYSTHSQQRLSEFSWPLFPSAPQNPNLNAGYAGNNGSGGQGMGIGLGQNPCNSSGLETEQESLASAASDKVGTSSRSSGFMVEENNGNAGSSLGGWGLSCKRKALEGTSAQSCSAGSSSCFPLAENGVSARNDPSSSLSLSLPLRDSPTACPLEQSNPRFGVGMRIVEDGFPPPGITGNSENCLRSFGRRGNPRHRQESVPFSLLSRGSSRHSNIASPHSPAIPLPYSASLGFRSAAAQDANINAPQIQPHPVHVSSFSRNMHHFPWRGASSSRAGSLSISSTSGERGATLREEGNARSIPRNNAEHPMYVSSAGMRNMVQDPANWGLVTRSSSGDVSSARIGSSSSIHPLPGPAWIPHPIPSTHSHRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHccccHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHccEEEccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccEccccccccccccccccccEEccccccccccccccEEEEccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHcccccHHccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHEEEccHHHcccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHcccEEcccccccccccccEEEEEHHccccccEEEEcccccHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MESRISDYAVASGGAACVNAVThdvrslsgwntgepssrlssqnqmnddVLEMEQGWttsygdhtgggpmleerkleptsalfpgrrnfghsgdrdrsgpslllgsssshapqslnlnagymgnsgsvgslsgnsgfmveennddasltlggwglsckrkalegtsgqycsagssscfqqgenhasacydtssslslspplrnslgfgmravedcfpssgsigntencprsfgrigvpghqqesvpfhlssrgtsgylnnaaphssqiplpfsnslelrstgantnaaqnlpqdvhvsaftrnvhrfpwsgassprannlsssftsgERDAALqeegntssiprnnveqhpMFVRSVEMrnmaqdptswglatgsssggIYLTAqvgsnsssqpspppamsphhkysthsqqrlsefswplfpsapqnpnlnagyagnngsggqgmgiglgqnpcnssgletEQESLASAasdkvgtssrssgfmveenngnagsslggwglsckrkalegtsaqscsagssscfplaengvsarndpssslslslplrdsptacpleqsnprfgvgmrivedgfpppgitgnsenclrsfgrrgnprhrqesvpfsllsrgssrhsniasphspaiplpysaslgfrsaaaqdaninapqiqphpvhvssfsrnmhhfpwrgasssragslsisstsgergatlreegnarsiprnnaehpmyvssagmrnmvqdpanwglvtrsssgdvssarigssssihplpgpawiphpipsthshrLMSEIRQVLTAMHrgenlriedfmlfepfvyhglaemhdrhrdmrldvdnmSYEELLALEERIgdvstglsEETIMKIMKREKyvstetesptdlepccicqeeytdgddlgvldcghnfhTDCIKLWLMqknlcpickttalpt
Flexible Loop (DISEMBL)
MESRISDYAVASGGAACVNAVTHDVRSLSGWNTGEPSSRLSSQNQMNDDVLEMEQGWTTSYGDHTGGGPMLEERKLEPTSALFPGRRNFGHSGDRDRSGPSLLLGSSSSHAPQSLNLNAGYMGNSGSVGSLSGNSGFMVEENNDDASLTLGGWGLSCKRKALEGTSGQYCSAGSSSCFQQGENHASACYDTSSSLSLSPPLRNSLGFGMRAVEDCFPSSGSIGNTENCPRSFGRIGVPGHQQESVPFHLSSRGTSGYLNNAAPHSSQIPLPFSNSLELRSTGANTNAAQNLPQDVHVSAFTRNVHRfpwsgasspranNLSSSFTSGERDAALQEegntssiprnnveqHPMFVRSVEMRNMAQDPTSWGLATGSSSGGIYLTAQVGSNSSSQPSPPPAMSPHHKYSTHSQQRLSEFSWPLFPSAPQNPNLNAGYAGNNGSGGQGMGIGLGQNPCNSSGLETEQESLASAASDKVGTSSRSSGFMVEENNGNAGSSLGGWGLSCKRKALEGTSAQSCSAGSSSCFPLAENGVSARNDPSSSLSLSLPLRDSPTACPLEQSNPRFGVGMRIVEDGFPPPGITGNSENCLRSFGrrgnprhrqesvPFSLLSRGSSRHSNIASPHSPAIPLPYSASLGFRSAAAQDANINAPQIQPHPVHVSSFSRNMHHFPWRgasssragslsisstsgergatlreegnarsiprnnaEHPMYVSSAGMRNMVQDPANWGLVTRSSSGDVSSARIGSSSSIHPLPGPAWIPHPIPSTHSHRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALeerigdvstglseETIMKIMKREKyvstetesptdlepCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT
Low Complexity Region (SEG)
MESRISDYAVASGGAACVNAVTHDVRSLSGWNTGEPSSRLSSQNQMNDDVLEMEQGWTTSYGDHTGGGPMLEERKLEPTSALFPGRRNFGHSGDRDRsgpslllgssssHAPQSLNLNAGYMgnsgsvgslsgnsgFMVEENNDDASLTLGGWGLSCKRKALEGTSGQYCSAGSSSCFQQGENHASACYDTssslslspplrnslGFGMRAVEDCFPSSGSIGNTENCPRSFGRIGVPGHQQESVPFHLSSRGTSGYLNNAAPHSSQIPLPFSNSLELRSTGANTNAAQNLPQDVHVSAFTRNVHRFPWSGASSPRANNLSSSFTSGERDAALQEEGNTSSIPRNNVEQHPMFVRSVEMRNMAQDPTSWGLATGSSSGGIYLTAQVGsnsssqpspppamspHHKYSTHSQQRLSEFSWPLFPSAPQnpnlnagyagnngsggqgmgiglgqnpCNSSGLETEQESLASAASDKVGTSSRSSGFMVEENNGNAGSSLGGWGLSCKRKALEGTsaqscsagssscFPLAENGVSARNDpssslslslplRDSPTACPLEQSNPRFGVGMRIVEDGFPPPGITGNSENCLRSFGRRGNPRHRQESVPFSLLSRGSSRHSNIASPHSPAIPLPYSASLGFRSAAAQDANINAPQIQPHPVHVSSFSRNMHHFPWrgasssragslsisstsgergATLREEGNARSIPRNNAEHPMYVSSAGMRNMVQDPANWGLVTrsssgdvssarigssssiHPLPGPAWIPHPIPSTHSHRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT
Disordered region (IsUnstruct)
*******YAVASGGAACVNAVTHDVRSL***********************************************************************************************************************LTLGGWGLSCKRKALEG****YC************************************FGMRAVEDC*********************************************************************************VSAFTRNVHRF**********************************************************************************************************************************************************************************************************************************************************************I*********************************************************************************************************************************************************************************************WI***********LMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMK***Y*********DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTT****
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VY****EMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKR***************PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP*
Disordered Region (DISEMBL)
**********ASGGAACVNAVTHDVRSLS**************NQMNDDVLEMEQGWTTSYGDHTGGGPMLEERKLEPTSALFPGRRNFGHSGDRDRSGPSLLLGSSSSHAPQSLNLNAGYMGNSGSVGSLSGNSGFMVEENNDDASLTLGGWGLSCKRKALEGTSGQYCSAGSSSCFQQGE**************LSPPLRNSLGFGMRAVEDCFPSSGSIGNTENCPRSFGRIGVPGHQQESVPFHLSSRGTSGYLNNAAPHSSQIPLPFSNSLELRSTGANTNAAQNLPQDVHVSAFTRNVHRFPWS****************************TSSIPRNNVEQHPMFVRSVEMRNMAQDPTSWGLATGSSSGGIYLTAQ****************************LSEFSWPLFPSAPQNPNLNAGYAGNNGSGGQGMGIGLGQNPCN**************************GFMVEENNGNAGSSLGGWGLSCKRKA*************SSCFPLAEN**************SLPLRDSPTACPLEQSNPRFGVGMRIVEDGFPPPGITGNSENCLRSFGRRGNPRHRQESVPFSLL************PHSPAIPLPYSASLGFRSAAAQDANINAPQIQPHPVHVSSFSRNMHHFPWR**************************GNARSIPRNNAEHPMYVSSAGMRNMVQDPANWGLVTR***************SIHPLPGPAWIPHPIPSTHSHRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKRE************LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT
Disordered Region (DISPRO)
*****SDYAVASGGAACVNAVTHDVRSLSGWNT**********************************GPMLEERKLEPTSALFPGRRNFGHSGDRDRSGPSLLLGSSSSHAPQSLNLNAGYMGNSGSVGSLSGN****VEENN********GWGLSCKRKAL***********************S****TSSSLSLSPPLRNSLGFGMRAVEDCFPSSGSIGNTENCPRSFGRIGVPGHQQESVPFHLSSRGT*********HSSQIPLPFSNSLELRSTGANTNAAQNLPQDVHVSAFTRNVHRFPW*****************************TSSIPRNNVEQHPMFVRSVEMRNMAQDPTSW****************************************************************************************************************************************************************************LSLSLPLRDSPTACPLEQSNP**************************************************************************************************************************************************************************************************GPAWIPHPIPSTHSHRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTET***TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESRISDYAVASGGAACVNAVTHDVRSLSGWNTGEPSSRLSSQNQMNDDVLEMEQGWTTSYGDHTGGGPMLEERKLEPTSALFPGRRNFGHSGDRDRSGPSLLLGSSSSHAPQSLNLNAGYMGNSGSVGSLSGNSGFMVEENNDDASLTLGGWGLSCKRKALEGTSGQYCSAGSSSCFQQGENHASACYDTSSSLSLSPPLRNSLGFGMRAVEDCFPSSGSIGNTENCPRSFGRIGVPGHQQESVPFHLSSRGTSGYLNNAAPHSSQIPLPFSNSLELRSTGANTNAAQNLPQDVHVSAFTRNVHRFPWSGASSPRANNLSSSFTSGERDAALQEEGNTSSIPRNNVEQHPMFVRSVEMRNMAQDPTSWGLATGSSSGGIYLTAQVGSNSSSQPSPPPAMSPHHKYSTHSQQRLSEFSWPLFPSAPQNPNLNAGYAGNNGSGGQGMGIGLGQNPCNSSGLETEQESLASAASDKVGTSSRSSGFMVEENNGNAGSSLGGWGLSCKRKALEGTSAQSCSAGSSSCFPLAENGVSARNDPSSSLSLSLPLRDSPTACPLEQSNPRFGVGMRIVEDGFPPPGITGNSENCLRSFGRRGNPRHRQESVPFSLLSRGSSRHSNIASPHSPAIPLPYSASLGFRSAAAQDANINAPQIQPHPVHVSSFSRNMHHFPWRGASSSRAGSLSISSTSGERGATLREEGNARSIPRNNAEHPMYVSSAGMRNMVQDPANWGLVTRSSSGDVSSARIGSSSSIHPLPGPAWIPHPIPSTHSHRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	917	2.2.26 [Sep-21-2011]
Q9LT17	340	E3 ubiquitin ligase BIG B	no	no	0.100	0.270	0.404	1e-13
E9QAU8	347	RING finger protein 165 O	yes	no	0.095	0.253	0.39	7e-12
Q6ZSG1	346	RING finger protein 165 O	yes	no	0.095	0.254	0.39	7e-12
Q8L649	248	E3 ubiquitin ligase BIG B	no	no	0.105	0.391	0.373	9e-11
Q0V9R0	954	E3 ubiquitin-protein liga	yes	no	0.101	0.097	0.362	1e-10
Q66J97	967	E3 ubiquitin-protein liga	N/A	no	0.101	0.096	0.362	1e-10
Q90ZT7	923	E3 ubiquitin-protein liga	N/A	no	0.101	0.100	0.362	2e-10
Q6NRV8	959	E3 ubiquitin-protein liga	N/A	no	0.101	0.096	0.362	2e-10
Q99ML9	989	E3 ubiquitin-protein liga	no	no	0.095	0.088	0.342	7e-10
Q6ZNA4	994	E3 ubiquitin-protein liga	no	no	0.095	0.088	0.342	8e-10

>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 2/94 (2%)

Query: 817 RLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEE 876
            +D D +SYEELLAL + +G  S GLS +TI  +  + +Y   + ++ T+ E C IC+ +
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTIASLPSK-RYKEGDNQNGTN-ESCVICRLD 294

Query: 877 YTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC 910
           Y D +DL +L C H++H++CI  WL    +CP+C
Sbjct: 295 YEDDEDLILLPCKHSYHSECINNWLKINKVCPVC 328

E3 ubiquitin-ligase probably involved in organ size regulation.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 824 SYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTE-----------TESPTDLEPCCI 872
           SYEELL LE+R+G+V+ G  + TI +     KY                ES TD E C I
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTD-EKCTI 297

Query: 873 CQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           C     DG+D+  L C H FH  C+  WL     CPIC+ 
Sbjct: 298 CLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 337

Mus musculus (taxid: 10090)

>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 824 SYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTE-----------TESPTDLEPCCI 872
           SYEELL LE+R+G+V+ G  + TI +     KY                ES TD E C I
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTD-EKCTI 296

Query: 873 CQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           C     DG+D+  L C H FH  C+  WL     CPIC+ 
Sbjct: 297 CLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 336

Homo sapiens (taxid: 9606)

>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1

 Score = 69.7 bits (169), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 2/99 (2%)

Query: 818 LDVDNMSYEELLALEERIGDVSTGLSEETIMKI-MKREKYVSTETESPTDLEPCCICQEE 876
           +D D M+YEEL+ L E +G  S GLS+E I  +  K+ K+ S  +      E C ICQ +
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAG-ERCVICQLK 203

Query: 877 YTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
           Y  G+    L C H +H++CI  WL    +CP+C +   
Sbjct: 204 YKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEVF 242

E3 ubiquitin-ligase that limits organ size, and possibly seed size, in a dose-dependent manner. Negatively regulates the duration of cell proliferation in leaves and petals independently of the major phytohormones (e.g. auxin, cytokinin, gibberellin, brassinosteroids, ethylene, abscisic acid, jasmonic acid), probably by targeting growth stimulators for degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 20/113 (17%)

Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
           +EEL+ LEER+G+V+ G S+ TI +     KY  VST+  S   L               
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899

Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT---TALPT 917
             C IC     +G+D+  L C H FH  C+  WL+    CPIC+    T LPT
Sbjct: 900 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 952

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c PE=2 SV=1

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 20/113 (17%)

Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
           +EEL+ LEER+G+V+ G S+ TI +     KY  VST+  S   L               
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912

Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT---TALPT 917
             C IC     +G+D+  L C H FH  C+  WL+    CPIC+    T LPT
Sbjct: 913 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 965

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis GN=rnf111-a PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 20/113 (17%)

Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
           +EEL+ LEER+G+V+ G S+ TI +     KY  VST+  S   L               
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868

Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT---TALPT 917
             C IC     +G+D+  L C H FH  C+  WL+    CPIC+    T LPT
Sbjct: 869 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 921

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 20/113 (17%)

Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
           +EEL+ LEER+G+V+ G S+ TI +     KY  VST+  S   L               
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904

Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT---TALPT 917
             C IC     +G+D+  L C H FH  C+  WL+    CPIC+    T LPT
Sbjct: 905 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 957

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 17/105 (16%)

Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
           +EEL+ LEER+G+V+ G S+ TI +     KY  V+T+  S   L               
Sbjct: 875 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 934

Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
             C IC     +G+D+  L C H FH  C+  WL+    CPIC+ 
Sbjct: 935 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 979

Acts in the Nodal pathway of mesoderm patterning during embryonic development. Acts downstream AXIN1 as an E3 ubiquitin-protein ligase which promotes the ubiquitination of inhibitory SMADs such as SMAD7, induces their proteasomal degradation and thereby enhances the transcriptional activity of TGF-beta and BMP. Activates Smad3/Smad4-dependent transcription by triggering signal-induced SnoN degradation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1 SV=3

 Score = 66.6 bits (161), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 17/105 (16%)

Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
           +EEL+ LEER+G+V+ G S+ TI +     KY  V+T+  S   L               
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 939

Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
             C IC     +G+D+  L C H FH  C+  WL+    CPIC+ 
Sbjct: 940 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 984

Acts in the NODAL pathway of mesoderm patterning during embryonic development. Acts downstream AXIN1 as an E3 ubiquitin-protein ligase which promotes the ubiquitination of inhibitory SMADs such as SMAD7, induces their proteasomal degradation and thereby enhances the transcriptional activity of TGF-beta and BMP. Activates Smad3/Smad4-dependent transcription by triggering signal-induced SnoN degradation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	917
357475291	669	RING finger protein [Medicago truncatula	0.527	0.723	0.397	2e-82
357475293	557	RING finger protein [Medicago truncatula	0.519	0.854	0.399	9e-82
224105571	179	predicted protein [Populus trichocarpa]	0.160	0.821	0.795	2e-71
224060497	219	predicted protein [Populus trichocarpa]	0.160	0.671	0.816	9e-71
356519717	715	PREDICTED: uncharacterized protein LOC10	0.081	0.104	0.773	4e-67
356562271	682	PREDICTED: uncharacterized protein LOC10	0.522	0.702	0.366	5e-66
225428847	734	PREDICTED: uncharacterized protein LOC10	0.157	0.196	0.761	9e-66
255555411	734	protein binding protein, putative [Ricin	0.095	0.119	0.753	9e-66
147821644	553	hypothetical protein VITISV_022802 [Viti	0.157	0.260	0.761	3e-65
297741257	159	unnamed protein product [Vitis vinifera]	0.157	0.905	0.761	1e-64

>gi|357475291|ref|XP_003607931.1| RING finger protein [Medicago truncatula] gi|355508986|gb|AES90128.1| RING finger protein [Medicago truncatula]

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 225/566 (39%), Positives = 297/566 (52%), Gaps = 82/566 (14%)

Query: 427 QNPNLNAGYAGNNGSGGQGMGIGLGQNPCNSSGLETEQESLASAASDKVGTSSRSSGFMV 486
           Q  N    +  N+   G+G   G G N  +  GL+ E+ S+ S++ ++ G SS SSG+M 
Sbjct: 107 QGINFGMEHIANSSDRGKGKETGSGVNNNDPFGLDREKTSIGSSSFNQTGASSASSGYMA 166

Query: 487 EENNGNAGSSLGGWGLSCKRKALEGTSAQSCSAGSSSCFPLAENGV-----SARNDPSSS 541
             ++G++ SSL  WG SCKRKALE +S Q C+ GSSS    +ENG         N P S 
Sbjct: 167 WGDSGSSSSSLANWGPSCKRKALEDSSMQLCTGGSSSSLVQSENGYWLTDSVDLNVPGSL 226

Query: 542 LSLSLPLRDSPTACPLEQSNPRFGVGMRIVEDGFPP-PGITGNSENCLRSFGRR------ 594
             LS PL D     P  Q N R  V      + FP    I  N E  LR+F RR      
Sbjct: 227 GDLS-PLEDFRVTSPPFQQNTRNEVRQE-ASNAFPSMVSIAENVERPLRNFDRRMTHLHH 284

Query: 595 -----------GNPRHRQ--------------ESVPFSLLSRGSSRHSNIASPHSPAI-- 627
                      G+ RH                ES+   L +  ++ +S +    SP++  
Sbjct: 285 PESVPLNLTSTGSARHHNYPSPHQIPGSLSFNESLDLRLAAGVTAANSAVPQNQSPSLHM 344

Query: 628 -PLPYSASLGFRSAAAQDANINAPQIQPHPVHVSSFSRNMHHFPWRGASSS---RAGSLS 683
            P P++ +   R A +  +  +  +      ++  F R+    P    +SS    AG  S
Sbjct: 345 HPFPWNRAANPRVARSSSSYSSGERAVRDDFNLRIFPRDSTEHPMNMPASSGHEPAGWYS 404

Query: 684 ISSTSGERGAT-----LREEGNARSIPRNNAEHPMYVSSAGMRNMVQDPANWGLV----- 733
            SS     G       +    N  S+P  +      V +  ++  V + + W L      
Sbjct: 405 SSSNLNNAGGIPPPSWIGSTSNVHSLPNPSWTFNHEVPTENLQR-VSEFSPWSLFPSISS 463

Query: 734 --------TRSSSGDVSSARIGSSSSIHPLPGPAWI-----------PH-----PIPSTH 769
                   + S+SG  S ++   SSS  P P P+++           PH     P  +  
Sbjct: 464 ASGTHNGHSSSTSGPPSFSQ--GSSSNQPHPRPSFMTERRGGDVLSAPHSLRTLPFDNEG 521

Query: 770 SHRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELL 829
             RL+SEIRQVL AM RGENLR ED+MLF+PF+YHG+AEMHDRHR+MRLDVDNMSYEELL
Sbjct: 522 RRRLISEIRQVLLAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELL 581

Query: 830 ALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCG 889
           ALEERIGDVSTGLSE+ I K+MK+  Y+S  TES +DLEPCCICQEEY DG +LG+LDCG
Sbjct: 582 ALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLGLLDCG 641

Query: 890 HNFHTDCIKLWLMQKNLCPICKTTAL 915
           H FH++CI  WLMQKNLCPICKTTAL
Sbjct: 642 HEFHSNCITQWLMQKNLCPICKTTAL 667

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475293|ref|XP_003607932.1| RING finger protein [Medicago truncatula] gi|355508987|gb|AES90129.1| RING finger protein [Medicago truncatula]

 Score =  311 bits (797), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 223/558 (39%), Positives = 295/558 (52%), Gaps = 82/558 (14%)

Query: 435 YAGNNGSGGQGMGIGLGQNPCNSSGLETEQESLASAASDKVGTSSRSSGFMVEENNGNAG 494
           +  N+   G+G   G G N  +  GL+ E+ S+ S++ ++ G SS SSG+M   ++G++ 
Sbjct: 3   HIANSSDRGKGKETGSGVNNNDPFGLDREKTSIGSSSFNQTGASSASSGYMAWGDSGSSS 62

Query: 495 SSLGGWGLSCKRKALEGTSAQSCSAGSSSCFPLAENGV-----SARNDPSSSLSLSLPLR 549
           SSL  WG SCKRKALE +S Q C+ GSSS    +ENG         N P S   LS PL 
Sbjct: 63  SSLANWGPSCKRKALEDSSMQLCTGGSSSSLVQSENGYWLTDSVDLNVPGSLGDLS-PLE 121

Query: 550 DSPTACPLEQSNPRFGVGMRIVEDGFPP-PGITGNSENCLRSFGRR-------------- 594
           D     P  Q N R  V      + FP    I  N E  LR+F RR              
Sbjct: 122 DFRVTSPPFQQNTRNEVRQE-ASNAFPSMVSIAENVERPLRNFDRRMTHLHHPESVPLNL 180

Query: 595 ---GNPRHRQ--------------ESVPFSLLSRGSSRHSNIASPHSPAI---PLPYSAS 634
              G+ RH                ES+   L +  ++ +S +    SP++   P P++ +
Sbjct: 181 TSTGSARHHNYPSPHQIPGSLSFNESLDLRLAAGVTAANSAVPQNQSPSLHMHPFPWNRA 240

Query: 635 LGFRSAAAQDANINAPQIQPHPVHVSSFSRNMHHFPWRGASSS---RAGSLSISSTSGER 691
              R A +  +  +  +      ++  F R+    P    +SS    AG  S SS     
Sbjct: 241 ANPRVARSSSSYSSGERAVRDDFNLRIFPRDSTEHPMNMPASSGHEPAGWYSSSSNLNNA 300

Query: 692 GAT-----LREEGNARSIPRNNAEHPMYVSSAGMRNMVQDPANWGLV------------- 733
           G       +    N  S+P  +      V +  ++  V + + W L              
Sbjct: 301 GGIPPPSWIGSTSNVHSLPNPSWTFNHEVPTENLQR-VSEFSPWSLFPSISSASGTHNGH 359

Query: 734 TRSSSGDVSSARIGSSSSIHPLPGPAWI-----------PH-----PIPSTHSHRLMSEI 777
           + S+SG  S ++   SSS  P P P+++           PH     P  +    RL+SEI
Sbjct: 360 SSSTSGPPSFSQ--GSSSNQPHPRPSFMTERRGGDVLSAPHSLRTLPFDNEGRRRLISEI 417

Query: 778 RQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGD 837
           RQVL AM RGENLR ED+MLF+PF+YHG+AEMHDRHR+MRLDVDNMSYEELLALEERIGD
Sbjct: 418 RQVLLAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGD 477

Query: 838 VSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCI 897
           VSTGLSE+ I K+MK+  Y+S  TES +DLEPCCICQEEY DG +LG+LDCGH FH++CI
Sbjct: 478 VSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLGLLDCGHEFHSNCI 537

Query: 898 KLWLMQKNLCPICKTTAL 915
             WLMQKNLCPICKTTAL
Sbjct: 538 TQWLMQKNLCPICKTTAL 555

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105571|ref|XP_002313858.1| predicted protein [Populus trichocarpa] gi|222850266|gb|EEE87813.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (708), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 117/147 (79%), Positives = 134/147 (91%)

Query: 771 HRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLA 830
           HRL+SEIRQVL AM RGENLR+ED+MLF+P +YHG+AEMHD+HRDMRLDVDNMSYEELLA
Sbjct: 33  HRLISEIRQVLNAMRRGENLRVEDYMLFDPLIYHGMAEMHDQHRDMRLDVDNMSYEELLA 92

Query: 831 LEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
           LEERIGDVSTGLS ETI+K+MK++K+V   TESP DLEPCCICQEEY DGDD+G++DCGH
Sbjct: 93  LEERIGDVSTGLSGETILKLMKKQKHVPVSTESPADLEPCCICQEEYVDGDDMGIIDCGH 152

Query: 891 NFHTDCIKLWLMQKNLCPICKTTALPT 917
           +FH +CIK WLMQKNLCPICK TAL T
Sbjct: 153 DFHANCIKQWLMQKNLCPICKMTALIT 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060497|ref|XP_002300224.1| predicted protein [Populus trichocarpa] gi|222847482|gb|EEE85029.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (703), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 120/147 (81%), Positives = 136/147 (92%)

Query: 771 HRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLA 830
           HRL+SEIRQVL AM RGENLR+ED+MLF+P +YHG+AEMHDRHRDMRLDVDNMSYEELLA
Sbjct: 73  HRLISEIRQVLNAMRRGENLRVEDYMLFDPMIYHGMAEMHDRHRDMRLDVDNMSYEELLA 132

Query: 831 LEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
           LEERIGDVSTGLSEETI+K++K+EK+V   TESP DLEPCCICQEEY DGDD+G++DCGH
Sbjct: 133 LEERIGDVSTGLSEETILKLLKQEKHVPISTESPADLEPCCICQEEYVDGDDMGIIDCGH 192

Query: 891 NFHTDCIKLWLMQKNLCPICKTTALPT 917
           +FHT+CIK WLMQKNLCPICK TAL T
Sbjct: 193 DFHTNCIKQWLMQKNLCPICKMTALLT 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519717|ref|XP_003528516.1| PREDICTED: uncharacterized protein LOC100809024 [Glycine max]

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 130/146 (89%)

Query: 772 RLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLAL 831
           RL+SEIRQVL AM RGENLR ED+MLF+PF+YHG+AEMHDRHR+MRLDVDNMSYEELLAL
Sbjct: 570 RLISEIRQVLMAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLAL 629

Query: 832 EERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHN 891
           EERIGDVSTGLSE+ I+K+MK+  YVS  T+S  DLEPCCICQ+E+ DG+++G LDCGH 
Sbjct: 630 EERIGDVSTGLSEDIIIKLMKQRIYVSVMTDSSIDLEPCCICQDEFADGENVGSLDCGHE 689

Query: 892 FHTDCIKLWLMQKNLCPICKTTALPT 917
           FH+ CIK WLMQKNLCPICKTTAL T
Sbjct: 690 FHSGCIKQWLMQKNLCPICKTTALAT 715

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562271|ref|XP_003549395.1| PREDICTED: uncharacterized protein LOC100791026 [Glycine max]

 Score =  259 bits (662), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 282/557 (50%), Gaps = 78/557 (14%)

Query: 425 APQNPNLNAGYAGNNGSGGQGMGIGLGQNP--CNSSGLETEQESLASAASDKVGTSSRSS 482
            PQN NLNA  A      G      + + P    SSG   E  +    +   +  S  ++
Sbjct: 140 VPQNLNLNASLA----DSGTDNSYHVERPPSLIKSSGPLNEHVAPTVGSGPFLLPSGTAN 195

Query: 483 GFMVEENNGNAGSSLGGWGLSCKRKALEGTSAQSCSAGSSSCFPLAENGVSARNDPSSSL 542
           GF+ EE +G  G SL    +SCKRKA+E  +    S G SS +    +G +    P+ + 
Sbjct: 196 GFLGEETDGRPGCSLDTRRVSCKRKAVE-RNVGQSSDGGSSSYSQHTDGSTWNTLPTQAY 254

Query: 543 SLSLPLRDSPTACPLEQSNPRFGVGMRIVEDG----FPPPGITGNSENCLRSFGRRGNPR 598
                 R +PT    +Q N R G+      DG     P   +  +S +  R+F  R +P 
Sbjct: 255 GGISFNRSAPT----DQVNARLGLS---TGDGSSESIPVSNVARSSGSFHRNFRPRTSPS 307

Query: 599 HRQESVPFSLLSRGSS-RHSNIASPHSPAIPLPYSASLGFRSAAAQDANINAPQIQPHPV 657
            +Q SVP + +S G+  R S ++SP SP +   +     F   A    +   PQ QP  +
Sbjct: 308 SQQISVPPTAISSGNVIRSSGVSSP-SPILQRFHPVDNSFDLRAVPPVDTMVPQSQPLVI 366

Query: 658 HVSSFSRNMHHFPWRGASSSRAGSLSISSTSGERGATLREEGNARSIPRNNAEHPMYVSS 717
           HV +  RN   F W G SSS     S S    +R     EE ++RS+PRN  E+PM+V +
Sbjct: 367 HVPALPRNAQSFRWSGGSSSTNNHSSNSVMCADRNNLPNEEASSRSMPRNIIEYPMFVPA 426

Query: 718 AGMRNMVQDPANW-GLVTRSSSGDV-SSARIGSSSSIHP--------LPGPAWIPHPI-- 765
             +RN+V++PA        S  G+V SS+R GS+ +++P         P P   P  +  
Sbjct: 427 TNLRNVVRNPARTSNNANLSIPGNVGSSSRTGSNPAVNPPPASAWVSRPNPQQYPRRLSE 486

Query: 766 ---------------------------PSTHSHRLMSE------------------IRQV 780
                                      P++   R +S                   ++ +
Sbjct: 487 YVRRSLFSPGLEAAGSSSNSYTPFRGPPTSSESRGLSSGVNPFERQGDSEFGIPYSLQSL 546

Query: 781 LTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVST 840
           + A      L  ED M+ +P V+ G+A++HDRHRDMRLDVDNMSYEELLALEERIG+VST
Sbjct: 547 VVAGEGSSRLVSEDVMILDPSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVST 606

Query: 841 GLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLW 900
           GLSEE + K++K++KY S E +S  + EPCC+CQEEY DGDDLG LDCGH++H DCIK W
Sbjct: 607 GLSEEIVSKLLKKKKY-SAEPDSQHEAEPCCVCQEEYKDGDDLGSLDCGHDYHRDCIKQW 665

Query: 901 LMQKNLCPICKTTALPT 917
           LM KNLCPICKTT L T
Sbjct: 666 LMHKNLCPICKTTGLAT 682

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428847|ref|XP_002282377.1| PREDICTED: uncharacterized protein LOC100258840 [Vitis vinifera]

 Score =  258 bits (660), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 129/147 (87%), Gaps = 3/147 (2%)

Query: 771 HRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLA 830
           HRL+SEIRQVLTAM RGE+LR ED+MLF+PF+YHG++E+ DRHRDMRLDVDNMSYEELL 
Sbjct: 591 HRLISEIRQVLTAMRRGESLRAEDYMLFDPFIYHGMSELQDRHRDMRLDVDNMSYEELLD 650

Query: 831 LEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
           LEERIGDV+TGLS+E I+K MKR+KY S  T    ++EPCCICQEEY  GDDLG+LDCGH
Sbjct: 651 LEERIGDVNTGLSDEKILKCMKRQKYSSNPT---PEVEPCCICQEEYAVGDDLGILDCGH 707

Query: 891 NFHTDCIKLWLMQKNLCPICKTTALPT 917
           +FHT+CIK WLMQKNLCPICKTT L T
Sbjct: 708 DFHTNCIKQWLMQKNLCPICKTTGLAT 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555411|ref|XP_002518742.1| protein binding protein, putative [Ricinus communis] gi|223542123|gb|EEF43667.1| protein binding protein, putative [Ricinus communis]

 Score =  258 bits (659), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 110/146 (75%), Positives = 129/146 (88%)

Query: 771 HRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLA 830
           H+L+SEIRQVL AM RGENLR+ED+MLF+PF +H +AE++DRHRDMRLDVDNMSYEELLA
Sbjct: 588 HQLISEIRQVLNAMRRGENLRVEDYMLFDPFTHHSMAEVYDRHRDMRLDVDNMSYEELLA 647

Query: 831 LEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
           LEERIGDV+TGLSE TI+K+MK++KYV    ++P DLEPC ICQEEY DGDDLG LDCGH
Sbjct: 648 LEERIGDVNTGLSEGTILKLMKQQKYVFMIADNPADLEPCSICQEEYVDGDDLGTLDCGH 707

Query: 891 NFHTDCIKLWLMQKNLCPICKTTALP 916
            FHT+CIK WL+ KN+CPICK TALP
Sbjct: 708 VFHTNCIKQWLVLKNICPICKMTALP 733

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821644|emb|CAN68213.1| hypothetical protein VITISV_022802 [Vitis vinifera]

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 129/147 (87%), Gaps = 3/147 (2%)

Query: 771 HRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLA 830
           HRL+SEIRQVLTAM RGE+LR ED+MLF+PF+YHG++E+ DRHRDMRLDVDNMSYEELL 
Sbjct: 410 HRLISEIRQVLTAMRRGESLRAEDYMLFDPFIYHGMSELQDRHRDMRLDVDNMSYEELLD 469

Query: 831 LEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
           LEERIGDV+TGLS+E I+K MKR+KY S  T    ++EPCCICQEEY  GDDLG+LDCGH
Sbjct: 470 LEERIGDVNTGLSDEKILKCMKRQKYSSNPT---PEVEPCCICQEEYAVGDDLGILDCGH 526

Query: 891 NFHTDCIKLWLMQKNLCPICKTTALPT 917
           +FHT+CIK WLMQKNLCPICKTT L T
Sbjct: 527 DFHTNCIKQWLMQKNLCPICKTTGLAT 553

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741257|emb|CBI32388.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (651), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 112/147 (76%), Positives = 129/147 (87%), Gaps = 3/147 (2%)

Query: 771 HRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLA 830
           HRL+SEIRQVLTAM RGE+LR ED+MLF+PF+YHG++E+ DRHRDMRLDVDNMSYEELL 
Sbjct: 16  HRLISEIRQVLTAMRRGESLRAEDYMLFDPFIYHGMSELQDRHRDMRLDVDNMSYEELLD 75

Query: 831 LEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
           LEERIGDV+TGLS+E I+K MKR+KY S  T    ++EPCCICQEEY  GDDLG+LDCGH
Sbjct: 76  LEERIGDVNTGLSDEKILKCMKRQKYSSNPT---PEVEPCCICQEEYAVGDDLGILDCGH 132

Query: 891 NFHTDCIKLWLMQKNLCPICKTTALPT 917
           +FHT+CIK WLMQKNLCPICKTT L T
Sbjct: 133 DFHTNCIKQWLMQKNLCPICKTTGLAT 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	917
TAIR|locus:2124271	666	MBR2 "MED25 BINDING RING-H2 PR	0.160	0.220	0.734	2.6e-89
TAIR|locus:2028225	645	AT1G45180 [Arabidopsis thalian	0.154	0.220	0.622	1.3e-61
TAIR|locus:2160031	691	AT5G42940 [Arabidopsis thalian	0.170	0.225	0.608	2.1e-57
TAIR|locus:2149378	520	AT5G24870 [Arabidopsis thalian	0.153	0.271	0.48	1e-32
TAIR|locus:2125284	497	AT4G31450 [Arabidopsis thalian	0.161	0.297	0.484	3.3e-30
TAIR|locus:2159634	525	AT5G10650 [Arabidopsis thalian	0.157	0.274	0.477	5.4e-30
TAIR|locus:2027804	367	AT1G73760 [Arabidopsis thalian	0.130	0.326	0.483	1.2e-27
TAIR|locus:2086305	486	AT3G15070 [Arabidopsis thalian	0.160	0.302	0.414	3.6e-24
TAIR|locus:2009660	494	AT1G53190 [Arabidopsis thalian	0.159	0.295	0.432	3.6e-24
TAIR|locus:2030933	368	AT1G17970 [Arabidopsis thalian	0.126	0.315	0.445	6.4e-23

TAIR|locus:2124271 MBR2 "MED25 BINDING RING-H2 PROTEIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 2.6e-89, Sum P(3) = 2.6e-89
 Identities = 108/147 (73%), Positives = 125/147 (85%)

Query:   771 HRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLA 830
             +RL+SEIRQVL+AM RGENLR ED+M+F+P +Y G+AEMHDRHRDMRLDVDNMSYEELLA
Sbjct:   520 NRLISEIRQVLSAMRRGENLRFEDYMVFDPLIYQGMAEMHDRHRDMRLDVDNMSYEELLA 579

Query:   831 LEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
             L ERIGDVSTGLSEE I+K+MK+ K+ S+   S  D+EPCC+CQEEY +GDDLG L CGH
Sbjct:   580 LGERIGDVSTGLSEEVILKVMKQHKHTSSAAGSHQDMEPCCVCQEEYAEGDDLGTLGCGH 639

Query:   891 NFHTDCIKLWLMQKNLCPICKTTALPT 917
              FHT C+K WLM KNLCPICKT AL T
Sbjct:   640 EFHTACVKQWLMLKNLCPICKTVALST 666

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2028225 AT1G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 1.3e-61, Sum P(3) = 1.3e-61
 Identities = 89/143 (62%), Positives = 112/143 (78%)

Query:   775 SEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEER 834
             SEIR +L  M R  NLR+ED ML    +  G A++HDR+RDMRLDVDNM+YEELL+LEER
Sbjct:   498 SEIRNILEHMRRAGNLRLEDVMLLNQSIMLGAADIHDRYRDMRLDVDNMTYEELLSLEER 557

Query:   835 IGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHT 894
             IGDV TGL+EETI   +K++KY S+ T S  ++EPCC+CQEEY + +++G L+CGH+FH+
Sbjct:   558 IGDVCTGLNEETISNRLKQQKYKSS-TRSSQEVEPCCVCQEEYKEEEEIGRLECGHDFHS 616

Query:   895 DCIKLWLMQKNLCPICKTTALPT 917
              CIK WL QKNLCPICKTT L T
Sbjct:   617 QCIKEWLKQKNLCPICKTTGLNT 639

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2160031 AT5G42940 [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 2.1e-57, Sum P(3) = 2.1e-57
 Identities = 101/166 (60%), Positives = 118/166 (71%)

Query:   761 IPHPI-----PSTHSHRLM-SEIRQVLTAMHR---GENLRIEDFMLFEPFVYHGLAEMHD 811
             IPHP+      S    RLM S+++ VL  M R     NLR+ED ML    V    A  HD
Sbjct:   520 IPHPLRALAAASRGRSRLMVSQMQNVLDVMRRDANNNNLRLEDVMLLNHSVLFDGATGHD 579

Query:   812 RHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCC 871
             R+RDMRLDVDNMSYEELLALEERIGDV TG++EETI   +K+ KY S  T+SP D EPCC
Sbjct:   580 RYRDMRLDVDNMSYEELLALEERIGDVCTGVNEETISNRLKQRKYKSN-TKSPQDAEPCC 638

Query:   872 ICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT 917
             +CQEEYT+G+D+G L+CGH FH+ CIK WL QKNLCPICKTT L T
Sbjct:   639 VCQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCPICKTTGLNT 684

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2149378 AT5G24870 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 72/150 (48%), Positives = 98/150 (65%)

Query:   774 MSEIRQVLTAMHR---GENLRIEDFMLFEPFVY-HGLAEMHDRHRDMRLDVDNMSYEELL 829
             M+ + +VL A+ R    E L  E   + E  ++ +G++  HD+HRDMRLD+DNMSYEELL
Sbjct:   363 MNGVAEVLLALERIEQDEELTYEQLAVLETNLFLNGMSSFHDQHRDMRLDIDNMSYEELL 422

Query:   830 ALEERIGDVSTGLSEETIMKIMKREKY-VSTETE----SPTDLEPCCICQEEYTDGDDLG 884
             ALEE++G VST LSEE ++K +K   Y  + E++    +  D   C ICQEEY DGD++G
Sbjct:   423 ALEEKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLNKDDDVKCSICQEEYVDGDEVG 482

Query:   885 VLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
              L C H +H  C + WL  KN CPICKT+A
Sbjct:   483 TLPCQHKYHVSCAQQWLRMKNWCPICKTSA 512

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2125284 AT4G31450 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 77/159 (48%), Positives = 98/159 (61%)

Query:   767 STHSHRL--MSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMS 824
             S  S+ L  +SEI   L  + +   L  ED ++ E  +  G    HD+HRDMRLD+DNMS
Sbjct:   334 SFRSYNLDGISEILPELDRIEQDIELNYEDLLIMETGLLLGGLSFHDQHRDMRLDIDNMS 393

Query:   825 YEELLALEERIGDVSTGLSEETIMKIMKREKY------VSTETESPTDLEP---CCICQE 875
             YEELLALEERIG VST L+EE I K +K   Y        + T+SP+D +    C ICQE
Sbjct:   394 YEELLALEERIGTVSTALTEEAISKCLKTSIYQMKPLSYGSITKSPSDNKEDAKCSICQE 453

Query:   876 EYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
             EYT GD++G L C H +H  C++ WL  K+ CPICK TA
Sbjct:   454 EYTIGDEVGRLHCEHTYHVKCVQEWLRIKSWCPICKATA 492

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2159634 AT5G10650 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 5.4e-30, Sum P(2) = 5.4e-30
 Identities = 74/155 (47%), Positives = 99/155 (63%)

Query:   770 SHRLMSEIRQVLTAMHR---GENLRIEDFMLFEPFVYH-GLAEMHDRHRDMRLDVDNMSY 825
             SH  M+ I +VL A+ R    E L  E     E  ++  G+   +D+HRDMRLD+DNMSY
Sbjct:   366 SHYNMNGIAEVLLALERIEHDEELTYEQLASIETNLFSSGMFRFYDQHRDMRLDIDNMSY 425

Query:   826 EELLALEERIGDVSTGLSEETIMKIMKREKYVST-ETESPT-----DLEPCCICQEEYTD 879
             EELLAL +++G VST LSEE + + +K+  Y  T ET S +     D++ C ICQEEY D
Sbjct:   426 EELLALGDKMGTVSTALSEEALSRSLKQSIYQETDETGSISLYKDDDIK-CSICQEEYVD 484

Query:   880 GDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
             GD+LG + C H +H  C++ WL  KN CPICKT+A
Sbjct:   485 GDELGTIPCQHMYHVSCVQQWLRMKNWCPICKTSA 519

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006914 "autophagy" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2027804 AT1G73760 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
 Identities = 59/122 (48%), Positives = 81/122 (66%)

Query:   793 EDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMK 852
             E  M+   FV  G+    D+ RDMRL+VDNM+YE+LL L ERIG V+TGL+E+ I   ++
Sbjct:   244 EMMMMQNGFVMGGVLSSFDQFRDMRLNVDNMTYEQLLELGERIGHVNTGLTEKQIKSCLR 303

Query:   853 REKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
             + K    +T +  D + C ICQ+EY   D++G L CGH FH DC+  WL++KN CP+CKT
Sbjct:   304 KVKPCRQDT-TVADRK-CIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCPVCKT 361

Query:   913 TA 914
              A
Sbjct:   362 MA 363

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2086305 AT3G15070 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 3.6e-24, P = 3.6e-24
 Identities = 68/164 (41%), Positives = 94/164 (57%)

Query:   756 PGPAWIPHPIPSTHSHRLMSEIRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRD 815
             PG  ++P  I     HR +   R    AM   EN        +E   ++      D H+D
Sbjct:   323 PGEDFVPAAILR---HRELPHFR----AMPANENA------FWEVGDFYNAVNYVDHHQD 369

Query:   816 MRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLEP--CC 871
             MRLD+++MSYEELLAL ++IG V TGLS E + +++KR     ++ E    TDLE   C 
Sbjct:   370 MRLDIEDMSYEELLALSDQIGTVKTGLSSEDVKELLKRRTSTRINLEEGPSTDLETDSCT 429

Query:   872 ICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
             ICQE Y + D +  LDC H +H +C+K WL+ KN+CPICK+ AL
Sbjct:   430 ICQENYKNEDKIATLDCMHKYHAECLKKWLVIKNVCPICKSEAL 473

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2009660 AT1G53190 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
 Identities = 71/164 (43%), Positives = 96/164 (58%)

Query:   769 HSHRLMSEIRQVLTA-MHRG--ENLRI--ED---FMLFEPFVYHGLAEMH-DRHRDMRLD 819
             + H    +   V T   HRG    LR+  +D    + F  F+  G    H D HRDMRLD
Sbjct:   325 YQHHQRDDSVPVATLRQHRGGVPRLRVMPDDEVALLEFGDFL-GGSGNNHIDHHRDMRLD 383

Query:   820 VDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPT----DLE--PCC 871
             ++ MSYEELLAL ERIG V+TGL EE +   +K      ++ E ES +    DLE  PC 
Sbjct:   384 IEEMSYEELLALSERIGTVNTGLPEEDVKNHLKTRTCSGINFEKESSSPRTKDLETEPCT 443

Query:   872 ICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
             ICQE + + + +  LDCGH +H +C++ WL+ KN+CPICK+ AL
Sbjct:   444 ICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICKSEAL 487

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2030933 AT1G17970 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 6.4e-23, P = 6.4e-23
 Identities = 53/119 (44%), Positives = 77/119 (64%)

Query:   796 MLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREK 855
             ML   FV   + +  D + ++RLDVD+MSYE+LL L +RIG V+TGL E  I + + + K
Sbjct:   249 MLQNGFVMGRITDSRDNYHELRLDVDSMSYEQLLELGDRIGYVNTGLKESEIHRCLGKIK 308

Query:   856 YVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
                + + +  D + C ICQ+EY   D++G L+CGH+FH  C+K WL +KN CP+CK  A
Sbjct:   309 --PSVSHTLVDRK-CSICQDEYEREDEVGELNCGHSFHVHCVKQWLSRKNACPVCKKAA 364

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	917
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	7e-17
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-12
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	7e-11
smart00184	40	smart00184, RING, Ring finger	2e-10
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	7e-10
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	2e-09
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	2e-07
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-07
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	1e-05
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	1e-05
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	2e-04
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	4e-04
pfam00628	51	pfam00628, PHD, PHD-finger	6e-04

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 74.7 bits (184), Expect = 7e-17
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           C IC +E+  G+++ VL CGH FH +C+  WL   N CP+C+ 
Sbjct: 3   CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRA 45

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 62.5 bits (152), Expect = 1e-12
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTT 913
           C IC EE+ +   + +L CGH F   CI  WL   KN CP+C+T 
Sbjct: 2   CPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 865 TDLEPCCICQEEYTD--------GDD--LGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
            + + C IC+  +          GDD  +   +CGH FH  CI  WL  +N CP+C+
Sbjct: 17  IEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNL-CPIC 910
           C IC EEY    D  +L CGH F   CI+ WL   N  CPIC
Sbjct: 1   CPICLEEYLK--DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 54.8 bits (132), Expect = 7e-10
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           C IC +   D   + +  CGH F  +CI  +L +K+ CPIC+T
Sbjct: 5   CPICLDLLRD--PVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNL-CPIC 910
           C IC EE  D   +  L CGH F + CI  WL   N+ CP+C
Sbjct: 1   CPICLEEPKDPVTI--LPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 868 EPCCICQEEYTDGDDLGVL--DCGHNFHTDCIKLWLMQKNLCPICKTT 913
             C  CQ   T GD+  V+   C H FH  CI  WL  K +CP+ + T
Sbjct: 32  GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQT 79

Length = 88

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.5 bits (128), Expect = 3e-07
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALP 916
           C IC   +   D L VL C H FH  C+  WL+   N CP+C+T   P
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373

Length = 374

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 16/81 (19%)

Query: 848 MKI-MKREKYVSTET-ESPTDLEPCCICQEEYTD--------GDDLGVL--DCGHNFHTD 895
           MK+ +K    V+T T ++P+D + C IC+  +          GDD  ++   C HNFH  
Sbjct: 1   MKVKIKEWNAVATWTWDTPSD-DVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMH 59

Query: 896 CIKLWLMQ---KNLCPICKTT 913
           CI  WL     K LCP+C+ T
Sbjct: 60  CILKWLATETSKGLCPMCRQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 20/92 (21%)

Query: 842 LSEETIMK--IMKREK-Y---------VSTETESPTDL---EPCCICQEEYTDGDD---- 882
             EE +    I K+ K Y         V +E E   +    + C IC E+  D +     
Sbjct: 134 RKEEDMFYAIINKKGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMY 193

Query: 883 LGVL-DCGHNFHTDCIKLWLMQKNLCPICKTT 913
            G+L +C H F  +CI +W  +KN CP+C+T 
Sbjct: 194 FGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225

Length = 238

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (106), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 10/52 (19%)

Query: 870 CCICQEEYTDGDDLGV----------LDCGHNFHTDCIKLWLMQKNLCPICK 911
           C IC +E    D   +          L CGH  H  C+K WL ++  CPIC+
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICR 341

Length = 491

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 866 DLEPCCICQEEYTDGDDLGVLDCGHN-FHTDCIKLWLMQKNLCPICKT 912
           + + C IC E   +   +  L CGH     +C K    +K  CPIC+ 
Sbjct: 1   EDDLCVICLERPRN---VVFLPCGHLCLCEECAKRLRSKKK-CPICRQ 44

Length = 49

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN------LCPICK 911
           C +C +   DG+ L    C   FH  C+   L  +        CP CK
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECK 49

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	917
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.45
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.36
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.11
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.11
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.09
PHA02929	238	N1R/p28-like protein; Provisional	99.08
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.86
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.85
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.82
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.81
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.76
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.74
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.7
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.7
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.66
PHA02926	242	zinc finger-like protein; Provisional	98.62
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.59
PF14634	44	zf-RING_5: zinc-RING finger domain	98.53
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.5
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.48
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.46
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.43
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.35
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.27
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.2
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.11
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.11
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.06
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.06
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.04
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.03
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.99
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.98
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.96
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.77
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.72
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.71
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.69
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.58
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.52
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.5
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.31
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.23
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.2
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.18
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	97.14
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.0
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.86
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.81
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.8
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	96.76
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.43
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.43
KOG2660	331	consensus Locus-specific chromosome binding protei	96.39
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.3
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.27
COG5152	259	Uncharacterized conserved protein, contains RING a	96.27
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.27
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.15
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.03
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	95.73
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.73
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.63
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.47
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.45
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.31
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.24
PHA03096	284	p28-like protein; Provisional	95.24
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.2
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.95
PF04641	260	Rtf2: Rtf2 RING-finger	94.86
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	94.84
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	94.63
PHA02862	156	5L protein; Provisional	94.59
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	94.36
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.09
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	93.94
COG5222	427	Uncharacterized conserved protein, contains RING Z	93.71
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	93.7
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	93.49
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.04
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	93.02
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	92.22
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.04
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	91.0
KOG1609	323	consensus Protein involved in mRNA turnover and st	90.95
KOG3002	299	consensus Zn finger protein [General function pred	90.9
KOG0298	1394	consensus DEAD box-containing helicase-like transc	90.4
KOG1940	276	consensus Zn-finger protein [General function pred	90.21
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	90.19
KOG3053	293	consensus Uncharacterized conserved protein [Funct	88.46
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	88.07
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	87.55
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	87.35
KOG0825	1134	consensus PHD Zn-finger protein [General function	86.82
KOG1829	580	consensus Uncharacterized conserved protein, conta	86.71
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	86.16
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	86.07
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	83.2
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	82.35
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	81.23
KOG3899	381	consensus Uncharacterized conserved protein [Funct	80.8

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=4.3e-14  Score=155.75  Aligned_cols=49  Identities=45%  Similarity=1.145  Sum_probs=45.3

Q ss_pred             CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCcCCCcCC
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN-LCPICKTTALP  916 (917)
Q Consensus       868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rkn-TCPICR~~lLp  916 (917)
                      +.|+||||+|+++|++++|||+|.||..||++||.+.. .||+||+.+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            68999999999999999999999999999999999774 59999998753

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.36  E-value=1.7e-13  Score=108.95  Aligned_cols=44  Identities=50%  Similarity=1.207  Sum_probs=40.6

Q ss_pred             CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcC
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK  911 (917)
Q Consensus       868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR  911 (917)
                      +.|+||+++|..++.++.|+|+|+||.+||.+||+.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            46999999999999999999999999999999999999999997

...

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=3.3e-11  Score=132.09  Aligned_cols=53  Identities=32%  Similarity=0.819  Sum_probs=44.6

Q ss_pred             CCCCCCCCCcccccc-cCCCC---------ceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484          862 ESPTDLEPCCICQEE-YTDGD---------DLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA  914 (917)
Q Consensus       862 ~s~~e~e~C~ICLEe-fe~ge---------~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l  914 (917)
                      +...++..|.||||+ |..+.         +.++|||||+||.+|++.|++++.+||+||.++
T Consensus       282 ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         282 QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             hhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence            345667789999999 44331         347899999999999999999999999999985

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=3.4e-11  Score=129.33  Aligned_cols=50  Identities=40%  Similarity=0.995  Sum_probs=47.0

Q ss_pred             CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCcCC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTALP  916 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-rknTCPICR~~lLp  916 (917)
                      ..+|+|||+.|.+.|++++|||.|.||..||.+|+. -++.||+||.++.|
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            367999999999999999999999999999999998 78999999999876

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.09  E-value=6.6e-11  Score=104.52  Aligned_cols=46  Identities=41%  Similarity=0.912  Sum_probs=37.1

Q ss_pred             CCCCCcccccccCCC----------CceEEeCCCChhcHHHHHHHHhcCCCCcCcC
Q 002484          866 DLEPCCICQEEYTDG----------DDLGVLDCGHNFHTDCIKLWLMQKNLCPICK  911 (917)
Q Consensus       866 e~e~C~ICLEefe~g----------e~VviLPCgHvFH~~CIkqWL~rknTCPICR  911 (917)
                      .++.|+||++.|.+.          ..+...+|+|.||..||.+||+.+.+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            455699999999432          2355568999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.08  E-value=8.9e-11  Score=124.62  Aligned_cols=51  Identities=35%  Similarity=0.922  Sum_probs=42.3

Q ss_pred             CCCCCCcccccccCCCCc----eEE-eCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          865 TDLEPCCICQEEYTDGDD----LGV-LDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge~----Vvi-LPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ..+.+|+||++.+.+.+.    +.+ ++|+|.||..||.+|++.+.+||+||+++.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            456789999999876531    234 479999999999999999999999998764

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.86  E-value=2.1e-09  Score=110.72  Aligned_cols=48  Identities=33%  Similarity=0.673  Sum_probs=40.4

Q ss_pred             CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc----------------CCCCcCcCCCcC
Q 002484          865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ----------------KNLCPICKTTAL  915 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r----------------knTCPICR~~lL  915 (917)
                      .++.+|+||++.++++   ++++|||.||+.||.+|+..                +..||+||..+.
T Consensus        16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            3457899999998776   77899999999999999852                347999999874

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=1.3e-09  Score=117.03  Aligned_cols=51  Identities=31%  Similarity=0.778  Sum_probs=45.3

Q ss_pred             CCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484          863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP  916 (917)
Q Consensus       863 s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lLp  916 (917)
                      ......+|.||||....+   ..+||||+||..||..|+..+..||+||..+-|
T Consensus       235 i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence            344567899999998877   688999999999999999999999999998765

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.4e-09  Score=108.42  Aligned_cols=54  Identities=28%  Similarity=0.530  Sum_probs=44.8

Q ss_pred             CCCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          861 TESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       861 ~~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ....+....|+|||+.|.+.. .+-++|||+||..||+.-|+....||+|++.|.
T Consensus       125 ~~~~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  125 PLRKEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             ccccccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence            344555678999999998763 245799999999999999999999999998764

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.1e-09  Score=112.66  Aligned_cols=50  Identities=32%  Similarity=0.658  Sum_probs=42.5

Q ss_pred             CCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc---CCCCcCcCCCcC
Q 002484          863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ---KNLCPICKTTAL  915 (917)
Q Consensus       863 s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r---knTCPICR~~lL  915 (917)
                      .+....+|.||||.-+++   +++.|||.||+.||.+||..   ++.||+||..+-
T Consensus        43 ~~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            355667899999998887   78889999999999999984   567999998763

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.76  E-value=6.6e-09  Score=80.00  Aligned_cols=44  Identities=45%  Similarity=1.074  Sum_probs=36.7

Q ss_pred             CCcccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCcCCCc
Q 002484          869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTA  914 (917)
Q Consensus       869 ~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r-knTCPICR~~l  914 (917)
                      .|+||++.+.  +.+..++|+|.||..|++.|++. ...||+||+.+
T Consensus         1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999983  33455569999999999999997 77899999864

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.74  E-value=4.8e-09  Score=85.74  Aligned_cols=46  Identities=39%  Similarity=0.783  Sum_probs=39.3

Q ss_pred             CCCCcccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHN-FHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgHv-FH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      +..|.||++...+   +..+||||. ||..|+.+|++.+..||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4679999998654   578899999 999999999999999999999874

...

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=4.7e-09  Score=123.28  Aligned_cols=52  Identities=37%  Similarity=0.871  Sum_probs=45.5

Q ss_pred             CCCCCCCcccccccCCCCc--eEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          864 PTDLEPCCICQEEYTDGDD--LGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~--VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ...++.|+||+|++..+..  .++|+|+|+||..|+++||+++.+||+||..+.
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            3447789999999998655  688999999999999999999999999998543

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.70  E-value=8.2e-09  Score=80.42  Aligned_cols=39  Identities=41%  Similarity=1.020  Sum_probs=33.7

Q ss_pred             CcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCc
Q 002484          870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC  910 (917)
Q Consensus       870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPIC  910 (917)
                      |+||++.+.+  .++.++|||.||+.||.+|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999877  35678999999999999999999999998

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.66  E-value=1.7e-08  Score=91.91  Aligned_cols=49  Identities=39%  Similarity=0.884  Sum_probs=39.3

Q ss_pred             CCCCCcccccccCC--------CC--ceEEeCCCChhcHHHHHHHHhc---CCCCcCcCCCc
Q 002484          866 DLEPCCICQEEYTD--------GD--DLGVLDCGHNFHTDCIKLWLMQ---KNLCPICKTTA  914 (917)
Q Consensus       866 e~e~C~ICLEefe~--------ge--~VviLPCgHvFH~~CIkqWL~r---knTCPICR~~l  914 (917)
                      .++.|.||...|..        ++  .++.-.|+|.||..||.+||..   +..||+||++.
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w   81 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW   81 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence            37789999999872        22  2444589999999999999984   57899999975

>PHA02926 zinc finger-like protein; Provisional

Probab=98.62  E-value=2.2e-08  Score=104.75  Aligned_cols=51  Identities=33%  Similarity=0.787  Sum_probs=39.1

Q ss_pred             CCCCCCCcccccccCCC-----CceEEe-CCCChhcHHHHHHHHhcC------CCCcCcCCCc
Q 002484          864 PTDLEPCCICQEEYTDG-----DDLGVL-DCGHNFHTDCIKLWLMQK------NLCPICKTTA  914 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~g-----e~VviL-PCgHvFH~~CIkqWL~rk------nTCPICR~~l  914 (917)
                      ...+++|.||||..-++     ...++| +|+|.||..||++|.+.+      ..||+||..+
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f  229 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF  229 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence            44567899999986432     123555 799999999999999853      4699999875

>smart00504 Ubox Modified RING finger domain

Probab=98.59  E-value=4.7e-08  Score=82.37  Aligned_cols=45  Identities=22%  Similarity=0.400  Sum_probs=40.9

Q ss_pred             CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ..|+||++.+.++   ++++|||+|++.||.+|++.+.+||+|++++.
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence            4699999999887   77899999999999999999999999998763

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.53  E-value=7.3e-08  Score=77.17  Aligned_cols=44  Identities=34%  Similarity=0.801  Sum_probs=39.0

Q ss_pred             CCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCC
Q 002484          869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT  912 (917)
Q Consensus       869 ~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~  912 (917)
                      .|.||++.|.+.+...+|+|||+||..||+++......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999966667788899999999999999977788999985

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.50  E-value=6.3e-08  Score=77.27  Aligned_cols=38  Identities=34%  Similarity=0.831  Sum_probs=30.6

Q ss_pred             CcccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCc
Q 002484          870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK----NLCPIC  910 (917)
Q Consensus       870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rk----nTCPIC  910 (917)
                      |+||++.|+++   +.|+|||.||+.||.+|++..    ..||+|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999998   899999999999999999853    369998

>smart00184 RING Ring finger

Probab=98.48  E-value=1.5e-07  Score=69.96  Aligned_cols=38  Identities=55%  Similarity=1.193  Sum_probs=33.0

Q ss_pred             CcccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCc
Q 002484          870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-QKNLCPIC  910 (917)
Q Consensus       870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-rknTCPIC  910 (917)
                      |.||++..   .....++|+|.||..||+.|++ .+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999983   3457889999999999999998 66779998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.46  E-value=9.7e-08  Score=108.20  Aligned_cols=49  Identities=24%  Similarity=0.608  Sum_probs=42.7

Q ss_pred             CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      .+....|.||++.|..+   ++++|+|.||..||..||..+..||+||..+.
T Consensus        23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~   71 (397)
T TIGR00599        23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ   71 (397)
T ss_pred             cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence            34556899999999877   57899999999999999999889999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.43  E-value=9.9e-08  Score=74.46  Aligned_cols=39  Identities=44%  Similarity=1.073  Sum_probs=34.2

Q ss_pred             CcccccccCCCCceEEeCCCChhcHHHHHHHHh--cCCCCcCc
Q 002484          870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM--QKNLCPIC  910 (917)
Q Consensus       870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~--rknTCPIC  910 (917)
                      |.||++.+.+..  .+++|+|.||.+||++|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988772  4789999999999999999  56679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.35  E-value=3.4e-07  Score=82.14  Aligned_cols=42  Identities=43%  Similarity=0.803  Sum_probs=32.3

Q ss_pred             cccccCCCCceEE--eCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484          873 CQEEYTDGDDLGV--LDCGHNFHTDCIKLWLMQKNLCPICKTTA  914 (917)
Q Consensus       873 CLEefe~ge~Vvi--LPCgHvFH~~CIkqWL~rknTCPICR~~l  914 (917)
                      |+-....+++..+  -.|.|.||..||.+||..++.||+||++.
T Consensus        37 Cq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w   80 (88)
T COG5194          37 CQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW   80 (88)
T ss_pred             cccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence            3333334444433  37999999999999999999999999875

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=3.9e-07  Score=97.43  Aligned_cols=49  Identities=31%  Similarity=0.748  Sum_probs=43.1

Q ss_pred             CCCCCCcccccccCCCCceEEeCCCChhcHHHHHH-HHhcCCC-CcCcCCCcCC
Q 002484          865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKL-WLMQKNL-CPICKTTALP  916 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkq-WL~rknT-CPICR~~lLp  916 (917)
                      ..+..|.||++.....   ..++|||+||..||.. |-+++.. ||+||+.+.|
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence            5677899999998776   7889999999999999 9888776 9999998765

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=5.6e-07  Score=102.28  Aligned_cols=53  Identities=28%  Similarity=0.697  Sum_probs=41.5

Q ss_pred             CCCCCCCcccccccCCCC---c-----------eEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCcCC
Q 002484          864 PTDLEPCCICQEEYTDGD---D-----------LGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTALP  916 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge---~-----------VviLPCgHvFH~~CIkqWL~-rknTCPICR~~lLp  916 (917)
                      ......|+|||.++..-.   .           ...+||.|+||..|+++|+. .|-.||+||.++.|
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            345568999999876211   1           12459999999999999999 66699999999876

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=6.6e-07  Score=95.72  Aligned_cols=51  Identities=29%  Similarity=0.690  Sum_probs=42.3

Q ss_pred             CCCCCCCcccccccCCCC-------ceEEeCCCChhcHHHHHHHHh--cCCCCcCcCCCc
Q 002484          864 PTDLEPCCICQEEYTDGD-------DLGVLDCGHNFHTDCIKLWLM--QKNLCPICKTTA  914 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge-------~VviLPCgHvFH~~CIkqWL~--rknTCPICR~~l  914 (917)
                      ..++..|+||-..+...+       ++.+|.|+|+||..||+-|..  +|.+||.||+.+
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV  280 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV  280 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence            345678999988876554       567899999999999999975  688999999765

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=1.3e-06  Score=100.28  Aligned_cols=47  Identities=32%  Similarity=0.556  Sum_probs=39.0

Q ss_pred             CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcC-----CCCcCcCCCcCC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK-----NLCPICKTTALP  916 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rk-----nTCPICR~~lLp  916 (917)
                      +..|+||+++...+   ..+.|||+||..||.+++...     ..||+|+..|.+
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            56799999998776   566799999999999988643     479999987754

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.1e-06  Score=78.30  Aligned_cols=50  Identities=38%  Similarity=0.877  Sum_probs=38.0

Q ss_pred             CCCCCCcccccccCC--------CCceEEe--CCCChhcHHHHHHHHhc---CCCCcCcCCCc
Q 002484          865 TDLEPCCICQEEYTD--------GDDLGVL--DCGHNFHTDCIKLWLMQ---KNLCPICKTTA  914 (917)
Q Consensus       865 ~e~e~C~ICLEefe~--------ge~VviL--PCgHvFH~~CIkqWL~r---knTCPICR~~l  914 (917)
                      ..++.|.||.-.|..        +|+.-++  .|.|.||..||.+||..   +..||+||++.
T Consensus        18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            345589999998862        3332222  69999999999999974   45799999875

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.06  E-value=1.4e-06  Score=95.67  Aligned_cols=47  Identities=36%  Similarity=0.692  Sum_probs=42.4

Q ss_pred             CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ....|-||.|.|..+   .++||+|.||.-||+.+|..+..||.|+.++.
T Consensus        22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~   68 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT   68 (442)
T ss_pred             HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence            345699999999988   78899999999999999999999999998764

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.04  E-value=2.1e-06  Score=75.79  Aligned_cols=46  Identities=26%  Similarity=0.380  Sum_probs=37.4

Q ss_pred             CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCcCCCcC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTAL  915 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r-knTCPICR~~lL  915 (917)
                      ...|+||.+-+.++   ++++|||.|.+.||.+||+. ..+||+|++.+.
T Consensus         4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~   50 (73)
T PF04564_consen    4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS   50 (73)
T ss_dssp             GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred             ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence            45799999999998   88999999999999999998 889999988764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.03  E-value=5e-06  Score=68.66  Aligned_cols=42  Identities=33%  Similarity=0.819  Sum_probs=33.2

Q ss_pred             CCcccccccCCCCceEEeCCC-----ChhcHHHHHHHHhc--CCCCcCcC
Q 002484          869 PCCICQEEYTDGDDLGVLDCG-----HNFHTDCIKLWLMQ--KNLCPICK  911 (917)
Q Consensus       869 ~C~ICLEefe~ge~VviLPCg-----HvFH~~CIkqWL~r--knTCPICR  911 (917)
                      .|.||++ +.+++...++||.     |+||..|+++|+..  +.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4999999 3444455578985     89999999999975  45899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.99  E-value=4.1e-06  Score=67.54  Aligned_cols=38  Identities=37%  Similarity=0.859  Sum_probs=23.0

Q ss_pred             CcccccccCCCCc-eEEeCCCChhcHHHHHHHHhcC----CCCc
Q 002484          870 CCICQEEYTDGDD-LGVLDCGHNFHTDCIKLWLMQK----NLCP  908 (917)
Q Consensus       870 C~ICLEefe~ge~-VviLPCgHvFH~~CIkqWL~rk----nTCP  908 (917)
                      |+||.| |...+. -++|+|||+|+++||++|++..    -.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 766443 4778999999999999999843    3576

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=2.6e-06  Score=87.36  Aligned_cols=45  Identities=31%  Similarity=0.703  Sum_probs=40.0

Q ss_pred             CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcC
Q 002484          864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK  911 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR  911 (917)
                      ..+...|.||++.|..+   ++|+|+|.||..||..++...-.||.||
T Consensus        10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence            34566799999999998   7889999999999999998666899999

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.96  E-value=3.6e-06  Score=90.92  Aligned_cols=46  Identities=28%  Similarity=0.693  Sum_probs=41.2

Q ss_pred             CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA  914 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l  914 (917)
                      ....|-||-+.|..+   ..++|||.||.-||+..|..+..||+||.+.
T Consensus        24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~   69 (391)
T COG5432          24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDP   69 (391)
T ss_pred             hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccH
Confidence            345699999999888   6789999999999999999999999999753

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.77  E-value=5.8e-06  Score=99.43  Aligned_cols=53  Identities=26%  Similarity=0.674  Sum_probs=40.0

Q ss_pred             CCCCCCCCcccccccCCCC----ceEEeCCCChhcHHHHHHHHhc--CCCCcCcCCCcC
Q 002484          863 SPTDLEPCCICQEEYTDGD----DLGVLDCGHNFHTDCIKLWLMQ--KNLCPICKTTAL  915 (917)
Q Consensus       863 s~~e~e~C~ICLEefe~ge----~VviLPCgHvFH~~CIkqWL~r--knTCPICR~~lL  915 (917)
                      .-.+.++|+||+..+..-|    ..++-.|+|.||..|+.+|++.  +.+||+||.++.
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3456788999988765211    1134469999999999999984  678999998764

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.8e-05  Score=74.36  Aligned_cols=52  Identities=29%  Similarity=0.713  Sum_probs=38.5

Q ss_pred             CCCCCCCCcccccccC------------CCCceEE-e-CCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484          863 SPTDLEPCCICQEEYT------------DGDDLGV-L-DCGHNFHTDCIKLWLMQKNLCPICKTTA  914 (917)
Q Consensus       863 s~~e~e~C~ICLEefe------------~ge~Vvi-L-PCgHvFH~~CIkqWL~rknTCPICR~~l  914 (917)
                      -+...+.|+||...+-            ..++.++ . .|.|.||..||.+||+.++.||+|.++-
T Consensus        42 WDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   42 WDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             eeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            4455677888865442            1223333 2 7999999999999999999999998763

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.71  E-value=8.3e-06  Score=71.93  Aligned_cols=48  Identities=27%  Similarity=0.736  Sum_probs=23.0

Q ss_pred             CCCCcccccccCCCCce---EEe--CCCChhcHHHHHHHHhc----C-------CCCcCcCCCc
Q 002484          867 LEPCCICQEEYTDGDDL---GVL--DCGHNFHTDCIKLWLMQ----K-------NLCPICKTTA  914 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~V---viL--PCgHvFH~~CIkqWL~r----k-------nTCPICR~~l  914 (917)
                      +..|.||++.+.+.+++   +.-  .|++.||..||.+||..    +       ..||.|+++|
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i   65 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI   65 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence            35799999987633322   222  69999999999999972    1       1499999876

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=1.9e-05  Score=87.90  Aligned_cols=49  Identities=35%  Similarity=0.636  Sum_probs=42.3

Q ss_pred             CCCCCCcccccccCCCCceEEeCCCC-hhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484          865 TDLEPCCICQEEYTDGDDLGVLDCGH-NFHTDCIKLWLMQKNLCPICKTTALP  916 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge~VviLPCgH-vFH~~CIkqWL~rknTCPICR~~lLp  916 (917)
                      +..++|.|||.+-++.   .+|||.| -.|..|.+..--+.+.|||||+++..
T Consensus       288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            4467899999997665   8999999 58999999988889999999998754

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.58  E-value=1.2e-05  Score=95.51  Aligned_cols=52  Identities=17%  Similarity=0.339  Sum_probs=45.3

Q ss_pred             CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484          865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP  916 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lLp  916 (917)
                      .....|+||+..+.+.......+|+|+||..||..|-+...+||+||..+..
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            3456799999999888766677999999999999999999999999988753

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.52  E-value=3.2e-05  Score=84.19  Aligned_cols=54  Identities=24%  Similarity=0.640  Sum_probs=44.1

Q ss_pred             CCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh-----------------------cCCCCcCcCCCcC
Q 002484          862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-----------------------QKNLCPICKTTAL  915 (917)
Q Consensus       862 ~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-----------------------rknTCPICR~~lL  915 (917)
                      +..-....|.|||-.|.+++...+++|-|+||..|+.++|.                       .+..||+||..|.
T Consensus       110 ~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  110 ENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             cCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            33445567999999999999999999999999999988772                       1236999998764

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=4.6e-05  Score=85.42  Aligned_cols=50  Identities=32%  Similarity=0.903  Sum_probs=39.1

Q ss_pred             CCCCCCcccccccCCCC----ceEEe-CCCChhcHHHHHHHHh--c-----CCCCcCcCCCc
Q 002484          865 TDLEPCCICQEEYTDGD----DLGVL-DCGHNFHTDCIKLWLM--Q-----KNLCPICKTTA  914 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge----~VviL-PCgHvFH~~CIkqWL~--r-----knTCPICR~~l  914 (917)
                      ..++.|.||||...+..    ..++| +|.|.||..||.+|-.  +     .+.||+||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            55678999999987653    13455 5999999999999983  4     46899999753

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.00014  Score=87.41  Aligned_cols=47  Identities=26%  Similarity=0.730  Sum_probs=38.9

Q ss_pred             CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCcCC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTALP  916 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-rknTCPICR~~lLp  916 (917)
                      ...|+.|-..+++.   +++.|+|+||..||..-+. +...||.|-+.+-+
T Consensus       643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            45699999766554   7779999999999999997 67789999887643

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=7.6e-05  Score=63.11  Aligned_cols=46  Identities=28%  Similarity=0.590  Sum_probs=36.3

Q ss_pred             CCCCcccccccCCCCceEEeCCCC-hhcHHHHHHHHh-cCCCCcCcCCCcC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGH-NFHTDCIKLWLM-QKNLCPICKTTAL  915 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgH-vFH~~CIkqWL~-rknTCPICR~~lL  915 (917)
                      .++|.||+|.-.+.   ++..||| -.|++|-.+-++ .+..||+||+++.
T Consensus         7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            37899999986554   4558999 579999766555 7889999998763

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.20  E-value=0.00012  Score=82.24  Aligned_cols=46  Identities=33%  Similarity=0.809  Sum_probs=38.2

Q ss_pred             CCCcccccccCCCCceEEeCCCChhcHHHHHHHHh--cCCCCcCcCCCcCC
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM--QKNLCPICKTTALP  916 (917)
Q Consensus       868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~--rknTCPICR~~lLp  916 (917)
                      +.|.||-|.   .++|++-||||..|..|+..|-.  ...+||.||.+|.-
T Consensus       370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            469999886   34567889999999999999985  35799999998753

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=5e-05  Score=84.32  Aligned_cols=48  Identities=29%  Similarity=0.538  Sum_probs=39.1

Q ss_pred             CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCcCCCcC
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTAL  915 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r-knTCPICR~~lL  915 (917)
                      .+..|.|||+-++..  +.+..|.|.||.+||.+-|+. .+.||.||+.+.
T Consensus        42 ~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~   90 (381)
T KOG0311|consen   42 IQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV   90 (381)
T ss_pred             hhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence            345699999998765  334469999999999999985 678999998764

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=97.14  E-value=0.00022  Score=88.57  Aligned_cols=52  Identities=33%  Similarity=0.604  Sum_probs=42.6

Q ss_pred             CCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCC----------CCcCcCCCc
Q 002484          863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN----------LCPICKTTA  914 (917)
Q Consensus       863 s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rkn----------TCPICR~~l  914 (917)
                      ..+.++.|.||+-+--.......|.|+|+||..|.+.-|+++-          .||+|+.+|
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence            3456778999988876666778999999999999998777542          699999876

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.00  E-value=0.00016  Score=63.13  Aligned_cols=44  Identities=30%  Similarity=0.677  Sum_probs=23.1

Q ss_pred             CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ..|.+|.+-++++  +....|.|+||..||.+-+..  .||+|+.++-
T Consensus         8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw   51 (65)
T PF14835_consen    8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAW   51 (65)
T ss_dssp             TS-SSS-S--SS---B---SSS--B-TTTGGGGTTT--B-SSS--B-S
T ss_pred             cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcCC--CCCCcCChHH
Confidence            4599999998877  233489999999999886553  4999998763

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.00076  Score=75.02  Aligned_cols=51  Identities=27%  Similarity=0.475  Sum_probs=42.5

Q ss_pred             CCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       862 ~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      -...++..|+||+..--..   +..||+|.-|++||.+.|+..+.|=.||+++.
T Consensus       417 lp~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  417 LPDSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CCCcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            3446788999998764333   66799999999999999999999999998764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.81  E-value=0.00059  Score=77.92  Aligned_cols=50  Identities=28%  Similarity=0.756  Sum_probs=38.6

Q ss_pred             CCCCCCCcccccccCCCCc-eEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          864 PTDLEPCCICQEEYTDGDD-LGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~-VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ..+..+|+||||.+..... +....|.|.||-.|+.+|..  .+||+||....
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence            3456689999999876532 34457999999999999953  57999997544

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.00056  Score=78.25  Aligned_cols=48  Identities=29%  Similarity=0.735  Sum_probs=42.8

Q ss_pred             CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ..+..|+||+.-+..+   +.+||||.||..||.+-|.++..||.||.++.
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence            4567899999998887   77899999999999998888999999998875

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.00043  Score=75.47  Aligned_cols=42  Identities=38%  Similarity=0.748  Sum_probs=33.9

Q ss_pred             CCCCcccccccCCCCceEEeCCCC-hhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGH-NFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgH-vFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ...|.|||+.-.+   .+.|+||| +-|.+|-+..    +.|||||+.++
T Consensus       300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcc---eEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence            6789999998554   48899999 7799997663    48999998654

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.43  E-value=0.0015  Score=55.88  Aligned_cols=43  Identities=26%  Similarity=0.580  Sum_probs=29.0

Q ss_pred             CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc--CCCCcC
Q 002484          865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ--KNLCPI  909 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r--knTCPI  909 (917)
                      .-...|+|.+..|+++  ++...|+|+|-++.|.+||+.  ...||+
T Consensus         9 ~~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            3446799999999876  555689999999999999943  456999

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.43  E-value=0.0013  Score=75.20  Aligned_cols=49  Identities=27%  Similarity=0.569  Sum_probs=42.6

Q ss_pred             CCCCCCCcccccccCCCCceEE-eCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          864 PTDLEPCCICQEEYTDGDDLGV-LDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~Vvi-LPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      .+++..|+||+..+.++   .. +.|||.||..||.+|+..+..||.|+..+.
T Consensus        18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~   67 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT   67 (391)
T ss_pred             CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccc
Confidence            45567899999999888   34 589999999999999999999999988764

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.39  E-value=0.00082  Score=74.48  Aligned_cols=49  Identities=24%  Similarity=0.609  Sum_probs=40.7

Q ss_pred             CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484          864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA  914 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l  914 (917)
                      ......|.+|-..|.+..  .+..|-|.||+.||.+.|...+.||+|...+
T Consensus        12 ~n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~i   60 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVI   60 (331)
T ss_pred             cccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence            345567999999888763  3457999999999999999999999997644

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.0032  Score=68.47  Aligned_cols=52  Identities=27%  Similarity=0.488  Sum_probs=41.0

Q ss_pred             CCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh--cCCCCcCcCCCcCC
Q 002484          863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM--QKNLCPICKTTALP  916 (917)
Q Consensus       863 s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~--rknTCPICR~~lLp  916 (917)
                      ....+.+|++|.+.-..+  ....+|+|+||+.||..-+.  ..-+||.|-.++.+
T Consensus       235 ~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP  288 (298)
T ss_pred             cccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence            445677899999987666  35568999999999998766  34689999887653

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.0026  Score=72.29  Aligned_cols=47  Identities=34%  Similarity=0.609  Sum_probs=38.5

Q ss_pred             CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc--------CCCCcCcCCC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ--------KNLCPICKTT  913 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r--------knTCPICR~~  913 (917)
                      ...|+||+++..-.+.++.|||+|+||+.|++.++..        .-.||-|+-.
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            3469999999887788889999999999999999862        2358877643

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.27  E-value=0.0016  Score=67.90  Aligned_cols=43  Identities=28%  Similarity=0.669  Sum_probs=38.8

Q ss_pred             CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCC
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTT  913 (917)
Q Consensus       868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~  913 (917)
                      ..|.||.++|+.+   +++.|||.||..|.-+-++....|-+|-+.
T Consensus       197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            4799999999988   788999999999999988888999999654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.27  E-value=0.0015  Score=73.47  Aligned_cols=46  Identities=30%  Similarity=0.647  Sum_probs=38.0

Q ss_pred             CCCCcccccccCCCC-ceEEeCCCChhcHHHHHHHHhcC--CCCcCcCC
Q 002484          867 LEPCCICQEEYTDGD-DLGVLDCGHNFHTDCIKLWLMQK--NLCPICKT  912 (917)
Q Consensus       867 ~e~C~ICLEefe~ge-~VviLPCgHvFH~~CIkqWL~rk--nTCPICR~  912 (917)
                      +.-|..|-|.|...+ .+..|||.|+||..|+...|.++  .+||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            345999999887544 57788999999999999999764  47999983

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.15  E-value=0.0023  Score=74.27  Aligned_cols=50  Identities=24%  Similarity=0.549  Sum_probs=39.1

Q ss_pred             CCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh-----cCCCCcCcCCCc
Q 002484          862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-----QKNLCPICKTTA  914 (917)
Q Consensus       862 ~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-----rknTCPICR~~l  914 (917)
                      +...+...|.+|-+.-++.   ....|.|+||+-||++++.     ..-+||+|-..+
T Consensus       531 ~enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  531 DENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             ccccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence            3345566899999886655   6778999999999999986     346899996544

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.0016  Score=66.04  Aligned_cols=34  Identities=29%  Similarity=0.570  Sum_probs=29.3

Q ss_pred             CCCCCCCCCCcccccccCCCCceEEeCCCChhcH
Q 002484          861 TESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHT  894 (917)
Q Consensus       861 ~~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~  894 (917)
                      +....+.-+|.||||+++.++.+.+|||-++||+
T Consensus       171 DVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  171 DVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             chhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            3344556689999999999999999999999996

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.0095  Score=63.25  Aligned_cols=49  Identities=29%  Similarity=0.639  Sum_probs=40.5

Q ss_pred             CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc--------CCCCcCcCCCcCC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ--------KNLCPICKTTALP  916 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r--------knTCPICR~~lLp  916 (917)
                      ...|..|--.+..+|. +.|-|-|+||.+|+.+|-..        ...||.|.++|.|
T Consensus        50 ~pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             CCCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            3469999998888854 47789999999999999763        2369999999876

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.0033  Score=68.91  Aligned_cols=45  Identities=24%  Similarity=0.510  Sum_probs=40.4

Q ss_pred             CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA  914 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l  914 (917)
                      .+.|-||.+.|..+   +++.|+|.||..|..+-++....|.+|-+..
T Consensus       241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence            34699999999998   7889999999999999999989999997754

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.63  E-value=0.0085  Score=64.37  Aligned_cols=50  Identities=16%  Similarity=0.334  Sum_probs=44.7

Q ss_pred             CCCCCcccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          866 DLEPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~VviL-PCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ....|+||.+.+...-.+.+| +|||+|+++|+++.+.....||+|-+++.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk  270 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK  270 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence            456799999999998888888 89999999999999999999999987753

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.47  E-value=0.014  Score=59.34  Aligned_cols=48  Identities=25%  Similarity=0.604  Sum_probs=35.6

Q ss_pred             CCCCCCCCcccccccCCCCceEEeCCCC-----hhcHHHHHHHHhc--CCCCcCcCCCc
Q 002484          863 SPTDLEPCCICQEEYTDGDDLGVLDCGH-----NFHTDCIKLWLMQ--KNLCPICKTTA  914 (917)
Q Consensus       863 s~~e~e~C~ICLEefe~ge~VviLPCgH-----vFH~~CIkqWL~r--knTCPICR~~l  914 (917)
                      ....+..|-||.++...  .  .-||..     .-|..|+.+|+..  ...|++|+++.
T Consensus         4 ~s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y   58 (162)
T PHA02825          4 VSLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY   58 (162)
T ss_pred             cCCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence            34556789999988542  1  247654     6699999999985  45799998864

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.45  E-value=0.0083  Score=59.48  Aligned_cols=37  Identities=27%  Similarity=0.548  Sum_probs=30.3

Q ss_pred             CCCCcccccccCCCCceEEeCCC------ChhcHHHHHHHHhc
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCG------HNFHTDCIKLWLMQ  903 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCg------HvFH~~CIkqWL~r  903 (917)
                      ..+|.||++.+...+-++.++|+      |.||.+|+++|-..
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence            34699999999985567777886      89999999999443

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.31  E-value=0.014  Score=71.21  Aligned_cols=42  Identities=24%  Similarity=0.729  Sum_probs=34.3

Q ss_pred             CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCC
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTT  913 (917)
Q Consensus       867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~  913 (917)
                      ...|.+|--.+..+  ++-..|||.||.+|+.   .....||.|+.+
T Consensus       840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence            46799998887766  4566899999999999   556689999864

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.24  E-value=0.014  Score=65.21  Aligned_cols=53  Identities=25%  Similarity=0.559  Sum_probs=42.2

Q ss_pred             ccCCCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHH--HhcCCCCcCcCCCc
Q 002484          859 TETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLW--LMQKNLCPICKTTA  914 (917)
Q Consensus       859 ~e~~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqW--L~rknTCPICR~~l  914 (917)
                      ..++.+++...|.||-+.+.-   +.++||+|..|-.|..+.  |-.++.||+||++-
T Consensus        53 SaddtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          53 SADDTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            345667778899999988654   367899999999998654  56889999999863

>PHA03096 p28-like protein; Provisional

Probab=95.24  E-value=0.0097  Score=65.71  Aligned_cols=45  Identities=31%  Similarity=0.653  Sum_probs=33.4

Q ss_pred             CCCcccccccCCCC----ceEEe-CCCChhcHHHHHHHHhc---CCCCcCcCC
Q 002484          868 EPCCICQEEYTDGD----DLGVL-DCGHNFHTDCIKLWLMQ---KNLCPICKT  912 (917)
Q Consensus       868 e~C~ICLEefe~ge----~VviL-PCgHvFH~~CIkqWL~r---knTCPICR~  912 (917)
                      ..|.||||......    .-++| .|.|.||..||+.|-..   +.+||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            67999999876532    34566 59999999999999874   345555543

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.20  E-value=0.0067  Score=55.94  Aligned_cols=33  Identities=33%  Similarity=0.764  Sum_probs=27.8

Q ss_pred             CCCCCCcccccccCCCCceEEeCCCChhcHHHHH
Q 002484          865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIK  898 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIk  898 (917)
                      .+...|.||-..+.. ....+.||||+||..|++
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            445679999999987 467778999999999986

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.01  Score=66.74  Aligned_cols=43  Identities=23%  Similarity=0.600  Sum_probs=31.5

Q ss_pred             CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA  914 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l  914 (917)
                      -.+.|.||+++.++.   +-+||||.-|  |+.--... ..||+||+.|
T Consensus       304 ~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs~~l-~~CPvCR~rI  346 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCSKHL-PQCPVCRQRI  346 (355)
T ss_pred             CCCceEEecCCccce---eeecCCcEEE--chHHHhhC-CCCchhHHHH
Confidence            345799999997764   7889999866  65554332 3499999865

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.86  E-value=0.026  Score=61.29  Aligned_cols=51  Identities=20%  Similarity=0.427  Sum_probs=40.6

Q ss_pred             CCCCCCCcccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          864 PTDLEPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~VviL-PCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ......|+|+..+|......+.| +|||+|...||++-- ....||+|-.++.
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence            45567899999999665555555 999999999999973 3567999988764

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.84  E-value=0.01  Score=72.86  Aligned_cols=37  Identities=27%  Similarity=0.555  Sum_probs=29.6

Q ss_pred             CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHH
Q 002484          864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWL  901 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL  901 (917)
                      .+..+.|.||...+-.. ...+.+|||.||++||.+-.
T Consensus       814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            45567899999887655 45577999999999998765

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=94.63  E-value=0.017  Score=47.56  Aligned_cols=40  Identities=28%  Similarity=0.747  Sum_probs=27.6

Q ss_pred             CcccccccCCCCceEEeCCCC-----hhcHHHHHHHHh--cCCCCcCc
Q 002484          870 CCICQEEYTDGDDLGVLDCGH-----NFHTDCIKLWLM--QKNLCPIC  910 (917)
Q Consensus       870 C~ICLEefe~ge~VviLPCgH-----vFH~~CIkqWL~--rknTCPIC  910 (917)
                      |-||+++..+.+ ..+.||.-     +.|..|+.+|+.  .+..|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789999977665 33557653     679999999998  45679998

>PHA02862 5L protein; Provisional

Probab=94.59  E-value=0.024  Score=56.84  Aligned_cols=47  Identities=28%  Similarity=0.740  Sum_probs=31.5

Q ss_pred             CCCcccccccCCCCce-EEeCCCChhcHHHHHHHHh--cCCCCcCcCCCc
Q 002484          868 EPCCICQEEYTDGDDL-GVLDCGHNFHTDCIKLWLM--QKNLCPICKTTA  914 (917)
Q Consensus       868 e~C~ICLEefe~ge~V-viLPCgHvFH~~CIkqWL~--rknTCPICR~~l  914 (917)
                      +.|-||.++.++.... ...---.+-|.+|+.+|+.  ++..|++||.+.
T Consensus         3 diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862          3 DICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             CEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            5799999985433000 0000014789999999998  567899999864

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=94.36  E-value=0.028  Score=68.81  Aligned_cols=46  Identities=33%  Similarity=0.693  Sum_probs=34.9

Q ss_pred             CCCCCcccccccCCCCceEE-eCCCChhcHHHHHHHHhcC-------CCCcCcC
Q 002484          866 DLEPCCICQEEYTDGDDLGV-LDCGHNFHTDCIKLWLMQK-------NLCPICK  911 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~Vvi-LPCgHvFH~~CIkqWL~rk-------nTCPICR  911 (917)
                      ...+|.||++.+.....+-- ..|-|+||..||++|-+..       -.||.|.
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq  243 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ  243 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence            34569999999987764422 2488999999999998631       2599997

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.09  E-value=0.032  Score=46.46  Aligned_cols=44  Identities=27%  Similarity=0.641  Sum_probs=22.5

Q ss_pred             CcccccccCCCCceEEe--CCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484          870 CCICQEEYTDGDDLGVL--DCGHNFHTDCIKLWLM-QKNLCPICKTTA  914 (917)
Q Consensus       870 C~ICLEefe~ge~VviL--PCgHvFH~~CIkqWL~-rknTCPICR~~l  914 (917)
                      |++|.+++...+ ...+  +|++..|+.|..+-++ ....||-||++.
T Consensus         1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999994433 2334  6899999999888886 578899999864

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=0.0036  Score=70.67  Aligned_cols=50  Identities=26%  Similarity=0.576  Sum_probs=44.1

Q ss_pred             CCCCCcccccccCCC-CceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          866 DLEPCCICQEEYTDG-DDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       866 e~e~C~ICLEefe~g-e~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      -...|.||.+.|+.. +++..+-|||.+|.+||.+||..+..||.|+.++.
T Consensus       195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~  245 (465)
T KOG0827|consen  195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP  245 (465)
T ss_pred             HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence            346799999999876 67778899999999999999999999999998763

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.71  E-value=0.038  Score=60.88  Aligned_cols=42  Identities=29%  Similarity=0.638  Sum_probs=33.5

Q ss_pred             CCCcccccccCCCCceEEeC-CCChhcHHHHHHHHh-cCCCCcCcCC
Q 002484          868 EPCCICQEEYTDGDDLGVLD-CGHNFHTDCIKLWLM-QKNLCPICKT  912 (917)
Q Consensus       868 e~C~ICLEefe~ge~VviLP-CgHvFH~~CIkqWL~-rknTCPICR~  912 (917)
                      ..|+.|-.-+...   ..++ |+|.||..||..-|. ....||.|.+
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            6799998887766   3444 899999999998776 5678999944

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=0.05  Score=60.71  Aligned_cols=49  Identities=24%  Similarity=0.468  Sum_probs=39.2

Q ss_pred             CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484          864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA  914 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l  914 (917)
                      ..+...|+||+.....+.  ++.--|-+||+.||.+.+...+.||+--.++
T Consensus       297 ~~~~~~CpvClk~r~Npt--vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  297 PPDREVCPVCLKKRQNPT--VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CCccccChhHHhccCCCc--eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            345678999999987762  3334699999999999999999999976554

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=93.49  E-value=0.03  Score=62.01  Aligned_cols=42  Identities=21%  Similarity=0.559  Sum_probs=28.8

Q ss_pred             CcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      |.-|--.+..-  -+.+||+|+||++|...  ...+.||.|-..+.
T Consensus        93 Cd~Cd~PI~IY--GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   93 CDRCDFPIAIY--GRMIPCKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             ecccCCcceee--ecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence            55564444332  13459999999999764  45779999976654

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.04  E-value=0.041  Score=67.27  Aligned_cols=43  Identities=33%  Similarity=0.817  Sum_probs=35.2

Q ss_pred             CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc--CCCCcCcCCCc
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ--KNLCPICKTTA  914 (917)
Q Consensus       868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r--knTCPICR~~l  914 (917)
                      ..|.||++    .+...+..|+|.||..|+.+-+..  ...||+||..+
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence            67999999    345678899999999999998874  33599998643

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=93.02  E-value=0.14  Score=58.46  Aligned_cols=52  Identities=25%  Similarity=0.576  Sum_probs=32.8

Q ss_pred             CCCCCCCCcccccccCCCCc-------------------eEEeCCCChhcHHHHHHHHhc-------------CCCCcCc
Q 002484          863 SPTDLEPCCICQEEYTDGDD-------------------LGVLDCGHNFHTDCIKLWLMQ-------------KNLCPIC  910 (917)
Q Consensus       863 s~~e~e~C~ICLEefe~ge~-------------------VviLPCgHvFH~~CIkqWL~r-------------knTCPIC  910 (917)
                      ...+.+.|.-||..-.+-+.                   ...--|.-.+|.+|+-+|+..             +-.||+|
T Consensus       267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC  346 (358)
T PF10272_consen  267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC  346 (358)
T ss_pred             CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence            44677788889886432100                   001123346799999999852             3479999


Q ss_pred             CCCc
Q 002484          911 KTTA  914 (917)
Q Consensus       911 R~~l  914 (917)
                      |+.+
T Consensus       347 Ra~F  350 (358)
T PF10272_consen  347 RAKF  350 (358)
T ss_pred             cccc
Confidence            9874

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.22  E-value=0.061  Score=55.62  Aligned_cols=51  Identities=31%  Similarity=0.732  Sum_probs=35.8

Q ss_pred             CCCCCCCcccccccCCCCc----eEEeCCCChhcHHHHHHHHhc-----C------CCCcCcCCCc
Q 002484          864 PTDLEPCCICQEEYTDGDD----LGVLDCGHNFHTDCIKLWLMQ-----K------NLCPICKTTA  914 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~----VviLPCgHvFH~~CIkqWL~r-----k------nTCPICR~~l  914 (917)
                      .++...|.||+..--++..    .--..||.-||.-|+..||+.     +      ..||.|.+++
T Consensus       162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi  227 (234)
T KOG3268|consen  162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI  227 (234)
T ss_pred             chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence            3444568899765443321    223479999999999999972     1      3699998876

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.04  E-value=0.15  Score=57.15  Aligned_cols=51  Identities=20%  Similarity=0.385  Sum_probs=33.9

Q ss_pred             CCCCCCCcccccccCCCCc-eEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484          864 PTDLEPCCICQEEYTDGDD-LGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTA  914 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~-VviLPCgHvFH~~CIkqWL~-rknTCPICR~~l  914 (917)
                      .++++-|+.|+|++...|+ ..-.+||-..|.-|...--+ ....||.||+..
T Consensus        11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y   63 (480)
T COG5175          11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY   63 (480)
T ss_pred             ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence            3444559999999987664 33457897666666433222 456899999754

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=91.00  E-value=0.1  Score=44.71  Aligned_cols=46  Identities=35%  Similarity=0.621  Sum_probs=34.3

Q ss_pred             CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP  916 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lLp  916 (917)
                      ....|..|...-..+   .+++|+|+.+..|..-  ++-+-||+|-+++..
T Consensus         6 ~~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccC
Confidence            345687787764444   6889999999999554  466789999887753

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=90.95  E-value=0.1  Score=56.86  Aligned_cols=49  Identities=29%  Similarity=0.649  Sum_probs=36.5

Q ss_pred             CCCCCcccccccCCCCc-eEEeCCC-----ChhcHHHHHHHHh--cCCCCcCcCCCc
Q 002484          866 DLEPCCICQEEYTDGDD-LGVLDCG-----HNFHTDCIKLWLM--QKNLCPICKTTA  914 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~-VviLPCg-----HvFH~~CIkqWL~--rknTCPICR~~l  914 (917)
                      +...|-||.++...... ..+.||.     +..|+.|+.+|+.  .+..|.+|+...
T Consensus        77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~  133 (323)
T KOG1609|consen   77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF  133 (323)
T ss_pred             CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence            35679999998765432 3455764     5689999999998  556799998754

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=90.90  E-value=0.13  Score=57.34  Aligned_cols=45  Identities=27%  Similarity=0.616  Sum_probs=37.0

Q ss_pred             CCCCCCCcccccccCCCCceEEeCC--CChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          864 PTDLEPCCICQEEYTDGDDLGVLDC--GHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~VviLPC--gHvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      ..+..+|+||.+.+..+    ++.|  ||.-|..|-.   +..+.||.||.++-
T Consensus        45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             chhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence            34556799999999987    7788  7999999976   45788999998874

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=90.40  E-value=0.079  Score=67.53  Aligned_cols=45  Identities=36%  Similarity=0.833  Sum_probs=38.4

Q ss_pred             CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCC
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT  912 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~  912 (917)
                      +...|.||++.+..-.  .+..|||.||..|+..|+..+..||+|+.
T Consensus      1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            3447999999988321  57789999999999999999999999974

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=90.21  E-value=0.15  Score=56.36  Aligned_cols=44  Identities=39%  Similarity=0.826  Sum_probs=37.8

Q ss_pred             CCcccccccCCCC-ceEEeCCCChhcHHHHHHHHhcCCCCcCcCC
Q 002484          869 PCCICQEEYTDGD-DLGVLDCGHNFHTDCIKLWLMQKNLCPICKT  912 (917)
Q Consensus       869 ~C~ICLEefe~ge-~VviLPCgHvFH~~CIkqWL~rknTCPICR~  912 (917)
                      .|+||.|.+.... .+..++|||.-|..|..+.....-+||+|.+
T Consensus       160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            3999999877655 3567899999999999999887899999987

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=90.19  E-value=0.25  Score=60.47  Aligned_cols=50  Identities=28%  Similarity=0.646  Sum_probs=37.5

Q ss_pred             CCCCCCCcccccccCCCCceEEeCCCC-----hhcHHHHHHHHh--cCCCCcCcCCCc
Q 002484          864 PTDLEPCCICQEEYTDGDDLGVLDCGH-----NFHTDCIKLWLM--QKNLCPICKTTA  914 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~ge~VviLPCgH-----vFH~~CIkqWL~--rknTCPICR~~l  914 (917)
                      .+++..|.||..+-..++.+ .-||++     ..|.+|+.+|+.  .++.|-+|+.++
T Consensus         9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~   65 (1175)
T COG5183           9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY   65 (1175)
T ss_pred             CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence            34557899998876665443 236764     689999999998  456799998865

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.46  E-value=0.21  Score=54.45  Aligned_cols=52  Identities=27%  Similarity=0.527  Sum_probs=36.8

Q ss_pred             CCCCCCCCcccccccCCCCce-EEeCCC-----ChhcHHHHHHHHhcCC--------CCcCcCCCc
Q 002484          863 SPTDLEPCCICQEEYTDGDDL-GVLDCG-----HNFHTDCIKLWLMQKN--------LCPICKTTA  914 (917)
Q Consensus       863 s~~e~e~C~ICLEefe~ge~V-viLPCg-----HvFH~~CIkqWL~rkn--------TCPICR~~l  914 (917)
                      ..+.+..|-||+..=++.-.- -+-||.     |..|..||..|+.+|.        +||-|+++.
T Consensus        16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            345556788999875554221 123663     8999999999998654        599999874

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=88.07  E-value=0.18  Score=40.94  Aligned_cols=41  Identities=34%  Similarity=0.826  Sum_probs=23.4

Q ss_pred             CcccccccCCCCceEEeCCCChhcHHHHHHHHhcCC--CCcCc
Q 002484          870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN--LCPIC  910 (917)
Q Consensus       870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rkn--TCPIC  910 (917)
                      |.+|.+-...+..-....|.=.+|..|++.+++.+.  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            678888877763222224888999999999998655  79988

; PDB: 3NW0_A 2CT0_A.

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.55  E-value=0.17  Score=42.21  Aligned_cols=42  Identities=29%  Similarity=0.743  Sum_probs=26.1

Q ss_pred             CCcccccccCCCCceEEeCCC-ChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          869 PCCICQEEYTDGDDLGVLDCG-HNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       869 ~C~ICLEefe~ge~VviLPCg-HvFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      .|.-|.-+  +.   ....|. |+.|..|+...|.+...||+|++++.
T Consensus         4 nCKsCWf~--~k---~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP   46 (50)
T PF03854_consen    4 NCKSCWFA--NK---GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP   46 (50)
T ss_dssp             ---SS-S----S---SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred             cChhhhhc--CC---CeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence            35556543  22   356786 99999999999999999999998763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.35  E-value=0.26  Score=52.42  Aligned_cols=39  Identities=28%  Similarity=0.672  Sum_probs=29.3

Q ss_pred             CcccccccCCCCceEEeCCCC-hhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484          870 CCICQEEYTDGDDLGVLDCGH-NFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       870 C~ICLEefe~ge~VviLPCgH-vFH~~CIkqWL~rknTCPICR~~lL  915 (917)
                      |.+|-+.   +..|..|||.| .+|..|-..    ..+||+|+....
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence            8888665   44467789998 789999655    456999987653

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=86.82  E-value=0.37  Score=58.94  Aligned_cols=50  Identities=16%  Similarity=0.266  Sum_probs=36.5

Q ss_pred             CCCCCCcccccccCCCCc-eEEeC---CCChhcHHHHHHHHhc------CCCCcCcCCCc
Q 002484          865 TDLEPCCICQEEYTDGDD-LGVLD---CGHNFHTDCIKLWLMQ------KNLCPICKTTA  914 (917)
Q Consensus       865 ~e~e~C~ICLEefe~ge~-VviLP---CgHvFH~~CIkqWL~r------knTCPICR~~l  914 (917)
                      .+.+.|.||.-++..+++ ..+++   |+|-||..||..|+.+      +-.|++|+..|
T Consensus        94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci  153 (1134)
T KOG0825|consen   94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV  153 (1134)
T ss_pred             ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence            345678888888876432 34444   9999999999999863      34689997654

>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]

Probab=86.71  E-value=0.42  Score=57.55  Aligned_cols=43  Identities=23%  Similarity=0.590  Sum_probs=28.8

Q ss_pred             CCCCCCcccccc-----cCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCc
Q 002484          865 TDLEPCCICQEE-----YTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC  910 (917)
Q Consensus       865 ~e~e~C~ICLEe-----fe~ge~VviLPCgHvFH~~CIkqWL~rknTCPIC  910 (917)
                      .....|.||...     |+.....+...|+++||.+|++.   ....||.|
T Consensus       509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC  556 (580)
T KOG1829|consen  509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC  556 (580)
T ss_pred             cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence            445678899542     33333345668999999999554   34459999

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.16  E-value=0.68  Score=53.40  Aligned_cols=41  Identities=39%  Similarity=0.714  Sum_probs=30.4

Q ss_pred             CCCCCCCcccccccCCC-CceEEeCCCChhcHHHHHHHHhcC
Q 002484          864 PTDLEPCCICQEEYTDG-DDLGVLDCGHNFHTDCIKLWLMQK  904 (917)
Q Consensus       864 ~~e~e~C~ICLEefe~g-e~VviLPCgHvFH~~CIkqWL~rk  904 (917)
                      ......|.||+.++... +...++.|+|.||.+|+++.+..+
T Consensus       143 ~~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~  184 (384)
T KOG1812|consen  143 KLPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK  184 (384)
T ss_pred             ccccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence            33467899999555444 333356899999999999999854

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.07  E-value=0.41  Score=58.35  Aligned_cols=26  Identities=35%  Similarity=0.777  Sum_probs=23.5

Q ss_pred             EEeCCCChhcHHHHHHHHhcCCCCcC
Q 002484          884 GVLDCGHNFHTDCIKLWLMQKNLCPI  909 (917)
Q Consensus       884 viLPCgHvFH~~CIkqWL~rknTCPI  909 (917)
                      .+..|+|+-|..|.+.|+.....||.
T Consensus      1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhccccccccHHHHHHHHhcCCcCCC
Confidence            45689999999999999999999985

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=83.20  E-value=0.34  Score=59.11  Aligned_cols=44  Identities=30%  Similarity=0.683  Sum_probs=36.4

Q ss_pred             CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcC---CCCcCcCCCc
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK---NLCPICKTTA  914 (917)
Q Consensus       868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rk---nTCPICR~~l  914 (917)
                      .+|.||++.|.++   ..+.|-|.||..|+..-|..+   ..||+|+..+
T Consensus        22 lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~   68 (684)
T KOG4362|consen   22 LECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI   68 (684)
T ss_pred             ccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence            4699999999988   678999999999998776644   4799998543

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=82.35  E-value=1.7  Score=43.47  Aligned_cols=50  Identities=28%  Similarity=0.555  Sum_probs=37.2

Q ss_pred             CCCCCcccccccCCCCceEEeC-CCChhcHHHHHHHHh---cCCCCcCcCCCcC
Q 002484          866 DLEPCCICQEEYTDGDDLGVLD-CGHNFHTDCIKLWLM---QKNLCPICKTTAL  915 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~VviLP-CgHvFH~~CIkqWL~---rknTCPICR~~lL  915 (917)
                      ...+|-||.|.-.++.-++--. ||-..|..|-...++   ....||+||+.+.
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK  132 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK  132 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence            6678999999877664333222 888899998877655   4678999998764

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=81.23  E-value=1.7  Score=37.41  Aligned_cols=43  Identities=35%  Similarity=0.810  Sum_probs=32.2

Q ss_pred             CCCCCcccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcC--cCC
Q 002484          866 DLEPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPI--CKT  912 (917)
Q Consensus       866 e~e~C~ICLEefe~ge~VviL-PCgHvFH~~CIkqWL~rknTCPI--CR~  912 (917)
                      ....|.+|-+.|++++++++- .|+=.||++|..+    ...|-+  |..
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~   49 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGT   49 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCC
Confidence            345799999999977777766 5999999999544    445544  544

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.80  E-value=1.7  Score=48.44  Aligned_cols=27  Identities=19%  Similarity=0.645  Sum_probs=21.5

Q ss_pred             CCChhcHHHHHHHHh-------------cCCCCcCcCCCc
Q 002484          888 CGHNFHTDCIKLWLM-------------QKNLCPICKTTA  914 (917)
Q Consensus       888 CgHvFH~~CIkqWL~-------------rknTCPICR~~l  914 (917)
                      |.-.+|..|+.+|+.             .+-+||+||+.+
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f  364 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF  364 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence            556889999999884             455899999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	917
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		4e-06
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		5e-06
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		9e-06
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		7e-05
2ecl_A	81	Solution Structure Of The Ring Domain Of The Human		1e-04
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		2e-04
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		5e-04

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 859 TETESPTDLEPCC-ICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916
           TE       E CC IC  EY  GD    L C H FH  C+ +WL +   CP+C+    P
Sbjct: 31  TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 870 CCICQEEYTDGDDLGVLD-CGHNFHTDCIKLWLMQKNLCPICKTTAL 915
           C +C  E  DG++   L  CGH FH +C+ +WL   + CP+C+ T +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
           E C +C E++   D+LG+  C H FH  C+  WL  + +CP+C    L
Sbjct: 16  ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 854 EKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTT 913
           E++V +  E P       +C+E+Y  G+ +  L C H FH  CI  WL Q + CP+C+ +
Sbjct: 9   EEHVGSGLECP-------VCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61

>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring-Box Protein 2 Length = 81

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 867 LEPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICK 911
           ++ C  CQ E    D + V  +C H+FH  C+ LW+ Q N CP+C+
Sbjct: 26  MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
           C IC     +G+D+  L C H FH  C+  WL+    CPIC+
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT 917
           C +C  ++     L VL C H FH  C+  WL     CPIC+  + P+
Sbjct: 26  CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	917
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	3e-20
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-18
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	4e-17
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	1e-16
2ect_A	78	Ring finger protein 126; metal binding protein, st	1e-15
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-14
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	1e-13
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-13
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-13
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-13
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-13
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	3e-13
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-10
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-10
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	9e-10
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	4e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	5e-08
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	5e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	7e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-07
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	5e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	3e-06
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	3e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	8e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	8e-06
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	1e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	2e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	3e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	3e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	4e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	5e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	6e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	8e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	8e-05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	1e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	1e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	3e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	3e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	4e-04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	4e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	8e-04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	9e-04
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	9e-04

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 84.8 bits (210), Expect = 3e-20
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 858 STETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT 917
           S + +     E C +C E++   D+LG+  C H FH  C+  WL  + +CP+C    L  
Sbjct: 6   SGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 20/62 (32%), Positives = 26/62 (41%)

Query: 855 KYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
           K    E       E C IC     +G+D+  L C H FH  C+  WL+    CPIC+   
Sbjct: 2   KQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

Query: 915 LP 916
             
Sbjct: 62  EA 63

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 75.8 bits (187), Expect = 4e-17
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 843 SEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM 902
           S  +  ++    ++ +           C +C  ++     L VL C H FH  C+  WL 
Sbjct: 2   SSGSSGQL-PSYRF-NPNNHQSEQTL-CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK 58

Query: 903 QKNLCPICKTTALPT 917
               CPIC+  + P+
Sbjct: 59  ANRTCPICRADSGPS 73

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 841 GLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLW 900
             S+E+I   +              ++  C IC  EY  GD    L C H FH  C+ +W
Sbjct: 16  PASKESIDA-LPEILVTEDHGAVGQEMC-CPICCSEYVKGDVATELPCHHYFHKPCVSIW 73

Query: 901 LMQKNLCPICKTTALPT 917
           L +   CP+C+    P 
Sbjct: 74  LQKSGTCPVCR-CMFPP 89

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 858 STETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
            TE    + LE C +C+E+Y  G+ +  L C H FH  CI  WL Q + CP+C+
Sbjct: 7   GTEEHVGSGLE-CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
            T  E C IC E+ ++      L C H F   CI  W+ Q   CP+CK 
Sbjct: 2   ATVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKV 48

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 857 VSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
            S   +  TD E CCIC +   D     +L C H+F   CI  W  +   CPIC+
Sbjct: 5   SSGRVKQLTDEEECCICMDGRADL----ILPCAHSFCQKCIDKWSDRHRNCPICR 55

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 859 TETESPTDLEP-----CCICQEEYTD----GDDLGVLDCGHNFHTDCIKLWLMQKNLCPI 909
           +   S T L P     C IC + Y++    G  +   +CGH F + C++  L   N CP 
Sbjct: 2   SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61

Query: 910 CKT 912
           C+ 
Sbjct: 62  CRK 64

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 859 TETESPTDLEPCCICQEEYTD----GDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           T    P+    C IC + Y++    G  +   +CGH F + C++  L   N CP C+ 
Sbjct: 2   TTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 59

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 870 CCICQEEYTDGDDL-GVLDCGHNFHTDCIKLWLMQKNLCPICK 911
           C IC E+      +  VL CGH  H  C +  L +   CP+C 
Sbjct: 8   CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 870 CCICQEEYTD----GDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916
           C IC + Y++    G  +   +CGH F + C++  L   N CP C+     
Sbjct: 6   CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 868 EPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPIC 910
           + C  CQ E    D + V  +C H+FH  C+ LW+ Q N CP+C
Sbjct: 27  DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 64.1 bits (157), Expect = 3e-13
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 870 CCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
           C +C  E  DG++   L  CGH FH +C+ +WL   + CP+C+ T +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 807 AEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTD 866
           A M + +R  + D + +   +   LE+          E+  M+  K E           +
Sbjct: 13  ALMEELNRSKK-DFEAIIQAKNKELEQT-------KEEKEKMQAQKEEVLSHMNDVLENE 64

Query: 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTT 913
           L+ C IC E + +      L+C H+F + CI  W+ +K  CPIC+  
Sbjct: 65  LQ-CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKD 107

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 858 STETESPTDLEP---CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
            T     T+L P   C +C   + D     +++C H+F   CI  +L     CPIC    
Sbjct: 3   RTTRIKITELNPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60

Query: 915 LPT 917
             T
Sbjct: 61  HKT 63

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 54.8 bits (132), Expect = 9e-10
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           C IC++ + +     V  C H F   C          C IC  
Sbjct: 18  CFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICDQ 57

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 55.9 bits (134), Expect = 2e-09
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 870 CCICQEEYTDGDDLG----VLDCGHNFHTDCIKLWLMQKNLCPICK 911
           C IC + Y++    G      +CGH F + C++  L   N CP C+
Sbjct: 10  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 870 CCICQEEYTD----GDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           C IC + Y++    G  +   +CGH F + C++  L   N CP C+ 
Sbjct: 75  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 121

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 865 TDLEP---CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           ++L P   C IC+    D     + +C H F   CI       N CP C  
Sbjct: 10  SELTPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNI 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 93/669 (13%), Positives = 186/669 (27%), Gaps = 217/669 (32%)

Query: 320 LSSSFTSGERDAALQEEGNTSSI----------PRNNVEQHPMFVRSVEMRNMAQDPTSW 369
             S  +  E D  +  +   S                V++   FV  V   N       +
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK---FVEEVLRINY-----KF 93

Query: 370 GLATG--------SSSGGIYLTAQVGSNSSSQPSPP---PAMSPHHKYSTHSQQRLSEFS 418
            L +         S    +Y+  +    + +Q         + P+ K     +Q L E  
Sbjct: 94  -LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALLE-- 146

Query: 419 WPLFPSAPQNPNLNAGYAGNNGSGGQGMGIGLGQNPCNSSGLETEQESLASAASDKVGTS 478
             L P      N+             G+  G G+              +A          
Sbjct: 147 --LRP----AKNV----------LIDGVL-GSGKT------------WVALDVC------ 171

Query: 479 SRSSGFMVEENNG----NAGSSLGGWGLSCKRKALEGTSAQSCSAGSSSCFPLAENGVSA 534
             S     + +      N  +        C          Q         + +  N  ++
Sbjct: 172 -LSYKVQCKMDFKIFWLNLKN--------CNSPETVLEMLQKL------LYQIDPNW-TS 215

Query: 535 RNDPSSSLSLSLP-----LRDSPTACPLEQS--------NPR----FGVGMRIVEDGFPP 577
           R+D SS++ L +      LR    + P E          N +    F +  +I+      
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL------ 269

Query: 578 PGITGNSENCLRSFGRRGNPRHRQESVPFSLLSRGSSRHSNIASPHSPAIPLPYSASLGF 637
             +T                  R + V    LS  ++ H ++   HS  +      SL  
Sbjct: 270 --LTT-----------------RFKQV-TDFLSAATTTHISL-DHHSMTLTPDEVKSL-L 307

Query: 638 RSAAAQDANINAPQI-QPHPVHVSSFSRNMHHFP-----WRGASSSRAGSLSISSTSGER 691
                        ++   +P  +S  + ++         W+  +  +  ++  SS +   
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 692 GATLREEGNARSIPRNNAEHPMYV--------SSAGMRNMVQDPANWGLVTRSSSGDVSS 743
            A  R+  +  S+   +A  P  +          + +  +V     + LV +        
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK----- 422

Query: 744 ARIGSSSSIHPLPGPAWIPHPIPSTHSHRLMSEIRQVLTAMHR---------------GE 788
               S+ SI  +               +  +    +   A+HR                 
Sbjct: 423 ---ESTISIPSI---------------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 789 NLRIEDFMLFEPFVYH-GLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVST-----GL 842
                D   +    +H    E  +R    R     M + +   LE++I   ST     G 
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFR-----MVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 843 SEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLG--VLDCGHNF----HTDC 896
              T+ ++   + Y+        D +P     E     + +   +     N     +TD 
Sbjct: 520 ILNTLQQLKFYKPYI-------CDNDP---KYERLV--NAILDFLPKIEENLICSKYTDL 567

Query: 897 IKLWLMQKN 905
           +++ LM ++
Sbjct: 568 LRIALMAED 576

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 52.5 bits (126), Expect = 6e-09
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 858 STETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           S  T     +  C IC +          L C H F   C+K        C +C+ 
Sbjct: 6   SGNTAPSLTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCRQ 57

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-QKNLCPICKTT 913
           C IC E+  D        C       CI+ WL  Q+  CP C+  
Sbjct: 25  CFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAP 67

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM--QKNLCPICKT 912
           P  ++ C IC      G       CG   H  C+  +     +  CP C  
Sbjct: 12  PDAVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCND 60

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 51.0 bits (121), Expect = 5e-08
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 16/90 (17%)

Query: 837 DVSTGLSEETIMKIMKREKYVSTETES-PTDLEPCCICQEEYTDGDDLG----------- 884
           D  +G +     K  + +K+ +    +    ++ C IC+    D                
Sbjct: 6   DTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE 65

Query: 885 ----VLDCGHNFHTDCIKLWLMQKNLCPIC 910
                  C H FH  CI  WL  + +CP+ 
Sbjct: 66  CTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 51.4 bits (122), Expect = 5e-08
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 26/117 (22%)

Query: 809 MHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLE 868
           MH  H  +  D +N+ ++         G  +   + +   ++ K         +   D  
Sbjct: 1   MHHHHHHV--DEENLYFQGG-------GRGTNSGAGKKRFEVKKWNAVALWAWDIVVDN- 50

Query: 869 PCCICQEEY---------------TDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC 910
            C IC+                  ++   +    C H FH  CI  WL  + +CP+ 
Sbjct: 51  -CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 54.8 bits (131), Expect = 7e-08
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 837 DVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDC 896
           D++          I   ++      E  +  + C IC E   D     +  CGH   T C
Sbjct: 302 DLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVK---IEPCGHLMCTSC 358

Query: 897 IKLWLM-QKNLCPICKT 912
           +  W   +   CP C+ 
Sbjct: 359 LTSWQESEGQGCPFCRC 375

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
           C IC E +     + +  C HN+ + CI+ +L  K  CP C  T 
Sbjct: 25  CGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 48.3 bits (114), Expect = 5e-07
 Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 28/95 (29%)

Query: 839 STGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLG-------------- 884
           S+G  E+ I K          E +   + E C IC E+                      
Sbjct: 5   SSGEPEQVIRKYT-------EELKVAPE-EDCIICMEKLAVASGYSDMTDSKALGPMVVG 56

Query: 885 -VLDCGHNFHTDCIKLWLMQKN-----LCPICKTT 913
            +  C H FH  C+       N      CP CKT 
Sbjct: 57  RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNL-CPICKTT 913
           C  CQE            C HN   DC+      +   CP C+  
Sbjct: 55  CICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYD 96

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 16/84 (19%)

Query: 845 ETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGV-----LDCGHNFHTDCIKL 899
           +     M          E   +   C IC     DG ++ +       C    H  C++ 
Sbjct: 286 DLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE 345

Query: 900 WLMQKN-----------LCPICKT 912
           W                 CP CK 
Sbjct: 346 WFKTLMDGKTFLEVSFGQCPFCKA 369

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916
           C  C     +   + +  C H F ++C+   +     CP+C T A  
Sbjct: 25  CSRCTNILRE--PVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPAWI 67

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 43.9 bits (103), Expect = 8e-06
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 857 VSTETESPTDLEPCCICQEEYTDGDDLGVL--DCGHNFHTDCI-KLWLMQKNLCPICKT 912
           +S   ++  D   C +C E   + DD+      CG+     C  ++   +  LCP C+ 
Sbjct: 1   MSRSPDAKEDPVECPLCMEPL-EIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 15/138 (10%)

Query: 777 IRQVLTAMHRGENLRIEDFMLFEPFVYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIG 836
            R+ L  +   E        +          +M  +  +  L    +  + L+  E    
Sbjct: 101 FRKALELIIDSETGFASSTNILNLVDQLKGKKMRKKEAEQVLQ-KFVQNKWLIEKEGEFT 159

Query: 837 DVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDC 896
                + E   M+   RE Y       P  ++ C IC      G       CG   H  C
Sbjct: 160 LHGRAILE---MEQYIRETY-------PDAVKICNICHSLLIQGQ--SCETCGIRMHLPC 207

Query: 897 IKLWLM--QKNLCPICKT 912
           +  +     +  CP C  
Sbjct: 208 VAKYFQSNAEPRCPHCND 225

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 870 CCICQEEYTDGDDL-GVLDCGHNFHTDCI-KLWLMQKN--LCPIC-KTTALP 916
           C IC E +T+      +L CGH     C+ KL     N   CP C K T + 
Sbjct: 18  CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 858 STETESPTDLEPCC-ICQEEYTDGDDLGVLDCG-----HNFHTDCIKLWLMQKN--LCPI 909
           S+ T      +  C IC  E  D   L +  C      H  H  C++ W+   +   C +
Sbjct: 5   SSGTSITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCEL 63

Query: 910 CKTT 913
           CK  
Sbjct: 64  CKYE 67

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 862 ESPTDLEP---CCICQEEYTDGDDLGVL--DCGHNFHTDCIKLWLMQKNL--CPICKTTA 914
                +     C IC++  TD     V+   CG+++  +CI+  L++ +   CP C    
Sbjct: 5   SEDDPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60

Query: 915 LP 916
           + 
Sbjct: 61  VS 62

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK 904
           C +C  EY       +  C   F T C+K ++   
Sbjct: 8   CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL 42

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 858 STETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNL-CPICKTT 913
                S ++ + C IC E   +      L C H     C +  + + +L CP C+  
Sbjct: 7   KDAIPSLSECQ-CGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCRRR 59

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 8/48 (16%)

Query: 870 CCICQEEYTDGDDLGV-LDCGHNFHTDCIKLWLMQKN---LCPICKTT 913
           C IC E   +     V   C H F   C+   L QK     CP+CK  
Sbjct: 24  CPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWL-MQKNLCPICKTT 913
           C  CQE           +C HN   DC++     Q   CP C+  
Sbjct: 81  CVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHD 122

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 858 STETESPTDLEP---CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNL-CPICKTT 913
                SP  L     C IC +   +   +   +C H F  DCI   L   N  CP C+  
Sbjct: 42  LEIVVSPRSLHSELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKK 99

Query: 914 ALPT 917
            +  
Sbjct: 100 LVSK 103

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 857 VSTETESPTDLEPCCICQEEYTDGDDLGVL--DCGHNFHTDCIKLWLMQKN--LCPICKT 912
              +   P +L  C IC++  TD     V+   CG+++  +CI+  L++ +   CP C  
Sbjct: 6   SGEDDPIPDELL-CLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60

Query: 913 TALP 916
             + 
Sbjct: 61  NDVS 64

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           C  CQ E        +L C H   + C++   MQ   CPIC+ 
Sbjct: 9   CQQCQAEAKC---PKLLPCLHTLCSGCLEASGMQ---CPICQA 45

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKL-WLMQKNL--CPICKTT 913
           C IC +          +DCGHNF   CI            CP+CKT+
Sbjct: 23  CPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS 66

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 12/52 (23%)

Query: 870 CCICQEEYTDGDDLGV-LDCGHNFHTDCIKLWLMQKNL-------CPICKTT 913
           C IC E  T+     + LDCGH+    CI +   +          CP+C  +
Sbjct: 15  CPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNL-CPICKTT 913
           ++  D   C  C             +CGH F   C+   L   +  C  C+ +
Sbjct: 10  KTVEDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQES 59

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 9/50 (18%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKL-WLMQKNL-----CPICKTT 913
           C IC E   +       DC H+F   CI L +   +N      CP+C+  
Sbjct: 22  CPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN---LCPIC 910
           C +C E   +     +++CGHNF   CI  W         CP+C
Sbjct: 18  CSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 7/62 (11%)

Query: 860 ETESPTDLEP---CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWL-MQKNLCPICKTTAL 915
             + P        C IC+    D        C H F   CI   L +  + CP C+    
Sbjct: 13  AVDFPAHFVKSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69

Query: 916 PT 917
           PT
Sbjct: 70  PT 71

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFH-TDCIKLWLMQKNLCPIC 910
           +    L+PC +C++   DG+ +     GH      C +        CPIC
Sbjct: 2   DCQNLLKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCPIC 50

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 11/51 (21%)

Query: 870 CCICQEEYTDGDDLGV-LDCGHNFHTDCIKLWLMQKNL------CPICKTT 913
           C IC E  T      + LDCGH+F   C+     +  L      CP+C+ +
Sbjct: 22  CPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 861 TESPTDLEPCCICQEEYTDGDDLGVLDCGHNFH-TDCIKLWLMQKNLCPIC 910
           +     +EPC ICQ    +G  +     GH      C K    +   CP+C
Sbjct: 2   SLPLNAIEPCVICQGRPKNGC-IVHGKTGHLMACFTCAKKLKKRNKPCPVC 51

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 6/44 (13%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKL-WLMQKNL--CPIC 910
           C IC +          +DCGHNF   CI            CP+C
Sbjct: 23  CPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 11/54 (20%)

Query: 868 EPCC-ICQEEYTDGDDLGVLDCG-----HNFHTDCIKLWLM--QKNLCPICKTT 913
            P C IC EE   G++     CG      N H  C+  WL   +   C IC   
Sbjct: 6   VPVCWICNEE--LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	917
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	8e-17
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-14
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-12
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	6e-12
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	8e-11
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	8e-10
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	1e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	5e-09
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	7e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	1e-06
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	3e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	5e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	1e-04
d1wema_	76	g.50.1.2 (A:) Death associated transcription facto	0.002
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	0.003
d1weea_	72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	0.003

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 73.0 bits (179), Expect = 8e-17
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 870 CCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
           C +C  E  DG++   L  CGH FH +C+ +WL   + CP+C+ T +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 66.5 bits (162), Expect = 2e-14
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           E C IC E+ ++      L C H F   CI  W+ Q   CP+CK 
Sbjct: 6   ERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKV 48

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 4e-12
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 843 SEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWL- 901
           + +  +K+  +E+Y     E  +  + C IC E   D   + +  CGH   T C+  W  
Sbjct: 1   TPQDHIKV-TQEQY-ELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQE 55

Query: 902 MQKNLCPICKT 912
            +   CP C+ 
Sbjct: 56  SEGQGCPFCRC 66

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 6e-12
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 17/80 (21%)

Query: 848 MKIMKREKYVSTETESPTDLEPCCICQEEYTD---------------GDDLGVLDCGHNF 892
            ++ K+   V+         + C IC+    D                  +    C H F
Sbjct: 4   FEV-KKWNAVALWAWDIVV-DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 61

Query: 893 HTDCIKLWLMQKNLCPICKT 912
           H  CI  WL  + +CP+   
Sbjct: 62  HFHCISRWLKTRQVCPLDNR 81

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 8e-11
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 866 DLEPCCICQEEYTDGDDLGVL--DCGHNFHTDCIKLWL-MQKNLCPICKTT 913
           D + C  C+        L ++   CGH     C+ L        CP C T 
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTP 52

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 8e-10
 Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 870 CCICQEEYTDGDD-LGVLDCGHNFHTDCIKLWLMQKNL-CPICKT 912
           C +C E     D       CG+     C       +N  CP C+ 
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 47

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 866 DLEPCCICQEEYTDGDDL--GVLDCGHNFHTDCIKLWL--MQKNLCPICKTT 913
           D+  C IC EE  +      G      N H  C+  WL   +   C IC   
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 5e-09
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
           C  CQ E        +L C H   + C++        CPIC+ 
Sbjct: 9   CQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQA 45

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 6/47 (12%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN---LCPICKTT 913
           C IC E   +        C H F   C+   L QK     CP+CK  
Sbjct: 24  CPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 7e-07
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWL-MQKNLCPICKTTALPT 917
           C IC+    D        C H F   CI   L +  + CP C+    PT
Sbjct: 26  CQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 8/55 (14%)

Query: 865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNL--------CPICK 911
           +    C +C  EY       +  C   F T C+K ++             CP   
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 28/94 (29%)

Query: 839 STGLSEETIMKIMKREKYVSTETESPTDLEPCCICQE---------------EYTDGDDL 883
           S+G  E+ I K  +       E +   + E C IC E                       
Sbjct: 5   SSGEPEQVIRKYTE-------ELKVAPE-EDCIICMEKLAVASGYSDMTDSKALGPMVVG 56

Query: 884 GVLDCGHNFHTDCIKLWLMQKNL-----CPICKT 912
            +  C H FH  C+       N      CP CKT
Sbjct: 57  RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT 917
           C  C     +   L    C H F ++C+   +     CP+C T A   
Sbjct: 25  CSRCTNILREPVCL--GGCEHIFCSNCVSDCIGTG--CPVCYTPAWIQ 68

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 5/42 (11%), Positives = 10/42 (23%), Gaps = 2/42 (4%)

Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
           C I  +                F    ++ ++      PI  
Sbjct: 3   CAISGKVPRRPVL--SPKSRTIFEKSLLEQYVKDTGNDPITN 42

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 858 STETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNL---------CP 908
           S E E        CIC++ + +   +    C   FH DC+ +   +  L         CP
Sbjct: 6   SGECEVYDPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65

Query: 909 ICKTTALPT 917
            C   + P+
Sbjct: 66  NCTILSGPS 74

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916
           E P     C I  E   D     ++  G  +    I+ WL   +         L 
Sbjct: 4   EFPEYFR-CPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 858 STETESPTDLEPCCICQEEYTDGDDLGVLD-CGHNFHTDCIKLWLMQKN----LCPICKT 912
           S       + +  C C  +  DG+ +   D CG   HT CI +          LC  C  
Sbjct: 6   SGMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65

Query: 913 TALPT 917
            + P+
Sbjct: 66  LSGPS 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	917
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.56
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.5
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.44
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.4
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.24
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.19
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.16
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.15
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.04
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.93
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.92
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.89
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.86
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.85
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.81
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.5
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	92.05
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	92.03
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	91.64
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	90.33
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	89.21
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	88.96
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	88.53
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	88.46
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	88.05
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	80.87

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.56  E-value=1.1e-15  Score=106.74  Aligned_cols=51  Identities=37%  Similarity=1.030  Sum_probs=46.4

Q ss_pred             CCCCCCCCCCCCCCCCCCEEEE-CCCCHHCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             9998776644666799951993-77992108889998845999868688867
Q 002484          865 TDLEPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       865 ~e~e~CaICLEEf~~ge~V~iL-PCgH~FH~~CIkqWL~~knTCPICRk~lL  915 (917)
                      +++.+|+||+++|..++.+..+ .|+|.||.+||.+||+.+++||+||++++
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             8999984979001079889990898981059999999984993878897848

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=7.2e-15  Score=101.83  Aligned_cols=50  Identities=30%  Similarity=0.466  Sum_probs=39.3

Q ss_pred             CCCCCCCCCCCCCC---------------CCCEEEECCCCHHCHHHHHHHHHCC-----CCCCCCCCCCC
Q ss_conf             99877664466679---------------9951993779921088899988459-----99868688867
Q 002484          866 DLEPCCICQEEYTD---------------GDDLGVLDCGHNFHTDCIKLWLMQK-----NLCPICKTTAL  915 (917)
Q Consensus       866 e~e~CaICLEEf~~---------------ge~V~iLPCgH~FH~~CIkqWL~~k-----nTCPICRk~lL  915 (917)
                      .++.|+||++++..               ...+.+++|+|.||.+||.+||+.+     .+||+||+.+.
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHC
T ss_conf             5653453010001344433543334545543468799999056999999999667578976655012206

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.8e-14  Score=96.96  Aligned_cols=51  Identities=27%  Similarity=0.625  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCCCCCCCC---------------CEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99987766446667999---------------5199377992108889998845999868688867
Q 002484          865 TDLEPCCICQEEYTDGD---------------DLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       865 ~e~e~CaICLEEf~~ge---------------~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lL  915 (917)
                      ...+.|+||++++....               .+.+++|+|+||.+||.+||+.+++||+||+++.
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCCEECCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             899828783602418654323333213355687287265474657999999987996878897231

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.40  E-value=5.9e-14  Score=96.44  Aligned_cols=49  Identities=37%  Similarity=0.701  Sum_probs=42.6

Q ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999877664466679995199377992108889998845999868688867
Q 002484          865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL  915 (917)
Q Consensus       865 ~e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lL  915 (917)
                      ...+.|+||++.|..  .++.++|+|.||.+||.+||+.+++||+||+++.
T Consensus         3 ~~~d~C~IC~~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           3 TVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCCCCCCCCCCC--CCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHH
T ss_conf             979999449939668--8388289991768999999982990888781637

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.3e-13  Score=91.35  Aligned_cols=48  Identities=29%  Similarity=0.698  Sum_probs=40.7

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf             9987766446667999519937799210888999884-59998686888678
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTALP  916 (917)
Q Consensus       866 e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~-~knTCPICRk~lLp  916 (917)
                      ....|+||++.+...   ++++|+|.||..||.+||+ +++.||+||+.+..
T Consensus        22 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          22 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             CTTBCTTTSSSBCCE---ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCCCCCCCCCCCCE---EEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             989993589768996---9958999352999999999785818997958647

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.5e-12  Score=86.85  Aligned_cols=51  Identities=27%  Similarity=0.565  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCCCCCC-C-CEEEECCCCHHCHHHHHHHHHC-CCCCCCCCCCCCC
Q ss_conf             998776644666799-9-5199377992108889998845-9998686888678
Q 002484          866 DLEPCCICQEEYTDG-D-DLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALP  916 (917)
Q Consensus       866 e~e~CaICLEEf~~g-e-~V~iLPCgH~FH~~CIkqWL~~-knTCPICRk~lLp  916 (917)
                      +++.|+||++++... + .+.+++|+|.||.+||.+||.. +..||+||+++-.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             989987088260039956798476372764889999857081979999868130

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.7e-12  Score=85.27  Aligned_cols=45  Identities=33%  Similarity=0.626  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCC---CCCCCCCCCCC
Q ss_conf             7766446667999519937799210888999884599---98686888678
Q 002484          869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN---LCPICKTTALP  916 (917)
Q Consensus       869 ~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~kn---TCPICRk~lLp  916 (917)
                      .|+||++.|++.   .+++|+|.||..||.+|+..++   .||+||+++..
T Consensus        23 ~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          23 ECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             SCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCCCCHHCCE---EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf             997218231891---883799864167899999977999809698883875

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=7.1e-12  Score=84.21  Aligned_cols=46  Identities=30%  Similarity=0.623  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf             87766446667999519937799210888999884-59998686888678
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTALP  916 (917)
Q Consensus       868 e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~-~knTCPICRk~lLp  916 (917)
                      ..|+||++.|.+.   .+++|+|.||+.||.+|++ +...||+||.++.+
T Consensus        24 l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          24 ISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             TBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCHHCC---EECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf             5995678444155---5267887631999999996487907036997996

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.1e-12  Score=86.31  Aligned_cols=48  Identities=23%  Similarity=0.409  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCCCCCE-EEECCCCHHCHHHHHHHHHC-CCCCCCCCCCCCC
Q ss_conf             776644666799951-99377992108889998845-9998686888678
Q 002484          869 PCCICQEEYTDGDDL-GVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALP  916 (917)
Q Consensus       869 ~CaICLEEf~~ge~V-~iLPCgH~FH~~CIkqWL~~-knTCPICRk~lLp  916 (917)
                      +|+||+++|..++.+ ..++|+|.||.+||++|++. ++.||+||+++-.
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             99587823518982598669977045589999996648989865794889

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=2.8e-11  Score=80.67  Aligned_cols=45  Identities=11%  Similarity=0.109  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCCCCEEEE-CCCCHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             776644666799951993-779921088899988459998686888678
Q 002484          869 PCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICKTTALP  916 (917)
Q Consensus       869 ~CaICLEEf~~ge~V~iL-PCgH~FH~~CIkqWL~~knTCPICRk~lLp  916 (917)
                      .|+||++.+++.   .++ .|||.||++||.+||+++++||+||+++-.
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCCCCCCHHHHC---CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             993678568865---7457899845599999987603679854781887

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=7.1e-11  Score=78.31  Aligned_cols=44  Identities=27%  Similarity=0.538  Sum_probs=38.1

Q ss_pred             CCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             98776644666799951993779921088899988459998686888678
Q 002484          867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP  916 (917)
Q Consensus       867 ~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lLp  916 (917)
                      ...|+||++.|.+.   ++++|+|.||..||.+|   +..||+||+++..
T Consensus         6 ~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T d1bora_           6 FLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             CCCCCCCCCCCCCC---EEECCCCHHHHHHHHCC---CCCCCCCCCCCCC
T ss_conf             88984029415897---89017777859988729---7968497996669

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=7.9e-11  Score=78.05  Aligned_cols=45  Identities=24%  Similarity=0.557  Sum_probs=36.6

Q ss_pred             CCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             8776644666799951993779921088899988459998686888678
Q 002484          868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP  916 (917)
Q Consensus       868 e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lLp  916 (917)
                      -.|+||++.|..+  +...+|+|.||..||.+|+.  +.||+||+++..
T Consensus        23 l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          23 LRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             TSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             CCCCCCCCHHHCC--CEECCCCCCHHHHHHHHHHH--CCCCCCCCCCCH
T ss_conf             8992587221127--46588999302999999985--366622786765

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.89  E-value=2.8e-10  Score=74.76  Aligned_cols=52  Identities=29%  Similarity=0.590  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCE--EEECCCCHHCHHHHHHHHH--CCCCCCCCCCCCC
Q ss_conf             99998776644666799951--9937799210888999884--5999868688867
Q 002484          864 PTDLEPCCICQEEYTDGDDL--GVLDCGHNFHTDCIKLWLM--QKNLCPICKTTAL  915 (917)
Q Consensus       864 ~~e~e~CaICLEEf~~ge~V--~iLPCgH~FH~~CIkqWL~--~knTCPICRk~lL  915 (917)
                      +++...|.||++++......  ....|+|.||..||.+|+.  .+.+||+||+++-
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             88899992388627775167314589778873899999971078988916697124

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=7.1e-10  Score=72.42  Aligned_cols=48  Identities=15%  Similarity=0.154  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHC-CCCCCCCCCCCCC
Q ss_conf             99877664466679995199377992108889998845-9998686888678
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALP  916 (917)
Q Consensus       866 e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~-knTCPICRk~lLp  916 (917)
                      +.-.|+||++-|++.   .+++|||.||..||.+||.. +..||+||+++..
T Consensus         6 ~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           6 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCCCCCCCCHHHHH---CCCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             001185837323403---3058868563889999986377657875666542

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.85  E-value=1e-09  Score=71.52  Aligned_cols=48  Identities=25%  Similarity=0.484  Sum_probs=41.3

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHC-CCCCCCCCCCCCC
Q ss_conf             99877664466679995199377992108889998845-9998686888678
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALP  916 (917)
Q Consensus       866 e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~-knTCPICRk~lLp  916 (917)
                      ++-.|+||++-|++.   ++++|+|.||+.||.+|++. ...||+|+.++..
T Consensus         7 ~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCCCCCCCCCHHHCC---EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             627991718121083---3726777433999999999888878865563775

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.2e-09  Score=69.57  Aligned_cols=48  Identities=17%  Similarity=0.040  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCC-CHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             998776644666799951993779-921088899988459998686888678
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCG-HNFHTDCIKLWLMQKNLCPICKTTALP  916 (917)
Q Consensus       866 e~e~CaICLEEf~~ge~V~iLPCg-H~FH~~CIkqWL~~knTCPICRk~lLp  916 (917)
                      +...|+||++-|.+.   ++++|+ |.|++.||.+||..+.+||+||+++..
T Consensus        21 ~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HHHCCCCCHHHHHHH---HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             774886734688777---7623553201499999998706876655566640

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.7e-08  Score=64.24  Aligned_cols=46  Identities=24%  Similarity=0.439  Sum_probs=36.6

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCC--------CCCCCCC
Q ss_conf             998776644666799951993779921088899988459--------9986868
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK--------NLCPICK  911 (917)
Q Consensus       866 e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~k--------nTCPICR  911 (917)
                      ....|+||++++...+.+..++|+|.||.+||++|++.+        -.||.|+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             898493179836077557778999984881799999999851796655891999

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.029  Score=27.55  Aligned_cols=45  Identities=24%  Similarity=0.626  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCC----CCCCCCCC
Q ss_conf             7766446667999519937799210888999884599----98686888
Q 002484          869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN----LCPICKTT  913 (917)
Q Consensus       869 ~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~kn----TCPICRk~  913 (917)
                      .|.||...-..++.+..-.|...||..|+..-+....    .||.||..
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf             9957689799988788589997897998899878589979899289090

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.03  E-value=0.014  Score=29.48  Aligned_cols=52  Identities=25%  Similarity=0.501  Sum_probs=36.8

Q ss_pred             CCCCCCCCCCCCCCCCCCEE-EECCCCHHCHHHHHHHHH-----CCCCCCCCCCCCCC
Q ss_conf             99987766446667999519-937799210888999884-----59998686888678
Q 002484          865 TDLEPCCICQEEYTDGDDLG-VLDCGHNFHTDCIKLWLM-----QKNLCPICKTTALP  916 (917)
Q Consensus       865 ~e~e~CaICLEEf~~ge~V~-iLPCgH~FH~~CIkqWL~-----~knTCPICRk~lLp  916 (917)
                      .....|.||.+.+.+++.+. .-.|..+||..|+..-..     .+-.||.|+..--|
T Consensus         4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~p   61 (64)
T d1we9a_           4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP   61 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCC
T ss_conf             8978184869977999878774899956980457858678888980899689380988

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.64  E-value=0.17  Score=23.09  Aligned_cols=50  Identities=22%  Similarity=0.497  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCCCCCCCEE-EECCCCHHCHHHHHH--HH-H--CCCCCCCCCCCCCC
Q ss_conf             987766446667999519-937799210888999--88-4--59998686888678
Q 002484          867 LEPCCICQEEYTDGDDLG-VLDCGHNFHTDCIKL--WL-M--QKNLCPICKTTALP  916 (917)
Q Consensus       867 ~e~CaICLEEf~~ge~V~-iLPCgH~FH~~CIkq--WL-~--~knTCPICRk~lLp  916 (917)
                      ...|+||...+..++.+. .-.|.-+||..|+.-  .. .  .+-.||.|+...-+
T Consensus        11 ~pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp   66 (79)
T d1wepa_          11 VPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP   66 (79)
T ss_dssp             CCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred             CCEEEECCCCCCCCCCEEECCCCCCCEECCCCCCCHHCCCCCCEEECCCCCCCCCC
T ss_conf             88684898965999868889989973960341745102787877899567387687

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.33  E-value=0.034  Score=27.22  Aligned_cols=50  Identities=22%  Similarity=0.507  Sum_probs=31.3

Q ss_pred             CCCCCCCCCCCCCCCCCEEEE---CCCCHHCHHHHHH----H--HH---CCCCCCCCCCCCCC
Q ss_conf             998776644666799951993---7799210888999----8--84---59998686888678
Q 002484          866 DLEPCCICQEEYTDGDDLGVL---DCGHNFHTDCIKL----W--LM---QKNLCPICKTTALP  916 (917)
Q Consensus       866 e~e~CaICLEEf~~ge~V~iL---PCgH~FH~~CIkq----W--L~---~knTCPICRk~lLp  916 (917)
                      +....+||.+.+..+. +...   .|..+||..|+.-    .  ..   .+-.||.|+..-.|
T Consensus        14 ~~~~~C~C~~~~~~~~-~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~p   75 (78)
T d1wewa_          14 EIKVRCVCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP   75 (78)
T ss_dssp             CCCCCCSSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred             CCCCEEECCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf             9854838999417886-7888689898679800117663242245689998989788485887

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.21  E-value=0.13  Score=23.82  Aligned_cols=38  Identities=26%  Similarity=0.520  Sum_probs=29.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHH
Q ss_conf             999999877664466679995199377992108889998
Q 002484          862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLW  900 (917)
Q Consensus       862 ~s~~e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqW  900 (917)
                      +....++.|.|| +-|...+.+-.--|+-+||..|+++-
T Consensus        10 e~v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          10 EPVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCCCCCCCCC-CCCCCCCEECCEEECCHHHHHHHHHH
T ss_conf             578867623656-74334540232133411247889885

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.04  Score=26.75  Aligned_cols=50  Identities=32%  Similarity=0.667  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCC----CCCCCCCCCCC
Q ss_conf             999998776644666799951993779921088899988459----99868688867
Q 002484          863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK----NLCPICKTTAL  915 (917)
Q Consensus       863 s~~e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~k----nTCPICRk~lL  915 (917)
                      .+...+.|.||.+.   ++.+..-.|.-.||..||...+...    =.||.|+...+
T Consensus         5 ~d~~~~~C~~C~~~---g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~   58 (61)
T d1mm2a_           5 SDHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             SCSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             CCCCCCCCCCCCCC---CEEEEECCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             66886898678997---9588869999607611458885758997689978838456

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.055  Score=25.95  Aligned_cols=45  Identities=29%  Similarity=0.581  Sum_probs=31.3

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCC----CCCCCCCC
Q ss_conf             9987766446667999519937799210888999884599----98686888
Q 002484          866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN----LCPICKTT  913 (917)
Q Consensus       866 e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~kn----TCPICRk~  913 (917)
                      ....|.||.+   .++.+..-.|...||..|+...|....    .||.|+..
T Consensus         6 ~c~~C~~C~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           6 SATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SSSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCCC---CCEEEECCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf             9799877799---697888999991563514899868488989899679483

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.46  E-value=0.14  Score=23.62  Aligned_cols=47  Identities=28%  Similarity=0.598  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCCCCEEEECCCCHHCHHHHH----H--HH---HCCCCCCCCCCCCCC
Q ss_conf             776644666799951993779921088899----9--88---459998686888678
Q 002484          869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIK----L--WL---MQKNLCPICKTTALP  916 (917)
Q Consensus       869 ~CaICLEEf~~ge~V~iLPCgH~FH~~CIk----q--WL---~~knTCPICRk~lLp  916 (917)
                      .| ||...+..++.|..-.|.-+||..|+.    .  .+   ..+-.||.|+...-|
T Consensus        18 ~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~~p   73 (76)
T d1wema_          18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP   73 (76)
T ss_dssp             CS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred             EE-ECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf             87-899925998188879999769951068870101114789981899798184877

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.05  E-value=0.16  Score=23.14  Aligned_cols=49  Identities=27%  Similarity=0.619  Sum_probs=28.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEE--CC-CCHHCHHHHHHHHHC----CCCCCCCCCCCC
Q ss_conf             99998776644666799951993--77-992108889998845----999868688867
Q 002484          864 PTDLEPCCICQEEYTDGDDLGVL--DC-GHNFHTDCIKLWLMQ----KNLCPICKTTAL  915 (917)
Q Consensus       864 ~~e~e~CaICLEEf~~ge~V~iL--PC-gH~FH~~CIkqWL~~----knTCPICRk~lL  915 (917)
                      +.++..++||.+... ++.+.+.  .| ..+||..||.  |+.    +=.||.|+..--
T Consensus        12 d~~e~~~CiC~~~~~-~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~~g   67 (71)
T d1wesa_          12 DPNEPTYCLCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDSG   67 (71)
T ss_dssp             CSSSCCCSTTCCCCC-SSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSCCS
T ss_pred             CCCCCCEEEECCCCC-CCEEEEECCCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCCC
T ss_conf             889988778289778-9877887889999685485478--9847998589968866348

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.87  E-value=0.38  Score=21.03  Aligned_cols=50  Identities=24%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCCCCCCCC-C-CEEEECCCCHHCHHHHHHHHHC----CCCCCCCCC
Q ss_conf             999998776644666799-9-5199377992108889998845----999868688
Q 002484          863 SPTDLEPCCICQEEYTDG-D-DLGVLDCGHNFHTDCIKLWLMQ----KNLCPICKT  912 (917)
Q Consensus       863 s~~e~e~CaICLEEf~~g-e-~V~iLPCgH~FH~~CIkqWL~~----knTCPICRk  912 (917)
                      .......|.+|...|..- . ......|++.||..|-..-...    .-.|-+|.+
T Consensus        44 ~~~~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~~~~~~w~C~~C~k   99 (124)
T d1zbdb_          44 AGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE   99 (124)
T ss_dssp             CSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf             13679858345973347899988672478601158877756899997989806752